20:02:25 21 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 5020 20:02:25 21 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 20:08:11 21 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 5260 20:08:11 21 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:08:11 21 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:08:11 21 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:08:11 21 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:08:11 21 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170121100811 ] 20:08:11 21 Jan 2017 UTC: INFO: Base.py(1333): PID:5267 20:08:11 21 Jan 2017 UTC: INFO: Base.py(1375): Started processing 20:08:11 21 Jan 2017 UTC 20:08:11 21 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:08:11 21 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:08:11 21 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:08:11 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:08:11 21 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:0 20:08:11 21 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:0 2118.9970 -15752.5560 01/21/17 20:01:01 UTC Reboot occured between 0:112:1:0:1:149 and 0:0:1:0:1:152) to sdrifter@soest.hawaii.edu 20:08:11 21 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:0 20:08:11 21 Jan 2017 UTC: INFO: Base.py(975): Sending REBOOTED (dive:0 calls_made:1 call_cycle:0 2118.9970 -15752.5560 01/21/17 20:01:01 UTC Reboot occured between 0:112:1:0:1:149 and 0:0:1:0:1:152) to sdrifter@soest.hawaii.edu 20:08:11 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:08:11 21 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:0 20:08:11 21 Jan 2017 UTC: INFO: Base.py(975): Sending REBOOTED (dive:0 calls_made:1 call_cycle:0 2118.9970 -15752.5560 01/21/17 20:01:01 UTC Reboot occured between 0:112:1:0:1:149 and 0:0:1:0:1:152) to poulos@soest.hawaii.edu 20:08:12 21 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:08:12 21 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:08:12 21 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:08:12 21 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:08:12 21 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:08:12 21 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:08:12 21 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:08:12 21 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:08:12 21 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:08:12 21 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0000kl 20:08:12 21 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0000kl.x 20:08:12 21 Jan 2017 UTC: WARNING: Base.py(727): Final fragment ./sg0000kl.x size (82114) is too big, expected less than or equal to 4096. 20:08:12 21 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0000kl.r in process_file_group 20:08:12 21 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [0] 20:08:12 21 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 20:08:12 21 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 20:08:12 21 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0 20:08:12 21 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0 20:08:12 21 Jan 2017 UTC: CRITICAL: Unhandled exception in main -- exiting: Traceback (most recent call last): File "/usr/local/basestation/Base.py", line 2296, in retval = main() File "/usr/local/basestation/Base.py", line 1798, in main shutil.copyfile(backup_filename, backup_target_filename) File "/usr/lib64/python2.7/shutil.py", line 83, in copyfile with open(dst, 'wb') as fdst: IOError: [Errno 13] Permission denied: './targets.0' 21:53:58 21 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 9560 21:53:58 21 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 21:55:41 21 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 9703 21:55:41 21 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:55:41 21 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:55:41 21 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:55:41 21 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:55:41 21 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170121115540 ] 21:55:41 21 Jan 2017 UTC: INFO: Base.py(1333): PID:9711 21:55:41 21 Jan 2017 UTC: INFO: Base.py(1375): Started processing 21:55:41 21 Jan 2017 UTC 21:55:41 21 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:55:41 21 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:55:41 21 Jan 2017 UTC: ERROR: Utils.py(258): Previous conversion (pid: 5267) went away without cleaning lock file - eliminating lock file and continuing 21:55:41 21 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:55:41 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:55:41 21 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:2 call_cycle:2 21:55:41 21 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:2 call_cycle:2 2118.9320 -15752.6450 01/21/17 21:43:06 UTC Reboot occured between 0:0:1:0:1:152 and 0:2:2:2:1:153) to sdrifter@soest.hawaii.edu 21:55:41 21 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:2 call_cycle:2 21:55:41 21 Jan 2017 UTC: INFO: Base.py(975): Sending REBOOTED (dive:0 calls_made:2 call_cycle:2 2118.9320 -15752.6450 01/21/17 21:43:06 UTC Reboot occured between 0:0:1:0:1:152 and 0:2:2:2:1:153) to sdrifter@soest.hawaii.edu 21:55:41 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:55:41 21 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:2 call_cycle:2 21:55:41 21 Jan 2017 UTC: INFO: Base.py(975): Sending REBOOTED (dive:0 calls_made:2 call_cycle:2 2118.9320 -15752.6450 01/21/17 21:43:06 UTC Reboot occured between 0:0:1:0:1:152 and 0:2:2:2:1:153) to poulos@soest.hawaii.edu 21:55:41 21 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:55:41 21 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:55:41 21 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:55:42 21 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:55:42 21 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:55:42 21 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:55:42 21 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:55:42 21 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:55:42 21 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:55:42 21 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0000kl 21:55:42 21 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0000kl.x 21:55:42 21 Jan 2017 UTC: WARNING: Base.py(727): Final fragment ./sg0000kl.x size (7670) is too big, expected less than or equal to 4096. 21:55:42 21 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0000kl.r in process_file_group 21:55:42 21 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [0] 21:55:42 21 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 21:55:42 21 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 21:55:42 21 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.2 21:55:42 21 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.2 21:55:42 21 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.2 21:55:42 21 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:55:42 21 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:55:42 21 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:55:42 21 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:55:42 21 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:55:42 21 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:55:42 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:55:42 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:55:42 21 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:55:42 21 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:55:42 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:55:42 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:55:42 21 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:55:42 21 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:55:42 21 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:55:42 21 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:55:42 21 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:55:42 21 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:55:42 21 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:55:42 21 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:55:42 21 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 21:55:42 21 Jan 2017 UTC 22:02:55 21 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 10524 22:02:55 21 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 22:04:52 21 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 10674 22:04:52 21 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:04:52 21 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:04:52 21 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:04:52 21 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:04:52 21 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170121120452 ] 22:04:52 21 Jan 2017 UTC: INFO: Base.py(1333): PID:10682 22:04:53 21 Jan 2017 UTC: INFO: Base.py(1375): Started processing 22:04:53 21 Jan 2017 UTC 22:04:53 21 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:04:53 21 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:04:53 21 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:04:53 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:04:53 21 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:0 22:04:53 21 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:0 2118.9710 -15752.6070 01/21/17 22:01:21 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:04:53 21 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:0 22:04:53 21 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:0 2118.9710 -15752.6070 01/21/17 22:01:21 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:04:53 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:04:53 21 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:0 22:04:53 21 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:0 2118.9710 -15752.6070 01/21/17 22:01:21 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 22:04:53 21 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:04:53 21 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:04:53 21 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:04:53 21 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:04:53 21 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:04:53 21 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:04:53 21 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:04:53 21 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:04:53 21 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 22:04:53 21 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 22:04:53 21 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 22:04:53 21 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0 22:04:53 21 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0 22:04:53 21 Jan 2017 UTC: CRITICAL: Unhandled exception in main -- exiting: Traceback (most recent call last): File "/usr/local/basestation/Base.py", line 2296, in retval = main() File "/usr/local/basestation/Base.py", line 1798, in main shutil.copyfile(backup_filename, backup_target_filename) File "/usr/lib64/python2.7/shutil.py", line 83, in copyfile with open(dst, 'wb') as fdst: IOError: [Errno 13] Permission denied: './targets.0' 22:11:49 21 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 11122 22:11:49 21 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 22:13:21 21 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 11221 22:13:21 21 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:13:21 21 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:13:21 21 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:13:21 21 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:13:21 21 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170121121320 ] 22:13:21 21 Jan 2017 UTC: INFO: Base.py(1333): PID:11229 22:13:21 21 Jan 2017 UTC: INFO: Base.py(1375): Started processing 22:13:21 21 Jan 2017 UTC 22:13:21 21 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:13:21 21 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:13:21 21 Jan 2017 UTC: ERROR: Utils.py(258): Previous conversion (pid: 10682) went away without cleaning lock file - eliminating lock file and continuing 22:13:21 21 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:13:21 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:13:21 21 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:1 22:13:21 21 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:1 2118.9370 -15752.6440 01/21/17 22:10:12 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:13:21 21 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:1 22:13:21 21 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:1 2118.9370 -15752.6440 01/21/17 22:10:12 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:13:21 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:13:21 21 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:1 22:13:21 21 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:1 2118.9370 -15752.6440 01/21/17 22:10:12 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 22:13:21 21 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:13:21 21 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:13:22 21 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:13:22 21 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:13:22 21 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:13:22 21 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:13:22 21 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:13:22 21 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:13:22 21 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 22:13:22 21 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 22:13:22 21 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 22:13:22 21 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.1 22:13:22 21 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.1 22:13:22 21 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.1 22:13:22 21 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:13:22 21 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:13:22 21 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:13:22 21 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:13:22 21 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:13:22 21 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:13:22 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:13:22 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:13:22 21 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:13:22 21 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:13:22 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:13:22 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:13:22 21 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:13:22 21 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:13:22 21 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:13:22 21 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:13:22 21 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:13:22 21 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:13:22 21 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:13:22 21 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:13:22 21 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 22:13:22 21 Jan 2017 UTC 22:20:08 21 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 11642 22:20:08 21 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 22:21:18 21 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 11734 22:21:18 21 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:21:18 21 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:21:18 21 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:21:18 21 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:21:18 21 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170121122118 ] 22:21:18 21 Jan 2017 UTC: INFO: Base.py(1333): PID:11741 22:21:18 21 Jan 2017 UTC: INFO: Base.py(1375): Started processing 22:21:18 21 Jan 2017 UTC 22:21:18 21 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:21:19 21 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:21:19 21 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:21:19 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:21:19 21 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:2 22:21:19 21 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:2 2118.9310 -15752.6670 01/21/17 22:18:43 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:21:19 21 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:2 22:21:19 21 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:2 2118.9310 -15752.6670 01/21/17 22:18:43 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:21:19 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:21:19 21 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:2 22:21:19 21 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:2 2118.9310 -15752.6670 01/21/17 22:18:43 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 22:21:19 21 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:21:19 21 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:21:19 21 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:21:19 21 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:21:19 21 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:21:19 21 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:21:19 21 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:21:19 21 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:21:19 21 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 22:21:19 21 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 22:21:19 21 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 22:21:19 21 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.2 22:21:19 21 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.2 22:21:19 21 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.2 22:21:19 21 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:21:19 21 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:21:19 21 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:21:19 21 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:21:19 21 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:21:19 21 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:21:19 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:21:19 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:21:19 21 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:21:19 21 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:21:19 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:21:19 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:21:19 21 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:21:19 21 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:21:19 21 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:21:19 21 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:21:19 21 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:21:19 21 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:21:19 21 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:21:19 21 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:21:19 21 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 22:21:19 21 Jan 2017 UTC 22:27:56 21 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 12000 22:27:56 21 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 22:28:07 21 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 12077 22:28:07 21 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:28:07 21 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:28:07 21 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:28:07 21 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:28:07 21 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170121122806 ] 22:28:07 21 Jan 2017 UTC: INFO: Base.py(1333): PID:12085 22:28:07 21 Jan 2017 UTC: INFO: Base.py(1375): Started processing 22:28:07 21 Jan 2017 UTC 22:28:07 21 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:28:07 21 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:28:07 21 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:28:07 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:28:07 21 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:3 22:28:07 21 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:3 2118.9300 -15752.6680 01/21/17 22:26:32 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:28:07 21 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:3 22:28:07 21 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:3 2118.9300 -15752.6680 01/21/17 22:26:32 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:28:07 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:28:07 21 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:3 22:28:07 21 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:3 2118.9300 -15752.6680 01/21/17 22:26:32 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 22:28:07 21 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:28:07 21 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:28:08 21 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:28:08 21 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:28:08 21 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:28:08 21 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:28:08 21 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:28:08 21 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:28:08 21 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 22:28:08 21 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 22:28:08 21 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 22:28:08 21 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.3 22:28:08 21 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.3 22:28:08 21 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.3 22:28:08 21 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:28:08 21 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:28:08 21 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:28:08 21 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:28:08 21 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:28:08 21 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:28:08 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:28:08 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:28:08 21 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:28:08 21 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:28:08 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:28:08 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:28:08 21 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:28:08 21 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:28:08 21 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:28:08 21 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:28:08 21 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:28:08 21 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:28:08 21 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:28:08 21 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:28:08 21 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 22:28:08 21 Jan 2017 UTC 22:45:52 21 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 12838 22:45:52 21 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 22:46:50 21 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 12973 22:46:50 21 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:46:50 21 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:46:50 21 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:46:50 21 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:46:50 21 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170121124649 ] 22:46:50 21 Jan 2017 UTC: INFO: Base.py(1333): PID:12981 22:46:50 21 Jan 2017 UTC: INFO: Base.py(1375): Started processing 22:46:50 21 Jan 2017 UTC 22:46:50 21 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:46:50 21 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:46:50 21 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:46:50 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:46:50 21 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:5 22:46:50 21 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:5 2118.9660 -15752.6910 01/21/17 22:44:29 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:46:50 21 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:5 22:46:50 21 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:5 2118.9660 -15752.6910 01/21/17 22:44:29 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:46:50 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:46:50 21 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:5 22:46:50 21 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:5 2118.9660 -15752.6910 01/21/17 22:44:29 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 22:46:50 21 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:46:50 21 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:46:50 21 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:46:50 21 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:46:50 21 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:46:50 21 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:46:50 21 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:46:50 21 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:46:50 21 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 22:46:50 21 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 22:46:50 21 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 22:46:50 21 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.5 22:46:50 21 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.5 22:46:50 21 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.5 22:46:50 21 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:46:50 21 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:46:50 21 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:46:50 21 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:46:50 21 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:46:50 21 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:46:50 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:46:50 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:46:50 21 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:46:50 21 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:46:50 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:46:50 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:46:50 21 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:46:50 21 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:46:50 21 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:46:50 21 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:46:50 21 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:46:50 21 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:46:50 21 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:46:50 21 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:46:50 21 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 22:46:50 21 Jan 2017 UTC 22:55:33 21 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 13565 22:55:33 21 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 22:55:48 21 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 13650 22:55:48 21 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:55:48 21 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:55:48 21 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:55:48 21 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:55:48 21 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170121125548 ] 22:55:48 21 Jan 2017 UTC: INFO: Base.py(1333): PID:13658 22:55:48 21 Jan 2017 UTC: INFO: Base.py(1375): Started processing 22:55:48 21 Jan 2017 UTC 22:55:48 21 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:55:48 21 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:55:48 21 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:55:48 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:55:48 21 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:2 call_cycle:6 22:55:48 21 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:2 call_cycle:6 2118.9330 -15752.6440 01/21/17 22:52:32 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:55:49 21 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:2 call_cycle:6 22:55:49 21 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:2 call_cycle:6 2118.9330 -15752.6440 01/21/17 22:52:32 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:55:49 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:55:49 21 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:2 call_cycle:6 22:55:49 21 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:2 call_cycle:6 2118.9330 -15752.6440 01/21/17 22:52:32 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 22:55:49 21 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:55:49 21 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:55:49 21 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:55:49 21 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:55:49 21 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:55:49 21 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:55:49 21 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:55:49 21 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:55:49 21 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 22:55:49 21 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 22:55:49 21 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 22:55:49 21 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.6 22:55:49 21 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.6 22:55:49 21 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.6 22:55:49 21 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:55:49 21 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:55:49 21 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:55:49 21 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:55:49 21 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:55:49 21 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:55:49 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:55:49 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:55:49 21 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:55:49 21 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:55:49 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:55:49 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:55:49 21 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:55:49 21 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:55:49 21 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:55:49 21 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:55:49 21 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:55:49 21 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:55:49 21 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:55:49 21 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:55:49 21 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 22:55:49 21 Jan 2017 UTC 23:03:01 21 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 14480 23:03:01 21 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 23:04:08 21 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 14583 23:04:08 21 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:04:08 21 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:04:08 21 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:04:08 21 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:04:08 21 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170121130407 ] 23:04:08 21 Jan 2017 UTC: INFO: Base.py(1333): PID:14591 23:04:08 21 Jan 2017 UTC: INFO: Base.py(1375): Started processing 23:04:08 21 Jan 2017 UTC 23:04:08 21 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:04:08 21 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:04:08 21 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:04:08 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:04:08 21 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:7 23:04:08 21 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:7 2118.9300 -15752.6460 01/21/17 23:01:09 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 23:04:08 21 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:7 23:04:08 21 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:7 2118.9300 -15752.6460 01/21/17 23:01:09 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 23:04:08 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:04:08 21 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:7 23:04:08 21 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:7 2118.9300 -15752.6460 01/21/17 23:01:09 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 23:04:08 21 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:04:08 21 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:04:08 21 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:04:08 21 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:04:08 21 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:04:08 21 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:04:08 21 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:04:08 21 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:04:08 21 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 23:04:08 21 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 23:04:08 21 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 23:04:08 21 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.7 23:04:08 21 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.7 23:04:08 21 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.7 23:04:08 21 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:04:08 21 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:04:08 21 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:04:08 21 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:04:08 21 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:04:08 21 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:04:08 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:04:08 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:04:08 21 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:04:08 21 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:04:08 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:04:08 21 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:04:08 21 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:04:08 21 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:04:08 21 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:04:08 21 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:04:08 21 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:04:08 21 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:04:08 21 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:04:08 21 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:04:08 21 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 23:04:08 21 Jan 2017 UTC 05:14:19 22 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 24867 05:14:20 22 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 05:15:09 22 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 24951 05:15:09 22 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:15:09 22 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:15:09 22 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:15:09 22 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:15:09 22 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170121191508 ] 05:15:09 22 Jan 2017 UTC: INFO: Base.py(1333): PID:24958 05:15:09 22 Jan 2017 UTC: INFO: Base.py(1375): Started processing 05:15:09 22 Jan 2017 UTC 05:15:09 22 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:15:09 22 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:15:09 22 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:15:09 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:15:09 22 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:10 05:15:09 22 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:10 2118.9300 -15752.6460 01/22/17 05:12:56 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 05:15:09 22 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:10 05:15:09 22 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:10 2118.9300 -15752.6460 01/22/17 05:12:56 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 05:15:09 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:15:09 22 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:10 05:15:09 22 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:10 2118.9300 -15752.6460 01/22/17 05:12:56 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 05:15:09 22 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:15:09 22 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:15:10 22 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:15:10 22 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:15:10 22 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:15:10 22 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:15:10 22 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:15:10 22 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:15:10 22 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 05:15:10 22 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 05:15:10 22 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 05:15:10 22 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.10 05:15:10 22 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.10 05:15:10 22 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.10 05:15:10 22 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:15:10 22 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:15:10 22 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:15:10 22 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:15:10 22 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:15:10 22 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:15:10 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:15:10 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:15:10 22 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:15:10 22 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:15:10 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:15:10 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:15:10 22 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:15:10 22 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:15:10 22 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:15:10 22 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:15:10 22 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:15:10 22 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:15:10 22 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:15:10 22 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:15:10 22 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 05:15:10 22 Jan 2017 UTC 07:17:24 22 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 28223 07:17:24 22 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 07:18:16 22 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 28321 07:18:16 22 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:18:16 22 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:18:16 22 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:18:16 22 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:18:16 22 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170121211816 ] 07:18:16 22 Jan 2017 UTC: INFO: Base.py(1333): PID:28328 07:18:16 22 Jan 2017 UTC: INFO: Base.py(1375): Started processing 07:18:16 22 Jan 2017 UTC 07:18:16 22 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:18:16 22 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:18:16 22 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:18:16 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:18:16 22 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:11 07:18:16 22 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:11 2118.9270 -15752.6460 01/22/17 07:16:01 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 07:18:16 22 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:11 07:18:16 22 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:11 2118.9270 -15752.6460 01/22/17 07:16:01 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 07:18:16 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:18:16 22 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:11 07:18:16 22 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:11 2118.9270 -15752.6460 01/22/17 07:16:01 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 07:18:17 22 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:18:17 22 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:18:17 22 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:18:17 22 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:18:17 22 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:18:17 22 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:18:17 22 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:18:17 22 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:18:17 22 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 07:18:17 22 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 07:18:17 22 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 07:18:17 22 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.11 07:18:17 22 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.11 07:18:17 22 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.11 07:18:17 22 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:18:17 22 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:18:17 22 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:18:17 22 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:18:17 22 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:18:17 22 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:18:17 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:18:17 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:18:17 22 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:18:17 22 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:18:17 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:18:17 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:18:17 22 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:18:17 22 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:18:17 22 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:18:17 22 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:18:17 22 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:18:17 22 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:18:17 22 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:18:17 22 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:18:17 22 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 07:18:17 22 Jan 2017 UTC 09:20:23 22 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 849 09:20:23 22 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 09:21:23 22 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 973 09:21:23 22 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:21:23 22 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:21:23 22 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:21:23 22 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:21:23 22 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170121232122 ] 09:21:23 22 Jan 2017 UTC: INFO: Base.py(1333): PID:980 09:21:23 22 Jan 2017 UTC: INFO: Base.py(1375): Started processing 09:21:23 22 Jan 2017 UTC 09:21:23 22 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:21:23 22 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:21:23 22 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:21:23 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:21:23 22 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:12 09:21:23 22 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:12 2118.9300 -15752.6460 01/22/17 09:18:44 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 09:21:23 22 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:12 09:21:23 22 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:12 2118.9300 -15752.6460 01/22/17 09:18:44 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 09:21:23 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:21:23 22 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:12 09:21:23 22 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:12 2118.9300 -15752.6460 01/22/17 09:18:44 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 09:21:23 22 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:21:23 22 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:21:24 22 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:21:24 22 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:21:24 22 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:21:24 22 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:21:24 22 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:21:24 22 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:21:24 22 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 09:21:24 22 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 09:21:24 22 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 09:21:24 22 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.12 09:21:24 22 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.12 09:21:24 22 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.12 09:21:24 22 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:21:24 22 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:21:24 22 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:21:24 22 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:21:24 22 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:21:24 22 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:21:24 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:21:24 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:21:24 22 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:21:24 22 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:21:24 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:21:24 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:21:24 22 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:21:24 22 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:21:24 22 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:21:24 22 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:21:24 22 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:21:24 22 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:21:24 22 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:21:24 22 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:21:24 22 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 09:21:24 22 Jan 2017 UTC 11:23:48 22 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 8466 11:23:48 22 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 11:24:36 22 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 8610 11:24:36 22 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:24:36 22 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 11:24:36 22 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 11:24:36 22 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:24:36 22 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170122012436 ] 11:24:36 22 Jan 2017 UTC: INFO: Base.py(1333): PID:8617 11:24:36 22 Jan 2017 UTC: INFO: Base.py(1375): Started processing 11:24:36 22 Jan 2017 UTC 11:24:36 22 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 11:24:36 22 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 11:24:36 22 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:24:36 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:24:36 22 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:13 11:24:36 22 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:13 2118.9330 -15752.6470 01/22/17 11:22:01 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 11:24:37 22 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:13 11:24:37 22 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:13 2118.9330 -15752.6470 01/22/17 11:22:01 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 11:24:37 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:24:37 22 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:13 11:24:37 22 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:13 2118.9330 -15752.6470 01/22/17 11:22:01 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 11:24:37 22 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:24:37 22 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:24:37 22 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:24:37 22 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:24:37 22 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 11:24:37 22 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:24:37 22 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:24:37 22 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 11:24:37 22 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 11:24:37 22 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 11:24:37 22 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 11:24:37 22 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.13 11:24:37 22 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.13 11:24:37 22 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.13 11:24:37 22 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:24:37 22 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:24:37 22 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:24:37 22 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:24:37 22 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:24:37 22 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:24:37 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:24:37 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:24:37 22 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:24:37 22 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:24:37 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:24:37 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:24:37 22 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:24:37 22 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 11:24:37 22 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 11:24:37 22 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 11:24:37 22 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 11:24:37 22 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:24:37 22 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:24:37 22 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:24:37 22 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 11:24:37 22 Jan 2017 UTC 13:26:36 22 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 19146 13:26:36 22 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 13:27:22 22 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 19284 13:27:22 22 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:27:22 22 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:27:22 22 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:27:22 22 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:27:22 22 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170122032722 ] 13:27:22 22 Jan 2017 UTC: INFO: Base.py(1333): PID:19291 13:27:22 22 Jan 2017 UTC: INFO: Base.py(1375): Started processing 13:27:22 22 Jan 2017 UTC 13:27:22 22 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:27:22 22 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:27:22 22 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:27:22 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:27:22 22 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:14 13:27:22 22 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:14 2118.9330 -15752.6280 01/22/17 13:25:02 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 13:27:22 22 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:14 13:27:22 22 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:14 2118.9330 -15752.6280 01/22/17 13:25:02 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 13:27:22 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:27:22 22 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:14 13:27:22 22 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:14 2118.9330 -15752.6280 01/22/17 13:25:02 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 13:27:23 22 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:27:23 22 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:27:23 22 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:27:23 22 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:27:23 22 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:27:23 22 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:27:23 22 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:27:23 22 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:27:23 22 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 13:27:23 22 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 13:27:23 22 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 13:27:23 22 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.14 13:27:23 22 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.14 13:27:23 22 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.14 13:27:23 22 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:27:23 22 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:27:23 22 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:27:23 22 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:27:23 22 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:27:23 22 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:27:23 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:27:23 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:27:23 22 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:27:23 22 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:27:23 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:27:23 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:27:23 22 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:27:23 22 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:27:23 22 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:27:23 22 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:27:23 22 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:27:23 22 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:27:23 22 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:27:23 22 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:27:23 22 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 13:27:23 22 Jan 2017 UTC 15:29:37 22 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 30231 15:29:37 22 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 15:30:26 22 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 30521 15:30:26 22 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 15:30:26 22 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 15:30:26 22 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 15:30:26 22 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 15:30:26 22 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170122053026 ] 15:30:26 22 Jan 2017 UTC: INFO: Base.py(1333): PID:30529 15:30:26 22 Jan 2017 UTC: INFO: Base.py(1375): Started processing 15:30:26 22 Jan 2017 UTC 15:30:26 22 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 15:30:27 22 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 15:30:27 22 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 15:30:27 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:30:27 22 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:15 15:30:27 22 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:15 2118.9270 -15752.6460 01/22/17 15:28:01 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 15:30:27 22 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:15 15:30:27 22 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:15 2118.9270 -15752.6460 01/22/17 15:28:01 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 15:30:27 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:30:27 22 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:15 15:30:27 22 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:15 2118.9270 -15752.6460 01/22/17 15:28:01 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 15:30:27 22 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:30:27 22 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 15:30:27 22 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 15:30:27 22 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 15:30:27 22 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 15:30:27 22 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 15:30:27 22 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 15:30:27 22 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 15:30:27 22 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 15:30:27 22 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 15:30:27 22 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 15:30:27 22 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.15 15:30:27 22 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.15 15:30:27 22 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.15 15:30:27 22 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 15:30:27 22 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 15:30:27 22 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 15:30:27 22 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 15:30:27 22 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 15:30:27 22 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 15:30:27 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:30:27 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:30:27 22 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:30:27 22 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 15:30:27 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:30:27 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:30:27 22 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:30:27 22 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 15:30:27 22 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 15:30:27 22 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 15:30:27 22 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 15:30:27 22 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 15:30:27 22 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 15:30:27 22 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 15:30:27 22 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 15:30:27 22 Jan 2017 UTC 17:32:24 22 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 8885 17:32:24 22 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 17:32:37 22 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 8974 17:32:37 22 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:32:37 22 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:32:37 22 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:32:37 22 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:32:37 22 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170122073236 ] 17:32:37 22 Jan 2017 UTC: INFO: Base.py(1333): PID:8982 17:32:37 22 Jan 2017 UTC: INFO: Base.py(1375): Started processing 17:32:37 22 Jan 2017 UTC 17:32:37 22 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:32:37 22 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:32:37 22 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:32:37 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:32:37 22 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:16 17:32:37 22 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:16 2118.9310 -15752.6460 01/22/17 17:30:50 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 17:32:37 22 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:16 17:32:37 22 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:16 2118.9310 -15752.6460 01/22/17 17:30:50 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 17:32:37 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:32:37 22 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:16 17:32:37 22 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:16 2118.9310 -15752.6460 01/22/17 17:30:50 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 17:32:37 22 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:32:37 22 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:32:38 22 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:32:38 22 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:32:38 22 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:32:38 22 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:32:38 22 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:32:38 22 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:32:38 22 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 17:32:38 22 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 17:32:38 22 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 17:32:38 22 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.16 17:32:38 22 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.16 17:32:38 22 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.16 17:32:38 22 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:32:38 22 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:32:38 22 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:32:38 22 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:32:38 22 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:32:38 22 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:32:38 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:32:38 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:32:38 22 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:32:38 22 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:32:38 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:32:38 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:32:38 22 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:32:38 22 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:32:38 22 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:32:38 22 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:32:38 22 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:32:38 22 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:32:38 22 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:32:38 22 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:32:38 22 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 17:32:38 22 Jan 2017 UTC 19:37:18 22 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 19713 19:37:18 22 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 19:38:08 22 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 19827 19:38:08 22 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:38:08 22 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:38:08 22 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:38:08 22 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:38:08 22 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170122093808 ] 19:38:08 22 Jan 2017 UTC: INFO: Base.py(1333): PID:19834 19:38:08 22 Jan 2017 UTC: INFO: Base.py(1375): Started processing 19:38:08 22 Jan 2017 UTC 19:38:08 22 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:38:08 22 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:38:08 22 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:38:08 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:38:08 22 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:2 call_cycle:17 19:38:08 22 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:2 call_cycle:17 2118.9300 -15752.6460 01/22/17 19:33:25 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 19:38:08 22 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:2 call_cycle:17 19:38:08 22 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:2 call_cycle:17 2118.9300 -15752.6460 01/22/17 19:33:25 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 19:38:09 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:38:09 22 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:2 call_cycle:17 19:38:09 22 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:2 call_cycle:17 2118.9300 -15752.6460 01/22/17 19:33:25 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 19:38:09 22 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:38:09 22 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:38:09 22 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:38:09 22 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:38:09 22 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:38:09 22 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:38:09 22 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:38:09 22 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:38:09 22 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 19:38:09 22 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 19:38:09 22 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 19:38:09 22 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.17 19:38:09 22 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.17 19:38:09 22 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.17 19:38:09 22 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:38:09 22 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:38:09 22 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:38:09 22 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:38:09 22 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:38:09 22 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:38:09 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:38:09 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:38:09 22 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:38:09 22 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:38:09 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:38:09 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:38:09 22 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:38:09 22 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:38:09 22 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:38:09 22 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:38:09 22 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:38:09 22 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:38:09 22 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:38:09 22 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:38:09 22 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 19:38:09 22 Jan 2017 UTC 22:39:52 22 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 30210 22:39:52 22 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 22:40:40 22 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 30407 22:40:40 22 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:40:40 22 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:40:40 22 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:40:40 22 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:40:40 22 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170122124039 ] 22:40:40 22 Jan 2017 UTC: INFO: Base.py(1333): PID:30414 22:40:40 22 Jan 2017 UTC: INFO: Base.py(1375): Started processing 22:40:40 22 Jan 2017 UTC 22:40:40 22 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:40:40 22 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:40:40 22 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:40:40 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:40:40 22 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:18 22:40:40 22 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:18 2117.8120 -15812.7430 01/22/17 22:38:34 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:40:40 22 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:18 22:40:40 22 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:18 2117.8120 -15812.7430 01/22/17 22:38:34 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:40:40 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:40:40 22 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:18 22:40:40 22 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:18 2117.8120 -15812.7430 01/22/17 22:38:34 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 22:40:40 22 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:40:40 22 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:40:41 22 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:40:41 22 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:40:41 22 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:40:41 22 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:40:41 22 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:40:41 22 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:40:41 22 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 22:40:41 22 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 22:40:41 22 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 22:40:41 22 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.18 22:40:41 22 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.18 22:40:41 22 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.18 22:40:41 22 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:40:41 22 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:40:41 22 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:40:41 22 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:40:41 22 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:40:41 22 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:40:41 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:40:41 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:40:41 22 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:40:41 22 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:40:41 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:40:41 22 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:40:41 22 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:40:41 22 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:40:41 22 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:40:41 22 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:40:41 22 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:40:41 22 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:40:41 22 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:40:41 22 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:40:41 22 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 22:40:41 22 Jan 2017 UTC 01:43:06 23 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 9124 01:43:06 23 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 01:43:53 23 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 9236 01:43:53 23 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:43:53 23 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:43:53 23 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:43:53 23 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:43:53 23 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170122154353 ] 01:43:53 23 Jan 2017 UTC: INFO: Base.py(1333): PID:9243 01:43:53 23 Jan 2017 UTC: INFO: Base.py(1375): Started processing 01:43:53 23 Jan 2017 UTC 01:43:53 23 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:43:53 23 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:43:53 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:43:53 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:43:53 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:19 01:43:53 23 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:19 2120.5360 -15816.3620 01/23/17 01:41:31 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 01:43:54 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:19 01:43:54 23 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:19 2120.5360 -15816.3620 01/23/17 01:41:31 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 01:43:54 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:43:54 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:19 01:43:54 23 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:19 2120.5360 -15816.3620 01/23/17 01:41:31 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 01:43:54 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:43:54 23 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:43:54 23 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:43:54 23 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:43:54 23 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:43:54 23 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:43:54 23 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:43:54 23 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:43:54 23 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 01:43:54 23 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 01:43:54 23 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 01:43:54 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.19 01:43:54 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.19 01:43:54 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.19 01:43:54 23 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:43:54 23 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:43:54 23 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:43:54 23 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:43:54 23 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:43:54 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:43:54 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:43:54 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:43:54 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:43:54 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:43:54 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:43:54 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:43:54 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:43:54 23 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:43:54 23 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:43:54 23 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:43:54 23 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:43:54 23 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:43:54 23 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:43:54 23 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:43:54 23 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 01:43:54 23 Jan 2017 UTC 04:45:49 23 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 19508 04:45:49 23 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 04:46:36 23 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 19623 04:46:36 23 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:46:36 23 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:46:36 23 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:46:36 23 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:46:36 23 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170122184635 ] 04:46:36 23 Jan 2017 UTC: INFO: Base.py(1333): PID:19630 04:46:36 23 Jan 2017 UTC: INFO: Base.py(1375): Started processing 04:46:36 23 Jan 2017 UTC 04:46:36 23 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:46:36 23 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:46:36 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:46:36 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:46:36 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:20 04:46:36 23 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:20 2135.8590 -15819.8070 01/23/17 04:44:29 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 04:46:36 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:20 04:46:36 23 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:20 2135.8590 -15819.8070 01/23/17 04:44:29 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 04:46:36 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:46:36 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:20 04:46:36 23 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:20 2135.8590 -15819.8070 01/23/17 04:44:29 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 04:46:36 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:46:36 23 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:46:36 23 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:46:36 23 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:46:36 23 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:46:36 23 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:46:36 23 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:46:36 23 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:46:36 23 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 04:46:36 23 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 04:46:36 23 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 04:46:36 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.20 04:46:36 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.20 04:46:36 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.20 04:46:36 23 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:46:36 23 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:46:36 23 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:46:36 23 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:46:36 23 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:46:36 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:46:36 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:46:36 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:46:36 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:46:36 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:46:36 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:46:36 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:46:36 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:46:36 23 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:46:36 23 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:46:36 23 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:46:36 23 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:46:36 23 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:46:36 23 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:46:36 23 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:46:36 23 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 04:46:36 23 Jan 2017 UTC 10:51:48 23 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 12128 10:51:48 23 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 10:52:36 23 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 12206 10:52:36 23 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:52:36 23 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:52:36 23 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:52:36 23 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:52:36 23 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170123005235 ] 10:52:36 23 Jan 2017 UTC: INFO: Base.py(1333): PID:12214 10:52:36 23 Jan 2017 UTC: INFO: Base.py(1375): Started processing 10:52:36 23 Jan 2017 UTC 10:52:36 23 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:52:36 23 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:52:36 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:52:36 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:52:36 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:22 10:52:36 23 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:22 2235.6660 -15802.6880 01/23/17 10:50:32 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 10:52:36 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:22 10:52:36 23 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:22 2235.6660 -15802.6880 01/23/17 10:50:32 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 10:52:36 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:52:36 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:22 10:52:36 23 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:22 2235.6660 -15802.6880 01/23/17 10:50:32 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 10:52:36 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:52:36 23 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:52:37 23 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:52:37 23 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:52:37 23 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:52:37 23 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:52:37 23 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:52:37 23 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:52:37 23 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 10:52:37 23 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 10:52:37 23 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 10:52:37 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.22 10:52:37 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.22 10:52:37 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.22 10:52:37 23 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:52:37 23 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:52:37 23 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:52:37 23 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:52:37 23 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:52:37 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:52:37 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:52:37 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:52:37 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:52:37 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:52:37 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:52:37 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:52:37 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:52:37 23 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:52:37 23 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:52:37 23 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:52:37 23 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:52:37 23 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:52:37 23 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:52:37 23 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:52:37 23 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 10:52:37 23 Jan 2017 UTC 13:54:49 23 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 16858 13:54:49 23 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 13:55:36 23 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 16928 13:55:36 23 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:55:36 23 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:55:36 23 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:55:36 23 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:55:36 23 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170123035535 ] 13:55:36 23 Jan 2017 UTC: INFO: Base.py(1333): PID:16935 13:55:36 23 Jan 2017 UTC: INFO: Base.py(1375): Started processing 13:55:36 23 Jan 2017 UTC 13:55:36 23 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:55:36 23 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:55:36 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:55:36 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:55:36 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:23 13:55:36 23 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:23 2245.0180 -15759.9560 01/23/17 13:53:25 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 13:55:36 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:23 13:55:36 23 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:23 2245.0180 -15759.9560 01/23/17 13:53:25 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 13:55:36 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:55:36 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:23 13:55:36 23 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:23 2245.0180 -15759.9560 01/23/17 13:53:25 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 13:55:36 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:55:36 23 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:55:37 23 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:55:37 23 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:55:37 23 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:55:37 23 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:55:37 23 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:55:37 23 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:55:37 23 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 13:55:37 23 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 13:55:37 23 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 13:55:37 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.23 13:55:37 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.23 13:55:37 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.23 13:55:37 23 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:55:37 23 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:55:37 23 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:55:37 23 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:55:37 23 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:55:37 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:55:37 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:55:37 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:55:37 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:55:37 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:55:37 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:55:37 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:55:37 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:55:37 23 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:55:37 23 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:55:37 23 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:55:37 23 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:55:37 23 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:55:37 23 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:55:37 23 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:55:37 23 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 13:55:37 23 Jan 2017 UTC 16:57:45 23 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 21756 16:57:45 23 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 16:58:31 23 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 21835 16:58:31 23 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:58:31 23 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:58:31 23 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:58:31 23 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:58:31 23 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170123065830 ] 16:58:31 23 Jan 2017 UTC: INFO: Base.py(1333): PID:21842 16:58:31 23 Jan 2017 UTC: INFO: Base.py(1375): Started processing 16:58:31 23 Jan 2017 UTC 16:58:31 23 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:58:31 23 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:58:31 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:58:31 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:58:31 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:24 16:58:31 23 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:24 2244.9840 -15800.0110 01/23/17 16:56:25 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 16:58:31 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:24 16:58:31 23 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:24 2244.9840 -15800.0110 01/23/17 16:56:25 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 16:58:31 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:58:31 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:24 16:58:31 23 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:24 2244.9840 -15800.0110 01/23/17 16:56:25 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 16:58:31 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:58:31 23 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:58:32 23 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:58:32 23 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:58:32 23 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:58:32 23 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:58:32 23 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:58:32 23 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:58:32 23 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 16:58:32 23 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 16:58:32 23 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 16:58:32 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.24 16:58:32 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.24 16:58:32 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.24 16:58:32 23 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:58:32 23 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:58:32 23 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:58:32 23 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:58:32 23 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:58:32 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:58:32 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:58:32 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:58:32 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:58:32 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:58:32 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:58:32 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:58:32 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:58:32 23 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:58:32 23 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:58:32 23 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:58:32 23 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:58:32 23 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:58:32 23 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:58:32 23 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:58:32 23 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 16:58:32 23 Jan 2017 UTC 20:00:23 23 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 26510 20:00:23 23 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 20:01:13 23 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 26767 20:01:13 23 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:01:13 23 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:01:13 23 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:01:13 23 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:01:13 23 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170123100112 ] 20:01:13 23 Jan 2017 UTC: INFO: Base.py(1333): PID:26774 20:01:13 23 Jan 2017 UTC: INFO: Base.py(1375): Started processing 20:01:13 23 Jan 2017 UTC 20:01:13 23 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:01:13 23 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:01:13 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:01:13 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:01:13 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:25 20:01:13 23 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:25 2244.9920 -15800.0270 01/23/17 19:59:02 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 20:01:13 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:25 20:01:13 23 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:25 2244.9920 -15800.0270 01/23/17 19:59:02 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 20:01:13 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:01:13 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:25 20:01:13 23 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:25 2244.9920 -15800.0270 01/23/17 19:59:02 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 20:01:13 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:01:13 23 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:01:13 23 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:01:14 23 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:01:14 23 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:01:14 23 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:01:14 23 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:01:14 23 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:01:14 23 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 20:01:14 23 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 20:01:14 23 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 20:01:14 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.25 20:01:14 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.25 20:01:14 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.25 20:01:14 23 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:01:14 23 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:01:14 23 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:01:14 23 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:01:14 23 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:01:14 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:01:14 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:01:14 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:01:14 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:01:14 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:01:14 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:01:14 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:01:14 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:01:14 23 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:01:14 23 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:01:14 23 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:01:14 23 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:01:14 23 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:01:14 23 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:01:14 23 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:01:14 23 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 20:01:14 23 Jan 2017 UTC 23:03:18 23 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 32320 23:03:18 23 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 23:04:12 23 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 32401 23:04:12 23 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:04:12 23 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:04:12 23 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:04:12 23 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:04:12 23 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170123130411 ] 23:04:12 23 Jan 2017 UTC: INFO: Base.py(1333): PID:32409 23:04:12 23 Jan 2017 UTC: INFO: Base.py(1375): Started processing 23:04:12 23 Jan 2017 UTC 23:04:12 23 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:04:12 23 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:04:12 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:04:12 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:04:12 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:26 23:04:12 23 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:26 2245.0870 -15800.3840 01/23/17 23:02:01 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 23:04:12 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:26 23:04:12 23 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:26 2245.0870 -15800.3840 01/23/17 23:02:01 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 23:04:12 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:04:12 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:26 23:04:12 23 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:26 2245.0870 -15800.3840 01/23/17 23:02:01 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 23:04:12 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:04:12 23 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:04:13 23 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:04:13 23 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:04:13 23 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:04:13 23 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:04:13 23 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:04:13 23 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:04:13 23 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 23:04:13 23 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 23:04:13 23 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 23:04:13 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.26 23:04:13 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.26 23:04:13 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.26 23:04:13 23 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:04:13 23 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:04:13 23 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:04:13 23 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:04:13 23 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:04:13 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:04:13 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:04:13 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:04:13 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:04:13 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:04:13 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:04:13 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:04:13 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:04:13 23 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:04:13 23 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:04:13 23 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:04:13 23 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:04:13 23 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:04:13 23 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:04:13 23 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:04:13 23 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 23:04:13 23 Jan 2017 UTC 23:16:09 23 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 414 23:16:09 23 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 23:16:56 23 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 521 23:16:56 23 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:16:56 23 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:16:56 23 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:16:56 23 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:16:56 23 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170123131656 ] 23:16:56 23 Jan 2017 UTC: INFO: Base.py(1333): PID:530 23:16:56 23 Jan 2017 UTC: INFO: Base.py(1375): Started processing 23:16:56 23 Jan 2017 UTC 23:16:56 23 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:16:56 23 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:16:56 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:16:56 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:16:56 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:27 23:16:56 23 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:27 2244.9900 -15800.0160 01/23/17 23:14:38 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 23:16:56 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:27 23:16:56 23 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:27 2244.9900 -15800.0160 01/23/17 23:14:38 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 23:16:57 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:16:57 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:27 23:16:57 23 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:27 2244.9900 -15800.0160 01/23/17 23:14:38 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 23:16:57 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:16:57 23 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:16:57 23 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:16:57 23 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:16:57 23 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:16:57 23 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:16:57 23 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:16:57 23 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:16:57 23 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 23:16:57 23 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 23:16:57 23 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 23:16:57 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.27 23:16:57 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.27 23:16:57 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.27 23:16:57 23 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:16:57 23 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:16:57 23 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:16:57 23 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:16:57 23 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:16:57 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:16:57 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:16:57 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:16:57 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:16:57 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:16:57 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:16:57 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:16:57 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:16:57 23 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:16:57 23 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:16:57 23 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:16:57 23 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:16:57 23 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:16:57 23 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:16:57 23 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:16:57 23 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 23:16:57 23 Jan 2017 UTC 23:28:51 23 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 1143 23:28:51 23 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 23:29:42 23 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 1240 23:29:42 23 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:29:42 23 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:29:42 23 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:29:42 23 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:29:42 23 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170123132941 ] 23:29:42 23 Jan 2017 UTC: INFO: Base.py(1333): PID:1249 23:29:42 23 Jan 2017 UTC: INFO: Base.py(1375): Started processing 23:29:42 23 Jan 2017 UTC 23:29:42 23 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:29:42 23 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:29:42 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:29:42 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:29:42 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:28 23:29:42 23 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:28 2244.9960 -15800.0160 01/23/17 23:27:20 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 23:29:42 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:28 23:29:42 23 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:28 2244.9960 -15800.0160 01/23/17 23:27:20 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 23:29:42 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:29:42 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:28 23:29:42 23 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:28 2244.9960 -15800.0160 01/23/17 23:27:20 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 23:29:42 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:29:42 23 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:29:43 23 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:29:43 23 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:29:43 23 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:29:43 23 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:29:43 23 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:29:43 23 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:29:43 23 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 23:29:43 23 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 23:29:43 23 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 23:29:43 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.28 23:29:43 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.28 23:29:43 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.28 23:29:43 23 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:29:43 23 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:29:43 23 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:29:43 23 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:29:43 23 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:29:43 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:29:43 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:29:43 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:29:43 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:29:43 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:29:43 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:29:43 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:29:43 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:29:43 23 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:29:43 23 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:29:43 23 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:29:43 23 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:29:43 23 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:29:43 23 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:29:43 23 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:29:43 23 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 23:29:43 23 Jan 2017 UTC 23:38:30 23 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 1709 23:38:30 23 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 23:39:17 23 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 1800 23:39:17 23 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:39:17 23 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:39:17 23 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:39:17 23 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:39:17 23 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170123133917 ] 23:39:17 23 Jan 2017 UTC: INFO: Base.py(1333): PID:1813 23:39:17 23 Jan 2017 UTC: INFO: Base.py(1375): Started processing 23:39:17 23 Jan 2017 UTC 23:39:17 23 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:39:17 23 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:39:17 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:39:17 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:39:17 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:29 23:39:17 23 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:29 2245.0250 -15800.0220 01/23/17 23:37:08 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 23:39:18 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:29 23:39:18 23 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:29 2245.0250 -15800.0220 01/23/17 23:37:08 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 23:39:18 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:39:18 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:29 23:39:18 23 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:29 2245.0250 -15800.0220 01/23/17 23:37:08 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 23:39:18 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:39:18 23 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:39:18 23 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:39:18 23 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:39:18 23 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:39:18 23 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:39:18 23 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:39:18 23 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:39:18 23 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 23:39:18 23 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 23:39:18 23 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 23:39:18 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.29 23:39:18 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.29 23:39:18 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.29 23:39:18 23 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:39:18 23 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:39:18 23 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:39:18 23 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:39:18 23 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:39:18 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:39:18 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:39:18 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:39:18 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:39:18 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:39:18 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:39:18 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:39:18 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:39:18 23 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:39:18 23 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:39:18 23 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:39:18 23 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:39:18 23 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:39:18 23 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:39:18 23 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:39:18 23 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 23:39:18 23 Jan 2017 UTC 23:48:08 23 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 2188 23:48:08 23 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 23:48:55 23 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 2270 23:48:55 23 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:48:55 23 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:48:55 23 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:48:55 23 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:48:55 23 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170123134854 ] 23:48:55 23 Jan 2017 UTC: INFO: Base.py(1333): PID:2278 23:48:55 23 Jan 2017 UTC: INFO: Base.py(1375): Started processing 23:48:55 23 Jan 2017 UTC 23:48:55 23 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:48:55 23 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:48:55 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:48:55 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:48:55 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:30 23:48:55 23 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:30 2244.9980 -15800.0210 01/23/17 23:46:44 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 23:48:55 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:30 23:48:55 23 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:30 2244.9980 -15800.0210 01/23/17 23:46:44 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 23:48:55 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:48:55 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:30 23:48:55 23 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:30 2244.9980 -15800.0210 01/23/17 23:46:44 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 23:48:55 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:48:55 23 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:48:56 23 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:48:56 23 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:48:56 23 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:48:56 23 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:48:56 23 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:48:56 23 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:48:56 23 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 23:48:56 23 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 23:48:56 23 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 23:48:56 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.30 23:48:56 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.30 23:48:56 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.30 23:48:56 23 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:48:56 23 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:48:56 23 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:48:56 23 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:48:56 23 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:48:56 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:48:56 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:48:56 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:48:56 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:48:56 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:48:56 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:48:56 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:48:56 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:48:56 23 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:48:56 23 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:48:56 23 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:48:56 23 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:48:56 23 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:48:56 23 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:48:56 23 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:48:56 23 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 23:48:56 23 Jan 2017 UTC 23:57:41 23 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 2745 23:57:41 23 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 23:58:39 23 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 2832 23:58:39 23 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:58:39 23 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:58:39 23 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:58:39 23 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:58:39 23 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170123135838 ] 23:58:39 23 Jan 2017 UTC: INFO: Base.py(1333): PID:2840 23:58:39 23 Jan 2017 UTC: INFO: Base.py(1375): Started processing 23:58:39 23 Jan 2017 UTC 23:58:39 23 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:58:39 23 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:58:39 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:58:39 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:58:39 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:31 23:58:39 23 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:31 2245.0000 -15800.0190 01/23/17 23:56:20 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 23:58:39 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:31 23:58:39 23 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:31 2245.0000 -15800.0190 01/23/17 23:56:20 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 23:58:39 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:58:39 23 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:31 23:58:39 23 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:31 2245.0000 -15800.0190 01/23/17 23:56:20 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 23:58:39 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:58:39 23 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:58:40 23 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:58:40 23 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:58:40 23 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:58:40 23 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:58:40 23 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:58:40 23 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:58:40 23 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 23:58:40 23 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 23:58:40 23 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 23:58:40 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.31 23:58:40 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.31 23:58:40 23 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.31 23:58:40 23 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:58:40 23 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:58:40 23 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:58:40 23 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:58:40 23 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:58:40 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:58:40 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:58:40 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:58:40 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:58:40 23 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:58:40 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:58:40 23 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:58:40 23 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:58:40 23 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:58:40 23 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:58:40 23 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:58:40 23 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:58:40 23 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:58:40 23 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:58:40 23 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:58:40 23 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 23:58:40 23 Jan 2017 UTC 00:06:24 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 3889 00:06:24 24 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 00:07:15 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 4003 00:07:15 24 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:07:15 24 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:07:15 24 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:07:15 24 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:07:15 24 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170123140715 ] 00:07:15 24 Jan 2017 UTC: INFO: Base.py(1333): PID:4011 00:07:15 24 Jan 2017 UTC: INFO: Base.py(1375): Started processing 00:07:15 24 Jan 2017 UTC 00:07:15 24 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:07:15 24 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:07:15 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:07:15 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:07:15 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:32 00:07:15 24 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:32 2245.0110 -15800.0210 01/24/17 00:05:02 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 00:07:16 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:32 00:07:16 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:32 2245.0110 -15800.0210 01/24/17 00:05:02 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 00:07:16 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:07:16 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:32 00:07:16 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:32 2245.0110 -15800.0210 01/24/17 00:05:02 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 00:07:16 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:07:16 24 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:07:16 24 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:07:16 24 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:07:16 24 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:07:16 24 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:07:16 24 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:07:16 24 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:07:16 24 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 00:07:16 24 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 00:07:16 24 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 00:07:16 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.32 00:07:16 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.32 00:07:16 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.32 00:07:16 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:07:16 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:07:16 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:07:16 24 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:07:16 24 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:07:16 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:07:16 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:07:16 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:07:16 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:07:16 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:07:16 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:07:16 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:07:16 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:07:16 24 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:07:16 24 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:07:16 24 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:07:16 24 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:07:16 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:07:16 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:07:16 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:07:16 24 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 00:07:16 24 Jan 2017 UTC 00:15:06 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 4798 00:15:06 24 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 00:15:54 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 4885 00:15:54 24 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:15:54 24 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:15:54 24 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:15:54 24 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:15:54 24 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170123141554 ] 00:15:54 24 Jan 2017 UTC: INFO: Base.py(1333): PID:4892 00:15:54 24 Jan 2017 UTC: INFO: Base.py(1375): Started processing 00:15:54 24 Jan 2017 UTC 00:15:54 24 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:15:55 24 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:15:55 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:15:55 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:15:55 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:33 00:15:55 24 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:33 2245.0220 -15800.0210 01/24/17 00:13:44 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 00:15:55 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:33 00:15:55 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:33 2245.0220 -15800.0210 01/24/17 00:13:44 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 00:15:55 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:15:55 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:33 00:15:55 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:33 2245.0220 -15800.0210 01/24/17 00:13:44 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 00:15:55 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:15:55 24 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:15:55 24 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:15:55 24 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:15:55 24 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:15:55 24 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:15:55 24 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:15:55 24 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:15:55 24 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 00:15:55 24 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 00:15:55 24 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 00:15:55 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.33 00:15:55 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.33 00:15:55 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.33 00:15:55 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:15:55 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:15:55 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:15:55 24 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:15:55 24 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:15:55 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:15:55 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:15:55 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:15:55 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:15:55 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:15:55 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:15:55 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:15:55 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:15:55 24 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:15:55 24 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:15:55 24 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:15:55 24 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:15:55 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:15:55 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:15:55 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:15:55 24 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 00:15:55 24 Jan 2017 UTC 00:32:44 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 5727 00:32:44 24 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 00:33:36 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 5820 00:33:36 24 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:33:36 24 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:33:36 24 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:33:36 24 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:33:36 24 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170123143335 ] 00:33:36 24 Jan 2017 UTC: INFO: Base.py(1333): PID:5828 00:33:36 24 Jan 2017 UTC: INFO: Base.py(1375): Started processing 00:33:36 24 Jan 2017 UTC 00:33:36 24 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:33:36 24 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:33:36 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:33:36 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:33:36 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:35 00:33:36 24 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:35 2245.0200 -15800.0250 01/24/17 00:31:20 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 00:33:41 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:35 00:33:41 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:35 2245.0200 -15800.0250 01/24/17 00:31:20 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 00:33:41 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:33:41 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:35 00:33:41 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:35 2245.0200 -15800.0250 01/24/17 00:31:20 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 00:33:41 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:33:41 24 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:33:42 24 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:33:42 24 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:33:42 24 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:33:42 24 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:33:42 24 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:33:42 24 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:33:42 24 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 00:33:42 24 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 00:33:42 24 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 00:33:42 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.35 00:33:42 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.35 00:33:42 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.35 00:33:42 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:33:42 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:33:42 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:33:42 24 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:33:42 24 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:33:42 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:33:42 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:33:42 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:33:42 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:33:42 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:33:42 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:33:42 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:33:42 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:33:42 24 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:33:42 24 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:33:42 24 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:33:42 24 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:33:42 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:33:42 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:33:42 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:33:42 24 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 00:33:42 24 Jan 2017 UTC 00:41:35 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 6268 00:41:35 24 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 00:42:25 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 6355 00:42:25 24 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:42:25 24 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:42:25 24 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:42:25 24 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:42:25 24 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170123144224 ] 00:42:25 24 Jan 2017 UTC: INFO: Base.py(1333): PID:6362 00:42:25 24 Jan 2017 UTC: INFO: Base.py(1375): Started processing 00:42:25 24 Jan 2017 UTC 00:42:25 24 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:42:25 24 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:42:25 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:42:25 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:42:25 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:36 00:42:25 24 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:36 2245.0170 -15800.0230 01/24/17 00:40:02 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 00:42:25 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:36 00:42:25 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:36 2245.0170 -15800.0230 01/24/17 00:40:02 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 00:42:25 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:42:25 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:36 00:42:25 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:36 2245.0170 -15800.0230 01/24/17 00:40:02 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 00:42:25 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:42:25 24 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:42:25 24 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:42:25 24 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:42:25 24 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:42:25 24 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:42:25 24 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:42:25 24 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:42:25 24 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 00:42:25 24 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 00:42:25 24 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 00:42:25 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.36 00:42:25 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.36 00:42:25 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.36 00:42:25 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:42:25 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:42:25 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:42:25 24 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:42:25 24 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:42:25 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:42:25 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:42:25 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:42:25 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:42:25 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:42:25 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:42:25 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:42:25 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:42:25 24 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:42:25 24 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:42:25 24 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:42:25 24 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:42:25 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:42:25 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:42:25 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:42:25 24 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 00:42:25 24 Jan 2017 UTC 00:52:02 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 6992 00:52:02 24 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 00:52:50 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 7109 00:52:50 24 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:52:50 24 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:52:50 24 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:52:50 24 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:52:50 24 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170123145250 ] 00:52:50 24 Jan 2017 UTC: INFO: Base.py(1333): PID:7116 00:52:50 24 Jan 2017 UTC: INFO: Base.py(1375): Started processing 00:52:50 24 Jan 2017 UTC 00:52:50 24 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:52:50 24 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:52:50 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:52:50 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:52:50 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:2 call_cycle:37 00:52:50 24 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:2 call_cycle:37 2245.0240 -15800.0200 01/24/17 00:48:50 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 00:52:51 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:2 call_cycle:37 00:52:51 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:2 call_cycle:37 2245.0240 -15800.0200 01/24/17 00:48:50 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 00:52:51 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:52:51 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:2 call_cycle:37 00:52:51 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:2 call_cycle:37 2245.0240 -15800.0200 01/24/17 00:48:50 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 00:52:51 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:52:51 24 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:52:51 24 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:52:51 24 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:52:51 24 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:52:51 24 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:52:51 24 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:52:51 24 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:52:51 24 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 00:52:51 24 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 00:52:51 24 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 00:52:51 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.37 00:52:51 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.37 00:52:51 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.37 00:52:51 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:52:51 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:52:51 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:52:51 24 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:52:51 24 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:52:51 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:52:51 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:52:51 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:52:51 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:52:51 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:52:51 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:52:51 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:52:51 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:52:51 24 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:52:51 24 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:52:51 24 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:52:51 24 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:52:51 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:52:51 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:52:51 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:52:51 24 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 00:52:51 24 Jan 2017 UTC 01:24:44 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 8216 01:24:44 24 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 01:25:33 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 8303 01:25:33 24 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:25:33 24 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:25:33 24 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:25:33 24 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:25:33 24 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170123152533 ] 01:25:33 24 Jan 2017 UTC: INFO: Base.py(1333): PID:8311 01:25:34 24 Jan 2017 UTC: INFO: Base.py(1375): Started processing 01:25:34 24 Jan 2017 UTC 01:25:34 24 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:25:34 24 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:25:34 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:25:34 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:25:34 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:38 01:25:34 24 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:38 2244.9120 -15800.1020 01/24/17 01:23:20 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 01:25:34 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:38 01:25:34 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:38 2244.9120 -15800.1020 01/24/17 01:23:20 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 01:25:34 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:25:34 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:38 01:25:34 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:38 2244.9120 -15800.1020 01/24/17 01:23:20 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 01:25:34 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:25:34 24 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:25:34 24 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:25:34 24 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:25:34 24 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:25:34 24 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:25:34 24 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:25:34 24 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:25:34 24 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 01:25:34 24 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 01:25:34 24 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 01:25:34 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.38 01:25:34 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.38 01:25:34 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.38 01:25:34 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:25:34 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:25:34 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:25:34 24 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:25:34 24 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:25:34 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:25:34 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:25:34 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:25:34 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:25:34 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:25:34 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:25:34 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:25:34 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:25:34 24 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:25:34 24 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:25:34 24 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:25:34 24 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:25:34 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:25:34 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:25:34 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:25:34 24 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 01:25:34 24 Jan 2017 UTC 01:57:14 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 9772 01:57:14 24 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 01:58:02 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 9851 01:58:02 24 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:58:02 24 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:58:02 24 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:58:02 24 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:58:02 24 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170123155802 ] 01:58:02 24 Jan 2017 UTC: INFO: Base.py(1333): PID:9859 01:58:02 24 Jan 2017 UTC: INFO: Base.py(1375): Started processing 01:58:02 24 Jan 2017 UTC 01:58:02 24 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:58:02 24 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:58:02 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:58:02 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:58:02 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:39 01:58:02 24 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:39 2244.8580 -15759.6330 01/24/17 01:55:56 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 01:58:02 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:39 01:58:02 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:39 2244.8580 -15759.6330 01/24/17 01:55:56 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 01:58:02 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:58:02 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:39 01:58:02 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:39 2244.8580 -15759.6330 01/24/17 01:55:56 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 01:58:02 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:58:02 24 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:58:03 24 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:58:03 24 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:58:03 24 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:58:03 24 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:58:03 24 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:58:03 24 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:58:03 24 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 01:58:03 24 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 01:58:03 24 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 01:58:03 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.39 01:58:03 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.39 01:58:03 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.39 01:58:03 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:58:03 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:58:03 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:58:03 24 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:58:03 24 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:58:03 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:58:03 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:58:03 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:58:03 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:58:03 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:58:03 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:58:03 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:58:03 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:58:03 24 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:58:03 24 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:58:03 24 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:58:03 24 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:58:03 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:58:03 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:58:03 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:58:03 24 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 01:58:03 24 Jan 2017 UTC 02:32:07 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 11158 02:32:07 24 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 02:33:00 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 11247 02:33:00 24 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:33:00 24 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:33:00 24 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:33:00 24 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:33:00 24 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170123163259 ] 02:33:00 24 Jan 2017 UTC: INFO: Base.py(1333): PID:11254 02:33:00 24 Jan 2017 UTC: INFO: Base.py(1375): Started processing 02:33:00 24 Jan 2017 UTC 02:33:00 24 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:33:00 24 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:33:00 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:33:00 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:33:00 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:2 call_cycle:40 02:33:00 24 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:2 call_cycle:40 2244.8640 -15759.6350 01/24/17 02:28:41 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 02:33:00 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:2 call_cycle:40 02:33:00 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:2 call_cycle:40 2244.8640 -15759.6350 01/24/17 02:28:41 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 02:33:00 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:33:00 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:2 call_cycle:40 02:33:00 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:2 call_cycle:40 2244.8640 -15759.6350 01/24/17 02:28:41 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 02:33:00 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:33:00 24 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:33:01 24 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:33:01 24 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:33:01 24 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:33:01 24 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:33:01 24 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:33:01 24 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:33:01 24 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 02:33:01 24 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 02:33:01 24 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 02:33:01 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.40 02:33:01 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.40 02:33:01 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.40 02:33:01 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:33:01 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:33:01 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:33:01 24 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:33:01 24 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:33:01 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:33:01 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:33:01 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:33:01 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:33:01 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:33:01 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:33:01 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:33:01 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:33:01 24 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:33:01 24 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:33:01 24 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:33:01 24 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:33:01 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:33:01 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:33:01 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:33:01 24 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 02:33:01 24 Jan 2017 UTC 03:05:09 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 12384 03:05:09 24 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 03:05:58 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 12484 03:05:58 24 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:05:58 24 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:05:58 24 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:05:58 24 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:05:58 24 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170123170557 ] 03:05:58 24 Jan 2017 UTC: INFO: Base.py(1333): PID:12492 03:05:58 24 Jan 2017 UTC: INFO: Base.py(1375): Started processing 03:05:58 24 Jan 2017 UTC 03:05:58 24 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:05:58 24 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:05:58 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:05:58 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:05:58 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:41 03:05:58 24 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:41 2244.8540 -15759.6380 01/24/17 03:03:49 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 03:05:58 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:41 03:05:58 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:41 2244.8540 -15759.6380 01/24/17 03:03:49 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 03:05:58 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:05:58 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:41 03:05:58 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:41 2244.8540 -15759.6380 01/24/17 03:03:49 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 03:05:58 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:05:58 24 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:05:59 24 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:05:59 24 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:05:59 24 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:05:59 24 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:05:59 24 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:05:59 24 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:05:59 24 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 03:05:59 24 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 03:05:59 24 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 03:05:59 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.41 03:05:59 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.41 03:05:59 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.41 03:05:59 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:05:59 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:05:59 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:05:59 24 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:05:59 24 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:05:59 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:05:59 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:05:59 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:05:59 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:05:59 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:05:59 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:05:59 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:05:59 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:05:59 24 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:05:59 24 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:05:59 24 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:05:59 24 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:05:59 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:05:59 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:05:59 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:05:59 24 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 03:05:59 24 Jan 2017 UTC 03:13:40 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 12878 03:13:40 24 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 03:13:44 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 12953 03:13:44 24 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:13:44 24 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:13:44 24 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:13:44 24 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:13:44 24 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170123171343 ] 03:13:44 24 Jan 2017 UTC: INFO: Base.py(1333): PID:12961 03:13:44 24 Jan 2017 UTC: INFO: Base.py(1375): Started processing 03:13:44 24 Jan 2017 UTC 03:13:44 24 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:13:44 24 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:13:44 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:13:44 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:13:44 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 03:13:44 24 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (No GPS fix available for this call) to sdrifter@soest.hawaii.edu 03:13:44 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 03:13:44 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:13:44 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 03:13:44 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:13:44 24 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:13:45 24 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:13:45 24 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:13:45 24 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:13:45 24 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:13:45 24 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:13:45 24 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:13:45 24 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0000lz 03:13:45 24 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0000lz.x00 03:13:45 24 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0000lz.r in process_file_group 03:13:45 24 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260000.log 03:13:45 24 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:13:45 24 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0000kz 03:13:45 24 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0000kz.x00 03:13:45 24 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0000kz.r in process_file_group 03:13:45 24 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:13:45 24 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0000kl 03:13:45 24 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0000kl.x 03:13:45 24 Jan 2017 UTC: WARNING: Base.py(727): Final fragment ./sg0000kl.x size (7670) is too big, expected less than or equal to 4096. 03:13:45 24 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0000kl.r in process_file_group 03:13:45 24 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [0] 03:13:45 24 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [0] 03:13:45 24 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 03:13:45 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.41 03:13:45 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.41 03:13:45 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.41 03:13:45 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:13:45 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:13:45 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:13:45 24 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:13:45 24 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:13:45 24 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:13:45 24 Jan 2017 UTC /home/sg626/p6260000.log /home/sg626/p6260000.cap 03:13:45 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:13:45 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:13:45 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:13:45 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:13:45 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:13:45 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:13:45 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:13:45 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:13:45 24 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:13:45 24 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:13:45 24 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:13:45 24 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:13:45 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:13:45 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:13:45 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:13:45 24 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 03:13:45 24 Jan 2017 UTC 06:08:08 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 17490 06:08:08 24 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 06:08:57 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 17578 06:08:57 24 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:08:57 24 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 06:08:57 24 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 06:08:57 24 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:08:57 24 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170123200857 ] 06:08:57 24 Jan 2017 UTC: INFO: Base.py(1333): PID:17585 06:08:57 24 Jan 2017 UTC: INFO: Base.py(1375): Started processing 06:08:57 24 Jan 2017 UTC 06:08:57 24 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 06:08:58 24 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 06:08:58 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:08:58 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:08:58 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:42 06:08:58 24 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:42 2243.7060 -15754.9400 01/24/17 06:06:50 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 06:08:58 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:42 06:08:58 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:42 2243.7060 -15754.9400 01/24/17 06:06:50 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 06:08:58 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:08:58 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:42 06:08:58 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:42 2243.7060 -15754.9400 01/24/17 06:06:50 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 06:08:58 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:08:58 24 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:08:58 24 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:08:58 24 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:08:58 24 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 06:08:58 24 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:08:58 24 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:08:58 24 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 06:08:58 24 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 06:08:58 24 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 06:08:58 24 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 06:08:58 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.42 06:08:58 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.42 06:08:58 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.42 06:08:58 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:08:58 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:08:58 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:08:58 24 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:08:58 24 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:08:58 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:08:58 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:08:58 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:08:58 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:08:58 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:08:58 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:08:58 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:08:58 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:08:58 24 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 06:08:58 24 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 06:08:58 24 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 06:08:58 24 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 06:08:58 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:08:58 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:08:58 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:08:58 24 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 06:08:58 24 Jan 2017 UTC 09:11:10 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 22312 09:11:10 24 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 09:11:59 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 22398 09:11:59 24 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:11:59 24 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:11:59 24 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:11:59 24 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:11:59 24 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170123231159 ] 09:11:59 24 Jan 2017 UTC: INFO: Base.py(1333): PID:22405 09:11:59 24 Jan 2017 UTC: INFO: Base.py(1375): Started processing 09:11:59 24 Jan 2017 UTC 09:11:59 24 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:11:59 24 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:11:59 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:11:59 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:11:59 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:43 09:11:59 24 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:43 2244.3430 -15755.0890 01/24/17 09:09:49 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 09:11:59 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:43 09:11:59 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:43 2244.3430 -15755.0890 01/24/17 09:09:49 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 09:11:59 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:11:59 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:43 09:11:59 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:43 2244.3430 -15755.0890 01/24/17 09:09:49 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 09:12:00 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:12:00 24 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:12:00 24 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:12:00 24 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:12:00 24 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:12:00 24 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:12:00 24 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:12:00 24 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:12:00 24 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 09:12:00 24 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 09:12:00 24 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 09:12:00 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.43 09:12:00 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.43 09:12:00 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.43 09:12:00 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:12:00 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:12:00 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:12:00 24 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:12:00 24 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:12:00 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:12:00 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:12:00 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:12:00 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:12:00 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:12:00 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:12:00 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:12:00 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:12:00 24 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:12:00 24 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:12:00 24 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:12:00 24 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:12:00 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:12:00 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:12:00 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:12:00 24 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 09:12:00 24 Jan 2017 UTC 12:15:28 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 27065 12:15:29 24 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 12:16:20 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 27136 12:16:20 24 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:16:20 24 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:16:20 24 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:16:20 24 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:16:20 24 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170124021620 ] 12:16:20 24 Jan 2017 UTC: INFO: Base.py(1333): PID:27143 12:16:20 24 Jan 2017 UTC: INFO: Base.py(1375): Started processing 12:16:20 24 Jan 2017 UTC 12:16:20 24 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:16:20 24 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:16:20 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:16:20 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:16:20 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:2 call_cycle:44 12:16:20 24 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:2 call_cycle:44 2244.7190 -15759.6900 01/24/17 12:12:26 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 12:16:20 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:2 call_cycle:44 12:16:20 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:2 call_cycle:44 2244.7190 -15759.6900 01/24/17 12:12:26 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 12:16:20 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:16:20 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:2 call_cycle:44 12:16:20 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:2 call_cycle:44 2244.7190 -15759.6900 01/24/17 12:12:26 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 12:16:21 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:16:21 24 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:16:21 24 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:16:21 24 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:16:21 24 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:16:21 24 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:16:21 24 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:16:21 24 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:16:21 24 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 12:16:21 24 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 12:16:21 24 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 12:16:21 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.44 12:16:21 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.44 12:16:21 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.44 12:16:21 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:16:21 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:16:21 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:16:21 24 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:16:21 24 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:16:21 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:16:21 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:16:21 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:16:21 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:16:21 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:16:21 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:16:21 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:16:21 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:16:21 24 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 12:16:21 24 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 12:16:21 24 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 12:16:21 24 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 12:16:21 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:16:21 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:16:21 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:16:21 24 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 12:16:21 24 Jan 2017 UTC 15:18:45 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 31929 15:18:45 24 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 15:19:40 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 32006 15:19:40 24 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 15:19:40 24 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 15:19:40 24 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 15:19:40 24 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 15:19:40 24 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170124051939 ] 15:19:40 24 Jan 2017 UTC: INFO: Base.py(1333): PID:32013 15:19:40 24 Jan 2017 UTC: INFO: Base.py(1375): Started processing 15:19:40 24 Jan 2017 UTC 15:19:40 24 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 15:19:40 24 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 15:19:40 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 15:19:40 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:19:40 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:45 15:19:40 24 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:45 2245.4940 -15759.7120 01/24/17 15:17:01 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 15:19:40 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:45 15:19:40 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:45 2245.4940 -15759.7120 01/24/17 15:17:01 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 15:19:40 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:19:40 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:45 15:19:40 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:45 2245.4940 -15759.7120 01/24/17 15:17:01 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 15:19:40 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:19:40 24 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 15:19:41 24 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 15:19:41 24 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 15:19:41 24 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 15:19:41 24 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 15:19:41 24 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 15:19:41 24 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 15:19:41 24 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 15:19:41 24 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 15:19:41 24 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 15:19:41 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.45 15:19:41 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.45 15:19:41 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.45 15:19:41 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 15:19:41 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 15:19:41 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 15:19:41 24 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 15:19:41 24 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 15:19:41 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 15:19:41 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:19:41 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:19:41 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:19:41 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 15:19:41 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:19:41 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:19:41 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:19:41 24 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 15:19:41 24 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 15:19:41 24 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 15:19:41 24 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 15:19:41 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 15:19:41 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 15:19:41 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 15:19:41 24 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 15:19:41 24 Jan 2017 UTC 18:21:58 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 4610 18:21:58 24 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 18:22:52 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 4697 18:22:52 24 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:22:52 24 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 18:22:52 24 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 18:22:52 24 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:22:52 24 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170124082251 ] 18:22:52 24 Jan 2017 UTC: INFO: Base.py(1333): PID:4704 18:22:52 24 Jan 2017 UTC: INFO: Base.py(1375): Started processing 18:22:52 24 Jan 2017 UTC 18:22:52 24 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 18:22:52 24 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 18:22:52 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:22:52 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:22:52 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:46 18:22:52 24 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:46 2247.2040 -15803.1870 01/24/17 18:20:31 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 18:22:52 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:46 18:22:52 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:46 2247.2040 -15803.1870 01/24/17 18:20:31 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 18:22:52 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:22:52 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:46 18:22:52 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:46 2247.2040 -15803.1870 01/24/17 18:20:31 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 18:22:52 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:22:52 24 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:22:53 24 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:22:53 24 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:22:53 24 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 18:22:53 24 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:22:53 24 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:22:53 24 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 18:22:53 24 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 18:22:53 24 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 18:22:53 24 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 18:22:53 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.46 18:22:53 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.46 18:22:53 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.46 18:22:53 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:22:53 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:22:53 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:22:53 24 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:22:53 24 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:22:53 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:22:53 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:22:53 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:22:53 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:22:53 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:22:53 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:22:53 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:22:53 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:22:53 24 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 18:22:53 24 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 18:22:53 24 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 18:22:53 24 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 18:22:53 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:22:53 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:22:53 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:22:53 24 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 18:22:53 24 Jan 2017 UTC 21:24:59 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 9701 21:24:59 24 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 21:25:52 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 9806 21:25:52 24 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:25:52 24 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:25:52 24 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:25:52 24 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:25:52 24 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170124112551 ] 21:25:52 24 Jan 2017 UTC: INFO: Base.py(1333): PID:9813 21:25:52 24 Jan 2017 UTC: INFO: Base.py(1375): Started processing 21:25:52 24 Jan 2017 UTC 21:25:52 24 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:25:52 24 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:25:52 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:25:52 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:25:52 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:47 21:25:52 24 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:47 2247.4250 -15803.0360 01/24/17 21:23:20 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:25:52 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:47 21:25:52 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:47 2247.4250 -15803.0360 01/24/17 21:23:20 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:25:52 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:25:52 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:47 21:25:52 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:47 2247.4250 -15803.0360 01/24/17 21:23:20 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 21:25:52 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:25:52 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:47 21:25:52 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:47 2247.4250 -15803.0360 01/24/17 21:23:20 UTC QUIT_COMMAND) to hramm@hawaii.edu 21:25:52 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:25:52 24 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:25:53 24 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:25:53 24 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:25:53 24 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:25:53 24 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:25:53 24 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:25:53 24 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:25:53 24 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 21:25:53 24 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 21:25:53 24 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 21:25:53 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.47 21:25:53 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.47 21:25:53 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.47 21:25:53 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:25:53 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:25:53 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:25:53 24 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:25:53 24 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:25:53 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:25:53 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:25:53 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:25:53 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:25:53 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:25:53 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:25:53 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:25:53 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:25:53 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:25:53 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:25:53 24 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:25:53 24 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:25:53 24 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:25:53 24 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:25:53 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:25:53 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:25:53 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:25:53 24 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 21:25:53 24 Jan 2017 UTC 21:41:30 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 10564 21:41:30 24 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 21:42:19 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 10650 21:42:19 24 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:42:19 24 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:42:19 24 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:42:19 24 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:42:19 24 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170124114219 ] 21:42:19 24 Jan 2017 UTC: INFO: Base.py(1333): PID:10658 21:42:19 24 Jan 2017 UTC: INFO: Base.py(1375): Started processing 21:42:19 24 Jan 2017 UTC 21:42:19 24 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:42:19 24 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:42:19 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:42:19 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:42:19 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:3 call_cycle:48 21:42:19 24 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:3 call_cycle:48 2247.4390 -15803.0410 01/24/17 21:36:20 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:42:19 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:3 call_cycle:48 21:42:19 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:3 call_cycle:48 2247.4390 -15803.0410 01/24/17 21:36:20 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:42:20 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:42:20 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:3 call_cycle:48 21:42:20 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:3 call_cycle:48 2247.4390 -15803.0410 01/24/17 21:36:20 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 21:42:20 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:42:20 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:3 call_cycle:48 21:42:20 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:3 call_cycle:48 2247.4390 -15803.0410 01/24/17 21:36:20 UTC QUIT_COMMAND) to hramm@hawaii.edu 21:42:20 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:42:20 24 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:42:20 24 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:42:20 24 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:42:20 24 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:42:20 24 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:42:20 24 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:42:20 24 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:42:20 24 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 21:42:20 24 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 21:42:20 24 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 21:42:20 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.48 21:42:20 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.48 21:42:20 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.48 21:42:20 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:42:20 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:42:20 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:42:20 24 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:42:20 24 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:42:20 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:42:20 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:42:20 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:42:20 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:42:20 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:42:20 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:42:20 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:42:20 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:42:20 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:42:20 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:42:20 24 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:42:20 24 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:42:20 24 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:42:20 24 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:42:20 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:42:20 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:42:20 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:42:20 24 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 21:42:20 24 Jan 2017 UTC 21:54:06 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 11196 21:54:06 24 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 21:54:56 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 11284 21:54:56 24 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:54:56 24 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:54:56 24 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:54:56 24 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:54:56 24 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170124115455 ] 21:54:56 24 Jan 2017 UTC: INFO: Base.py(1333): PID:11292 21:54:56 24 Jan 2017 UTC: INFO: Base.py(1375): Started processing 21:54:56 24 Jan 2017 UTC 21:54:56 24 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:54:56 24 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:54:56 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:54:56 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:54:56 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:49 21:54:56 24 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:49 2247.4390 -15803.0430 01/24/17 21:52:44 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:55:01 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:49 21:55:01 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:49 2247.4390 -15803.0430 01/24/17 21:52:44 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:55:01 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:55:01 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:49 21:55:01 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:49 2247.4390 -15803.0430 01/24/17 21:52:44 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 21:55:01 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:55:01 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:49 21:55:01 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:49 2247.4390 -15803.0430 01/24/17 21:52:44 UTC QUIT_COMMAND) to hramm@hawaii.edu 21:55:01 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:55:01 24 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:55:02 24 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:55:02 24 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:55:02 24 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:55:02 24 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:55:02 24 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:55:02 24 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:55:02 24 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 21:55:02 24 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 21:55:02 24 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 21:55:02 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.49 21:55:02 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.49 21:55:02 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.49 21:55:02 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:55:02 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:55:02 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:55:02 24 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:55:02 24 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:55:02 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:55:02 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:55:02 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:55:02 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:55:02 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:55:02 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:55:02 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:55:02 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:55:02 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:55:02 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:55:02 24 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:55:02 24 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:55:02 24 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:55:02 24 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:55:02 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:55:02 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:55:02 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:55:02 24 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 21:55:02 24 Jan 2017 UTC 22:32:43 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 12554 22:32:43 24 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 22:33:32 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 12633 22:33:32 24 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:33:32 24 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:33:32 24 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:33:32 24 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:33:32 24 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170124123332 ] 22:33:32 24 Jan 2017 UTC: INFO: Base.py(1333): PID:12641 22:33:32 24 Jan 2017 UTC: INFO: Base.py(1375): Started processing 22:33:32 24 Jan 2017 UTC 22:33:32 24 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:33:33 24 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:33:33 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:33:33 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:33:33 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:52 22:33:33 24 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:52 2247.4630 -15803.0460 01/24/17 22:31:04 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:33:33 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:52 22:33:33 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:52 2247.4630 -15803.0460 01/24/17 22:31:04 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:33:33 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:33:33 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:52 22:33:33 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:52 2247.4630 -15803.0460 01/24/17 22:31:04 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 22:33:33 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:33:33 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:52 22:33:33 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:52 2247.4630 -15803.0460 01/24/17 22:31:04 UTC QUIT_COMMAND) to hramm@hawaii.edu 22:33:33 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:33:33 24 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:33:33 24 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:33:33 24 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:33:33 24 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:33:33 24 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:33:33 24 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:33:33 24 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:33:33 24 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 22:33:33 24 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 22:33:33 24 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 22:33:33 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.52 22:33:33 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.52 22:33:33 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.52 22:33:33 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:33:33 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:33:33 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:33:33 24 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:33:33 24 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:33:33 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:33:33 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:33:33 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:33:33 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:33:33 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:33:33 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:33:33 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:33:33 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:33:33 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:33:33 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:33:33 24 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:33:33 24 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:33:33 24 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:33:33 24 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:33:33 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:33:33 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:33:33 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:33:33 24 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 22:33:33 24 Jan 2017 UTC 22:51:03 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 13247 22:51:03 24 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 22:51:54 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 13334 22:51:54 24 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:51:54 24 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:51:54 24 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:51:54 24 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:51:54 24 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170124125154 ] 22:51:54 24 Jan 2017 UTC: INFO: Base.py(1333): PID:13341 22:51:54 24 Jan 2017 UTC: INFO: Base.py(1375): Started processing 22:51:54 24 Jan 2017 UTC 22:51:54 24 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:51:54 24 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:51:54 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:51:54 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:51:54 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:53 22:51:54 24 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:53 2247.4430 -15803.0500 01/24/17 22:49:20 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:51:55 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:53 22:51:55 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:53 2247.4430 -15803.0500 01/24/17 22:49:20 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:51:55 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:51:55 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:53 22:51:55 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:53 2247.4430 -15803.0500 01/24/17 22:49:20 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 22:51:55 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:51:55 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:53 22:51:55 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:53 2247.4430 -15803.0500 01/24/17 22:49:20 UTC QUIT_COMMAND) to hramm@hawaii.edu 22:51:55 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:51:55 24 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:51:55 24 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:51:55 24 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:51:55 24 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:51:55 24 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:51:55 24 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:51:55 24 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:51:55 24 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 22:51:55 24 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 22:51:55 24 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 22:51:55 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.53 22:51:55 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.53 22:51:55 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.53 22:51:55 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:51:55 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:51:55 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:51:55 24 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:51:55 24 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:51:55 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:51:55 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:51:55 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:51:55 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:51:55 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:51:55 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:51:55 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:51:55 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:51:55 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:51:55 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:51:55 24 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:51:55 24 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:51:55 24 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:51:55 24 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:51:55 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:51:55 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:51:55 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:51:55 24 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 22:51:55 24 Jan 2017 UTC 23:53:46 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 15169 23:53:46 24 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 23:54:38 24 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 15246 23:54:38 24 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:54:38 24 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:54:38 24 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:54:38 24 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:54:38 24 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170124135438 ] 23:54:38 24 Jan 2017 UTC: INFO: Base.py(1333): PID:15254 23:54:38 24 Jan 2017 UTC: INFO: Base.py(1375): Started processing 23:54:38 24 Jan 2017 UTC 23:54:38 24 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:54:38 24 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:54:38 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:54:38 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:54:38 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:54 23:54:38 24 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:54 2247.4300 -15803.0470 01/24/17 23:52:11 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 23:54:39 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:54 23:54:39 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:54 2247.4300 -15803.0470 01/24/17 23:52:11 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 23:54:39 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:54:39 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:54 23:54:39 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:54 2247.4300 -15803.0470 01/24/17 23:52:11 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 23:54:39 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:54:39 24 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:54 23:54:39 24 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:54 2247.4300 -15803.0470 01/24/17 23:52:11 UTC QUIT_COMMAND) to hramm@hawaii.edu 23:54:39 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:54:39 24 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:54:39 24 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:54:39 24 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:54:39 24 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:54:39 24 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:54:39 24 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:54:39 24 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:54:39 24 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 23:54:39 24 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 23:54:39 24 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 23:54:39 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.54 23:54:39 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.54 23:54:39 24 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.54 23:54:39 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:54:39 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:54:39 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:54:39 24 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:54:39 24 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:54:39 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:54:39 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:54:39 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:54:39 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:54:39 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:54:39 24 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:54:39 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:54:39 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:54:39 24 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:54:39 24 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:54:39 24 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:54:39 24 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:54:39 24 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:54:39 24 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:54:39 24 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:54:39 24 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:54:39 24 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:54:39 24 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 23:54:39 24 Jan 2017 UTC 00:58:37 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 17173 00:58:37 25 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 00:59:30 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 17242 00:59:30 25 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:59:30 25 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:59:30 25 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:59:30 25 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:59:30 25 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170124145929 ] 00:59:30 25 Jan 2017 UTC: INFO: Base.py(1333): PID:17249 00:59:30 25 Jan 2017 UTC: INFO: Base.py(1375): Started processing 00:59:30 25 Jan 2017 UTC 00:59:30 25 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:59:30 25 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:59:30 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:59:30 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:59:30 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:2 call_cycle:55 00:59:30 25 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:2 call_cycle:55 2247.4430 -15803.0500 01/25/17 00:55:06 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 00:59:35 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:2 call_cycle:55 00:59:35 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:2 call_cycle:55 2247.4430 -15803.0500 01/25/17 00:55:06 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 00:59:35 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:59:35 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:2 call_cycle:55 00:59:35 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:2 call_cycle:55 2247.4430 -15803.0500 01/25/17 00:55:06 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 00:59:35 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:59:35 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:2 call_cycle:55 00:59:35 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:2 call_cycle:55 2247.4430 -15803.0500 01/25/17 00:55:06 UTC QUIT_COMMAND) to hramm@hawaii.edu 00:59:35 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:59:35 25 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:59:36 25 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:59:36 25 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:59:36 25 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:59:36 25 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:59:36 25 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:59:36 25 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:59:36 25 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 00:59:36 25 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 00:59:36 25 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 00:59:36 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.55 00:59:36 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.55 00:59:36 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.55 00:59:36 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:59:36 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:59:36 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:59:36 25 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:59:36 25 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:59:36 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:59:36 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:59:36 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:59:36 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:59:36 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:59:36 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:59:36 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:59:36 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:59:36 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:59:36 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:59:36 25 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:59:36 25 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:59:36 25 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:59:36 25 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:59:36 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:59:36 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:59:36 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:59:36 25 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 00:59:36 25 Jan 2017 UTC 04:01:40 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 22371 04:01:40 25 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 04:02:27 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 22457 04:02:27 25 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:02:27 25 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:02:27 25 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:02:27 25 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:02:27 25 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170124180227 ] 04:02:27 25 Jan 2017 UTC: INFO: Base.py(1333): PID:22465 04:02:27 25 Jan 2017 UTC: INFO: Base.py(1375): Started processing 04:02:27 25 Jan 2017 UTC 04:02:27 25 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:02:28 25 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:02:28 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:02:28 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:02:28 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:56 04:02:28 25 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:56 2242.8070 -15804.7640 01/25/17 04:00:19 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 04:02:28 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:56 04:02:28 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:56 2242.8070 -15804.7640 01/25/17 04:00:19 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 04:02:28 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:02:28 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:56 04:02:28 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:56 2242.8070 -15804.7640 01/25/17 04:00:19 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 04:02:28 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:02:28 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:56 04:02:28 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:56 2242.8070 -15804.7640 01/25/17 04:00:19 UTC QUIT_COMMAND) to hramm@hawaii.edu 04:02:28 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:02:28 25 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:02:28 25 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:02:28 25 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:02:28 25 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:02:28 25 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:02:28 25 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:02:28 25 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:02:28 25 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 04:02:28 25 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 04:02:28 25 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 04:02:28 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.56 04:02:28 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.56 04:02:28 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.56 04:02:28 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:02:28 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:02:28 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:02:28 25 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:02:28 25 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:02:28 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:02:28 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:02:28 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:02:28 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:02:28 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:02:28 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:02:28 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:02:28 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:02:28 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:02:28 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:02:28 25 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:02:28 25 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:02:28 25 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:02:28 25 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:02:28 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:02:28 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:02:28 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:02:28 25 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 04:02:28 25 Jan 2017 UTC 07:04:34 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 26961 07:04:34 25 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 07:05:24 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 27048 07:05:24 25 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:05:24 25 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:05:24 25 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:05:24 25 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:05:24 25 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170124210523 ] 07:05:24 25 Jan 2017 UTC: INFO: Base.py(1333): PID:27055 07:05:24 25 Jan 2017 UTC: INFO: Base.py(1375): Started processing 07:05:24 25 Jan 2017 UTC 07:05:24 25 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:05:24 25 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:05:24 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:05:24 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:05:24 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:57 07:05:24 25 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:57 2243.1440 -15804.1620 01/25/17 07:03:02 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 07:05:24 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:57 07:05:24 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:57 2243.1440 -15804.1620 01/25/17 07:03:02 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 07:05:24 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:05:24 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:57 07:05:24 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:57 2243.1440 -15804.1620 01/25/17 07:03:02 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 07:05:24 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:05:24 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:57 07:05:24 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:57 2243.1440 -15804.1620 01/25/17 07:03:02 UTC QUIT_COMMAND) to hramm@hawaii.edu 07:05:24 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:05:24 25 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:05:25 25 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:05:25 25 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:05:25 25 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:05:25 25 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:05:25 25 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:05:25 25 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:05:25 25 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 07:05:25 25 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 07:05:25 25 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 07:05:25 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.57 07:05:25 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.57 07:05:25 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.57 07:05:25 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:05:25 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:05:25 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:05:25 25 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:05:25 25 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:05:25 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:05:25 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:05:25 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:05:25 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:05:25 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:05:25 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:05:25 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:05:25 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:05:25 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:05:25 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:05:25 25 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:05:25 25 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:05:25 25 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:05:25 25 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:05:25 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:05:25 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:05:25 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:05:25 25 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 07:05:25 25 Jan 2017 UTC 10:09:07 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 32157 10:09:07 25 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 10:09:55 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 32236 10:09:55 25 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:09:55 25 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:09:55 25 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:09:55 25 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:09:55 25 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125000955 ] 10:09:55 25 Jan 2017 UTC: INFO: Base.py(1333): PID:32243 10:09:55 25 Jan 2017 UTC: INFO: Base.py(1375): Started processing 10:09:55 25 Jan 2017 UTC 10:09:55 25 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:09:55 25 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:09:55 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:09:55 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:09:55 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:2 call_cycle:58 10:09:55 25 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:2 call_cycle:58 2244.9960 -15800.0210 01/25/17 10:06:02 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 10:09:56 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:2 call_cycle:58 10:09:56 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:2 call_cycle:58 2244.9960 -15800.0210 01/25/17 10:06:02 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 10:09:56 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:09:56 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:2 call_cycle:58 10:09:56 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:2 call_cycle:58 2244.9960 -15800.0210 01/25/17 10:06:02 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 10:09:56 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:09:56 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:2 call_cycle:58 10:09:56 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:2 call_cycle:58 2244.9960 -15800.0210 01/25/17 10:06:02 UTC QUIT_COMMAND) to hramm@hawaii.edu 10:09:56 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:09:56 25 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:09:56 25 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:09:56 25 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:09:56 25 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:09:56 25 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:09:56 25 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:09:56 25 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:09:56 25 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 10:09:56 25 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 10:09:56 25 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 10:09:56 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.58 10:09:56 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.58 10:09:56 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.58 10:09:56 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:09:56 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:09:56 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:09:56 25 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:09:56 25 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:09:56 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:09:56 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:09:56 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:09:56 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:09:56 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:09:56 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:09:56 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:09:56 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:09:56 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:09:56 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:09:56 25 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:09:56 25 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:09:56 25 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:09:56 25 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:09:56 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:09:56 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:09:56 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:09:56 25 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 10:09:56 25 Jan 2017 UTC 13:11:47 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 4754 13:11:47 25 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 13:12:34 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 4775 13:12:34 25 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:12:34 25 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:12:34 25 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:12:34 25 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:12:34 25 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125031233 ] 13:12:34 25 Jan 2017 UTC: INFO: Base.py(1333): PID:4783 13:12:34 25 Jan 2017 UTC: INFO: Base.py(1375): Started processing 13:12:34 25 Jan 2017 UTC 13:12:34 25 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:12:34 25 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:12:34 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:12:34 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:12:34 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:59 13:12:34 25 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:59 2245.0140 -15800.0250 01/25/17 13:10:26 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 13:12:34 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:59 13:12:34 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:59 2245.0140 -15800.0250 01/25/17 13:10:26 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 13:12:34 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:12:34 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:59 13:12:34 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:59 2245.0140 -15800.0250 01/25/17 13:10:26 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 13:12:34 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:12:34 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:59 13:12:34 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:59 2245.0140 -15800.0250 01/25/17 13:10:26 UTC QUIT_COMMAND) to hramm@hawaii.edu 13:12:34 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:12:34 25 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:12:35 25 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:12:35 25 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:12:35 25 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:12:35 25 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:12:35 25 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:12:35 25 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:12:35 25 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 13:12:35 25 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 13:12:35 25 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 13:12:35 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.59 13:12:35 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.59 13:12:35 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.59 13:12:35 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:12:35 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:12:35 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:12:35 25 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:12:35 25 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:12:35 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:12:35 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:12:35 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:12:35 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:12:35 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:12:35 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:12:35 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:12:35 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:12:35 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:12:35 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:12:35 25 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:12:35 25 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:12:35 25 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:12:35 25 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:12:35 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:12:35 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:12:35 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:12:35 25 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 13:12:35 25 Jan 2017 UTC 16:14:39 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 9522 16:14:39 25 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 16:15:27 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 9609 16:15:27 25 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:15:27 25 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:15:27 25 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:15:27 25 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:15:27 25 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125061527 ] 16:15:27 25 Jan 2017 UTC: INFO: Base.py(1333): PID:9617 16:15:27 25 Jan 2017 UTC: INFO: Base.py(1375): Started processing 16:15:27 25 Jan 2017 UTC 16:15:27 25 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:15:28 25 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:15:28 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:15:28 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:15:28 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:60 16:15:28 25 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:60 2247.7920 -15756.8240 01/25/17 16:13:19 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 16:15:28 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:60 16:15:28 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:60 2247.7920 -15756.8240 01/25/17 16:13:19 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 16:15:28 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:15:28 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:60 16:15:28 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:60 2247.7920 -15756.8240 01/25/17 16:13:19 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 16:15:28 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:15:28 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:60 16:15:28 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:60 2247.7920 -15756.8240 01/25/17 16:13:19 UTC QUIT_COMMAND) to hramm@hawaii.edu 16:15:28 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:15:28 25 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:15:28 25 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:15:28 25 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:15:28 25 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:15:28 25 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:15:28 25 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:15:28 25 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:15:28 25 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 16:15:28 25 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 16:15:28 25 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 16:15:28 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.60 16:15:28 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.60 16:15:28 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.60 16:15:28 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:15:28 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:15:28 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:15:28 25 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:15:28 25 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:15:28 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:15:28 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:15:28 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:15:28 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:15:28 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:15:28 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:15:28 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:15:28 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:15:28 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:15:28 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:15:28 25 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:15:28 25 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:15:28 25 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:15:28 25 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:15:28 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:15:28 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:15:28 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:15:28 25 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 16:15:28 25 Jan 2017 UTC 19:17:50 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 14698 19:17:51 25 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 19:18:46 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 14788 19:18:46 25 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:18:46 25 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:18:46 25 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:18:46 25 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:18:46 25 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125091845 ] 19:18:46 25 Jan 2017 UTC: INFO: Base.py(1333): PID:14795 19:18:46 25 Jan 2017 UTC: INFO: Base.py(1375): Started processing 19:18:46 25 Jan 2017 UTC 19:18:46 25 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:18:46 25 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:18:46 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:18:46 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:18:46 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:61 19:18:46 25 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:61 2240.9290 -15808.2250 01/25/17 19:15:50 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 19:18:46 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:61 19:18:46 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:61 2240.9290 -15808.2250 01/25/17 19:15:50 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 19:18:46 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:18:46 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:61 19:18:46 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:61 2240.9290 -15808.2250 01/25/17 19:15:50 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 19:18:46 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:18:46 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:61 19:18:46 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:61 2240.9290 -15808.2250 01/25/17 19:15:50 UTC QUIT_COMMAND) to hramm@hawaii.edu 19:18:46 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:18:46 25 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:18:47 25 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:18:47 25 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:18:47 25 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:18:47 25 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:18:47 25 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:18:47 25 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:18:47 25 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 19:18:47 25 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 19:18:47 25 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 19:18:47 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.61 19:18:47 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.61 19:18:47 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.61 19:18:47 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:18:47 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:18:47 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:18:47 25 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:18:47 25 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:18:47 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:18:47 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:18:47 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:18:47 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:18:47 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:18:47 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:18:47 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:18:47 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:18:47 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:18:47 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:18:47 25 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:18:47 25 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:18:47 25 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:18:47 25 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:18:47 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:18:47 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:18:47 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:18:47 25 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 19:18:47 25 Jan 2017 UTC 19:31:06 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 16010 19:31:06 25 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 19:31:53 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 16102 19:31:53 25 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:31:53 25 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:31:53 25 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:31:53 25 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:31:53 25 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125093153 ] 19:31:53 25 Jan 2017 UTC: INFO: Base.py(1333): PID:16110 19:31:54 25 Jan 2017 UTC: INFO: Base.py(1375): Started processing 19:31:54 25 Jan 2017 UTC 19:31:54 25 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:31:54 25 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:31:54 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:31:54 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:31:54 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:62 19:31:54 25 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:62 2239.6260 -15810.7830 01/25/17 19:29:30 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 19:31:54 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:62 19:31:54 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:62 2239.6260 -15810.7830 01/25/17 19:29:30 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 19:31:54 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:31:54 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:62 19:31:54 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:62 2239.6260 -15810.7830 01/25/17 19:29:30 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 19:31:54 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:31:54 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:62 19:31:54 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:62 2239.6260 -15810.7830 01/25/17 19:29:30 UTC QUIT_COMMAND) to hramm@hawaii.edu 19:31:54 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:31:54 25 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:31:55 25 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:31:55 25 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:31:55 25 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:31:55 25 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:31:55 25 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:31:55 25 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:31:55 25 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 19:31:55 25 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 19:31:55 25 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 19:31:55 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.62 19:31:55 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.62 19:31:55 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.62 19:31:55 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:31:55 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:31:55 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:31:55 25 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:31:55 25 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:31:55 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:31:55 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:31:55 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:31:55 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:31:55 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:31:55 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:31:55 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:31:55 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:31:55 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:31:55 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:31:55 25 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:31:55 25 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:31:55 25 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:31:55 25 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:31:55 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:31:55 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:31:55 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:31:55 25 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 19:31:55 25 Jan 2017 UTC 19:44:31 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 16877 19:44:31 25 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 19:45:20 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 16964 19:45:20 25 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:45:20 25 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:45:20 25 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:45:20 25 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:45:20 25 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125094519 ] 19:45:20 25 Jan 2017 UTC: INFO: Base.py(1333): PID:16972 19:45:20 25 Jan 2017 UTC: INFO: Base.py(1375): Started processing 19:45:20 25 Jan 2017 UTC 19:45:20 25 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:45:20 25 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:45:20 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:45:20 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:45:20 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:63 19:45:20 25 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:63 2238.3910 -15813.1900 01/25/17 19:42:29 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 19:45:20 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:63 19:45:20 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:63 2238.3910 -15813.1900 01/25/17 19:42:29 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 19:45:20 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:45:20 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:63 19:45:20 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:63 2238.3910 -15813.1900 01/25/17 19:42:29 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 19:45:20 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:45:20 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:63 19:45:20 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:63 2238.3910 -15813.1900 01/25/17 19:42:29 UTC QUIT_COMMAND) to hramm@hawaii.edu 19:45:20 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:45:20 25 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:45:21 25 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:45:21 25 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:45:21 25 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:45:21 25 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:45:21 25 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:45:21 25 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:45:21 25 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 19:45:21 25 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 19:45:21 25 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 19:45:21 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.63 19:45:21 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.63 19:45:21 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.63 19:45:21 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:45:21 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:45:21 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:45:21 25 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:45:21 25 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:45:21 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:45:21 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:45:21 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:45:21 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:45:21 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:45:21 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:45:21 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:45:21 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:45:21 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:45:21 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:45:21 25 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:45:21 25 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:45:21 25 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:45:21 25 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:45:21 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:45:21 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:45:21 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:45:21 25 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 19:45:21 25 Jan 2017 UTC 20:07:20 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 18005 20:07:20 25 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 20:08:09 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 18084 20:08:09 25 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:08:09 25 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:08:09 25 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:08:09 25 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:08:09 25 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125100808 ] 20:08:09 25 Jan 2017 UTC: INFO: Base.py(1333): PID:18092 20:08:09 25 Jan 2017 UTC: INFO: Base.py(1375): Started processing 20:08:09 25 Jan 2017 UTC 20:08:09 25 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:08:09 25 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:08:09 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:08:09 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:08:09 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:64 20:08:09 25 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:64 2236.6690 -15816.7870 01/25/17 20:05:55 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 20:08:09 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:64 20:08:09 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:64 2236.6690 -15816.7870 01/25/17 20:05:55 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 20:08:09 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:08:09 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:64 20:08:09 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:64 2236.6690 -15816.7870 01/25/17 20:05:55 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 20:08:09 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:08:09 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:64 20:08:09 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:64 2236.6690 -15816.7870 01/25/17 20:05:55 UTC QUIT_COMMAND) to hramm@hawaii.edu 20:08:09 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:08:09 25 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:08:10 25 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:08:10 25 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:08:10 25 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:08:10 25 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:08:10 25 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:08:10 25 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:08:10 25 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 20:08:10 25 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 20:08:10 25 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 20:08:10 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.64 20:08:10 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.64 20:08:10 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.64 20:08:10 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:08:10 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:08:10 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:08:10 25 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:08:10 25 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:08:10 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:08:10 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:08:10 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:08:10 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:08:10 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:08:10 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:08:10 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:08:10 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:08:10 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:08:10 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:08:10 25 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:08:10 25 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:08:10 25 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:08:10 25 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:08:10 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:08:10 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:08:10 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:08:10 25 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 20:08:10 25 Jan 2017 UTC 20:30:21 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 19354 20:30:21 25 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 20:31:17 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 19460 20:31:17 25 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:31:17 25 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:31:17 25 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:31:17 25 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:31:17 25 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125103116 ] 20:31:17 25 Jan 2017 UTC: INFO: Base.py(1333): PID:19468 20:31:17 25 Jan 2017 UTC: INFO: Base.py(1375): Started processing 20:31:17 25 Jan 2017 UTC 20:31:17 25 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:31:17 25 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:31:17 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:31:17 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:31:17 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:65 20:31:17 25 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:65 2236.7330 -15816.5620 01/25/17 20:28:56 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 20:31:17 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:65 20:31:17 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:65 2236.7330 -15816.5620 01/25/17 20:28:56 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 20:31:17 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:31:17 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:65 20:31:17 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:65 2236.7330 -15816.5620 01/25/17 20:28:56 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 20:31:17 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:31:17 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:65 20:31:17 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:65 2236.7330 -15816.5620 01/25/17 20:28:56 UTC QUIT_COMMAND) to hramm@hawaii.edu 20:31:17 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:31:17 25 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:31:18 25 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:31:18 25 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:31:18 25 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:31:18 25 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:31:18 25 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:31:18 25 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:31:18 25 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 20:31:18 25 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 20:31:18 25 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 20:31:18 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.65 20:31:18 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.65 20:31:18 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.65 20:31:18 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:31:18 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:31:18 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:31:18 25 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:31:18 25 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:31:18 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:31:18 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:31:18 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:31:18 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:31:18 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:31:18 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:31:18 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:31:18 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:31:18 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:31:18 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:31:18 25 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:31:18 25 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:31:18 25 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:31:18 25 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:31:18 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:31:18 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:31:18 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:31:18 25 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 20:31:18 25 Jan 2017 UTC 20:52:51 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 20603 20:52:51 25 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 20:53:55 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 20717 20:53:55 25 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:53:55 25 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:53:55 25 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:53:55 25 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:53:55 25 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125105355 ] 20:53:55 25 Jan 2017 UTC: INFO: Base.py(1333): PID:20725 20:53:55 25 Jan 2017 UTC: INFO: Base.py(1375): Started processing 20:53:55 25 Jan 2017 UTC 20:53:56 25 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:53:56 25 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:53:56 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:53:56 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:53:56 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:66 20:53:56 25 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:66 2237.0850 -15815.3870 01/25/17 20:51:31 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 20:53:56 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:66 20:53:56 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:66 2237.0850 -15815.3870 01/25/17 20:51:31 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 20:53:56 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:53:56 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:66 20:53:56 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:66 2237.0850 -15815.3870 01/25/17 20:51:31 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 20:53:56 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:53:56 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:66 20:53:56 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:66 2237.0850 -15815.3870 01/25/17 20:51:31 UTC QUIT_COMMAND) to hramm@hawaii.edu 20:53:56 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:53:56 25 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:53:57 25 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:53:57 25 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:53:57 25 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:53:57 25 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:53:57 25 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:53:57 25 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:53:57 25 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 20:53:57 25 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 20:53:57 25 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 20:53:57 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.66 20:53:57 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.66 20:53:57 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.66 20:53:57 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:53:57 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:53:57 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:53:57 25 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:53:57 25 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:53:57 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:53:57 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:53:57 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:53:57 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:53:57 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:53:57 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:53:57 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:53:57 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:53:57 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:53:57 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:53:57 25 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:53:57 25 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:53:57 25 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:53:57 25 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:53:57 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:53:57 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:53:57 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:53:57 25 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 20:53:57 25 Jan 2017 UTC 21:15:43 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 22002 21:15:43 25 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 21:16:32 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 22105 21:16:32 25 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:16:32 25 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:16:32 25 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:16:32 25 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:16:32 25 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125111632 ] 21:16:32 25 Jan 2017 UTC: INFO: Base.py(1333): PID:22113 21:16:32 25 Jan 2017 UTC: INFO: Base.py(1375): Started processing 21:16:32 25 Jan 2017 UTC 21:16:33 25 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:16:33 25 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:16:33 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:16:33 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:16:33 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:67 21:16:33 25 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:67 2238.2510 -15811.3360 01/25/17 21:14:09 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:16:33 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:67 21:16:33 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:67 2238.2510 -15811.3360 01/25/17 21:14:09 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:16:33 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:16:33 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:67 21:16:33 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:67 2238.2510 -15811.3360 01/25/17 21:14:09 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 21:16:33 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:16:33 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:67 21:16:33 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:67 2238.2510 -15811.3360 01/25/17 21:14:09 UTC QUIT_COMMAND) to hramm@hawaii.edu 21:16:33 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:16:33 25 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:16:34 25 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:16:34 25 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:16:34 25 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:16:34 25 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:16:34 25 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:16:34 25 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:16:34 25 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 21:16:34 25 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 21:16:34 25 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 21:16:34 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.67 21:16:34 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.67 21:16:34 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.67 21:16:34 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:16:34 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:16:34 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:16:34 25 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:16:34 25 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:16:34 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:16:34 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:16:34 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:16:34 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:16:34 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:16:34 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:16:34 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:16:34 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:16:34 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:16:34 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:16:34 25 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:16:34 25 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:16:34 25 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:16:34 25 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:16:34 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:16:34 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:16:34 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:16:34 25 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 21:16:34 25 Jan 2017 UTC 21:30:07 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 22928 21:30:07 25 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 21:30:58 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 23032 21:30:58 25 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:30:58 25 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:30:58 25 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:30:58 25 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:30:58 25 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125113058 ] 21:30:58 25 Jan 2017 UTC: INFO: Base.py(1333): PID:23040 21:30:59 25 Jan 2017 UTC: INFO: Base.py(1375): Started processing 21:30:59 25 Jan 2017 UTC 21:30:59 25 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:30:59 25 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:30:59 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:30:59 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:30:59 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:68 21:30:59 25 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:68 2239.0090 -15808.7240 01/25/17 21:28:46 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:30:59 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:68 21:30:59 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:68 2239.0090 -15808.7240 01/25/17 21:28:46 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:30:59 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:30:59 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:68 21:30:59 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:68 2239.0090 -15808.7240 01/25/17 21:28:46 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 21:30:59 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:30:59 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:68 21:30:59 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:68 2239.0090 -15808.7240 01/25/17 21:28:46 UTC QUIT_COMMAND) to hramm@hawaii.edu 21:30:59 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:30:59 25 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:31:00 25 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:31:00 25 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:31:00 25 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:31:00 25 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:31:00 25 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:31:00 25 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:31:00 25 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 21:31:00 25 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 21:31:00 25 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 21:31:00 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.68 21:31:00 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.68 21:31:00 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.68 21:31:00 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:31:00 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:31:00 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:31:00 25 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:31:00 25 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:31:00 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:31:00 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:31:00 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:31:00 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:31:00 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:31:00 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:31:00 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:31:00 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:31:00 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:31:00 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:31:00 25 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:31:00 25 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:31:00 25 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:31:00 25 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:31:00 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:31:00 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:31:00 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:31:00 25 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 21:31:00 25 Jan 2017 UTC 21:44:33 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 23759 21:44:33 25 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 21:45:21 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 23861 21:45:21 25 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:45:21 25 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:45:21 25 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:45:21 25 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:45:21 25 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125114521 ] 21:45:21 25 Jan 2017 UTC: INFO: Base.py(1333): PID:23869 21:45:21 25 Jan 2017 UTC: INFO: Base.py(1375): Started processing 21:45:21 25 Jan 2017 UTC 21:45:21 25 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:45:21 25 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:45:21 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:45:21 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:45:21 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:69 21:45:21 25 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:69 2239.8020 -15806.1460 01/25/17 21:43:12 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:45:22 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:69 21:45:22 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:69 2239.8020 -15806.1460 01/25/17 21:43:12 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:45:22 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:45:22 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:69 21:45:22 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:69 2239.8020 -15806.1460 01/25/17 21:43:12 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 21:45:22 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:45:22 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:69 21:45:22 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:69 2239.8020 -15806.1460 01/25/17 21:43:12 UTC QUIT_COMMAND) to hramm@hawaii.edu 21:45:22 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:45:22 25 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:45:22 25 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:45:22 25 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:45:22 25 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:45:22 25 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:45:22 25 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:45:22 25 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:45:22 25 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 21:45:22 25 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 21:45:22 25 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 21:45:22 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.69 21:45:22 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.69 21:45:22 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.69 21:45:22 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:45:22 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:45:22 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:45:22 25 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:45:22 25 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:45:22 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:45:22 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:45:22 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:45:22 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:45:22 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:45:22 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:45:22 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:45:22 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:45:22 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:45:22 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:45:22 25 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:45:22 25 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:45:22 25 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:45:22 25 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:45:22 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:45:22 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:45:22 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:45:22 25 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 21:45:22 25 Jan 2017 UTC 21:58:56 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 24560 21:58:56 25 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 21:59:51 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 24665 21:59:51 25 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:59:51 25 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:59:51 25 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:59:51 25 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:59:51 25 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125115950 ] 21:59:51 25 Jan 2017 UTC: INFO: Base.py(1333): PID:24672 21:59:51 25 Jan 2017 UTC: INFO: Base.py(1375): Started processing 21:59:51 25 Jan 2017 UTC 21:59:51 25 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:59:51 25 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:59:51 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:59:51 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:59:51 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:70 21:59:51 25 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:70 2240.5930 -15803.6010 01/25/17 21:57:35 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:59:51 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:70 21:59:51 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:70 2240.5930 -15803.6010 01/25/17 21:57:35 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:59:51 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:59:51 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:70 21:59:51 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:70 2240.5930 -15803.6010 01/25/17 21:57:35 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 21:59:51 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:59:51 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:70 21:59:51 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:70 2240.5930 -15803.6010 01/25/17 21:57:35 UTC QUIT_COMMAND) to hramm@hawaii.edu 21:59:51 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:59:51 25 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:59:52 25 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:59:52 25 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:59:52 25 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:59:52 25 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:59:52 25 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:59:52 25 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:59:52 25 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 21:59:52 25 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 21:59:52 25 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 21:59:52 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.70 21:59:52 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.70 21:59:52 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.70 21:59:52 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:59:52 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:59:52 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:59:52 25 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:59:52 25 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:59:52 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:59:52 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:59:52 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:59:52 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:59:52 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:59:52 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:59:52 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:59:52 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:59:52 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:59:52 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:59:52 25 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:59:52 25 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:59:52 25 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:59:52 25 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:59:52 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:59:52 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:59:52 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:59:52 25 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 21:59:52 25 Jan 2017 UTC 22:08:25 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 25368 22:08:25 25 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 22:09:13 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 25460 22:09:13 25 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:09:13 25 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:09:13 25 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:09:13 25 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:09:13 25 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125120912 ] 22:09:13 25 Jan 2017 UTC: INFO: Base.py(1333): PID:25468 22:09:13 25 Jan 2017 UTC: INFO: Base.py(1375): Started processing 22:09:13 25 Jan 2017 UTC 22:09:13 25 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:09:13 25 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:09:13 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:09:13 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:09:13 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:71 22:09:13 25 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:71 2241.0450 -15802.1060 01/25/17 22:07:05 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:09:13 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:71 22:09:13 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:71 2241.0450 -15802.1060 01/25/17 22:07:05 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:09:13 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:09:13 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:71 22:09:13 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:71 2241.0450 -15802.1060 01/25/17 22:07:05 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 22:09:13 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:09:13 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:71 22:09:13 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:71 2241.0450 -15802.1060 01/25/17 22:07:05 UTC QUIT_COMMAND) to hramm@hawaii.edu 22:09:13 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:09:13 25 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:09:14 25 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:09:14 25 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:09:14 25 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:09:14 25 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:09:14 25 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:09:14 25 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:09:14 25 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 22:09:14 25 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 22:09:14 25 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 22:09:14 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.71 22:09:14 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.71 22:09:14 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.71 22:09:14 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:09:14 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:09:14 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:09:14 25 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:09:14 25 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:09:14 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:09:14 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:09:14 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:09:14 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:09:14 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:09:14 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:09:14 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:09:14 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:09:14 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:09:14 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:09:14 25 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:09:14 25 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:09:14 25 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:09:14 25 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:09:14 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:09:14 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:09:14 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:09:14 25 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 22:09:14 25 Jan 2017 UTC 22:17:50 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 26008 22:17:50 25 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 22:18:42 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 26115 22:18:42 25 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:18:42 25 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:18:42 25 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:18:42 25 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:18:42 25 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125121841 ] 22:18:42 25 Jan 2017 UTC: INFO: Base.py(1333): PID:26125 22:18:42 25 Jan 2017 UTC: INFO: Base.py(1375): Started processing 22:18:42 25 Jan 2017 UTC 22:18:42 25 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:18:42 25 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:18:42 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:18:42 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:18:42 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:72 22:18:42 25 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:72 2241.0880 -15802.0320 01/25/17 22:16:31 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:18:42 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:72 22:18:42 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:72 2241.0880 -15802.0320 01/25/17 22:16:31 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:18:42 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:18:42 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:72 22:18:42 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:72 2241.0880 -15802.0320 01/25/17 22:16:31 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 22:18:42 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:18:42 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:72 22:18:42 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:72 2241.0880 -15802.0320 01/25/17 22:16:31 UTC QUIT_COMMAND) to hramm@hawaii.edu 22:18:42 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:18:42 25 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:18:43 25 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:18:43 25 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:18:43 25 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:18:43 25 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:18:43 25 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:18:43 25 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:18:43 25 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 22:18:43 25 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 22:18:43 25 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 22:18:43 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.72 22:18:43 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.72 22:18:43 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.72 22:18:43 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:18:43 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:18:43 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:18:43 25 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:18:43 25 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:18:43 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:18:43 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:18:43 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:18:43 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:18:43 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:18:43 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:18:43 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:18:43 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:18:43 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:18:43 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:18:43 25 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:18:43 25 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:18:43 25 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:18:43 25 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:18:43 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:18:43 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:18:43 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:18:43 25 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 22:18:43 25 Jan 2017 UTC 22:23:27 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 26624 22:23:27 25 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 22:24:15 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 26809 22:24:15 25 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:24:15 25 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:24:15 25 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:24:15 25 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:24:15 25 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125122415 ] 22:24:15 25 Jan 2017 UTC: INFO: Base.py(1333): PID:26817 22:24:15 25 Jan 2017 UTC: INFO: Base.py(1375): Started processing 22:24:15 25 Jan 2017 UTC 22:24:15 25 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:24:15 25 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:24:15 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:24:15 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:24:15 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:73 22:24:15 25 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:73 2241.0700 -15802.0200 01/25/17 22:21:55 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:24:15 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:73 22:24:15 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:73 2241.0700 -15802.0200 01/25/17 22:21:55 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:24:15 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:24:15 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:73 22:24:15 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:73 2241.0700 -15802.0200 01/25/17 22:21:55 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 22:24:16 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:24:16 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:73 22:24:16 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:73 2241.0700 -15802.0200 01/25/17 22:21:55 UTC QUIT_COMMAND) to hramm@hawaii.edu 22:24:16 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:24:16 25 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:24:16 25 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:24:16 25 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:24:16 25 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:24:16 25 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:24:16 25 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:24:16 25 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:24:16 25 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 22:24:16 25 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 22:24:16 25 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 22:24:16 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.73 22:24:16 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.73 22:24:16 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.73 22:24:16 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:24:16 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:24:16 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:24:16 25 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:24:16 25 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:24:16 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:24:16 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:24:16 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:24:16 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:24:16 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:24:16 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:24:16 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:24:16 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:24:16 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:24:16 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:24:16 25 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:24:16 25 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:24:16 25 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:24:16 25 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:24:16 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:24:16 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:24:16 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:24:16 25 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 22:24:16 25 Jan 2017 UTC 22:28:48 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 27149 22:28:49 25 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 22:29:39 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 27265 22:29:39 25 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:29:39 25 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:29:39 25 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:29:39 25 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:29:39 25 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125122939 ] 22:29:39 25 Jan 2017 UTC: INFO: Base.py(1333): PID:27273 22:29:39 25 Jan 2017 UTC: INFO: Base.py(1375): Started processing 22:29:39 25 Jan 2017 UTC 22:29:39 25 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:29:40 25 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:29:40 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:29:40 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:29:40 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:74 22:29:40 25 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:74 2241.0620 -15802.0320 01/25/17 22:27:30 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:29:40 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:74 22:29:40 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:74 2241.0620 -15802.0320 01/25/17 22:27:30 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:29:40 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:29:40 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:74 22:29:40 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:74 2241.0620 -15802.0320 01/25/17 22:27:30 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 22:29:40 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:29:40 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:74 22:29:40 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:74 2241.0620 -15802.0320 01/25/17 22:27:30 UTC QUIT_COMMAND) to hramm@hawaii.edu 22:29:40 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:29:40 25 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:29:40 25 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:29:40 25 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:29:40 25 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:29:40 25 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:29:40 25 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:29:40 25 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:29:40 25 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 22:29:40 25 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 22:29:40 25 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 22:29:40 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.74 22:29:40 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.74 22:29:40 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.74 22:29:40 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:29:40 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:29:40 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:29:40 25 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:29:40 25 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:29:40 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:29:40 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:29:40 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:29:40 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:29:40 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:29:40 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:29:40 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:29:40 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:29:40 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:29:40 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:29:40 25 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:29:40 25 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:29:40 25 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:29:40 25 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:29:40 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:29:40 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:29:40 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:29:40 25 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 22:29:40 25 Jan 2017 UTC 22:47:48 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 28247 22:47:48 25 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 22:48:04 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 28335 22:48:04 25 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:48:04 25 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:48:04 25 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:48:04 25 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:48:04 25 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125124803 ] 22:48:04 25 Jan 2017 UTC: INFO: Base.py(1333): PID:28349 22:48:04 25 Jan 2017 UTC: INFO: Base.py(1375): Started processing 22:48:04 25 Jan 2017 UTC 22:48:04 25 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:48:04 25 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:48:04 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:48:04 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:48:04 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:76 22:48:04 25 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:76 2241.0950 -15802.0570 01/25/17 22:45:50 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:48:04 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:76 22:48:04 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:76 2241.0950 -15802.0570 01/25/17 22:45:50 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:48:04 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:48:04 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:76 22:48:04 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:76 2241.0950 -15802.0570 01/25/17 22:45:50 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 22:48:04 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:48:04 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:76 22:48:04 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:76 2241.0950 -15802.0570 01/25/17 22:45:50 UTC QUIT_COMMAND) to hramm@hawaii.edu 22:48:04 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:48:04 25 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:48:05 25 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:48:05 25 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:48:05 25 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:48:05 25 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:48:05 25 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:48:05 25 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:48:05 25 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 22:48:05 25 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 22:48:05 25 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 22:48:05 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.76 22:48:05 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.76 22:48:05 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.76 22:48:05 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:48:05 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:48:05 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:48:05 25 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:48:05 25 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:48:05 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:48:05 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:48:05 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:48:05 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:48:05 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:48:05 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:48:05 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:48:05 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:48:05 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:48:05 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:48:05 25 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:48:05 25 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:48:05 25 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:48:05 25 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:48:05 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:48:05 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:48:05 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:48:05 25 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 22:48:05 25 Jan 2017 UTC 22:52:57 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 28984 22:52:57 25 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 22:53:47 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 29087 22:53:47 25 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:53:47 25 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:53:47 25 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:53:47 25 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:53:47 25 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125125347 ] 22:53:47 25 Jan 2017 UTC: INFO: Base.py(1333): PID:29094 22:53:47 25 Jan 2017 UTC: INFO: Base.py(1375): Started processing 22:53:47 25 Jan 2017 UTC 22:53:47 25 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:53:47 25 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:53:47 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:53:47 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:53:47 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:77 22:53:47 25 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:77 2241.0850 -15802.0810 01/25/17 22:51:32 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:53:47 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:77 22:53:47 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:77 2241.0850 -15802.0810 01/25/17 22:51:32 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:53:47 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:53:47 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:77 22:53:47 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:77 2241.0850 -15802.0810 01/25/17 22:51:32 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 22:53:48 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:53:48 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:77 22:53:48 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:77 2241.0850 -15802.0810 01/25/17 22:51:32 UTC QUIT_COMMAND) to hramm@hawaii.edu 22:53:48 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:53:48 25 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:53:48 25 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:53:48 25 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:53:48 25 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:53:48 25 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:53:48 25 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:53:48 25 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:53:48 25 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 22:53:48 25 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 22:53:48 25 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 22:53:48 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.77 22:53:48 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.77 22:53:48 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.77 22:53:48 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:53:48 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:53:48 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:53:48 25 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:53:48 25 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:53:48 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:53:48 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:53:48 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:53:48 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:53:48 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:53:48 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:53:48 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:53:48 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:53:48 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:53:48 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:53:48 25 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:53:48 25 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:53:48 25 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:53:48 25 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:53:48 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:53:48 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:53:48 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:53:48 25 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 22:53:48 25 Jan 2017 UTC 22:58:25 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 29432 22:58:25 25 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 22:59:14 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 29527 22:59:14 25 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:59:14 25 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:59:14 25 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:59:14 25 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:59:14 25 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125125914 ] 22:59:14 25 Jan 2017 UTC: INFO: Base.py(1333): PID:29535 22:59:14 25 Jan 2017 UTC: INFO: Base.py(1375): Started processing 22:59:14 25 Jan 2017 UTC 22:59:14 25 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:59:14 25 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:59:14 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:59:14 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:59:14 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:78 22:59:14 25 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:78 2241.0870 -15802.1270 01/25/17 22:57:08 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:59:15 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:78 22:59:15 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:78 2241.0870 -15802.1270 01/25/17 22:57:08 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:59:15 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:59:15 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:78 22:59:15 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:78 2241.0870 -15802.1270 01/25/17 22:57:08 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 22:59:15 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:59:15 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:78 22:59:15 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:78 2241.0870 -15802.1270 01/25/17 22:57:08 UTC QUIT_COMMAND) to hramm@hawaii.edu 22:59:15 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:59:15 25 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:59:15 25 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:59:15 25 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:59:15 25 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:59:15 25 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:59:15 25 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:59:15 25 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:59:15 25 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 22:59:15 25 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 22:59:15 25 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 22:59:15 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.78 22:59:15 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.78 22:59:15 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.78 22:59:15 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:59:15 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:59:15 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:59:15 25 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:59:15 25 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:59:15 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:59:15 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:59:15 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:59:15 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:59:15 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:59:15 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:59:15 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:59:15 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:59:15 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:59:15 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:59:15 25 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:59:15 25 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:59:15 25 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:59:15 25 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:59:15 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:59:15 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:59:15 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:59:15 25 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 22:59:15 25 Jan 2017 UTC 23:39:49 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 31904 23:39:49 25 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 23:46:15 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 32307 23:46:15 25 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:46:15 25 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:46:15 25 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:46:15 25 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:46:15 25 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125134615 ] 23:46:15 25 Jan 2017 UTC: INFO: Base.py(1333): PID:32315 23:46:15 25 Jan 2017 UTC: INFO: Base.py(1375): Started processing 23:46:15 25 Jan 2017 UTC 23:46:15 25 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:46:15 25 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:46:15 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:46:15 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:46:15 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:0 23:46:15 25 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:1 calls_made:1 call_cycle:0 2241.1790 -15802.3130 01/25/17 23:37:47 UTC) to sdrifter@soest.hawaii.edu 23:46:16 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:0 23:46:16 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 23:46:16 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:0 23:46:16 25 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:1 calls_made:1 call_cycle:0 2241.1790 -15802.3130 01/25/17 23:37:47 UTC) to seaglider@km.soest.hawaii.edu 23:46:16 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:0 23:46:16 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:46:16 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:0 23:46:16 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:46:16 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:0 23:46:16 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:46:16 25 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:46:16 25 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:46:16 25 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:46:16 25 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:46:16 25 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:46:16 25 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:46:16 25 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:46:16 25 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0001lz 23:46:16 25 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0001lz.x00 23:46:16 25 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0001lz.r in process_file_group 23:46:16 25 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260001.log 23:46:16 25 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:46:16 25 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0001kz 23:46:16 25 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0001kz.x00 23:46:16 25 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0001kz.x01 23:46:16 25 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0001kz.x02 23:46:16 25 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0001kz.x03 23:46:16 25 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0001kz.x04 23:46:16 25 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0001kz.x05 23:46:16 25 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0001kz.x06 23:46:16 25 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0001kz.x07 23:46:16 25 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0001kz.x08 23:46:16 25 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0001kz.x09 23:46:16 25 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0001kz.x0a 23:46:16 25 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0001kz.x0b 23:46:16 25 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0001kz.x0k 23:46:16 25 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0001kz.x0d 23:46:16 25 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0001kz.r in process_file_group 23:46:16 25 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:46:16 25 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0001dz 23:46:16 25 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0001dz.x00 23:46:16 25 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0001dz.x01 23:46:16 25 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0001dz.x02 23:46:16 25 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0001dz.r in process_file_group 23:46:17 25 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [1] 23:46:17 25 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [1] 23:46:17 25 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260001) for profiles 23:46:17 25 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 23:46:17 25 Jan 2017 UTC: INFO: QC.py(365): Changed (35/288) 2:4 84 85 87 88 90:96 100:104 110 132 133 136 140 ... to QC_PROBABLY_BAD because raw temperature spikes 23:46:17 25 Jan 2017 UTC: INFO: QC.py(377): Changed (4/288) 285:288 to QC_BAD because raw salinity below bound 23:46:17 25 Jan 2017 UTC: INFO: QC.py(388): Changed (2/288) 285 288 to QC_BAD because bad raw salinity indicates raw conductivity issues 23:46:17 25 Jan 2017 UTC: INFO: QC.py(408): Changed (7/288) 4 5 7 59:62 to QC_PROBABLY_BAD because raw conductivity spikes 23:46:17 25 Jan 2017 UTC: INFO: QC.py(180): Changed (33/288) 2:4 84 85 87 88 90:96 100:104 110 132 133 136 140 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 23:46:17 25 Jan 2017 UTC: INFO: QC.py(180): Changed (6/288) 5 7 59:62 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 23:46:17 25 Jan 2017 UTC: INFO: QC.py(365): Changed (35/288) 2:4 84 85 87 88 90:96 100:104 110 132 133 136 140 ... to QC_INTERPOLATED because temperature spikes 23:46:17 25 Jan 2017 UTC: INFO: QC.py(377): Changed (4/288) 285:288 to QC_BAD because salinity below bound 23:46:17 25 Jan 2017 UTC: INFO: QC.py(388): Changed (4/288) 285:288 to QC_BAD because bad salinity indicates conductivity issues 23:46:17 25 Jan 2017 UTC: INFO: QC.py(408): Changed (7/288) 4 5 7 59:62 to QC_INTERPOLATED because conductivity spikes 23:46:17 25 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (82/288) 22:103 to QC_BAD because slow apogee CT flow 23:46:17 25 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/288) 1:10 to QC_BAD because prior to dive start 23:46:17 25 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (14/288) 271:284 to QC_BAD because end of climb 23:46:17 25 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (110/288) 1:10 22:103 271:288 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 23:46:17 25 Jan 2017 UTC: INFO: QC.py(180): Changed (110/288) 1:10 22:103 271:288 to QC_BAD because changed corrected salin implies changed speed 23:46:17 25 Jan 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 108 stalled points 104:120 122:143 145 146 148:150 152 153 156 157 159 160 162 165 167 170 172 175:179 181 182 184 187 190 192:195 197:200 203 205 206 208 211 214 216 217 219 221:223 225 226 233 234 236 238 239 242 244 245 247 248 250 252 253 255 257 258 260 263 265 266 269 23:46:17 25 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 23:46:17 25 Jan 2017 UTC: INFO: QC.py(180): Changed (15/288) 104 110 132 133 136 140 143 144 150 152 153 156 ... to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 23:46:17 25 Jan 2017 UTC: INFO: QC.py(180): Changed (15/288) 104 110 132 133 136 140 143 144 150 152 153 156 ... to QC_INTERPOLATED because changed corrected temp implies changed speed 23:46:17 25 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 3.93 cm/s 23:46:17 25 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 7.19 cm/s 23:46:17 25 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 23:46:17 25 Jan 2017 UTC: INFO: QC.py(180): Changed (35/288) 2:4 84 85 87 88 90:96 100:104 110 132 133 136 140 ... to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 23:46:17 25 Jan 2017 UTC: INFO: sbe43_ext.py(293): Changed (161/288) 104:150 152:157 159 160 162:184 186:239 241:266 ... to QC_BAD because slow flow in SBE43 23:46:17 25 Jan 2017 UTC: INFO: QC.py(180): Changed (35/288) 2:4 84 85 87 88 90:96 100:104 110 132 133 136 140 ... to QC_INTERPOLATED because changed temperature implies changed optode oxygen 23:46:17 25 Jan 2017 UTC: INFO: QC.py(180): Changed (110/288) 1:10 22:103 271:288 to QC_BAD because changed salinity implies changed optode oxygen 23:46:17 25 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 23:46:17 25 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 23:46:17 25 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 23:46:19 25 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 1: Data set size for profile, binned and kkyy files reduced by 110 points, a 38.19% reduction 23:46:19 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.1 23:46:19 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.1 23:46:19 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.1 23:46:19 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:46:19 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:46:19 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:46:19 25 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 23:46:19 25 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 23:46:19 25 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 21, max_depth_dive_num = 1 23:46:19 25 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 23:46:19 25 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 23:46:19 25 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:46:19 25 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:46:19 25 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:46:19 25 Jan 2017 UTC /home/sg626/p6260001.log /home/sg626/p6260001.eng /home/sg626/p6260001.cap /home/sg626/p6260001.asc /home/sg626/p6260001.pro /home/sg626/p6260001.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 23:46:19 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:46:19 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:46:19 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 23:46:19 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:46:19 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:46:19 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:46:19 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:46:19 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:46:19 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 23:46:19 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:46:19 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:46:19 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:46:19 25 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:46:19 25 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:46:19 25 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:46:19 25 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:46:19 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:46:19 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:46:19 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:46:19 25 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 23:46:19 25 Jan 2017 UTC 23:48:22 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 32590 23:48:22 25 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 23:49:13 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 32685 23:49:13 25 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:49:13 25 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:49:13 25 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:49:13 25 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:49:13 25 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125134912 ] 23:49:13 25 Jan 2017 UTC: INFO: Base.py(1333): PID:32693 23:49:13 25 Jan 2017 UTC: INFO: Base.py(1375): Started processing 23:49:13 25 Jan 2017 UTC 23:49:13 25 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:49:13 25 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:49:13 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:49:13 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:49:13 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:1 23:49:13 25 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:1 calls_made:1 call_cycle:1 2241.1500 -15802.3800 01/25/17 23:47:05 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 23:49:13 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:1 23:49:13 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:1 calls_made:1 call_cycle:1 2241.1500 -15802.3800 01/25/17 23:47:05 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 23:49:13 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 23:49:13 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:1 23:49:13 25 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:1 calls_made:1 call_cycle:1 2241.1500 -15802.3800 01/25/17 23:47:05 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 23:49:13 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:1 23:49:13 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:1 calls_made:1 call_cycle:1 2241.1500 -15802.3800 01/25/17 23:47:05 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 23:49:13 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:49:13 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:1 23:49:13 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:1 calls_made:1 call_cycle:1 2241.1500 -15802.3800 01/25/17 23:47:05 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 23:49:13 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:49:13 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:1 23:49:13 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:1 calls_made:1 call_cycle:1 2241.1500 -15802.3800 01/25/17 23:47:05 UTC QUIT_COMMAND) to hramm@hawaii.edu 23:49:13 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:49:13 25 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:49:14 25 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:49:14 25 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:49:14 25 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:49:14 25 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:49:14 25 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:49:14 25 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:49:14 25 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 23:49:14 25 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 23:49:14 25 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 23:49:14 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.1.1 23:49:14 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.1.1 23:49:14 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.1.1 23:49:14 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:49:14 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:49:14 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:49:14 25 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:49:14 25 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:49:14 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:49:14 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:49:14 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 23:49:14 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:49:14 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:49:14 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:49:14 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:49:14 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:49:14 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 23:49:14 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:49:14 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:49:14 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:49:14 25 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:49:14 25 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:49:14 25 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:49:14 25 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:49:14 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:49:14 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:49:14 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:49:14 25 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 23:49:14 25 Jan 2017 UTC 23:53:52 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 708 23:53:52 25 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 23:54:41 25 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 844 23:54:41 25 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:54:41 25 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:54:41 25 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:54:41 25 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:54:41 25 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125135441 ] 23:54:41 25 Jan 2017 UTC: INFO: Base.py(1333): PID:852 23:54:41 25 Jan 2017 UTC: INFO: Base.py(1375): Started processing 23:54:41 25 Jan 2017 UTC 23:54:41 25 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:54:42 25 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:54:42 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:54:42 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:54:42 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:2 23:54:42 25 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:1 calls_made:1 call_cycle:2 2241.1490 -15802.4280 01/25/17 23:52:34 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 23:54:42 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:2 23:54:42 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:1 calls_made:1 call_cycle:2 2241.1490 -15802.4280 01/25/17 23:52:34 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 23:54:42 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 23:54:42 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:2 23:54:42 25 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:1 calls_made:1 call_cycle:2 2241.1490 -15802.4280 01/25/17 23:52:34 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 23:54:42 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:2 23:54:42 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:1 calls_made:1 call_cycle:2 2241.1490 -15802.4280 01/25/17 23:52:34 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 23:54:42 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:54:42 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:2 23:54:42 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:1 calls_made:1 call_cycle:2 2241.1490 -15802.4280 01/25/17 23:52:34 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 23:54:42 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:54:42 25 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:2 23:54:42 25 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:1 calls_made:1 call_cycle:2 2241.1490 -15802.4280 01/25/17 23:52:34 UTC QUIT_COMMAND) to hramm@hawaii.edu 23:54:42 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:54:42 25 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:54:43 25 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:54:43 25 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:54:43 25 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:54:43 25 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:54:43 25 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:54:43 25 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:54:43 25 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 23:54:43 25 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 23:54:43 25 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 23:54:43 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.1.2 23:54:43 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.1.2 23:54:43 25 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.1.2 23:54:43 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:54:43 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:54:43 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:54:43 25 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:54:43 25 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:54:43 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:54:43 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:54:43 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 23:54:43 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:54:43 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:54:43 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:54:43 25 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:54:43 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:54:43 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 23:54:43 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:54:43 25 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:54:43 25 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:54:43 25 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:54:43 25 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:54:43 25 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:54:43 25 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:54:43 25 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:54:43 25 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:54:43 25 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:54:43 25 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 23:54:43 25 Jan 2017 UTC 00:28:59 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 3183 00:28:59 26 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 00:31:21 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 3492 00:31:21 26 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:31:21 26 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:31:21 26 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:31:21 26 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:31:21 26 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125143120 ] 00:31:21 26 Jan 2017 UTC: INFO: Base.py(1333): PID:3500 00:31:21 26 Jan 2017 UTC: INFO: Base.py(1375): Started processing 00:31:21 26 Jan 2017 UTC 00:31:21 26 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:31:21 26 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:31:21 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:31:21 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:31:21 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:0 00:31:21 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:2 calls_made:1 call_cycle:0 2241.1070 -15802.5910 01/26/17 00:27:26 UTC) to sdrifter@soest.hawaii.edu 00:31:21 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:0 00:31:21 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 00:31:21 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:0 00:31:21 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:2 calls_made:1 call_cycle:0 2241.1070 -15802.5910 01/26/17 00:27:26 UTC) to seaglider@km.soest.hawaii.edu 00:31:21 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:0 00:31:21 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:31:21 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:0 00:31:21 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:31:21 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:0 00:31:21 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:31:21 26 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:31:22 26 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:31:22 26 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:31:22 26 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:31:22 26 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:31:22 26 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:31:22 26 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:31:22 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0002lz 00:31:22 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0002lz.x00 00:31:22 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0002lz.r in process_file_group 00:31:22 26 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260002.log 00:31:22 26 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:31:22 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0002dz 00:31:22 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0002dz.x00 00:31:22 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0002dz.r in process_file_group 00:31:22 26 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:31:22 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0002kz 00:31:22 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0002kz.x00 00:31:22 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0002kz.x01 00:31:22 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0002kz.x02 00:31:22 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0002kz.r in process_file_group 00:31:22 26 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [2] 00:31:22 26 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [2] 00:31:22 26 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260002) for profiles 00:31:22 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 00:31:22 26 Jan 2017 UTC: INFO: QC.py(365): Changed (2/101) 2 99 to QC_PROBABLY_BAD because raw temperature spikes 00:31:22 26 Jan 2017 UTC: INFO: QC.py(408): Changed (1/101) 81 to QC_PROBABLY_BAD because raw conductivity spikes 00:31:22 26 Jan 2017 UTC: INFO: QC.py(180): Changed (2/101) 2 99 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:31:22 26 Jan 2017 UTC: INFO: QC.py(180): Changed (1/101) 81 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 00:31:22 26 Jan 2017 UTC: INFO: QC.py(365): Changed (2/101) 2 99 to QC_INTERPOLATED because temperature spikes 00:31:22 26 Jan 2017 UTC: INFO: QC.py(408): Changed (1/101) 81 to QC_INTERPOLATED because conductivity spikes 00:31:22 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (23/101) 25:47 to QC_BAD because slow apogee CT flow 00:31:22 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (8/101) 1:8 to QC_BAD because prior to dive start 00:31:22 26 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(3318): Engineering data ends at 99.23 meters; truncated dive? - continuing 00:31:22 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (31/101) 1:8 25:47 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:31:22 26 Jan 2017 UTC: INFO: QC.py(180): Changed (31/101) 1:8 25:47 to QC_BAD because changed corrected salin implies changed speed 00:31:22 26 Jan 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 53 stalled points 48:99 101 00:31:22 26 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 3 iterations 00:31:22 26 Jan 2017 UTC: INFO: QC.py(180): Changed (1/101) 99 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 00:31:22 26 Jan 2017 UTC: INFO: QC.py(180): Changed (1/101) 81 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 00:31:22 26 Jan 2017 UTC: INFO: QC.py(180): Changed (1/101) 99 to QC_INTERPOLATED because changed corrected temp implies changed speed 00:31:22 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 11.60 cm/s 00:31:22 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 6.20 cm/s 00:31:22 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:31:22 26 Jan 2017 UTC: INFO: QC.py(180): Changed (2/101) 2 99 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:31:22 26 Jan 2017 UTC: INFO: sbe43_ext.py(293): Changed (54/101) 48:101 to QC_BAD because slow flow in SBE43 00:31:22 26 Jan 2017 UTC: INFO: QC.py(180): Changed (2/101) 2 99 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:31:22 26 Jan 2017 UTC: INFO: QC.py(180): Changed (31/101) 1:8 25:47 to QC_BAD because changed salinity implies changed optode oxygen 00:31:22 26 Jan 2017 UTC: INFO: QC.py(180): Changed (1/101) 81 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 00:31:22 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:31:22 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3746): Skipping DAC computation. 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:31:22 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 00:31:23 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 2: Data set size for profile, binned and kkyy files reduced by 31 points, a 30.69% reduction 00:31:23 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.2 00:31:23 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.2 00:31:23 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.2 00:31:23 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:31:23 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:31:23 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:31:23 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 00:31:23 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 00:31:23 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 21, max_depth_dive_num = 1 00:31:23 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 00:31:23 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 00:31:23 26 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:31:23 26 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:31:23 26 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:31:23 26 Jan 2017 UTC /home/sg626/p6260002.log /home/sg626/p6260002.eng /home/sg626/p6260002.asc /home/sg626/p6260002.cap /home/sg626/p6260002.pro /home/sg626/p6260002.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 00:31:23 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:31:23 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:31:23 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 00:31:23 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:31:23 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:31:23 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:31:23 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:31:23 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:31:23 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 00:31:23 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:31:23 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:31:23 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:31:23 26 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:31:23 26 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:31:23 26 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:31:23 26 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:31:23 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:31:23 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:31:23 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:31:23 26 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 00:31:23 26 Jan 2017 UTC 00:33:15 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 3782 00:33:15 26 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 00:34:02 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 3887 00:34:02 26 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:34:02 26 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:34:02 26 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:34:02 26 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:34:02 26 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125143402 ] 00:34:02 26 Jan 2017 UTC: INFO: Base.py(1333): PID:3895 00:34:02 26 Jan 2017 UTC: INFO: Base.py(1375): Started processing 00:34:02 26 Jan 2017 UTC 00:34:02 26 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:34:02 26 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:34:02 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:34:02 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:34:02 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:1 00:34:02 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:2 calls_made:1 call_cycle:1 2241.1180 -15802.6410 01/26/17 00:31:56 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 00:34:03 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:1 00:34:03 26 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:2 calls_made:1 call_cycle:1 2241.1180 -15802.6410 01/26/17 00:31:56 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 00:34:03 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 00:34:03 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:1 00:34:03 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:2 calls_made:1 call_cycle:1 2241.1180 -15802.6410 01/26/17 00:31:56 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 00:34:03 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:1 00:34:03 26 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:2 calls_made:1 call_cycle:1 2241.1180 -15802.6410 01/26/17 00:31:56 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 00:34:03 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:34:03 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:1 00:34:03 26 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:2 calls_made:1 call_cycle:1 2241.1180 -15802.6410 01/26/17 00:31:56 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 00:34:03 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:34:03 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:1 00:34:03 26 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:2 calls_made:1 call_cycle:1 2241.1180 -15802.6410 01/26/17 00:31:56 UTC QUIT_COMMAND) to hramm@hawaii.edu 00:34:03 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:34:03 26 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:34:04 26 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:34:04 26 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:34:04 26 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:34:04 26 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:34:04 26 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:34:04 26 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:34:04 26 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 00:34:04 26 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 00:34:04 26 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 00:34:04 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.2.1 00:34:04 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.2.1 00:34:04 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.2.1 00:34:04 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:34:04 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:34:04 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:34:04 26 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:34:04 26 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:34:04 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:34:04 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:34:04 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 00:34:04 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:34:04 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:34:04 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:34:04 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:34:04 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:34:04 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 00:34:04 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:34:04 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:34:04 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:34:04 26 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:34:04 26 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:34:04 26 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:34:04 26 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:34:04 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:34:04 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:34:04 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:34:04 26 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 00:34:04 26 Jan 2017 UTC 00:38:47 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 4456 00:38:47 26 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 00:39:41 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 4563 00:39:41 26 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:39:41 26 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:39:41 26 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:39:41 26 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:39:41 26 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125143941 ] 00:39:41 26 Jan 2017 UTC: INFO: Base.py(1333): PID:4574 00:39:41 26 Jan 2017 UTC: INFO: Base.py(1375): Started processing 00:39:41 26 Jan 2017 UTC 00:39:41 26 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:39:41 26 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:39:41 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:39:41 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:39:41 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:2 00:39:41 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:2 calls_made:1 call_cycle:2 2241.1310 -15802.6960 01/26/17 00:37:17 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 00:39:41 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:2 00:39:41 26 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:2 calls_made:1 call_cycle:2 2241.1310 -15802.6960 01/26/17 00:37:17 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 00:39:41 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 00:39:41 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:2 00:39:41 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:2 calls_made:1 call_cycle:2 2241.1310 -15802.6960 01/26/17 00:37:17 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 00:39:42 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:2 00:39:42 26 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:2 calls_made:1 call_cycle:2 2241.1310 -15802.6960 01/26/17 00:37:17 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 00:39:42 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:39:42 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:2 00:39:42 26 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:2 calls_made:1 call_cycle:2 2241.1310 -15802.6960 01/26/17 00:37:17 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 00:39:42 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:39:42 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:2 00:39:42 26 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:2 calls_made:1 call_cycle:2 2241.1310 -15802.6960 01/26/17 00:37:17 UTC QUIT_COMMAND) to hramm@hawaii.edu 00:39:42 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:39:42 26 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:39:42 26 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:39:42 26 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:39:42 26 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:39:42 26 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:39:42 26 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:39:42 26 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:39:42 26 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 00:39:42 26 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 00:39:42 26 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 00:39:42 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.2.2 00:39:42 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.2.2 00:39:42 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.2.2 00:39:42 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:39:42 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:39:42 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:39:42 26 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:39:42 26 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:39:42 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:39:42 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:39:42 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 00:39:42 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:39:42 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:39:42 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:39:42 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:39:42 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:39:42 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 00:39:42 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:39:42 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:39:42 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:39:42 26 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:39:42 26 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:39:42 26 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:39:42 26 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:39:42 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:39:42 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:39:42 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:39:42 26 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 00:39:42 26 Jan 2017 UTC 01:22:44 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 7161 01:22:44 26 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 01:24:37 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 7301 01:24:37 26 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:24:37 26 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:24:37 26 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:24:37 26 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:24:37 26 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125152436 ] 01:24:37 26 Jan 2017 UTC: INFO: Base.py(1333): PID:7311 01:24:37 26 Jan 2017 UTC: INFO: Base.py(1375): Started processing 01:24:37 26 Jan 2017 UTC 01:24:37 26 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:24:37 26 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:24:37 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:24:37 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:24:37 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:0 01:24:37 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:3 calls_made:1 call_cycle:0 2241.1160 -15802.8880 01/26/17 01:21:01 UTC) to sdrifter@soest.hawaii.edu 01:24:37 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:0 01:24:37 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 01:24:37 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:0 01:24:37 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:3 calls_made:1 call_cycle:0 2241.1160 -15802.8880 01/26/17 01:21:01 UTC) to seaglider@km.soest.hawaii.edu 01:24:37 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:0 01:24:37 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:24:37 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:0 01:24:37 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:24:37 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:0 01:24:37 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:24:37 26 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:24:38 26 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:24:38 26 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:24:38 26 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:24:38 26 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:24:38 26 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:24:38 26 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:24:38 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0003lz 01:24:38 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0003lz.x00 01:24:38 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0003lz.r in process_file_group 01:24:38 26 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260003.log 01:24:38 26 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:24:38 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0003dz 01:24:38 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0003dz.x00 01:24:38 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0003dz.x01 01:24:38 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0003dz.x02 01:24:38 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0003dz.r in process_file_group 01:24:38 26 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [3] 01:24:38 26 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [3] 01:24:38 26 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260003) for profiles 01:24:38 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:24:38 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/321) 321 to QC_BAD because CT out of water 01:24:38 26 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.131m) 01:24:38 26 Jan 2017 UTC: INFO: QC.py(365): Changed (4/321) 3 70 319 320 to QC_PROBABLY_BAD because raw temperature spikes 01:24:38 26 Jan 2017 UTC: INFO: QC.py(180): Changed (4/321) 3 70 319 320 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:24:38 26 Jan 2017 UTC: INFO: QC.py(180): Changed (1/321) 321 to QC_BAD because changed raw cond implies changed raw salinity 01:24:38 26 Jan 2017 UTC: INFO: QC.py(365): Changed (4/321) 3 70 319 320 to QC_INTERPOLATED because temperature spikes 01:24:38 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (50/321) 55:104 to QC_BAD because slow apogee CT flow 01:24:38 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (9/321) 1:9 to QC_BAD because prior to dive start 01:24:38 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (3/321) 318:320 to QC_BAD because end of climb 01:24:38 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (63/321) 1:9 55:104 318:321 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:24:38 26 Jan 2017 UTC: INFO: QC.py(180): Changed (63/321) 1:9 55:104 318:321 to QC_BAD because changed corrected salin implies changed speed 01:24:39 26 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:24:39 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.38 cm/s 01:24:39 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 2.92 cm/s 01:24:39 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:24:39 26 Jan 2017 UTC: INFO: QC.py(180): Changed (4/321) 3 70 319 320 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 01:24:39 26 Jan 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/321) 184 to QC_BAD because slow flow in SBE43 01:24:39 26 Jan 2017 UTC: INFO: QC.py(180): Changed (4/321) 3 70 319 320 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 01:24:39 26 Jan 2017 UTC: INFO: QC.py(180): Changed (63/321) 1:9 55:104 318:321 to QC_BAD because changed salinity implies changed optode oxygen 01:24:39 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:24:39 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:24:39 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 3: Data set size for profile, binned and kkyy files reduced by 63 points, a 19.63% reduction 01:24:39 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.3 01:24:39 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.3 01:24:39 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.3 01:24:39 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:24:39 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:24:39 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:24:39 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:24:39 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 01:24:40 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 29, max_depth_dive_num = 3 01:24:40 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 01:24:40 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 01:24:40 26 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:24:40 26 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:24:40 26 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:24:40 26 Jan 2017 UTC /home/sg626/p6260003.log /home/sg626/p6260003.eng /home/sg626/p6260003.asc /home/sg626/p6260003.pro /home/sg626/p6260003.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 01:24:40 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:24:40 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:24:40 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 01:24:40 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:24:40 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:24:40 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:24:40 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:24:40 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:24:40 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 01:24:40 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:24:40 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:24:40 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:24:40 26 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:24:40 26 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:24:40 26 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:24:40 26 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:24:40 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:24:40 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:24:40 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:24:40 26 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 01:24:40 26 Jan 2017 UTC 01:27:01 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 7612 01:27:01 26 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 01:27:51 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 7705 01:27:51 26 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:27:51 26 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:27:51 26 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:27:51 26 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:27:51 26 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125152750 ] 01:27:51 26 Jan 2017 UTC: INFO: Base.py(1333): PID:7713 01:27:51 26 Jan 2017 UTC: INFO: Base.py(1375): Started processing 01:27:51 26 Jan 2017 UTC 01:27:51 26 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:27:51 26 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:27:51 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:27:51 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:27:51 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:1 01:27:51 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:3 calls_made:1 call_cycle:1 2241.1250 -15802.9280 01/26/17 01:25:12 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 01:27:51 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:1 01:27:51 26 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:3 calls_made:1 call_cycle:1 2241.1250 -15802.9280 01/26/17 01:25:12 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 01:27:51 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 01:27:51 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:1 01:27:51 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:3 calls_made:1 call_cycle:1 2241.1250 -15802.9280 01/26/17 01:25:12 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 01:27:51 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:1 01:27:51 26 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:3 calls_made:1 call_cycle:1 2241.1250 -15802.9280 01/26/17 01:25:12 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 01:27:51 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:27:51 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:1 01:27:51 26 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:3 calls_made:1 call_cycle:1 2241.1250 -15802.9280 01/26/17 01:25:12 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 01:27:51 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:27:51 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:1 01:27:51 26 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:3 calls_made:1 call_cycle:1 2241.1250 -15802.9280 01/26/17 01:25:12 UTC QUIT_COMMAND) to hramm@hawaii.edu 01:27:51 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:27:51 26 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:27:52 26 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:27:52 26 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:27:52 26 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:27:52 26 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:27:52 26 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:27:52 26 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:27:52 26 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 01:27:52 26 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 01:27:52 26 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 01:27:52 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.3.1 01:27:52 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.3.1 01:27:52 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.3.1 01:27:52 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:27:52 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:27:52 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:27:52 26 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:27:52 26 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:27:52 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:27:52 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:27:52 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 01:27:52 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:27:52 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:27:52 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:27:52 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:27:52 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:27:52 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 01:27:52 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:27:52 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:27:52 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:27:52 26 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:27:52 26 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:27:52 26 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:27:52 26 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:27:52 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:27:52 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:27:52 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:27:52 26 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 01:27:52 26 Jan 2017 UTC 01:32:43 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 8242 01:32:43 26 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 01:33:35 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 8347 01:33:35 26 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:33:35 26 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:33:35 26 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:33:35 26 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:33:35 26 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125153334 ] 01:33:35 26 Jan 2017 UTC: INFO: Base.py(1333): PID:8355 01:33:35 26 Jan 2017 UTC: INFO: Base.py(1375): Started processing 01:33:35 26 Jan 2017 UTC 01:33:35 26 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:33:35 26 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:33:35 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:33:35 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:33:35 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:2 01:33:35 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:3 calls_made:1 call_cycle:2 2241.1440 -15802.9910 01/26/17 01:31:04 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 01:33:35 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:2 01:33:35 26 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:3 calls_made:1 call_cycle:2 2241.1440 -15802.9910 01/26/17 01:31:04 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 01:33:35 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 01:33:35 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:2 01:33:35 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:3 calls_made:1 call_cycle:2 2241.1440 -15802.9910 01/26/17 01:31:04 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 01:33:35 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:2 01:33:35 26 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:3 calls_made:1 call_cycle:2 2241.1440 -15802.9910 01/26/17 01:31:04 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 01:33:35 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:33:35 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:2 01:33:35 26 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:3 calls_made:1 call_cycle:2 2241.1440 -15802.9910 01/26/17 01:31:04 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 01:33:35 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:33:35 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:2 01:33:35 26 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:3 calls_made:1 call_cycle:2 2241.1440 -15802.9910 01/26/17 01:31:04 UTC QUIT_COMMAND) to hramm@hawaii.edu 01:33:35 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:33:35 26 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:33:36 26 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:33:36 26 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:33:36 26 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:33:36 26 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:33:36 26 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:33:36 26 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:33:36 26 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 01:33:36 26 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 01:33:36 26 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 01:33:36 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.3.2 01:33:36 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.3.2 01:33:36 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./science to ./science.3.2 01:33:36 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:33:36 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:33:36 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:33:36 26 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:33:36 26 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:33:36 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:33:36 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:33:36 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 01:33:36 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:33:36 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:33:36 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:33:36 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:33:36 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:33:36 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 01:33:36 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:33:36 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:33:36 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:33:36 26 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:33:36 26 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:33:36 26 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:33:36 26 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:33:36 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:33:36 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:33:36 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:33:36 26 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 01:33:36 26 Jan 2017 UTC 02:12:40 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 10342 02:12:40 26 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:14:36 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 10485 02:14:36 26 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:14:36 26 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:14:36 26 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:14:36 26 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:14:36 26 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125161435 ] 02:14:36 26 Jan 2017 UTC: INFO: Base.py(1333): PID:10493 02:14:36 26 Jan 2017 UTC: INFO: Base.py(1375): Started processing 02:14:36 26 Jan 2017 UTC 02:14:36 26 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:14:36 26 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:14:36 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:14:36 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:14:36 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:4 calls_made:1 call_cycle:0 02:14:36 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:4 calls_made:1 call_cycle:0 2241.1970 -15803.0640 01/26/17 02:10:58 UTC) to sdrifter@soest.hawaii.edu 02:14:36 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:4 calls_made:1 call_cycle:0 02:14:36 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 02:14:36 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:4 calls_made:1 call_cycle:0 02:14:36 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:4 calls_made:1 call_cycle:0 2241.1970 -15803.0640 01/26/17 02:10:58 UTC) to seaglider@km.soest.hawaii.edu 02:14:36 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:4 calls_made:1 call_cycle:0 02:14:36 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:14:36 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:4 calls_made:1 call_cycle:0 02:14:36 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:14:36 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:4 calls_made:1 call_cycle:0 02:14:36 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:14:36 26 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:14:37 26 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:14:37 26 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:14:37 26 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:14:37 26 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:14:37 26 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:14:37 26 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:14:37 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0004lz 02:14:37 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0004lz.x00 02:14:37 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0004lz.r in process_file_group 02:14:37 26 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260004.log 02:14:37 26 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 02:14:37 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0004dz 02:14:37 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0004dz.x00 02:14:37 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0004dz.x01 02:14:37 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0004dz.x02 02:14:37 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0004dz.r in process_file_group 02:14:37 26 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [4] 02:14:37 26 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [4] 02:14:37 26 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260004) for profiles 02:14:37 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 02:14:37 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/282) 281 to QC_BAD because CT out of water 02:14:37 26 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.133m) 02:14:37 26 Jan 2017 UTC: INFO: QC.py(365): Changed (3/282) 2 83 281 to QC_PROBABLY_BAD because raw temperature spikes 02:14:37 26 Jan 2017 UTC: INFO: QC.py(377): Changed (1/282) 281 to QC_BAD because raw salinity below bound 02:14:37 26 Jan 2017 UTC: INFO: QC.py(408): Changed (1/282) 83 to QC_PROBABLY_BAD because raw conductivity spikes 02:14:37 26 Jan 2017 UTC: INFO: QC.py(180): Changed (2/282) 2 83 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:14:37 26 Jan 2017 UTC: INFO: QC.py(365): Changed (3/282) 2 83 281 to QC_INTERPOLATED because temperature spikes 02:14:37 26 Jan 2017 UTC: INFO: QC.py(377): Changed (1/282) 281 to QC_BAD because salinity below bound 02:14:37 26 Jan 2017 UTC: INFO: QC.py(408): Changed (1/282) 83 to QC_INTERPOLATED because conductivity spikes 02:14:37 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (25/282) 70:94 to QC_BAD because slow apogee CT flow 02:14:37 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/282) 1:7 to QC_BAD because prior to dive start 02:14:37 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/282) 280 282 to QC_BAD because end of climb 02:14:37 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (35/282) 1:7 70:94 280:282 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:14:37 26 Jan 2017 UTC: INFO: QC.py(180): Changed (35/282) 1:7 70:94 280:282 to QC_BAD because changed corrected salin implies changed speed 02:14:37 26 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:14:37 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 27.10 cm/s 02:14:37 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.02 cm/s 02:14:37 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:14:37 26 Jan 2017 UTC: INFO: QC.py(180): Changed (3/282) 2 83 281 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:14:37 26 Jan 2017 UTC: INFO: QC.py(180): Changed (3/282) 2 83 281 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:14:37 26 Jan 2017 UTC: INFO: QC.py(180): Changed (35/282) 1:7 70:94 280:282 to QC_BAD because changed salinity implies changed optode oxygen 02:14:37 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:14:37 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 02:14:38 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 4: Data set size for profile, binned and kkyy files reduced by 35 points, a 12.41% reduction 02:14:38 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.4 02:14:38 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:14:38 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:14:38 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:14:38 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 02:14:38 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 02:14:38 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 29, max_depth_dive_num = 3 02:14:38 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 02:14:38 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 02:14:39 26 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:14:39 26 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:14:39 26 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:14:39 26 Jan 2017 UTC /home/sg626/p6260004.log /home/sg626/p6260004.eng /home/sg626/p6260004.asc /home/sg626/p6260004.pro /home/sg626/p6260004.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 02:14:39 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:14:39 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:14:39 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 02:14:39 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:14:39 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:14:39 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:14:39 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:14:39 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:14:39 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 02:14:39 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:14:39 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:14:39 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:14:39 26 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:14:39 26 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:14:39 26 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:14:39 26 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:14:39 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:14:39 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:14:39 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:14:39 26 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 02:14:39 26 Jan 2017 UTC 02:16:43 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 10775 02:16:43 26 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:17:18 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 10867 02:17:18 26 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:17:18 26 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:17:18 26 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:17:18 26 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:17:18 26 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125161718 ] 02:17:18 26 Jan 2017 UTC: INFO: Base.py(1333): PID:10875 02:17:18 26 Jan 2017 UTC: INFO: Base.py(1375): Started processing 02:17:18 26 Jan 2017 UTC 02:17:18 26 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:17:18 26 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:17:18 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:17:18 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:17:18 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:4 calls_made:1 call_cycle:1 02:17:18 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:4 calls_made:1 call_cycle:1 2241.2220 -15803.1120 01/26/17 02:15:21 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 02:17:19 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:4 calls_made:1 call_cycle:1 02:17:19 26 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:4 calls_made:1 call_cycle:1 2241.2220 -15803.1120 01/26/17 02:15:21 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 02:17:19 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 02:17:19 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:4 calls_made:1 call_cycle:1 02:17:19 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:4 calls_made:1 call_cycle:1 2241.2220 -15803.1120 01/26/17 02:15:21 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 02:17:19 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:4 calls_made:1 call_cycle:1 02:17:19 26 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:4 calls_made:1 call_cycle:1 2241.2220 -15803.1120 01/26/17 02:15:21 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 02:17:19 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:17:19 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:4 calls_made:1 call_cycle:1 02:17:19 26 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:4 calls_made:1 call_cycle:1 2241.2220 -15803.1120 01/26/17 02:15:21 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 02:17:19 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:17:19 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:4 calls_made:1 call_cycle:1 02:17:19 26 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:4 calls_made:1 call_cycle:1 2241.2220 -15803.1120 01/26/17 02:15:21 UTC QUIT_COMMAND) to hramm@hawaii.edu 02:17:19 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:17:19 26 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:17:20 26 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:17:20 26 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:17:20 26 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:17:20 26 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:17:20 26 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:17:20 26 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:17:20 26 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 02:17:20 26 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 02:17:20 26 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 02:17:20 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.4.1 02:17:20 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:17:20 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:17:20 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:17:20 26 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:17:20 26 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:17:20 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:17:20 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:17:20 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 02:17:20 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:17:20 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:17:20 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:17:20 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:17:20 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:17:20 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 02:17:20 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:17:20 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:17:20 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:17:20 26 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:17:20 26 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:17:20 26 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:17:20 26 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:17:20 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:17:20 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:17:20 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:17:20 26 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 02:17:20 26 Jan 2017 UTC 02:55:54 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 12907 02:55:54 26 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:57:34 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 12974 02:57:34 26 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:57:34 26 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:57:34 26 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:57:34 26 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:57:34 26 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125165734 ] 02:57:34 26 Jan 2017 UTC: INFO: Base.py(1333): PID:12981 02:57:34 26 Jan 2017 UTC: INFO: Base.py(1375): Started processing 02:57:34 26 Jan 2017 UTC 02:57:34 26 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:57:35 26 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:57:35 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:57:35 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:57:35 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:1 call_cycle:0 02:57:35 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:5 calls_made:1 call_cycle:0 2241.2190 -15803.1460 01/26/17 02:54:14 UTC) to sdrifter@soest.hawaii.edu 02:57:35 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:1 call_cycle:0 02:57:35 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 02:57:35 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:1 call_cycle:0 02:57:35 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:5 calls_made:1 call_cycle:0 2241.2190 -15803.1460 01/26/17 02:54:14 UTC) to seaglider@km.soest.hawaii.edu 02:57:35 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:1 call_cycle:0 02:57:35 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:57:35 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:1 call_cycle:0 02:57:35 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:57:35 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:1 call_cycle:0 02:57:35 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:57:35 26 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:57:36 26 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:57:36 26 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:57:36 26 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:57:36 26 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:57:36 26 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:57:36 26 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:57:36 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0005lz 02:57:36 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0005lz.x00 02:57:36 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0005lz.r in process_file_group 02:57:36 26 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260005.log 02:57:36 26 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 02:57:36 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0005dz 02:57:36 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0005dz.x00 02:57:36 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0005dz.x01 02:57:36 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0005dz.r in process_file_group 02:57:36 26 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [5] 02:57:36 26 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [5] 02:57:36 26 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260005) for profiles 02:57:36 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 02:57:36 26 Jan 2017 UTC: INFO: QC.py(365): Changed (2/277) 87 276 to QC_PROBABLY_BAD because raw temperature spikes 02:57:36 26 Jan 2017 UTC: INFO: QC.py(377): Changed (1/277) 277 to QC_BAD because raw salinity below bound 02:57:36 26 Jan 2017 UTC: INFO: QC.py(388): Changed (1/277) 277 to QC_BAD because bad raw salinity indicates raw conductivity issues 02:57:36 26 Jan 2017 UTC: INFO: QC.py(408): Changed (1/277) 87 to QC_PROBABLY_BAD because raw conductivity spikes 02:57:36 26 Jan 2017 UTC: INFO: QC.py(180): Changed (2/277) 87 276 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:57:36 26 Jan 2017 UTC: INFO: QC.py(365): Changed (2/277) 87 276 to QC_INTERPOLATED because temperature spikes 02:57:36 26 Jan 2017 UTC: INFO: QC.py(377): Changed (1/277) 277 to QC_BAD because salinity below bound 02:57:36 26 Jan 2017 UTC: INFO: QC.py(388): Changed (1/277) 277 to QC_BAD because bad salinity indicates conductivity issues 02:57:36 26 Jan 2017 UTC: INFO: QC.py(408): Changed (1/277) 87 to QC_INTERPOLATED because conductivity spikes 02:57:36 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (23/277) 75:97 to QC_BAD because slow apogee CT flow 02:57:36 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/277) 1:7 to QC_BAD because prior to dive start 02:57:36 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/277) 275 276 to QC_BAD because end of climb 02:57:36 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (33/277) 1:7 75:97 275:277 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:57:36 26 Jan 2017 UTC: INFO: QC.py(180): Changed (33/277) 1:7 75:97 275:277 to QC_BAD because changed corrected salin implies changed speed 02:57:36 26 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:57:36 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 26.88 cm/s 02:57:36 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 2.93 cm/s 02:57:36 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:57:36 26 Jan 2017 UTC: INFO: QC.py(180): Changed (2/277) 87 276 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:57:36 26 Jan 2017 UTC: INFO: QC.py(180): Changed (2/277) 87 276 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:57:36 26 Jan 2017 UTC: INFO: QC.py(180): Changed (33/277) 1:7 75:97 275:277 to QC_BAD because changed salinity implies changed optode oxygen 02:57:36 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:57:36 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 02:57:37 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 5: Data set size for profile, binned and kkyy files reduced by 33 points, a 11.91% reduction 02:57:37 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.5 02:57:37 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:57:37 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:57:37 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:57:37 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 02:57:37 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 02:57:37 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 29, max_depth_dive_num = 3 02:57:37 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 02:57:37 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 02:57:38 26 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:57:38 26 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:57:38 26 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:57:38 26 Jan 2017 UTC /home/sg626/p6260005.log /home/sg626/p6260005.eng /home/sg626/p6260005.asc /home/sg626/p6260005.pro /home/sg626/p6260005.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 02:57:38 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:57:38 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:57:38 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 02:57:38 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:57:38 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:57:38 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:57:38 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:57:38 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:57:38 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 02:57:38 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:57:38 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:57:38 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:57:38 26 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:57:38 26 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:57:38 26 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:57:38 26 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:57:38 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:57:38 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:57:38 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:57:38 26 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 02:57:38 26 Jan 2017 UTC 02:59:34 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 13260 02:59:34 26 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:00:10 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 13433 03:00:10 26 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:00:10 26 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:00:10 26 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:00:10 26 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:00:10 26 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125170009 ] 03:00:10 26 Jan 2017 UTC: INFO: Base.py(1333): PID:13441 03:00:10 26 Jan 2017 UTC: INFO: Base.py(1375): Started processing 03:00:10 26 Jan 2017 UTC 03:00:10 26 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:00:10 26 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:00:10 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:00:10 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:00:10 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:1 call_cycle:1 03:00:10 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:5 calls_made:1 call_cycle:1 2241.2200 -15803.1830 01/26/17 02:58:13 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 03:00:10 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:1 call_cycle:1 03:00:10 26 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:5 calls_made:1 call_cycle:1 2241.2200 -15803.1830 01/26/17 02:58:13 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 03:00:10 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 03:00:10 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:1 call_cycle:1 03:00:10 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:5 calls_made:1 call_cycle:1 2241.2200 -15803.1830 01/26/17 02:58:13 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 03:00:10 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:1 call_cycle:1 03:00:10 26 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:5 calls_made:1 call_cycle:1 2241.2200 -15803.1830 01/26/17 02:58:13 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 03:00:10 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:00:10 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:1 call_cycle:1 03:00:10 26 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:5 calls_made:1 call_cycle:1 2241.2200 -15803.1830 01/26/17 02:58:13 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 03:00:10 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:00:10 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:1 call_cycle:1 03:00:10 26 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:5 calls_made:1 call_cycle:1 2241.2200 -15803.1830 01/26/17 02:58:13 UTC QUIT_COMMAND) to hramm@hawaii.edu 03:00:10 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:00:10 26 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:00:11 26 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:00:11 26 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:00:11 26 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:00:11 26 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:00:11 26 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:00:11 26 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:00:11 26 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 03:00:11 26 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 03:00:11 26 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 03:00:11 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.5.1 03:00:11 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:00:11 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:00:11 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:00:11 26 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:00:11 26 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:00:11 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:00:11 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:00:11 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 03:00:11 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:00:11 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:00:11 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:00:11 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:00:11 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:00:11 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 03:00:11 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:00:11 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:00:11 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:00:11 26 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:00:11 26 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:00:11 26 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:00:11 26 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:00:11 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:00:11 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:00:11 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:00:11 26 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 03:00:11 26 Jan 2017 UTC 03:04:45 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 13972 03:04:45 26 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:05:20 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 14063 03:05:20 26 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:05:20 26 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:05:20 26 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:05:20 26 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:05:20 26 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125170519 ] 03:05:20 26 Jan 2017 UTC: INFO: Base.py(1333): PID:14071 03:05:20 26 Jan 2017 UTC: INFO: Base.py(1375): Started processing 03:05:20 26 Jan 2017 UTC 03:05:20 26 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:05:20 26 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:05:20 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:05:20 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:05:20 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:1 call_cycle:2 03:05:20 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:5 calls_made:1 call_cycle:2 2241.2260 -15803.2360 01/26/17 03:03:31 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 03:05:20 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:1 call_cycle:2 03:05:20 26 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:5 calls_made:1 call_cycle:2 2241.2260 -15803.2360 01/26/17 03:03:31 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 03:05:20 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 03:05:20 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:1 call_cycle:2 03:05:20 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:5 calls_made:1 call_cycle:2 2241.2260 -15803.2360 01/26/17 03:03:31 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 03:05:20 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:1 call_cycle:2 03:05:20 26 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:5 calls_made:1 call_cycle:2 2241.2260 -15803.2360 01/26/17 03:03:31 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 03:05:20 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:05:20 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:1 call_cycle:2 03:05:20 26 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:5 calls_made:1 call_cycle:2 2241.2260 -15803.2360 01/26/17 03:03:31 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 03:05:20 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:05:20 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:1 call_cycle:2 03:05:20 26 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:5 calls_made:1 call_cycle:2 2241.2260 -15803.2360 01/26/17 03:03:31 UTC QUIT_COMMAND) to hramm@hawaii.edu 03:05:20 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:05:20 26 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:05:21 26 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:05:21 26 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:05:21 26 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:05:21 26 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:05:21 26 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:05:21 26 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:05:21 26 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 03:05:21 26 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 03:05:21 26 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 03:05:21 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.5.2 03:05:21 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:05:21 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:05:21 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:05:21 26 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:05:21 26 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:05:21 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:05:21 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:05:21 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 03:05:21 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:05:21 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:05:21 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:05:21 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:05:21 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:05:21 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 03:05:21 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:05:21 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:05:21 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:05:21 26 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:05:21 26 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:05:21 26 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:05:21 26 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:05:21 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:05:21 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:05:21 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:05:21 26 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 03:05:21 26 Jan 2017 UTC 04:01:48 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 16803 04:01:48 26 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:05:05 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 16930 04:05:05 26 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:05:05 26 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:05:05 26 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:05:05 26 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:05:05 26 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125180504 ] 04:05:05 26 Jan 2017 UTC: INFO: Base.py(1333): PID:16938 04:05:05 26 Jan 2017 UTC: INFO: Base.py(1375): Started processing 04:05:05 26 Jan 2017 UTC 04:05:05 26 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:05:05 26 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:05:05 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:05:05 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:05:05 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:6 calls_made:1 call_cycle:0 04:05:05 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:6 calls_made:1 call_cycle:0 2241.2250 -15803.2400 01/26/17 04:00:02 UTC) to sdrifter@soest.hawaii.edu 04:05:05 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:6 calls_made:1 call_cycle:0 04:05:05 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 04:05:05 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:6 calls_made:1 call_cycle:0 04:05:05 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:6 calls_made:1 call_cycle:0 2241.2250 -15803.2400 01/26/17 04:00:02 UTC) to seaglider@km.soest.hawaii.edu 04:05:05 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:6 calls_made:1 call_cycle:0 04:05:05 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:05:05 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:6 calls_made:1 call_cycle:0 04:05:05 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:05:05 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:6 calls_made:1 call_cycle:0 04:05:05 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:05:05 26 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:05:06 26 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:05:06 26 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:05:06 26 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:05:06 26 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:05:06 26 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:05:06 26 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:05:06 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0006lz 04:05:06 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0006lz.x00 04:05:06 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0006lz.r in process_file_group 04:05:06 26 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260006.log 04:05:06 26 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:05:06 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0006kz 04:05:06 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0006kz.x00 04:05:06 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0006kz.x01 04:05:06 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0006kz.x02 04:05:06 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0006kz.x03 04:05:06 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0006kz.x04 04:05:06 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0006kz.r in process_file_group 04:05:06 26 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:05:06 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0006dz 04:05:06 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0006dz.x00 04:05:06 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0006dz.x01 04:05:06 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0006dz.x02 04:05:06 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0006dz.r in process_file_group 04:05:06 26 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [6] 04:05:06 26 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [6] 04:05:06 26 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260006) for profiles 04:05:06 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 04:05:06 26 Jan 2017 UTC: INFO: QC.py(365): Changed (3/400) 133 134 398 to QC_PROBABLY_BAD because raw temperature spikes 04:05:06 26 Jan 2017 UTC: INFO: QC.py(180): Changed (3/400) 133 134 398 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:05:06 26 Jan 2017 UTC: INFO: QC.py(365): Changed (3/400) 133 134 398 to QC_INTERPOLATED because temperature spikes 04:05:06 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (21/400) 120:140 to QC_BAD because slow apogee CT flow 04:05:06 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/400) 1:7 to QC_BAD because prior to dive start 04:05:06 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (3/400) 398:400 to QC_BAD because end of climb 04:05:06 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (31/400) 1:7 120:140 398:400 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:05:06 26 Jan 2017 UTC: INFO: QC.py(180): Changed (31/400) 1:7 120:140 398:400 to QC_BAD because changed corrected salin implies changed speed 04:05:07 26 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:05:07 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 27.43 cm/s 04:05:07 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 2.64 cm/s 04:05:07 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:05:07 26 Jan 2017 UTC: INFO: QC.py(180): Changed (3/400) 133 134 398 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:05:07 26 Jan 2017 UTC: INFO: QC.py(180): Changed (3/400) 133 134 398 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:05:07 26 Jan 2017 UTC: INFO: QC.py(180): Changed (31/400) 1:7 120:140 398:400 to QC_BAD because changed salinity implies changed optode oxygen 04:05:07 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:05:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 04:05:07 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 6: Data set size for profile, binned and kkyy files reduced by 31 points, a 7.75% reduction 04:05:07 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.6 04:05:07 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:05:07 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:05:07 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:05:07 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 04:05:07 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 04:05:08 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 38, max_depth_dive_num = 6 04:05:08 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 04:05:08 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 04:05:09 26 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:05:09 26 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:05:09 26 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:05:09 26 Jan 2017 UTC /home/sg626/p6260006.log /home/sg626/p6260006.eng /home/sg626/p6260006.cap /home/sg626/p6260006.asc /home/sg626/p6260006.pro /home/sg626/p6260006.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 04:05:09 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:05:09 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:05:09 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 04:05:09 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:05:09 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:05:09 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:05:09 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:05:09 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:05:09 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 04:05:09 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:05:09 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:05:09 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:05:09 26 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:05:09 26 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:05:09 26 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:05:09 26 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:05:09 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:05:09 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:05:09 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:05:09 26 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 04:05:09 26 Jan 2017 UTC 04:57:02 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 18996 04:57:02 26 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:58:55 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 19139 04:58:55 26 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:58:55 26 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:58:55 26 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:58:55 26 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:58:55 26 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125185854 ] 04:58:55 26 Jan 2017 UTC: INFO: Base.py(1333): PID:19147 04:58:55 26 Jan 2017 UTC: INFO: Base.py(1375): Started processing 04:58:55 26 Jan 2017 UTC 04:58:55 26 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:58:55 26 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:58:55 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:58:55 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:58:55 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:7 calls_made:1 call_cycle:0 04:58:55 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:7 calls_made:1 call_cycle:0 2241.1650 -15803.2230 01/26/17 04:55:14 UTC) to sdrifter@soest.hawaii.edu 04:58:55 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:7 calls_made:1 call_cycle:0 04:58:55 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 04:58:55 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:7 calls_made:1 call_cycle:0 04:58:55 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:7 calls_made:1 call_cycle:0 2241.1650 -15803.2230 01/26/17 04:55:14 UTC) to seaglider@km.soest.hawaii.edu 04:58:55 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:7 calls_made:1 call_cycle:0 04:58:55 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:58:55 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:7 calls_made:1 call_cycle:0 04:58:55 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:58:55 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:7 calls_made:1 call_cycle:0 04:58:55 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:58:55 26 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:58:56 26 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:58:56 26 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:58:56 26 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:58:56 26 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:58:56 26 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:58:56 26 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:58:56 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0007lz 04:58:56 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0007lz.x00 04:58:56 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0007lz.r in process_file_group 04:58:56 26 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260007.log 04:58:56 26 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:58:56 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0007dz 04:58:56 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0007dz.x00 04:58:56 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0007dz.x01 04:58:56 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0007dz.x02 04:58:56 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0007dz.r in process_file_group 04:58:56 26 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [7] 04:58:56 26 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [7] 04:58:56 26 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260007) for profiles 04:58:56 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 04:58:56 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/376) 374 to QC_BAD because CT out of water 04:58:56 26 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.007m) 04:58:56 26 Jan 2017 UTC: INFO: QC.py(365): Changed (4/376) 2 132 374 375 to QC_PROBABLY_BAD because raw temperature spikes 04:58:56 26 Jan 2017 UTC: INFO: QC.py(408): Changed (1/376) 375 to QC_PROBABLY_BAD because raw conductivity spikes 04:58:56 26 Jan 2017 UTC: INFO: QC.py(180): Changed (4/376) 2 132 374 375 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:58:56 26 Jan 2017 UTC: INFO: QC.py(180): Changed (1/376) 374 to QC_BAD because changed raw cond implies changed raw salinity 04:58:56 26 Jan 2017 UTC: INFO: QC.py(365): Changed (4/376) 2 132 374 375 to QC_INTERPOLATED because temperature spikes 04:58:56 26 Jan 2017 UTC: INFO: QC.py(408): Changed (1/376) 375 to QC_INTERPOLATED because conductivity spikes 04:58:56 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (21/376) 118:138 to QC_BAD because slow apogee CT flow 04:58:56 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/376) 1:7 to QC_BAD because prior to dive start 04:58:56 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (3/376) 373 375 376 to QC_BAD because end of climb 04:58:56 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (32/376) 1:7 118:138 373:376 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:58:56 26 Jan 2017 UTC: INFO: QC.py(180): Changed (32/376) 1:7 118:138 373:376 to QC_BAD because changed corrected salin implies changed speed 04:58:57 26 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:58:57 26 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 7 interp_salinity data_points in_between 144 149 % suspect thermal-inertia points 146 04:58:57 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.10 cm/s 04:58:57 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 2.46 cm/s 04:58:57 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:58:57 26 Jan 2017 UTC: INFO: QC.py(180): Changed (4/376) 2 132 374 375 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:58:57 26 Jan 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/376) 300 to QC_BAD because bad aa4330 oyxgen 04:58:57 26 Jan 2017 UTC: INFO: QC.py(180): Changed (4/376) 2 132 374 375 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:58:57 26 Jan 2017 UTC: INFO: QC.py(180): Changed (32/376) 1:7 118:138 373:376 to QC_BAD because changed salinity implies changed optode oxygen 04:58:57 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:58:57 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 04:58:57 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 7: Data set size for profile, binned and kkyy files reduced by 32 points, a 8.51% reduction 04:58:57 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.7 04:58:57 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:58:57 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:58:57 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:58:57 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 04:58:57 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 04:58:58 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 38, max_depth_dive_num = 6 04:58:58 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 04:58:58 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 04:58:59 26 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:58:59 26 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:58:59 26 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:58:59 26 Jan 2017 UTC /home/sg626/p6260007.log /home/sg626/p6260007.eng /home/sg626/p6260007.asc /home/sg626/p6260007.pro /home/sg626/p6260007.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 04:58:59 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:58:59 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:58:59 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 04:58:59 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:58:59 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:58:59 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:58:59 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:58:59 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:58:59 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 04:58:59 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:58:59 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:58:59 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:58:59 26 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:58:59 26 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:58:59 26 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:58:59 26 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:58:59 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:58:59 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:58:59 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:58:59 26 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 04:58:59 26 Jan 2017 UTC 06:23:05 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 24238 06:23:05 26 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:25:04 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 24369 06:25:04 26 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:25:04 26 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 06:25:04 26 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 06:25:04 26 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:25:04 26 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125202504 ] 06:25:04 26 Jan 2017 UTC: INFO: Base.py(1333): PID:24376 06:25:05 26 Jan 2017 UTC: INFO: Base.py(1375): Started processing 06:25:05 26 Jan 2017 UTC 06:25:05 26 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 06:25:05 26 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 06:25:05 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:25:05 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:25:05 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:8 calls_made:1 call_cycle:0 06:25:05 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:8 calls_made:1 call_cycle:0 2241.1570 -15803.0870 01/26/17 06:21:19 UTC) to sdrifter@soest.hawaii.edu 06:25:05 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:8 calls_made:1 call_cycle:0 06:25:05 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 06:25:05 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:8 calls_made:1 call_cycle:0 06:25:05 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:8 calls_made:1 call_cycle:0 2241.1570 -15803.0870 01/26/17 06:21:19 UTC) to seaglider@km.soest.hawaii.edu 06:25:05 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:8 calls_made:1 call_cycle:0 06:25:05 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:25:05 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:8 calls_made:1 call_cycle:0 06:25:05 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:25:05 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:8 calls_made:1 call_cycle:0 06:25:05 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:25:05 26 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:25:06 26 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:25:06 26 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:25:06 26 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 06:25:06 26 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:25:06 26 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:25:06 26 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 06:25:06 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0008lz 06:25:06 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0008lz.x00 06:25:06 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0008lz.r in process_file_group 06:25:06 26 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260008.log 06:25:06 26 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 06:25:06 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0008dz 06:25:06 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0008dz.x00 06:25:06 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0008dz.x01 06:25:06 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0008dz.x02 06:25:06 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0008dz.r in process_file_group 06:25:06 26 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [8] 06:25:06 26 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [8] 06:25:06 26 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260008) for profiles 06:25:06 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 06:25:06 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/424) 421 424 to QC_BAD because CT out of water 06:25:06 26 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.130m) 06:25:06 26 Jan 2017 UTC: INFO: QC.py(365): Changed (3/424) 2 421 422 to QC_PROBABLY_BAD because raw temperature spikes 06:25:06 26 Jan 2017 UTC: INFO: QC.py(408): Changed (1/424) 2 to QC_PROBABLY_BAD because raw conductivity spikes 06:25:06 26 Jan 2017 UTC: INFO: QC.py(180): Changed (3/424) 2 421 422 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 06:25:06 26 Jan 2017 UTC: INFO: QC.py(180): Changed (2/424) 421 424 to QC_BAD because changed raw cond implies changed raw salinity 06:25:06 26 Jan 2017 UTC: INFO: QC.py(365): Changed (3/424) 2 421 422 to QC_INTERPOLATED because temperature spikes 06:25:06 26 Jan 2017 UTC: INFO: QC.py(408): Changed (1/424) 2 to QC_INTERPOLATED because conductivity spikes 06:25:06 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/424) 152:156 to QC_BAD because slow apogee CT flow 06:25:06 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/424) 1:6 to QC_BAD because prior to dive start 06:25:06 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (3/424) 420 422 423 to QC_BAD because end of climb 06:25:06 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/424) 1:6 152:156 420:424 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 06:25:06 26 Jan 2017 UTC: INFO: QC.py(180): Changed (16/424) 1:6 152:156 420:424 to QC_BAD because changed corrected salin implies changed speed 06:25:07 26 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 06:25:07 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.24 cm/s 06:25:07 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.65 cm/s 06:25:07 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 06:25:07 26 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (38/424) 134 135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 06:25:07 26 Jan 2017 UTC: INFO: QC.py(180): Changed (3/424) 2 421 422 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 06:25:07 26 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (38/424) 134 135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 06:25:07 26 Jan 2017 UTC: INFO: QC.py(180): Changed (3/424) 2 421 422 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 06:25:07 26 Jan 2017 UTC: INFO: QC.py(180): Changed (16/424) 1:6 152:156 420:424 to QC_BAD because changed salinity implies changed optode oxygen 06:25:07 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 06:25:07 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 06:25:07 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 8: Data set size for profile, binned and kkyy files reduced by 16 points, a 3.77% reduction 06:25:07 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.8 06:25:07 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:25:07 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:25:07 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:25:07 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 06:25:07 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 06:25:08 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 62, max_depth_dive_num = 8 06:25:09 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 06:25:09 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 06:25:09 26 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:25:09 26 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:25:09 26 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 06:25:09 26 Jan 2017 UTC /home/sg626/p6260008.log /home/sg626/p6260008.eng /home/sg626/p6260008.asc /home/sg626/p6260008.pro /home/sg626/p6260008.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 06:25:09 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:25:09 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:25:09 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 06:25:09 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:25:09 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:25:09 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:25:09 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:25:09 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:25:09 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 06:25:09 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:25:09 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:25:09 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:25:09 26 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 06:25:09 26 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 06:25:09 26 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 06:25:09 26 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 06:25:09 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:25:09 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:25:09 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:25:09 26 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 06:25:09 26 Jan 2017 UTC 07:50:07 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 28986 07:50:07 26 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:52:09 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 29138 07:52:09 26 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:52:09 26 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:52:09 26 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:52:09 26 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:52:09 26 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125215208 ] 07:52:09 26 Jan 2017 UTC: INFO: Base.py(1333): PID:29146 07:52:09 26 Jan 2017 UTC: INFO: Base.py(1375): Started processing 07:52:09 26 Jan 2017 UTC 07:52:09 26 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:52:09 26 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:52:09 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:52:09 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:52:09 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:9 calls_made:2 call_cycle:0 07:52:09 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:9 calls_made:2 call_cycle:0 2241.2020 -15803.1410 01/26/17 07:45:52 UTC) to sdrifter@soest.hawaii.edu 07:52:09 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:9 calls_made:2 call_cycle:0 07:52:09 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 07:52:09 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:9 calls_made:2 call_cycle:0 07:52:09 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:9 calls_made:2 call_cycle:0 2241.2020 -15803.1410 01/26/17 07:45:52 UTC) to seaglider@km.soest.hawaii.edu 07:52:09 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:9 calls_made:2 call_cycle:0 07:52:09 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:52:09 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:9 calls_made:2 call_cycle:0 07:52:09 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:52:09 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:9 calls_made:2 call_cycle:0 07:52:09 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:52:09 26 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:52:10 26 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:52:10 26 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:52:10 26 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:52:10 26 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:52:10 26 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:52:10 26 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:52:10 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0009lz 07:52:10 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0009lz.x00 07:52:10 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0009lz.r in process_file_group 07:52:10 26 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260009.log 07:52:10 26 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:52:10 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0009dz 07:52:10 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0009dz.x00 07:52:10 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0009dz.x01 07:52:10 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0009dz.x02 07:52:10 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0009dz.r in process_file_group 07:52:11 26 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [9] 07:52:11 26 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [9] 07:52:11 26 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260009) for profiles 07:52:11 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 07:52:11 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/413) 413 to QC_BAD because CT out of water 07:52:11 26 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.058m) 07:52:11 26 Jan 2017 UTC: INFO: QC.py(365): Changed (2/413) 155 156 to QC_PROBABLY_BAD because raw temperature spikes 07:52:11 26 Jan 2017 UTC: INFO: QC.py(377): Changed (1/413) 413 to QC_BAD because raw salinity below bound 07:52:11 26 Jan 2017 UTC: INFO: QC.py(408): Changed (1/413) 155 to QC_PROBABLY_BAD because raw conductivity spikes 07:52:11 26 Jan 2017 UTC: INFO: QC.py(180): Changed (2/413) 155 156 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:52:11 26 Jan 2017 UTC: INFO: QC.py(365): Changed (2/413) 155 156 to QC_INTERPOLATED because temperature spikes 07:52:11 26 Jan 2017 UTC: INFO: QC.py(377): Changed (1/413) 413 to QC_BAD because salinity below bound 07:52:11 26 Jan 2017 UTC: INFO: QC.py(408): Changed (1/413) 155 to QC_INTERPOLATED because conductivity spikes 07:52:11 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/413) 153:157 to QC_BAD because slow apogee CT flow 07:52:11 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/413) 1:6 to QC_BAD because prior to dive start 07:52:11 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/413) 1:6 153:157 413 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:52:11 26 Jan 2017 UTC: INFO: QC.py(180): Changed (12/413) 1:6 153:157 413 to QC_BAD because changed corrected salin implies changed speed 07:52:11 26 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:52:11 26 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 9 interp_salinity data_points in_between 216 223 % suspect thermal-inertia points 217 218 07:52:11 26 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 9 interp_salinity data_points in_between 333 337 % suspect thermal-inertia points 334 335 07:52:11 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.23 cm/s 07:52:11 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.76 cm/s 07:52:11 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:52:11 26 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (38/413) 134 135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:52:11 26 Jan 2017 UTC: INFO: QC.py(180): Changed (1/413) 156 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:52:11 26 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (38/413) 134 135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 07:52:11 26 Jan 2017 UTC: INFO: QC.py(180): Changed (1/413) 156 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:52:11 26 Jan 2017 UTC: INFO: QC.py(180): Changed (12/413) 1:6 153:157 413 to QC_BAD because changed salinity implies changed optode oxygen 07:52:11 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:52:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 07:52:12 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 9: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.91% reduction 07:52:12 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.9 07:52:12 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:52:12 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:52:12 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:52:12 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 07:52:12 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:52:13 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 62, max_depth_dive_num = 8 07:52:13 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:52:13 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:52:14 26 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:52:14 26 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:52:14 26 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:52:14 26 Jan 2017 UTC /home/sg626/p6260009.log /home/sg626/p6260009.eng /home/sg626/p6260009.asc /home/sg626/p6260009.pro /home/sg626/p6260009.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:52:14 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:52:14 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:52:14 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 07:52:14 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:52:14 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:52:14 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:52:14 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:52:14 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:52:14 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 07:52:14 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:52:14 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:52:14 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:52:14 26 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:52:14 26 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:52:14 26 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:52:14 26 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:52:14 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:52:14 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:52:14 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:52:14 26 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 07:52:14 26 Jan 2017 UTC 09:17:12 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 1547 09:17:12 26 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:19:13 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 1692 09:19:13 26 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:19:13 26 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:19:13 26 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:19:13 26 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:19:13 26 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170125231912 ] 09:19:13 26 Jan 2017 UTC: INFO: Base.py(1333): PID:1703 09:19:13 26 Jan 2017 UTC: INFO: Base.py(1375): Started processing 09:19:13 26 Jan 2017 UTC 09:19:13 26 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:19:13 26 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:19:13 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:19:13 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:19:13 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:10 calls_made:1 call_cycle:0 09:19:13 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:10 calls_made:1 call_cycle:0 2241.0400 -15803.2920 01/26/17 09:15:27 UTC) to sdrifter@soest.hawaii.edu 09:19:13 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:10 calls_made:1 call_cycle:0 09:19:13 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 09:19:13 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:10 calls_made:1 call_cycle:0 09:19:13 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:10 calls_made:1 call_cycle:0 2241.0400 -15803.2920 01/26/17 09:15:27 UTC) to seaglider@km.soest.hawaii.edu 09:19:13 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:10 calls_made:1 call_cycle:0 09:19:13 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:19:13 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:10 calls_made:1 call_cycle:0 09:19:13 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:19:13 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:10 calls_made:1 call_cycle:0 09:19:13 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:19:13 26 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:19:14 26 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:19:14 26 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:19:14 26 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:19:14 26 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:19:14 26 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:19:14 26 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:19:14 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0010lz 09:19:14 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0010lz.x00 09:19:14 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0010lz.r in process_file_group 09:19:14 26 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260010.log 09:19:14 26 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:19:14 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0010dz 09:19:14 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0010dz.x00 09:19:14 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0010dz.x01 09:19:14 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0010dz.x02 09:19:14 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0010dz.r in process_file_group 09:19:15 26 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [10] 09:19:15 26 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [10] 09:19:15 26 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260010) for profiles 09:19:15 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 09:19:15 26 Jan 2017 UTC: INFO: QC.py(365): Changed (3/424) 2 157 158 to QC_PROBABLY_BAD because raw temperature spikes 09:19:15 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/424) 424 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 09:19:15 26 Jan 2017 UTC: INFO: QC.py(180): Changed (3/424) 2 157 158 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 09:19:15 26 Jan 2017 UTC: INFO: QC.py(180): Changed (1/424) 424 to QC_BAD because changed raw cond implies changed raw salinity 09:19:15 26 Jan 2017 UTC: INFO: QC.py(365): Changed (3/424) 2 157 158 to QC_INTERPOLATED because temperature spikes 09:19:15 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/424) 424 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 09:19:15 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/424) 155:159 to QC_BAD because slow apogee CT flow 09:19:15 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/424) 1:6 to QC_BAD because prior to dive start 09:19:15 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/424) 1:6 155:159 424 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:19:15 26 Jan 2017 UTC: INFO: QC.py(180): Changed (12/424) 1:6 155:159 424 to QC_BAD because changed corrected salin implies changed speed 09:19:15 26 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:19:15 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.28 cm/s 09:19:15 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.78 cm/s 09:19:15 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:19:15 26 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (40/424) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:19:15 26 Jan 2017 UTC: INFO: QC.py(180): Changed (1/424) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:19:15 26 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (40/424) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 09:19:15 26 Jan 2017 UTC: INFO: QC.py(180): Changed (1/424) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:19:15 26 Jan 2017 UTC: INFO: QC.py(180): Changed (12/424) 1:6 155:159 424 to QC_BAD because changed salinity implies changed optode oxygen 09:19:15 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:19:15 26 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:19:15 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 09:19:16 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 10: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.83% reduction 09:19:16 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.10 09:19:16 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:19:16 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:19:16 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:19:16 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 09:19:16 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 09:19:18 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 62, max_depth_dive_num = 8 09:19:18 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 09:19:18 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 09:19:18 26 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:19:18 26 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:19:18 26 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:19:18 26 Jan 2017 UTC /home/sg626/p6260010.log /home/sg626/p6260010.eng /home/sg626/p6260010.asc /home/sg626/p6260010.pro /home/sg626/p6260010.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 09:19:18 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:19:18 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:19:18 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 09:19:18 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:19:18 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:19:18 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:19:18 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:19:18 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:19:18 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 09:19:18 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:19:18 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:19:18 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:19:18 26 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:19:18 26 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:19:18 26 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:19:18 26 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:19:18 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:19:18 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:19:18 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:19:18 26 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 09:19:18 26 Jan 2017 UTC 11:11:35 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 6438 11:11:35 26 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 11:13:59 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 6555 11:13:59 26 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:13:59 26 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 11:13:59 26 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 11:13:59 26 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:14:00 26 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170126011359 ] 11:14:00 26 Jan 2017 UTC: INFO: Base.py(1333): PID:6563 11:14:00 26 Jan 2017 UTC: INFO: Base.py(1375): Started processing 11:14:00 26 Jan 2017 UTC 11:14:00 26 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 11:14:00 26 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 11:14:00 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:14:00 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:14:00 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:11 calls_made:1 call_cycle:0 11:14:00 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:11 calls_made:1 call_cycle:0 2240.6650 -15803.3910 01/26/17 11:09:50 UTC) to sdrifter@soest.hawaii.edu 11:14:00 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:11 calls_made:1 call_cycle:0 11:14:00 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 11:14:00 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:11 calls_made:1 call_cycle:0 11:14:00 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:11 calls_made:1 call_cycle:0 2240.6650 -15803.3910 01/26/17 11:09:50 UTC) to seaglider@km.soest.hawaii.edu 11:14:00 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:11 calls_made:1 call_cycle:0 11:14:00 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:14:00 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:11 calls_made:1 call_cycle:0 11:14:00 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:14:00 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:11 calls_made:1 call_cycle:0 11:14:00 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:14:00 26 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:14:01 26 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:14:01 26 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:14:01 26 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 11:14:01 26 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:14:01 26 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:14:01 26 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 11:14:01 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0011lz 11:14:01 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0011lz.x00 11:14:01 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0011lz.x01 11:14:01 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0011lz.r in process_file_group 11:14:01 26 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260011.log 11:14:01 26 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 11:14:01 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0011dz 11:14:01 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0011dz.x00 11:14:01 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0011dz.x01 11:14:01 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0011dz.x02 11:14:01 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0011dz.x03 11:14:01 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0011dz.r in process_file_group 11:14:01 26 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [11] 11:14:01 26 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [11] 11:14:01 26 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260011) for profiles 11:14:01 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 11:14:01 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/465) 464 465 to QC_BAD because CT out of water 11:14:01 26 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.118m) 11:14:01 26 Jan 2017 UTC: INFO: QC.py(365): Changed (2/465) 4 167 to QC_PROBABLY_BAD because raw temperature spikes 11:14:01 26 Jan 2017 UTC: INFO: QC.py(377): Changed (1/465) 465 to QC_BAD because raw salinity below bound 11:14:01 26 Jan 2017 UTC: INFO: QC.py(180): Changed (2/465) 4 167 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 11:14:01 26 Jan 2017 UTC: INFO: QC.py(180): Changed (1/465) 464 to QC_BAD because changed raw cond implies changed raw salinity 11:14:01 26 Jan 2017 UTC: INFO: QC.py(365): Changed (2/465) 4 167 to QC_INTERPOLATED because temperature spikes 11:14:01 26 Jan 2017 UTC: INFO: QC.py(377): Changed (1/465) 465 to QC_BAD because salinity below bound 11:14:01 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/465) 164:169 to QC_BAD because slow apogee CT flow 11:14:01 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/465) 1:6 to QC_BAD because prior to dive start 11:14:01 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/465) 463 to QC_BAD because end of climb 11:14:01 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/465) 1:6 164:169 463:465 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 11:14:01 26 Jan 2017 UTC: INFO: QC.py(180): Changed (15/465) 1:6 164:169 463:465 to QC_BAD because changed corrected salin implies changed speed 11:14:02 26 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 11:14:02 26 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 11 interp_salinity data_points in_between 199 242 % suspect thermal-inertia points 222 223 11:14:02 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.03 cm/s 11:14:02 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.00 cm/s 11:14:02 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 11:14:02 26 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (74/465) 128:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 11:14:02 26 Jan 2017 UTC: INFO: QC.py(180): Changed (1/465) 4 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 11:14:02 26 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (74/465) 128:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 11:14:02 26 Jan 2017 UTC: INFO: QC.py(180): Changed (1/465) 4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 11:14:02 26 Jan 2017 UTC: INFO: QC.py(180): Changed (15/465) 1:6 164:169 463:465 to QC_BAD because changed salinity implies changed optode oxygen 11:14:02 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 11:14:02 26 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 11:14:02 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 11:14:02 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 11: Data set size for profile, binned and kkyy files reduced by 15 points, a 3.23% reduction 11:14:02 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.11 11:14:02 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:14:02 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:14:02 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:14:02 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 11:14:02 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 11:14:04 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 82, max_depth_dive_num = 11 11:14:05 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 11:14:05 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 11:14:05 26 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:14:05 26 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:14:05 26 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:14:05 26 Jan 2017 UTC /home/sg626/p6260011.log /home/sg626/p6260011.eng /home/sg626/p6260011.asc /home/sg626/p6260011.pro /home/sg626/p6260011.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 11:14:05 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:14:05 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:14:05 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 11:14:05 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:14:05 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:14:05 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:14:05 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:14:05 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:14:05 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 11:14:05 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:14:05 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:14:05 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:14:05 26 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 11:14:05 26 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 11:14:05 26 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 11:14:05 26 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 11:14:05 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:14:05 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:14:05 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:14:05 26 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 11:14:05 26 Jan 2017 UTC 13:03:46 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 10273 13:03:46 26 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:05:52 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 10384 13:05:52 26 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:05:52 26 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:05:52 26 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:05:52 26 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:05:52 26 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170126030552 ] 13:05:52 26 Jan 2017 UTC: INFO: Base.py(1333): PID:10392 13:05:52 26 Jan 2017 UTC: INFO: Base.py(1375): Started processing 13:05:52 26 Jan 2017 UTC 13:05:52 26 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:05:52 26 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:05:52 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:05:52 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:05:52 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:12 calls_made:1 call_cycle:0 13:05:52 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:12 calls_made:1 call_cycle:0 2240.5420 -15803.3940 01/26/17 13:01:47 UTC) to sdrifter@soest.hawaii.edu 13:05:53 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:12 calls_made:1 call_cycle:0 13:05:53 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 13:05:53 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:12 calls_made:1 call_cycle:0 13:05:53 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:12 calls_made:1 call_cycle:0 2240.5420 -15803.3940 01/26/17 13:01:47 UTC) to seaglider@km.soest.hawaii.edu 13:05:53 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:12 calls_made:1 call_cycle:0 13:05:53 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:05:53 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:12 calls_made:1 call_cycle:0 13:05:53 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:05:53 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:12 calls_made:1 call_cycle:0 13:05:53 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:05:53 26 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:05:53 26 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:05:53 26 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:05:53 26 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:05:53 26 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:05:53 26 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:05:53 26 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:05:53 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0012lz 13:05:53 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0012lz.x00 13:05:53 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0012lz.x01 13:05:53 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0012lz.r in process_file_group 13:05:53 26 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260012.log 13:05:53 26 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:05:53 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0012dz 13:05:53 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0012dz.x00 13:05:53 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0012dz.x01 13:05:53 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0012dz.x02 13:05:53 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0012dz.x03 13:05:53 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0012dz.r in process_file_group 13:05:54 26 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [12] 13:05:54 26 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [12] 13:05:54 26 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260012) for profiles 13:05:54 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:05:54 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/454) 452 454 to QC_BAD because CT out of water 13:05:54 26 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.118m) 13:05:54 26 Jan 2017 UTC: INFO: QC.py(365): Changed (3/454) 3 162 452 to QC_PROBABLY_BAD because raw temperature spikes 13:05:54 26 Jan 2017 UTC: INFO: QC.py(377): Changed (1/454) 452 to QC_BAD because raw salinity below bound 13:05:54 26 Jan 2017 UTC: INFO: QC.py(408): Changed (1/454) 162 to QC_PROBABLY_BAD because raw conductivity spikes 13:05:54 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/454) 453 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 13:05:54 26 Jan 2017 UTC: INFO: QC.py(180): Changed (2/454) 3 162 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:05:54 26 Jan 2017 UTC: INFO: QC.py(180): Changed (2/454) 453 454 to QC_BAD because changed raw cond implies changed raw salinity 13:05:54 26 Jan 2017 UTC: INFO: QC.py(365): Changed (3/454) 3 162 452 to QC_INTERPOLATED because temperature spikes 13:05:54 26 Jan 2017 UTC: INFO: QC.py(377): Changed (1/454) 452 to QC_BAD because salinity below bound 13:05:54 26 Jan 2017 UTC: INFO: QC.py(408): Changed (1/454) 162 to QC_INTERPOLATED because conductivity spikes 13:05:54 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/454) 453 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 13:05:54 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/454) 159:164 to QC_BAD because slow apogee CT flow 13:05:54 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/454) 1:6 to QC_BAD because prior to dive start 13:05:54 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/454) 1:6 159:164 452:454 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:05:54 26 Jan 2017 UTC: INFO: QC.py(180): Changed (15/454) 1:6 159:164 452:454 to QC_BAD because changed corrected salin implies changed speed 13:05:54 26 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:05:54 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.97 cm/s 13:05:54 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.72 cm/s 13:05:54 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:05:54 26 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (72/454) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:05:54 26 Jan 2017 UTC: INFO: QC.py(180): Changed (2/454) 3 452 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:05:54 26 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (72/454) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:05:54 26 Jan 2017 UTC: INFO: QC.py(180): Changed (2/454) 3 452 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:05:54 26 Jan 2017 UTC: INFO: QC.py(180): Changed (15/454) 1:6 159:164 452:454 to QC_BAD because changed salinity implies changed optode oxygen 13:05:54 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:05:54 26 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:05:54 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:05:55 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 12: Data set size for profile, binned and kkyy files reduced by 15 points, a 3.30% reduction 13:05:55 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.12 13:05:55 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:05:55 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:05:55 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:05:55 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:05:55 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:05:57 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 82, max_depth_dive_num = 11 13:05:58 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:05:58 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:05:58 26 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:05:58 26 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:05:58 26 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:05:58 26 Jan 2017 UTC /home/sg626/p6260012.log /home/sg626/p6260012.eng /home/sg626/p6260012.asc /home/sg626/p6260012.pro /home/sg626/p6260012.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:05:58 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:05:58 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:05:58 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 13:05:58 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:05:58 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:05:58 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:05:58 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:05:58 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:05:58 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 13:05:58 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:05:58 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:05:58 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:05:58 26 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:05:58 26 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:05:58 26 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:05:58 26 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:05:58 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:05:58 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:05:58 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:05:58 26 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 13:05:58 26 Jan 2017 UTC 14:54:06 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 13740 14:54:06 26 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:56:22 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 13845 14:56:22 26 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:56:22 26 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 14:56:22 26 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 14:56:22 26 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:56:22 26 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170126045622 ] 14:56:22 26 Jan 2017 UTC: INFO: Base.py(1333): PID:13853 14:56:22 26 Jan 2017 UTC: INFO: Base.py(1375): Started processing 14:56:22 26 Jan 2017 UTC 14:56:22 26 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 14:56:23 26 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 14:56:23 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:56:23 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:56:23 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:13 calls_made:1 call_cycle:0 14:56:23 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:13 calls_made:1 call_cycle:0 2240.4870 -15803.3080 01/26/17 14:52:20 UTC) to sdrifter@soest.hawaii.edu 14:56:23 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:13 calls_made:1 call_cycle:0 14:56:23 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 14:56:23 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:13 calls_made:1 call_cycle:0 14:56:23 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:13 calls_made:1 call_cycle:0 2240.4870 -15803.3080 01/26/17 14:52:20 UTC) to seaglider@km.soest.hawaii.edu 14:56:23 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:13 calls_made:1 call_cycle:0 14:56:23 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:56:23 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:13 calls_made:1 call_cycle:0 14:56:23 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:56:23 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:13 calls_made:1 call_cycle:0 14:56:23 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:56:23 26 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:56:24 26 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:56:24 26 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:56:24 26 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 14:56:24 26 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:56:24 26 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:56:24 26 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 14:56:24 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0013lz 14:56:24 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0013lz.x00 14:56:24 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0013lz.x01 14:56:24 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0013lz.r in process_file_group 14:56:24 26 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260013.log 14:56:24 26 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 14:56:24 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0013dz 14:56:24 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0013dz.x00 14:56:24 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0013dz.x01 14:56:24 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0013dz.x02 14:56:24 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0013dz.r in process_file_group 14:56:24 26 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [13] 14:56:24 26 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [13] 14:56:24 26 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260013) for profiles 14:56:24 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 14:56:24 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/428) 428 to QC_BAD because CT out of water 14:56:24 26 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.065m) 14:56:24 26 Jan 2017 UTC: INFO: QC.py(365): Changed (1/428) 158 to QC_PROBABLY_BAD because raw temperature spikes 14:56:24 26 Jan 2017 UTC: INFO: QC.py(408): Changed (1/428) 158 to QC_PROBABLY_BAD because raw conductivity spikes 14:56:24 26 Jan 2017 UTC: INFO: QC.py(180): Changed (1/428) 158 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:56:24 26 Jan 2017 UTC: INFO: QC.py(180): Changed (1/428) 428 to QC_BAD because changed raw cond implies changed raw salinity 14:56:24 26 Jan 2017 UTC: INFO: QC.py(365): Changed (1/428) 158 to QC_INTERPOLATED because temperature spikes 14:56:24 26 Jan 2017 UTC: INFO: QC.py(408): Changed (1/428) 158 to QC_INTERPOLATED because conductivity spikes 14:56:24 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/428) 155:160 to QC_BAD because slow apogee CT flow 14:56:24 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/428) 1:6 to QC_BAD because prior to dive start 14:56:24 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/428) 427 to QC_BAD because end of climb 14:56:24 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/428) 1:6 155:160 427 428 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:56:24 26 Jan 2017 UTC: INFO: QC.py(180): Changed (14/428) 1:6 155:160 427 428 to QC_BAD because changed corrected salin implies changed speed 14:56:25 26 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:56:25 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.65 cm/s 14:56:25 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.15 cm/s 14:56:25 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:56:25 26 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (73/428) 118:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:56:25 26 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (73/428) 118:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 14:56:25 26 Jan 2017 UTC: INFO: QC.py(180): Changed (14/428) 1:6 155:160 427 428 to QC_BAD because changed salinity implies changed optode oxygen 14:56:25 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:56:25 26 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:56:25 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 14:56:25 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 13: Data set size for profile, binned and kkyy files reduced by 14 points, a 3.27% reduction 14:56:25 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.13 14:56:25 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:56:25 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:56:25 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:56:25 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 14:56:25 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 14:56:28 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 82, max_depth_dive_num = 11 14:56:28 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 14:56:28 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 14:56:29 26 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:56:29 26 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:56:29 26 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:56:29 26 Jan 2017 UTC /home/sg626/p6260013.log /home/sg626/p6260013.eng /home/sg626/p6260013.asc /home/sg626/p6260013.pro /home/sg626/p6260013.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 14:56:29 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:56:29 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:56:29 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 14:56:29 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:56:29 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:56:29 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:56:29 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:56:29 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:56:29 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 14:56:29 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:56:29 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:56:29 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:56:29 26 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:56:29 26 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:56:29 26 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:56:29 26 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:56:29 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:56:29 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:56:29 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:56:29 26 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 14:56:29 26 Jan 2017 UTC 16:48:45 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 17159 16:48:45 26 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:51:09 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 17361 16:51:09 26 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:51:09 26 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:51:09 26 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:51:09 26 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:51:09 26 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170126065108 ] 16:51:09 26 Jan 2017 UTC: INFO: Base.py(1333): PID:17369 16:51:09 26 Jan 2017 UTC: INFO: Base.py(1375): Started processing 16:51:09 26 Jan 2017 UTC 16:51:09 26 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:51:09 26 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:51:09 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:51:09 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:51:09 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:14 calls_made:1 call_cycle:0 16:51:09 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:14 calls_made:1 call_cycle:0 2241.3570 -15803.2370 01/26/17 16:46:58 UTC) to sdrifter@soest.hawaii.edu 16:51:09 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:14 calls_made:1 call_cycle:0 16:51:09 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 16:51:09 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:14 calls_made:1 call_cycle:0 16:51:09 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:14 calls_made:1 call_cycle:0 2241.3570 -15803.2370 01/26/17 16:46:58 UTC) to seaglider@km.soest.hawaii.edu 16:51:09 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:14 calls_made:1 call_cycle:0 16:51:09 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:51:09 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:14 calls_made:1 call_cycle:0 16:51:09 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:51:09 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:14 calls_made:1 call_cycle:0 16:51:09 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:51:09 26 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:51:10 26 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:51:10 26 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:51:10 26 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:51:10 26 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:51:10 26 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:51:10 26 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:51:10 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0014lz 16:51:10 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0014lz.x00 16:51:10 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0014lz.x01 16:51:10 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0014lz.r in process_file_group 16:51:10 26 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260014.log 16:51:10 26 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:51:10 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0014dz 16:51:10 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0014dz.x00 16:51:10 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0014dz.x01 16:51:10 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0014dz.x02 16:51:10 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0014dz.x03 16:51:10 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0014dz.r in process_file_group 16:51:11 26 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [14] 16:51:11 26 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [14] 16:51:11 26 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260014) for profiles 16:51:11 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:51:11 26 Jan 2017 UTC: INFO: QC.py(365): Changed (1/460) 166 to QC_PROBABLY_BAD because raw temperature spikes 16:51:11 26 Jan 2017 UTC: INFO: QC.py(180): Changed (1/460) 166 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:51:11 26 Jan 2017 UTC: INFO: QC.py(365): Changed (1/460) 166 to QC_INTERPOLATED because temperature spikes 16:51:11 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/460) 163:168 to QC_BAD because slow apogee CT flow 16:51:11 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/460) 1:6 to QC_BAD because prior to dive start 16:51:11 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/460) 1:6 163:168 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:51:11 26 Jan 2017 UTC: INFO: QC.py(180): Changed (12/460) 1:6 163:168 to QC_BAD because changed corrected salin implies changed speed 16:51:11 26 Jan 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 460 16:51:11 26 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:51:11 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.25 cm/s 16:51:11 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.96 cm/s 16:51:11 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:51:11 26 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (74/460) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:51:11 26 Jan 2017 UTC: INFO: QC.py(180): Changed (1/460) 166 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:51:11 26 Jan 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/460) 460 to QC_BAD because slow flow in SBE43 16:51:11 26 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (74/460) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:51:11 26 Jan 2017 UTC: INFO: QC.py(180): Changed (1/460) 166 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:51:11 26 Jan 2017 UTC: INFO: QC.py(180): Changed (12/460) 1:6 163:168 to QC_BAD because changed salinity implies changed optode oxygen 16:51:11 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:51:11 26 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:51:11 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:51:12 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 14: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.61% reduction 16:51:12 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.14 16:51:12 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:51:12 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:51:12 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:51:12 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:51:12 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:51:15 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 82, max_depth_dive_num = 11 16:51:15 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:51:15 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:51:16 26 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:51:16 26 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:51:16 26 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:51:16 26 Jan 2017 UTC /home/sg626/p6260014.log /home/sg626/p6260014.eng /home/sg626/p6260014.asc /home/sg626/p6260014.pro /home/sg626/p6260014.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:51:16 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:51:16 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:51:16 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 16:51:16 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:51:16 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:51:16 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:51:16 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:51:16 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:51:16 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 16:51:16 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:51:16 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:51:16 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:51:16 26 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:51:16 26 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:51:16 26 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:51:16 26 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:51:16 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:51:16 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:51:16 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:51:16 26 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 16:51:16 26 Jan 2017 UTC 18:41:43 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 21617 18:41:43 26 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 18:43:53 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 21724 18:43:53 26 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:43:53 26 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 18:43:53 26 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 18:43:53 26 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:43:53 26 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170126084352 ] 18:43:53 26 Jan 2017 UTC: INFO: Base.py(1333): PID:21732 18:43:53 26 Jan 2017 UTC: INFO: Base.py(1375): Started processing 18:43:53 26 Jan 2017 UTC 18:43:53 26 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 18:43:53 26 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 18:43:53 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:43:53 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:43:53 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:15 calls_made:1 call_cycle:0 18:43:53 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:15 calls_made:1 call_cycle:0 2241.2810 -15802.9560 01/26/17 18:39:59 UTC) to sdrifter@soest.hawaii.edu 18:43:53 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:15 calls_made:1 call_cycle:0 18:43:53 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 18:43:53 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:15 calls_made:1 call_cycle:0 18:43:53 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:15 calls_made:1 call_cycle:0 2241.2810 -15802.9560 01/26/17 18:39:59 UTC) to seaglider@km.soest.hawaii.edu 18:43:53 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:15 calls_made:1 call_cycle:0 18:43:53 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:43:53 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:15 calls_made:1 call_cycle:0 18:43:53 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:43:53 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:15 calls_made:1 call_cycle:0 18:43:53 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:43:53 26 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:43:54 26 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:43:54 26 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:43:54 26 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 18:43:54 26 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:43:54 26 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:43:54 26 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 18:43:54 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0015lz 18:43:54 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0015lz.x00 18:43:54 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0015lz.x01 18:43:54 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0015lz.r in process_file_group 18:43:54 26 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260015.log 18:43:54 26 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 18:43:54 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0015dz 18:43:54 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0015dz.x00 18:43:54 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0015dz.x01 18:43:54 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0015dz.x02 18:43:54 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0015dz.x03 18:43:54 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0015dz.r in process_file_group 18:43:54 26 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [15] 18:43:54 26 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [15] 18:43:54 26 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260015) for profiles 18:43:54 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 18:43:54 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/448) 448 to QC_BAD because CT out of water 18:43:54 26 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.017m) 18:43:54 26 Jan 2017 UTC: INFO: QC.py(365): Changed (3/448) 2 3 167 to QC_PROBABLY_BAD because raw temperature spikes 18:43:54 26 Jan 2017 UTC: INFO: QC.py(180): Changed (3/448) 2 3 167 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 18:43:54 26 Jan 2017 UTC: INFO: QC.py(180): Changed (1/448) 448 to QC_BAD because changed raw cond implies changed raw salinity 18:43:54 26 Jan 2017 UTC: INFO: QC.py(365): Changed (3/448) 2 3 167 to QC_INTERPOLATED because temperature spikes 18:43:54 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/448) 164:168 to QC_BAD because slow apogee CT flow 18:43:55 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/448) 1:6 to QC_BAD because prior to dive start 18:43:55 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/448) 1:6 164:168 448 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 18:43:55 26 Jan 2017 UTC: INFO: QC.py(180): Changed (12/448) 1:6 164:168 448 to QC_BAD because changed corrected salin implies changed speed 18:43:55 26 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 18:43:55 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.57 cm/s 18:43:55 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.18 cm/s 18:43:55 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 18:43:55 26 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (73/448) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 18:43:55 26 Jan 2017 UTC: INFO: QC.py(180): Changed (2/448) 2 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 18:43:55 26 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (73/448) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 18:43:55 26 Jan 2017 UTC: INFO: QC.py(180): Changed (2/448) 2 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 18:43:55 26 Jan 2017 UTC: INFO: QC.py(180): Changed (12/448) 1:6 164:168 448 to QC_BAD because changed salinity implies changed optode oxygen 18:43:55 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 18:43:55 26 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 18:43:55 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 18:43:55 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 15: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.68% reduction 18:43:55 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.15 18:43:55 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:43:55 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:43:55 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:43:55 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 18:43:55 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 18:43:59 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 82, max_depth_dive_num = 11 18:43:59 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 18:43:59 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 18:44:00 26 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:44:00 26 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:44:00 26 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:44:00 26 Jan 2017 UTC /home/sg626/p6260015.log /home/sg626/p6260015.eng /home/sg626/p6260015.asc /home/sg626/p6260015.pro /home/sg626/p6260015.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 18:44:00 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:44:00 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:44:00 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 18:44:00 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:44:00 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:44:00 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:44:00 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:44:00 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:44:00 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 18:44:00 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:44:00 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:44:00 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:44:00 26 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 18:44:00 26 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 18:44:00 26 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 18:44:00 26 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 18:44:00 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:44:00 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:44:00 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:44:00 26 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 18:44:00 26 Jan 2017 UTC 20:36:29 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 25023 20:36:29 26 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:38:44 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 25131 20:38:44 26 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:38:44 26 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:38:44 26 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:38:44 26 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:38:44 26 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170126103843 ] 20:38:44 26 Jan 2017 UTC: INFO: Base.py(1333): PID:25138 20:38:44 26 Jan 2017 UTC: INFO: Base.py(1375): Started processing 20:38:44 26 Jan 2017 UTC 20:38:44 26 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:38:44 26 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:38:44 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:38:44 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:38:44 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:16 calls_made:1 call_cycle:0 20:38:44 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:16 calls_made:1 call_cycle:0 2241.7330 -15802.8500 01/26/17 20:34:39 UTC) to sdrifter@soest.hawaii.edu 20:38:44 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:16 calls_made:1 call_cycle:0 20:38:44 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 20:38:44 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:16 calls_made:1 call_cycle:0 20:38:44 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:16 calls_made:1 call_cycle:0 2241.7330 -15802.8500 01/26/17 20:34:39 UTC) to seaglider@km.soest.hawaii.edu 20:38:44 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:16 calls_made:1 call_cycle:0 20:38:44 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:38:44 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:16 calls_made:1 call_cycle:0 20:38:44 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:38:44 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:16 calls_made:1 call_cycle:0 20:38:44 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:38:44 26 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:38:45 26 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:38:45 26 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:38:45 26 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:38:45 26 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:38:45 26 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:38:45 26 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:38:45 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0016lz 20:38:45 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0016lz.x00 20:38:45 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0016lz.x01 20:38:45 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0016lz.r in process_file_group 20:38:45 26 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260016.log 20:38:45 26 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:38:45 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0016dz 20:38:45 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0016dz.x00 20:38:45 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0016dz.x01 20:38:45 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0016dz.x02 20:38:45 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0016dz.x03 20:38:45 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0016dz.r in process_file_group 20:38:45 26 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [16] 20:38:45 26 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [16] 20:38:46 26 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260016) for profiles 20:38:46 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 20:38:46 26 Jan 2017 UTC: INFO: QC.py(365): Changed (1/472) 174 to QC_PROBABLY_BAD because raw temperature spikes 20:38:46 26 Jan 2017 UTC: INFO: QC.py(180): Changed (1/472) 174 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 20:38:46 26 Jan 2017 UTC: INFO: QC.py(365): Changed (1/472) 174 to QC_INTERPOLATED because temperature spikes 20:38:46 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/472) 172:176 to QC_BAD because slow apogee CT flow 20:38:46 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/472) 1:6 to QC_BAD because prior to dive start 20:38:46 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/472) 471 472 to QC_BAD because end of climb 20:38:46 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/472) 1:6 172:176 471 472 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 20:38:46 26 Jan 2017 UTC: INFO: QC.py(180): Changed (13/472) 1:6 172:176 471 472 to QC_BAD because changed corrected salin implies changed speed 20:38:46 26 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 20:38:46 26 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 16 interp_salinity data_points in_between 229 237 % suspect thermal-inertia points 231 20:38:46 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.66 cm/s 20:38:46 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.75 cm/s 20:38:46 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 20:38:46 26 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (72/472) 135 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 20:38:46 26 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (72/472) 135 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 20:38:46 26 Jan 2017 UTC: INFO: QC.py(180): Changed (13/472) 1:6 172:176 471 472 to QC_BAD because changed salinity implies changed optode oxygen 20:38:46 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 20:38:46 26 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 20:38:46 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 20:38:47 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 16: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.75% reduction 20:38:47 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.16 20:38:47 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:38:47 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:38:47 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:38:47 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 20:38:47 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 20:38:51 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 82, max_depth_dive_num = 11 20:38:51 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 20:38:51 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 20:38:52 26 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:38:52 26 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:38:52 26 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:38:52 26 Jan 2017 UTC /home/sg626/p6260016.log /home/sg626/p6260016.eng /home/sg626/p6260016.asc /home/sg626/p6260016.pro /home/sg626/p6260016.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 20:38:52 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:38:52 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:38:52 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 20:38:52 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:38:52 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:38:52 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:38:52 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:38:52 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:38:52 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 20:38:52 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:38:52 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:38:52 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:38:52 26 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:38:52 26 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:38:52 26 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:38:52 26 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:38:52 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:38:52 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:38:52 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:38:52 26 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 20:38:52 26 Jan 2017 UTC 22:32:46 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 29685 22:32:46 26 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:34:57 26 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 29835 22:34:57 26 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:34:57 26 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:34:57 26 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:34:57 26 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:34:57 26 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170126123456 ] 22:34:57 26 Jan 2017 UTC: INFO: Base.py(1333): PID:29851 22:34:57 26 Jan 2017 UTC: INFO: Base.py(1375): Started processing 22:34:57 26 Jan 2017 UTC 22:34:57 26 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:34:57 26 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:34:57 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:34:57 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:34:57 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:17 calls_made:1 call_cycle:0 22:34:57 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:17 calls_made:1 call_cycle:0 2241.3030 -15802.7260 01/26/17 22:30:52 UTC) to sdrifter@soest.hawaii.edu 22:34:57 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:17 calls_made:1 call_cycle:0 22:34:57 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 22:34:57 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:17 calls_made:1 call_cycle:0 22:34:57 26 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:17 calls_made:1 call_cycle:0 2241.3030 -15802.7260 01/26/17 22:30:52 UTC) to seaglider@km.soest.hawaii.edu 22:34:57 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:17 calls_made:1 call_cycle:0 22:34:57 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:34:57 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:17 calls_made:1 call_cycle:0 22:34:57 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:34:57 26 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:17 calls_made:1 call_cycle:0 22:34:57 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:34:57 26 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:34:58 26 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:34:58 26 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:34:58 26 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:34:58 26 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:34:58 26 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:34:58 26 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:34:58 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0017lz 22:34:58 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0017lz.x00 22:34:58 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0017lz.x01 22:34:58 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0017lz.r in process_file_group 22:34:58 26 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260017.log 22:34:58 26 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 22:34:58 26 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0017dz 22:34:58 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0017dz.x00 22:34:58 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0017dz.x01 22:34:58 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0017dz.x02 22:34:58 26 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0017dz.x03 22:34:58 26 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0017dz.r in process_file_group 22:34:58 26 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [17] 22:34:58 26 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [17] 22:34:58 26 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260017) for profiles 22:34:58 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 22:34:58 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/488) 487 to QC_BAD because CT out of water 22:34:58 26 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.032m) 22:34:59 26 Jan 2017 UTC: INFO: QC.py(365): Changed (2/488) 176 486 to QC_PROBABLY_BAD because raw temperature spikes 22:34:59 26 Jan 2017 UTC: INFO: QC.py(180): Changed (2/488) 176 486 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 22:34:59 26 Jan 2017 UTC: INFO: QC.py(180): Changed (1/488) 487 to QC_BAD because changed raw cond implies changed raw salinity 22:34:59 26 Jan 2017 UTC: INFO: QC.py(365): Changed (2/488) 176 486 to QC_INTERPOLATED because temperature spikes 22:34:59 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/488) 173:177 to QC_BAD because slow apogee CT flow 22:34:59 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/488) 1:6 to QC_BAD because prior to dive start 22:34:59 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/488) 486 488 to QC_BAD because end of climb 22:34:59 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/488) 1:6 173:177 486:488 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:34:59 26 Jan 2017 UTC: INFO: QC.py(180): Changed (14/488) 1:6 173:177 486:488 to QC_BAD because changed corrected salin implies changed speed 22:34:59 26 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:34:59 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.36 cm/s 22:34:59 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.88 cm/s 22:34:59 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:34:59 26 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (71/488) 135 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:34:59 26 Jan 2017 UTC: INFO: QC.py(180): Changed (2/488) 176 486 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 22:34:59 26 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (71/488) 135 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 22:34:59 26 Jan 2017 UTC: INFO: QC.py(180): Changed (2/488) 176 486 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 22:34:59 26 Jan 2017 UTC: INFO: QC.py(180): Changed (14/488) 1:6 173:177 486:488 to QC_BAD because changed salinity implies changed optode oxygen 22:34:59 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:34:59 26 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 22:34:59 26 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 22:34:59 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 17: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.87% reduction 22:34:59 26 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.17 22:34:59 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:34:59 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:34:59 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:35:00 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 22:35:00 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 22:35:04 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 82, max_depth_dive_num = 11 22:35:04 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 22:35:04 26 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 22:35:05 26 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:35:05 26 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:35:05 26 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:35:05 26 Jan 2017 UTC /home/sg626/p6260017.log /home/sg626/p6260017.eng /home/sg626/p6260017.asc /home/sg626/p6260017.pro /home/sg626/p6260017.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 22:35:05 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:35:05 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:35:05 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 22:35:05 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:35:05 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:35:05 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:35:05 26 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:35:05 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:35:05 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 22:35:05 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:35:05 26 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:35:05 26 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:35:05 26 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:35:05 26 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:35:05 26 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:35:05 26 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:35:05 26 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:35:05 26 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:35:05 26 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:35:05 26 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 22:35:05 26 Jan 2017 UTC 00:26:05 27 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 3349 00:26:05 27 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:28:11 27 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 3565 00:28:11 27 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:28:11 27 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:28:11 27 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:28:11 27 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:28:11 27 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170126142810 ] 00:28:11 27 Jan 2017 UTC: INFO: Base.py(1333): PID:3573 00:28:11 27 Jan 2017 UTC: INFO: Base.py(1375): Started processing 00:28:11 27 Jan 2017 UTC 00:28:11 27 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:28:11 27 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:28:11 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:28:11 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:28:11 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:18 calls_made:1 call_cycle:0 00:28:11 27 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:18 calls_made:1 call_cycle:0 2241.8050 -15802.6260 01/27/17 00:24:21 UTC) to sdrifter@soest.hawaii.edu 00:28:11 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:18 calls_made:1 call_cycle:0 00:28:11 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 00:28:11 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:18 calls_made:1 call_cycle:0 00:28:11 27 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:18 calls_made:1 call_cycle:0 2241.8050 -15802.6260 01/27/17 00:24:21 UTC) to seaglider@km.soest.hawaii.edu 00:28:11 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:18 calls_made:1 call_cycle:0 00:28:11 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:28:11 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:18 calls_made:1 call_cycle:0 00:28:11 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:28:11 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:18 calls_made:1 call_cycle:0 00:28:11 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:28:11 27 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:28:12 27 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:28:12 27 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:28:12 27 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:28:12 27 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:28:12 27 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:28:12 27 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:28:12 27 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0018lz 00:28:12 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0018lz.x00 00:28:12 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0018lz.x01 00:28:12 27 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0018lz.r in process_file_group 00:28:12 27 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260018.log 00:28:12 27 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:28:12 27 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0018dz 00:28:12 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0018dz.x00 00:28:12 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0018dz.x01 00:28:12 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0018dz.x02 00:28:12 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0018dz.x03 00:28:12 27 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0018dz.r in process_file_group 00:28:13 27 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [18] 00:28:13 27 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [18] 00:28:13 27 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260018) for profiles 00:28:13 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 00:28:13 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/463) 463 to QC_BAD because CT out of water 00:28:13 27 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.065m) 00:28:13 27 Jan 2017 UTC: INFO: QC.py(365): Changed (5/463) 2 3 171 461 462 to QC_PROBABLY_BAD because raw temperature spikes 00:28:13 27 Jan 2017 UTC: INFO: QC.py(377): Changed (1/463) 463 to QC_BAD because raw salinity below bound 00:28:13 27 Jan 2017 UTC: INFO: QC.py(180): Changed (5/463) 2 3 171 461 462 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:28:13 27 Jan 2017 UTC: INFO: QC.py(365): Changed (5/463) 2 3 171 461 462 to QC_INTERPOLATED because temperature spikes 00:28:13 27 Jan 2017 UTC: INFO: QC.py(377): Changed (1/463) 463 to QC_BAD because salinity below bound 00:28:13 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/463) 169:173 to QC_BAD because slow apogee CT flow 00:28:13 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/463) 1:6 to QC_BAD because prior to dive start 00:28:13 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/463) 1:6 169:173 463 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:28:13 27 Jan 2017 UTC: INFO: QC.py(180): Changed (12/463) 1:6 169:173 463 to QC_BAD because changed corrected salin implies changed speed 00:28:14 27 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:28:14 27 Jan 2017 UTC: INFO: QC.py(180): Changed (2/463) 461 462 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 00:28:14 27 Jan 2017 UTC: INFO: QC.py(180): Changed (2/463) 461 462 to QC_INTERPOLATED because changed corrected temp implies changed speed 00:28:14 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.48 cm/s 00:28:14 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.09 cm/s 00:28:14 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:28:14 27 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (71/463) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:28:14 27 Jan 2017 UTC: INFO: QC.py(180): Changed (5/463) 2 3 171 461 462 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:28:14 27 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (71/463) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 00:28:14 27 Jan 2017 UTC: INFO: QC.py(180): Changed (5/463) 2 3 171 461 462 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:28:14 27 Jan 2017 UTC: INFO: QC.py(180): Changed (12/463) 1:6 169:173 463 to QC_BAD because changed salinity implies changed optode oxygen 00:28:14 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:28:14 27 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:28:14 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 00:28:14 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 18: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.59% reduction 00:28:14 27 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.18 00:28:14 27 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:28:14 27 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:28:14 27 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:28:14 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 00:28:14 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 00:28:19 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 82, max_depth_dive_num = 11 00:28:19 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 00:28:19 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 00:28:20 27 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:28:20 27 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:28:20 27 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:28:20 27 Jan 2017 UTC /home/sg626/p6260018.log /home/sg626/p6260018.eng /home/sg626/p6260018.asc /home/sg626/p6260018.pro /home/sg626/p6260018.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 00:28:20 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:28:20 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:28:20 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 00:28:20 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:28:20 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:28:20 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:28:20 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:28:20 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:28:20 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 00:28:20 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:28:20 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:28:20 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:28:20 27 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:28:20 27 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:28:20 27 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:28:20 27 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:28:20 27 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:28:20 27 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:28:20 27 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:28:20 27 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 00:28:20 27 Jan 2017 UTC 02:17:04 27 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 9438 02:17:04 27 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:19:09 27 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 9968 02:19:09 27 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:19:09 27 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:19:09 27 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:19:09 27 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:19:09 27 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170126161909 ] 02:19:09 27 Jan 2017 UTC: INFO: Base.py(1333): PID:9975 02:19:09 27 Jan 2017 UTC: INFO: Base.py(1375): Started processing 02:19:09 27 Jan 2017 UTC 02:19:09 27 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:19:10 27 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:19:10 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:19:10 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:19:10 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:19 calls_made:1 call_cycle:0 02:19:10 27 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:19 calls_made:1 call_cycle:0 2241.8880 -15802.4230 01/27/17 02:15:20 UTC) to sdrifter@soest.hawaii.edu 02:19:10 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:19 calls_made:1 call_cycle:0 02:19:10 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 02:19:10 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:19 calls_made:1 call_cycle:0 02:19:10 27 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:19 calls_made:1 call_cycle:0 2241.8880 -15802.4230 01/27/17 02:15:20 UTC) to seaglider@km.soest.hawaii.edu 02:19:10 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:19 calls_made:1 call_cycle:0 02:19:10 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:19:10 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:19 calls_made:1 call_cycle:0 02:19:10 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:19:10 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:19 calls_made:1 call_cycle:0 02:19:10 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:19:10 27 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:19:11 27 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:19:11 27 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:19:11 27 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:19:11 27 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:19:11 27 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:19:11 27 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:19:11 27 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0019lz 02:19:11 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0019lz.x00 02:19:11 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0019lz.x01 02:19:11 27 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0019lz.r in process_file_group 02:19:11 27 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260019.log 02:19:11 27 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 02:19:11 27 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0019dz 02:19:11 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0019dz.x00 02:19:11 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0019dz.x01 02:19:11 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0019dz.x02 02:19:11 27 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0019dz.r in process_file_group 02:19:11 27 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [19] 02:19:11 27 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [19] 02:19:11 27 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260019) for profiles 02:19:11 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 02:19:11 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/442) 442 to QC_BAD because CT out of water 02:19:11 27 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.088m) 02:19:11 27 Jan 2017 UTC: INFO: QC.py(365): Changed (3/442) 2 3 179 to QC_PROBABLY_BAD because raw temperature spikes 02:19:11 27 Jan 2017 UTC: INFO: QC.py(377): Changed (1/442) 442 to QC_BAD because raw salinity below bound 02:19:11 27 Jan 2017 UTC: INFO: QC.py(408): Changed (1/442) 179 to QC_PROBABLY_BAD because raw conductivity spikes 02:19:11 27 Jan 2017 UTC: INFO: QC.py(180): Changed (3/442) 2 3 179 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:19:11 27 Jan 2017 UTC: INFO: QC.py(365): Changed (3/442) 2 3 179 to QC_INTERPOLATED because temperature spikes 02:19:11 27 Jan 2017 UTC: INFO: QC.py(377): Changed (1/442) 442 to QC_BAD because salinity below bound 02:19:11 27 Jan 2017 UTC: INFO: QC.py(408): Changed (1/442) 179 to QC_INTERPOLATED because conductivity spikes 02:19:11 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/442) 177:181 to QC_BAD because slow apogee CT flow 02:19:11 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/442) 1:6 to QC_BAD because prior to dive start 02:19:11 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/442) 1:6 177:181 442 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:19:11 27 Jan 2017 UTC: INFO: QC.py(180): Changed (12/442) 1:6 177:181 442 to QC_BAD because changed corrected salin implies changed speed 02:19:11 27 Jan 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 441 02:19:12 27 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:19:12 27 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 19 interp_salinity data_points in_between 236 240 % suspect thermal-inertia points 02:19:12 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.43 cm/s 02:19:12 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.99 cm/s 02:19:12 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:19:12 27 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (72/442) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:19:12 27 Jan 2017 UTC: INFO: QC.py(180): Changed (2/442) 2 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:19:12 27 Jan 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/442) 441 to QC_BAD because slow flow in SBE43 02:19:12 27 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (72/442) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 02:19:12 27 Jan 2017 UTC: INFO: QC.py(180): Changed (2/442) 2 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:19:12 27 Jan 2017 UTC: INFO: QC.py(180): Changed (12/442) 1:6 177:181 442 to QC_BAD because changed salinity implies changed optode oxygen 02:19:12 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:19:12 27 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:19:12 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 02:19:12 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 19: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.71% reduction 02:19:12 27 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.19 02:19:12 27 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:19:12 27 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:19:12 27 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:19:12 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 02:19:12 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 02:19:17 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 82, max_depth_dive_num = 11 02:19:17 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 02:19:17 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 02:19:18 27 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:19:18 27 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:19:18 27 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:19:18 27 Jan 2017 UTC /home/sg626/p6260019.log /home/sg626/p6260019.eng /home/sg626/p6260019.asc /home/sg626/p6260019.pro /home/sg626/p6260019.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 02:19:18 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:19:18 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:19:18 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 02:19:18 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:19:18 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:19:18 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:19:18 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:19:18 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:19:18 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 02:19:18 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:19:18 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:19:18 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:19:18 27 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:19:18 27 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:19:18 27 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:19:18 27 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:19:18 27 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:19:18 27 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:19:18 27 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:19:18 27 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 02:19:18 27 Jan 2017 UTC 04:11:16 27 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 15726 04:11:16 27 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:13:26 27 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 15873 04:13:26 27 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:13:26 27 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:13:26 27 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:13:26 27 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:13:26 27 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170126181326 ] 04:13:26 27 Jan 2017 UTC: INFO: Base.py(1333): PID:15881 04:13:26 27 Jan 2017 UTC: INFO: Base.py(1375): Started processing 04:13:26 27 Jan 2017 UTC 04:13:26 27 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:13:27 27 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:13:27 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:13:27 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:13:27 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:20 calls_made:1 call_cycle:0 04:13:27 27 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:20 calls_made:1 call_cycle:0 2241.7790 -15802.0670 01/27/17 04:09:31 UTC) to sdrifter@soest.hawaii.edu 04:13:27 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:20 calls_made:1 call_cycle:0 04:13:27 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 04:13:27 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:20 calls_made:1 call_cycle:0 04:13:27 27 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:20 calls_made:1 call_cycle:0 2241.7790 -15802.0670 01/27/17 04:09:31 UTC) to seaglider@km.soest.hawaii.edu 04:13:27 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:20 calls_made:1 call_cycle:0 04:13:27 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:13:27 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:20 calls_made:1 call_cycle:0 04:13:27 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:13:27 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:20 calls_made:1 call_cycle:0 04:13:27 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:13:27 27 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:13:28 27 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:13:28 27 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:13:28 27 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:13:28 27 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:13:28 27 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:13:28 27 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:13:28 27 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0020lz 04:13:28 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0020lz.x00 04:13:28 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0020lz.x01 04:13:28 27 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0020lz.r in process_file_group 04:13:28 27 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260020.log 04:13:28 27 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:13:28 27 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0020dz 04:13:28 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0020dz.x00 04:13:28 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0020dz.x01 04:13:28 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0020dz.x02 04:13:28 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0020dz.x03 04:13:28 27 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0020dz.r in process_file_group 04:13:28 27 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [20] 04:13:28 27 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [20] 04:13:28 27 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260020) for profiles 04:13:28 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 04:13:28 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/475) 475 to QC_BAD because CT out of water 04:13:28 27 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.028m) 04:13:28 27 Jan 2017 UTC: INFO: QC.py(365): Changed (2/475) 4 5 to QC_PROBABLY_BAD because raw temperature spikes 04:13:28 27 Jan 2017 UTC: INFO: QC.py(180): Changed (2/475) 4 5 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:13:28 27 Jan 2017 UTC: INFO: QC.py(180): Changed (1/475) 475 to QC_BAD because changed raw cond implies changed raw salinity 04:13:28 27 Jan 2017 UTC: INFO: QC.py(365): Changed (2/475) 4 5 to QC_INTERPOLATED because temperature spikes 04:13:28 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/475) 165:169 to QC_BAD because slow apogee CT flow 04:13:28 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/475) 1:6 to QC_BAD because prior to dive start 04:13:28 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/475) 1:6 165:169 475 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:13:28 27 Jan 2017 UTC: INFO: QC.py(180): Changed (12/475) 1:6 165:169 475 to QC_BAD because changed corrected salin implies changed speed 04:13:29 27 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:13:29 27 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 20 interp_salinity data_points in_between 296 299 % suspect thermal-inertia points 297 04:13:29 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.15 cm/s 04:13:29 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.98 cm/s 04:13:29 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:13:29 27 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (71/475) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:13:29 27 Jan 2017 UTC: INFO: QC.py(180): Changed (2/475) 4 5 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:13:29 27 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (71/475) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 04:13:29 27 Jan 2017 UTC: INFO: QC.py(180): Changed (2/475) 4 5 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:13:29 27 Jan 2017 UTC: INFO: QC.py(180): Changed (12/475) 1:6 165:169 475 to QC_BAD because changed salinity implies changed optode oxygen 04:13:29 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:13:29 27 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:13:29 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 04:13:29 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 20: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.53% reduction 04:13:29 27 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.20 04:13:29 27 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:13:29 27 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:13:29 27 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:13:29 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 04:13:29 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 04:13:35 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 82, max_depth_dive_num = 11 04:13:35 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 04:13:35 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 04:13:36 27 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:13:36 27 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:13:36 27 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:13:36 27 Jan 2017 UTC /home/sg626/p6260020.log /home/sg626/p6260020.eng /home/sg626/p6260020.asc /home/sg626/p6260020.pro /home/sg626/p6260020.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 04:13:36 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:13:36 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:13:36 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 04:13:36 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:13:36 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:13:36 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:13:36 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:13:36 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:13:36 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 04:13:36 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:13:36 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:13:36 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:13:36 27 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:13:36 27 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:13:36 27 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:13:36 27 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:13:36 27 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:13:36 27 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:13:36 27 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:13:36 27 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 04:13:36 27 Jan 2017 UTC 06:17:57 27 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 21758 06:17:57 27 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:20:18 27 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 22071 06:20:18 27 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:20:18 27 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 06:20:18 27 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 06:20:18 27 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:20:18 27 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170126202017 ] 06:20:18 27 Jan 2017 UTC: INFO: Base.py(1333): PID:22079 06:20:18 27 Jan 2017 UTC: INFO: Base.py(1375): Started processing 06:20:18 27 Jan 2017 UTC 06:20:18 27 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 06:20:18 27 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 06:20:18 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:20:18 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:20:18 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:21 calls_made:1 call_cycle:0 06:20:18 27 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:21 calls_made:1 call_cycle:0 2242.4000 -15801.7600 01/27/17 06:16:09 UTC) to sdrifter@soest.hawaii.edu 06:20:18 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:21 calls_made:1 call_cycle:0 06:20:18 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 06:20:18 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:21 calls_made:1 call_cycle:0 06:20:18 27 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:21 calls_made:1 call_cycle:0 2242.4000 -15801.7600 01/27/17 06:16:09 UTC) to seaglider@km.soest.hawaii.edu 06:20:18 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:21 calls_made:1 call_cycle:0 06:20:18 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:20:18 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:21 calls_made:1 call_cycle:0 06:20:18 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:20:18 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:21 calls_made:1 call_cycle:0 06:20:18 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:20:18 27 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:20:19 27 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:20:19 27 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:20:19 27 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 06:20:19 27 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:20:19 27 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:20:19 27 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 06:20:19 27 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0021lz 06:20:19 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0021lz.x00 06:20:19 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0021lz.x01 06:20:19 27 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0021lz.r in process_file_group 06:20:19 27 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260021.log 06:20:19 27 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 06:20:19 27 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0021dz 06:20:19 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0021dz.x00 06:20:19 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0021dz.x01 06:20:19 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0021dz.x02 06:20:19 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0021dz.x03 06:20:19 27 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0021dz.r in process_file_group 06:20:19 27 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [21] 06:20:19 27 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [21] 06:20:19 27 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260021) for profiles 06:20:19 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 06:20:19 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/550) 548 550 to QC_BAD because CT out of water 06:20:19 27 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.057m) 06:20:19 27 Jan 2017 UTC: INFO: QC.py(365): Changed (2/550) 4 5 to QC_PROBABLY_BAD because raw temperature spikes 06:20:19 27 Jan 2017 UTC: INFO: QC.py(408): Changed (2/550) 199 200 to QC_PROBABLY_BAD because raw conductivity spikes 06:20:19 27 Jan 2017 UTC: INFO: QC.py(180): Changed (2/550) 4 5 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 06:20:19 27 Jan 2017 UTC: INFO: QC.py(180): Changed (2/550) 199 200 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 06:20:19 27 Jan 2017 UTC: INFO: QC.py(180): Changed (2/550) 548 550 to QC_BAD because changed raw cond implies changed raw salinity 06:20:19 27 Jan 2017 UTC: INFO: QC.py(365): Changed (2/550) 4 5 to QC_INTERPOLATED because temperature spikes 06:20:19 27 Jan 2017 UTC: INFO: QC.py(408): Changed (2/550) 199 200 to QC_INTERPOLATED because conductivity spikes 06:20:19 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/550) 196:201 to QC_BAD because slow apogee CT flow 06:20:20 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/550) 1:6 to QC_BAD because prior to dive start 06:20:20 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/550) 1:6 196:201 548 550 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 06:20:20 27 Jan 2017 UTC: INFO: QC.py(180): Changed (14/550) 1:6 196:201 548 550 to QC_BAD because changed corrected salin implies changed speed 06:20:20 27 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 06:20:20 27 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 21 interp_salinity data_points in_between 547 548 % suspect thermal-inertia points 547 06:20:20 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.16 cm/s 06:20:20 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.09 cm/s 06:20:20 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 06:20:20 27 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (77/550) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 06:20:20 27 Jan 2017 UTC: INFO: QC.py(180): Changed (2/550) 4 5 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 06:20:20 27 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (77/550) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 06:20:20 27 Jan 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/550) 148 to QC_BAD because bad aa4330 oyxgen 06:20:20 27 Jan 2017 UTC: INFO: QC.py(180): Changed (2/550) 4 5 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 06:20:20 27 Jan 2017 UTC: INFO: QC.py(180): Changed (14/550) 1:6 196:201 548 550 to QC_BAD because changed salinity implies changed optode oxygen 06:20:20 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 06:20:20 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 06:20:21 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 21: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.55% reduction 06:20:21 27 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.21 06:20:21 27 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:20:21 27 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:20:21 27 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:20:21 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 06:20:21 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 06:20:26 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 82, max_depth_dive_num = 11 06:20:26 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 06:20:26 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 06:20:28 27 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:20:28 27 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:20:28 27 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 06:20:28 27 Jan 2017 UTC /home/sg626/p6260021.log /home/sg626/p6260021.eng /home/sg626/p6260021.asc /home/sg626/p6260021.pro /home/sg626/p6260021.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 06:20:28 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:20:28 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:20:28 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 06:20:28 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:20:28 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:20:28 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:20:28 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:20:28 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:20:28 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 06:20:28 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:20:28 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:20:28 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:20:28 27 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 06:20:28 27 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 06:20:28 27 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 06:20:28 27 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 06:20:28 27 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:20:28 27 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:20:28 27 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:20:28 27 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 06:20:28 27 Jan 2017 UTC 06:22:17 27 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 22360 06:22:17 27 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:22:53 27 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 22448 06:22:53 27 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:22:53 27 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 06:22:53 27 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 06:22:53 27 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:22:53 27 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170126202253 ] 06:22:53 27 Jan 2017 UTC: INFO: Base.py(1333): PID:22458 06:22:54 27 Jan 2017 UTC: INFO: Base.py(1375): Started processing 06:22:54 27 Jan 2017 UTC 06:22:54 27 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 06:22:54 27 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 06:22:54 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:22:54 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:22:54 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:21 calls_made:1 call_cycle:1 06:22:54 27 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:21 calls_made:1 call_cycle:1 2242.4110 -15801.7900 01/27/17 06:20:54 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 06:22:54 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:21 calls_made:1 call_cycle:1 06:22:54 27 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:21 calls_made:1 call_cycle:1 2242.4110 -15801.7900 01/27/17 06:20:54 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 06:22:54 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 06:22:54 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:21 calls_made:1 call_cycle:1 06:22:54 27 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:21 calls_made:1 call_cycle:1 2242.4110 -15801.7900 01/27/17 06:20:54 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 06:22:54 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:21 calls_made:1 call_cycle:1 06:22:54 27 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:21 calls_made:1 call_cycle:1 2242.4110 -15801.7900 01/27/17 06:20:54 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 06:22:54 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:22:54 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:21 calls_made:1 call_cycle:1 06:22:54 27 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:21 calls_made:1 call_cycle:1 2242.4110 -15801.7900 01/27/17 06:20:54 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 06:22:54 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:22:54 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:21 calls_made:1 call_cycle:1 06:22:54 27 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:21 calls_made:1 call_cycle:1 2242.4110 -15801.7900 01/27/17 06:20:54 UTC QUIT_COMMAND) to hramm@hawaii.edu 06:22:54 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:22:54 27 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:22:55 27 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:22:55 27 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:22:55 27 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 06:22:55 27 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:22:55 27 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:22:55 27 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 06:22:55 27 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 06:22:55 27 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 06:22:55 27 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 06:22:55 27 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.21.1 06:22:55 27 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:22:55 27 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:22:55 27 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:22:55 27 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:22:55 27 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:22:55 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:22:55 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:22:55 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 06:22:55 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:22:55 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:22:55 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:22:55 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:22:55 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:22:55 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 06:22:55 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:22:55 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:22:55 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:22:55 27 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 06:22:55 27 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 06:22:55 27 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 06:22:55 27 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 06:22:55 27 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:22:55 27 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:22:55 27 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:22:55 27 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 06:22:55 27 Jan 2017 UTC 06:27:30 27 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 22832 06:27:30 27 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:28:05 27 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 22923 06:28:05 27 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:28:05 27 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 06:28:05 27 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 06:28:05 27 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:28:05 27 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170126202804 ] 06:28:05 27 Jan 2017 UTC: INFO: Base.py(1333): PID:22931 06:28:05 27 Jan 2017 UTC: INFO: Base.py(1375): Started processing 06:28:05 27 Jan 2017 UTC 06:28:05 27 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 06:28:05 27 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 06:28:05 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:28:05 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:28:05 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:21 calls_made:1 call_cycle:2 06:28:05 27 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:21 calls_made:1 call_cycle:2 2242.4180 -15801.8070 01/27/17 06:26:08 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 06:28:05 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:21 calls_made:1 call_cycle:2 06:28:05 27 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:21 calls_made:1 call_cycle:2 2242.4180 -15801.8070 01/27/17 06:26:08 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 06:28:05 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 06:28:05 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:21 calls_made:1 call_cycle:2 06:28:05 27 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:21 calls_made:1 call_cycle:2 2242.4180 -15801.8070 01/27/17 06:26:08 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 06:28:06 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:21 calls_made:1 call_cycle:2 06:28:06 27 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:21 calls_made:1 call_cycle:2 2242.4180 -15801.8070 01/27/17 06:26:08 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 06:28:06 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:28:06 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:21 calls_made:1 call_cycle:2 06:28:06 27 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:21 calls_made:1 call_cycle:2 2242.4180 -15801.8070 01/27/17 06:26:08 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 06:28:06 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:28:06 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:21 calls_made:1 call_cycle:2 06:28:06 27 Jan 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:21 calls_made:1 call_cycle:2 2242.4180 -15801.8070 01/27/17 06:26:08 UTC QUIT_COMMAND) to hramm@hawaii.edu 06:28:06 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:28:06 27 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:28:07 27 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:28:07 27 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:28:07 27 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 06:28:07 27 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:28:07 27 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:28:07 27 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 06:28:07 27 Jan 2017 UTC: WARNING: Base.py(1624): No dives to process 06:28:07 27 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [] 06:28:07 27 Jan 2017 UTC: INFO: Base.py(1780): No dives found to profile 06:28:07 27 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.21.2 06:28:07 27 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:28:07 27 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:28:07 27 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:28:07 27 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:28:07 27 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:28:07 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:28:07 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:28:07 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 06:28:07 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:28:07 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:28:07 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:28:07 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:28:07 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:28:07 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 06:28:07 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:28:07 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:28:07 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:28:07 27 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 06:28:07 27 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 06:28:07 27 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 06:28:07 27 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 06:28:07 27 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:28:07 27 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:28:07 27 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:28:07 27 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 06:28:07 27 Jan 2017 UTC 08:50:26 27 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 30301 08:50:26 27 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:52:53 27 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 30411 08:52:53 27 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:52:53 27 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:52:53 27 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:52:53 27 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:52:53 27 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170126225253 ] 08:52:53 27 Jan 2017 UTC: INFO: Base.py(1333): PID:30419 08:52:54 27 Jan 2017 UTC: INFO: Base.py(1375): Started processing 08:52:53 27 Jan 2017 UTC 08:52:54 27 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:52:54 27 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:52:54 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:52:54 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:52:54 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:22 calls_made:1 call_cycle:0 08:52:54 27 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:22 calls_made:1 call_cycle:0 2241.8720 -15801.6300 01/27/17 08:48:32 UTC) to sdrifter@soest.hawaii.edu 08:52:54 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:22 calls_made:1 call_cycle:0 08:52:54 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 08:52:54 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:22 calls_made:1 call_cycle:0 08:52:54 27 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:22 calls_made:1 call_cycle:0 2241.8720 -15801.6300 01/27/17 08:48:32 UTC) to seaglider@km.soest.hawaii.edu 08:52:54 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:22 calls_made:1 call_cycle:0 08:52:54 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:52:54 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:22 calls_made:1 call_cycle:0 08:52:54 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:52:54 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:22 calls_made:1 call_cycle:0 08:52:54 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:52:54 27 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:52:55 27 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:52:55 27 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:52:55 27 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:52:55 27 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:52:55 27 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:52:55 27 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:52:55 27 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0022lz 08:52:55 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0022lz.x00 08:52:55 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0022lz.x01 08:52:55 27 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0022lz.r in process_file_group 08:52:55 27 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260022.log 08:52:55 27 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:52:55 27 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0022dz 08:52:55 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0022dz.x00 08:52:55 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0022dz.x01 08:52:55 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0022dz.x02 08:52:55 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0022dz.x03 08:52:55 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0022dz.x04 08:52:55 27 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0022dz.r in process_file_group 08:52:55 27 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [22] 08:52:55 27 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [22] 08:52:55 27 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260022) for profiles 08:52:55 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:52:56 27 Jan 2017 UTC: INFO: QC.py(365): Changed (3/632) 4 235 236 to QC_PROBABLY_BAD because raw temperature spikes 08:52:56 27 Jan 2017 UTC: INFO: QC.py(180): Changed (3/632) 4 235 236 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:52:56 27 Jan 2017 UTC: INFO: QC.py(365): Changed (3/632) 4 235 236 to QC_INTERPOLATED because temperature spikes 08:52:56 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/632) 233:238 to QC_BAD because slow apogee CT flow 08:52:56 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/632) 1:6 to QC_BAD because prior to dive start 08:52:56 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (3/632) 630:632 to QC_BAD because end of climb 08:52:56 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/632) 1:6 233:238 630:632 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:52:56 27 Jan 2017 UTC: INFO: QC.py(180): Changed (15/632) 1:6 233:238 630:632 to QC_BAD because changed corrected salin implies changed speed 08:52:56 27 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:52:56 27 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 22 interp_salinity data_points in_between 433 441 % suspect thermal-inertia points 439:441 08:52:56 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.39 cm/s 08:52:56 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 2.98 cm/s 08:52:56 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:52:56 27 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (86/632) 178:180 182:185 187:190 192:195 197:200 202:205 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:52:56 27 Jan 2017 UTC: INFO: QC.py(180): Changed (2/632) 4 236 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:52:56 27 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (86/632) 178:180 182:185 187:190 192:195 197:200 202:205 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:52:56 27 Jan 2017 UTC: INFO: QC.py(180): Changed (2/632) 4 236 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:52:56 27 Jan 2017 UTC: INFO: QC.py(180): Changed (15/632) 1:6 233:238 630:632 to QC_BAD because changed salinity implies changed optode oxygen 08:52:56 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:52:56 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 08:52:57 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 22: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.37% reduction 08:52:57 27 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.22 08:52:57 27 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:52:57 27 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:52:57 27 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:52:57 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 08:52:57 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 08:53:03 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 82, max_depth_dive_num = 11 08:53:03 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 08:53:03 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 08:53:04 27 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:53:04 27 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:53:04 27 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:53:04 27 Jan 2017 UTC /home/sg626/p6260022.log /home/sg626/p6260022.eng /home/sg626/p6260022.asc /home/sg626/p6260022.pro /home/sg626/p6260022.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 08:53:04 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:53:04 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:53:04 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 08:53:04 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:53:04 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:53:04 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:53:04 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:53:04 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:53:04 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 08:53:04 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:53:04 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:53:04 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:53:04 27 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:53:04 27 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:53:04 27 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:53:04 27 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:53:04 27 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:53:04 27 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:53:04 27 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:53:04 27 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 08:53:04 27 Jan 2017 UTC 11:12:32 27 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 4622 11:12:32 27 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 11:15:00 27 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 4776 11:15:00 27 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:15:00 27 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 11:15:00 27 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 11:15:00 27 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:15:00 27 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170127011459 ] 11:15:00 27 Jan 2017 UTC: INFO: Base.py(1333): PID:4784 11:15:00 27 Jan 2017 UTC: INFO: Base.py(1375): Started processing 11:15:00 27 Jan 2017 UTC 11:15:00 27 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 11:15:00 27 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 11:15:00 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:15:00 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:15:00 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:23 calls_made:1 call_cycle:0 11:15:00 27 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:23 calls_made:1 call_cycle:0 2242.2680 -15801.4910 01/27/17 11:10:45 UTC) to sdrifter@soest.hawaii.edu 11:15:00 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:23 calls_made:1 call_cycle:0 11:15:00 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 11:15:00 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:23 calls_made:1 call_cycle:0 11:15:00 27 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:23 calls_made:1 call_cycle:0 2242.2680 -15801.4910 01/27/17 11:10:45 UTC) to seaglider@km.soest.hawaii.edu 11:15:00 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:23 calls_made:1 call_cycle:0 11:15:00 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:15:00 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:23 calls_made:1 call_cycle:0 11:15:00 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:15:00 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:23 calls_made:1 call_cycle:0 11:15:00 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:15:00 27 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:15:01 27 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:15:01 27 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:15:01 27 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 11:15:01 27 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:15:01 27 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:15:01 27 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 11:15:01 27 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0023lz 11:15:01 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0023lz.x00 11:15:01 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0023lz.x01 11:15:01 27 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0023lz.r in process_file_group 11:15:01 27 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260023.log 11:15:01 27 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 11:15:01 27 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0023dz 11:15:01 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0023dz.x00 11:15:01 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0023dz.x01 11:15:01 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0023dz.x02 11:15:01 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0023dz.x03 11:15:01 27 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0023dz.r in process_file_group 11:15:02 27 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [23] 11:15:02 27 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [23] 11:15:02 27 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260023) for profiles 11:15:02 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 11:15:02 27 Jan 2017 UTC: INFO: QC.py(365): Changed (3/607) 4 5 228 to QC_PROBABLY_BAD because raw temperature spikes 11:15:02 27 Jan 2017 UTC: INFO: QC.py(408): Changed (1/607) 229 to QC_PROBABLY_BAD because raw conductivity spikes 11:15:02 27 Jan 2017 UTC: INFO: QC.py(180): Changed (3/607) 4 5 228 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 11:15:02 27 Jan 2017 UTC: INFO: QC.py(180): Changed (1/607) 229 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 11:15:02 27 Jan 2017 UTC: INFO: QC.py(365): Changed (3/607) 4 5 228 to QC_INTERPOLATED because temperature spikes 11:15:02 27 Jan 2017 UTC: INFO: QC.py(408): Changed (1/607) 229 to QC_INTERPOLATED because conductivity spikes 11:15:02 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/607) 226:231 to QC_BAD because slow apogee CT flow 11:15:02 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/607) 1:6 to QC_BAD because prior to dive start 11:15:02 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/607) 1:6 226:231 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 11:15:02 27 Jan 2017 UTC: INFO: QC.py(180): Changed (12/607) 1:6 226:231 to QC_BAD because changed corrected salin implies changed speed 11:15:02 27 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 11:15:02 27 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 23 interp_salinity data_points in_between 300 307 % suspect thermal-inertia points 300:305 11:15:02 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.53 cm/s 11:15:02 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.14 cm/s 11:15:02 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 11:15:02 27 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (88/607) 173:175 177:180 182:185 187:190 192:195 197:200 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 11:15:02 27 Jan 2017 UTC: INFO: QC.py(180): Changed (2/607) 4 5 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 11:15:02 27 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (88/607) 173:175 177:180 182:185 187:190 192:195 197:200 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 11:15:02 27 Jan 2017 UTC: INFO: QC.py(180): Changed (2/607) 4 5 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 11:15:02 27 Jan 2017 UTC: INFO: QC.py(180): Changed (12/607) 1:6 226:231 to QC_BAD because changed salinity implies changed optode oxygen 11:15:02 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 11:15:02 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 11:15:03 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 23: Data set size for profile, binned and kkyy files reduced by 12 points, a 1.98% reduction 11:15:03 27 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.23 11:15:03 27 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:15:03 27 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:15:03 27 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:15:03 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 11:15:03 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 11:15:09 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 82, max_depth_dive_num = 11 11:15:09 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 11:15:09 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 11:15:11 27 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:15:11 27 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:15:11 27 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:15:11 27 Jan 2017 UTC /home/sg626/p6260023.log /home/sg626/p6260023.eng /home/sg626/p6260023.asc /home/sg626/p6260023.pro /home/sg626/p6260023.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 11:15:11 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:15:11 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:15:11 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 11:15:11 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:15:11 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:15:11 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:15:11 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:15:11 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:15:11 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 11:15:11 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:15:11 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:15:11 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:15:11 27 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 11:15:11 27 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 11:15:11 27 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 11:15:11 27 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 11:15:11 27 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:15:11 27 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:15:11 27 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:15:11 27 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 11:15:11 27 Jan 2017 UTC 13:45:24 27 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 11183 13:45:24 27 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:47:44 27 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 11296 13:47:44 27 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:47:44 27 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:47:44 27 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:47:44 27 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:47:44 27 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170127034743 ] 13:47:44 27 Jan 2017 UTC: INFO: Base.py(1333): PID:11303 13:47:44 27 Jan 2017 UTC: INFO: Base.py(1375): Started processing 13:47:44 27 Jan 2017 UTC 13:47:44 27 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:47:44 27 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:47:44 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:47:44 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:47:44 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:24 calls_made:1 call_cycle:0 13:47:44 27 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:24 calls_made:1 call_cycle:0 2242.0830 -15801.1600 01/27/17 13:43:30 UTC) to sdrifter@soest.hawaii.edu 13:47:44 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:24 calls_made:1 call_cycle:0 13:47:44 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 13:47:44 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:24 calls_made:1 call_cycle:0 13:47:44 27 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:24 calls_made:1 call_cycle:0 2242.0830 -15801.1600 01/27/17 13:43:30 UTC) to seaglider@km.soest.hawaii.edu 13:47:44 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:24 calls_made:1 call_cycle:0 13:47:44 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:47:44 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:24 calls_made:1 call_cycle:0 13:47:44 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:47:44 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:24 calls_made:1 call_cycle:0 13:47:44 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:47:44 27 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:47:45 27 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:47:45 27 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:47:45 27 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:47:45 27 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:47:45 27 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:47:45 27 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:47:45 27 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0024lz 13:47:45 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0024lz.x00 13:47:45 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0024lz.x01 13:47:45 27 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0024lz.r in process_file_group 13:47:45 27 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260024.log 13:47:45 27 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:47:45 27 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0024dz 13:47:45 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0024dz.x00 13:47:45 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0024dz.x01 13:47:45 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0024dz.x02 13:47:45 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0024dz.x03 13:47:45 27 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0024dz.r in process_file_group 13:47:46 27 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [24] 13:47:46 27 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [24] 13:47:46 27 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260024) for profiles 13:47:46 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:47:46 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/555) 553 to QC_BAD because CT out of water 13:47:46 27 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.063m) 13:47:46 27 Jan 2017 UTC: INFO: QC.py(365): Changed (6/555) 2 3 221 223 224 554 to QC_PROBABLY_BAD because raw temperature spikes 13:47:46 27 Jan 2017 UTC: INFO: QC.py(408): Changed (1/555) 224 to QC_PROBABLY_BAD because raw conductivity spikes 13:47:46 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/555) 555 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 13:47:46 27 Jan 2017 UTC: INFO: QC.py(180): Changed (6/555) 2 3 221 223 224 554 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:47:46 27 Jan 2017 UTC: INFO: QC.py(180): Changed (2/555) 553 555 to QC_BAD because changed raw cond implies changed raw salinity 13:47:46 27 Jan 2017 UTC: INFO: QC.py(365): Changed (6/555) 2 3 221 223 224 554 to QC_INTERPOLATED because temperature spikes 13:47:46 27 Jan 2017 UTC: INFO: QC.py(408): Changed (1/555) 224 to QC_INTERPOLATED because conductivity spikes 13:47:46 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/555) 555 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 13:47:46 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/555) 220:225 to QC_BAD because slow apogee CT flow 13:47:46 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/555) 1:6 to QC_BAD because prior to dive start 13:47:46 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/555) 554 to QC_BAD because end of climb 13:47:46 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/555) 1:6 220:225 553:555 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:47:46 27 Jan 2017 UTC: INFO: QC.py(180): Changed (15/555) 1:6 220:225 553:555 to QC_BAD because changed corrected salin implies changed speed 13:47:46 27 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:47:46 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.14 cm/s 13:47:46 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.22 cm/s 13:47:46 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:47:46 27 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (113/555) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:47:46 27 Jan 2017 UTC: INFO: QC.py(180): Changed (4/555) 2 3 221 554 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:47:46 27 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (113/555) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:47:46 27 Jan 2017 UTC: INFO: QC.py(180): Changed (4/555) 2 3 221 554 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:47:46 27 Jan 2017 UTC: INFO: QC.py(180): Changed (15/555) 1:6 220:225 553:555 to QC_BAD because changed salinity implies changed optode oxygen 13:47:46 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:47:46 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:47:47 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 24: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.70% reduction 13:47:47 27 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.24 13:47:47 27 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:47:47 27 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:47:47 27 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:47:47 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:47:47 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:47:54 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 101, max_depth_dive_num = 24 13:47:54 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:47:54 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:47:55 27 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:47:55 27 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:47:55 27 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:47:55 27 Jan 2017 UTC /home/sg626/p6260024.log /home/sg626/p6260024.eng /home/sg626/p6260024.asc /home/sg626/p6260024.pro /home/sg626/p6260024.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:47:55 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:47:55 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:47:55 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 13:47:55 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:47:55 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:47:55 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:47:55 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:47:55 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:47:55 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 13:47:55 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:47:55 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:47:55 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:47:55 27 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:47:55 27 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:47:55 27 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:47:55 27 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:47:55 27 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:47:55 27 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:47:55 27 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:47:55 27 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 13:47:55 27 Jan 2017 UTC 16:19:08 27 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 16040 16:19:08 27 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:21:32 27 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 16308 16:21:32 27 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:21:32 27 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:21:32 27 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:21:32 27 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:21:32 27 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170127062132 ] 16:21:32 27 Jan 2017 UTC: INFO: Base.py(1333): PID:16316 16:21:32 27 Jan 2017 UTC: INFO: Base.py(1375): Started processing 16:21:32 27 Jan 2017 UTC 16:21:32 27 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:21:33 27 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:21:33 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:21:33 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:21:33 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:25 calls_made:2 call_cycle:0 16:21:33 27 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:25 calls_made:2 call_cycle:0 2243.1160 -15800.7330 01/27/17 16:15:39 UTC) to sdrifter@soest.hawaii.edu 16:21:33 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:25 calls_made:2 call_cycle:0 16:21:33 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 16:21:33 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:25 calls_made:2 call_cycle:0 16:21:33 27 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:25 calls_made:2 call_cycle:0 2243.1160 -15800.7330 01/27/17 16:15:39 UTC) to seaglider@km.soest.hawaii.edu 16:21:33 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:25 calls_made:2 call_cycle:0 16:21:33 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:21:33 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:25 calls_made:2 call_cycle:0 16:21:33 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:21:33 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:25 calls_made:2 call_cycle:0 16:21:33 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:21:33 27 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:21:34 27 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:21:34 27 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:21:34 27 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:21:34 27 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:21:34 27 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:21:34 27 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:21:34 27 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0025lz 16:21:34 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0025lz.x00 16:21:34 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0025lz.x01 16:21:34 27 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0025lz.r in process_file_group 16:21:34 27 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260025.log 16:21:34 27 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:21:34 27 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0025dz 16:21:34 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0025dz.x00 16:21:34 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0025dz.x01 16:21:34 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0025dz.x02 16:21:34 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0025dz.x03 16:21:34 27 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0025dz.r in process_file_group 16:21:34 27 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [25] 16:21:34 27 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [25] 16:21:34 27 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260025) for profiles 16:21:34 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:21:34 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/557) 557 to QC_BAD because CT out of water 16:21:34 27 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.067m) 16:21:34 27 Jan 2017 UTC: INFO: QC.py(365): Changed (2/557) 2 212 to QC_PROBABLY_BAD because raw temperature spikes 16:21:34 27 Jan 2017 UTC: INFO: QC.py(377): Changed (2/557) 556 557 to QC_BAD because raw salinity below bound 16:21:34 27 Jan 2017 UTC: INFO: QC.py(388): Changed (1/557) 556 to QC_BAD because bad raw salinity indicates raw conductivity issues 16:21:34 27 Jan 2017 UTC: INFO: QC.py(408): Changed (1/557) 212 to QC_PROBABLY_BAD because raw conductivity spikes 16:21:34 27 Jan 2017 UTC: INFO: QC.py(180): Changed (2/557) 2 212 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:21:34 27 Jan 2017 UTC: INFO: QC.py(365): Changed (2/557) 2 212 to QC_INTERPOLATED because temperature spikes 16:21:35 27 Jan 2017 UTC: INFO: QC.py(377): Changed (2/557) 556 557 to QC_BAD because salinity below bound 16:21:35 27 Jan 2017 UTC: INFO: QC.py(388): Changed (1/557) 556 to QC_BAD because bad salinity indicates conductivity issues 16:21:35 27 Jan 2017 UTC: INFO: QC.py(408): Changed (1/557) 212 to QC_INTERPOLATED because conductivity spikes 16:21:35 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/557) 209:214 to QC_BAD because slow apogee CT flow 16:21:35 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/557) 1:6 to QC_BAD because prior to dive start 16:21:35 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/557) 555 to QC_BAD because end of climb 16:21:35 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/557) 1:6 209:214 555:557 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:21:35 27 Jan 2017 UTC: INFO: QC.py(180): Changed (15/557) 1:6 209:214 555:557 to QC_BAD because changed corrected salin implies changed speed 16:21:35 27 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:21:35 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.11 cm/s 16:21:35 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.30 cm/s 16:21:35 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:21:35 27 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (112/557) 139 140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:21:35 27 Jan 2017 UTC: INFO: QC.py(180): Changed (1/557) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:21:35 27 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (112/557) 139 140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:21:35 27 Jan 2017 UTC: INFO: QC.py(180): Changed (1/557) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:21:35 27 Jan 2017 UTC: INFO: QC.py(180): Changed (15/557) 1:6 209:214 555:557 to QC_BAD because changed salinity implies changed optode oxygen 16:21:35 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:21:35 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:21:36 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 25: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.69% reduction 16:21:36 27 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.25 16:21:36 27 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:21:36 27 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:21:36 27 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:21:36 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:21:36 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:21:43 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 16:21:43 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:21:43 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:21:45 27 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:21:45 27 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:21:45 27 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:21:45 27 Jan 2017 UTC /home/sg626/p6260025.log /home/sg626/p6260025.eng /home/sg626/p6260025.asc /home/sg626/p6260025.pro /home/sg626/p6260025.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:21:45 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:21:45 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:21:45 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 16:21:45 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:21:45 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:21:45 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:21:45 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:21:45 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:21:45 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 16:21:45 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:21:45 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:21:45 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:21:45 27 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:21:45 27 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:21:45 27 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:21:45 27 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:21:45 27 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:21:45 27 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:21:45 27 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:21:45 27 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 16:21:45 27 Jan 2017 UTC 18:49:19 27 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 21986 18:49:19 27 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 18:51:48 27 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 22283 18:51:48 27 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:51:48 27 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 18:51:48 27 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 18:51:48 27 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:51:48 27 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170127085147 ] 18:51:48 27 Jan 2017 UTC: INFO: Base.py(1333): PID:22291 18:51:48 27 Jan 2017 UTC: INFO: Base.py(1375): Started processing 18:51:48 27 Jan 2017 UTC 18:51:48 27 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 18:51:48 27 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 18:51:48 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:51:48 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:51:48 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:26 calls_made:1 call_cycle:0 18:51:48 27 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:26 calls_made:1 call_cycle:0 2243.1150 -15800.0600 01/27/17 18:47:31 UTC) to sdrifter@soest.hawaii.edu 18:51:48 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:26 calls_made:1 call_cycle:0 18:51:48 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 18:51:48 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:26 calls_made:1 call_cycle:0 18:51:48 27 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:26 calls_made:1 call_cycle:0 2243.1150 -15800.0600 01/27/17 18:47:31 UTC) to seaglider@km.soest.hawaii.edu 18:51:48 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:26 calls_made:1 call_cycle:0 18:51:48 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:51:48 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:26 calls_made:1 call_cycle:0 18:51:48 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:51:48 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:26 calls_made:1 call_cycle:0 18:51:48 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:51:48 27 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:51:49 27 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:51:49 27 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:51:49 27 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 18:51:49 27 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:51:49 27 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:51:49 27 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 18:51:49 27 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0026lz 18:51:49 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0026lz.x00 18:51:49 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0026lz.x01 18:51:49 27 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0026lz.r in process_file_group 18:51:49 27 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260026.log 18:51:49 27 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 18:51:49 27 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0026dz 18:51:49 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0026dz.x00 18:51:49 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0026dz.x01 18:51:49 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0026dz.x02 18:51:49 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0026dz.x03 18:51:49 27 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0026dz.r in process_file_group 18:51:49 27 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [26] 18:51:49 27 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [26] 18:51:50 27 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260026) for profiles 18:51:50 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 18:51:50 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/565) 565 to QC_BAD because CT out of water 18:51:50 27 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.014m) 18:51:50 27 Jan 2017 UTC: INFO: QC.py(365): Changed (3/565) 208 210 564 to QC_PROBABLY_BAD because raw temperature spikes 18:51:50 27 Jan 2017 UTC: INFO: QC.py(408): Changed (2/565) 3 209 to QC_PROBABLY_BAD because raw conductivity spikes 18:51:50 27 Jan 2017 UTC: INFO: QC.py(180): Changed (3/565) 208 210 564 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 18:51:50 27 Jan 2017 UTC: INFO: QC.py(180): Changed (2/565) 3 209 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 18:51:50 27 Jan 2017 UTC: INFO: QC.py(180): Changed (1/565) 565 to QC_BAD because changed raw cond implies changed raw salinity 18:51:50 27 Jan 2017 UTC: INFO: QC.py(365): Changed (3/565) 208 210 564 to QC_INTERPOLATED because temperature spikes 18:51:50 27 Jan 2017 UTC: INFO: QC.py(408): Changed (2/565) 3 209 to QC_INTERPOLATED because conductivity spikes 18:51:50 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/565) 206:211 to QC_BAD because slow apogee CT flow 18:51:50 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/565) 1:6 to QC_BAD because prior to dive start 18:51:50 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/565) 1:6 206:211 565 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 18:51:50 27 Jan 2017 UTC: INFO: QC.py(180): Changed (13/565) 1:6 206:211 565 to QC_BAD because changed corrected salin implies changed speed 18:51:50 27 Jan 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 2 stalled points 563 564 18:51:50 27 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 18:51:50 27 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 26 interp_salinity data_points in_between 407 412 % suspect thermal-inertia points 18:51:50 27 Jan 2017 UTC: INFO: QC.py(180): Changed (1/565) 564 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 18:51:50 27 Jan 2017 UTC: INFO: QC.py(180): Changed (1/565) 564 to QC_INTERPOLATED because changed corrected temp implies changed speed 18:51:50 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.74 cm/s 18:51:50 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.22 cm/s 18:51:50 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 18:51:50 27 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (109/565) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 18:51:50 27 Jan 2017 UTC: INFO: QC.py(180): Changed (1/565) 564 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 18:51:50 27 Jan 2017 UTC: INFO: sbe43_ext.py(293): Changed (2/565) 563 564 to QC_BAD because slow flow in SBE43 18:51:50 27 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (109/565) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 18:51:50 27 Jan 2017 UTC: INFO: QC.py(180): Changed (1/565) 564 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 18:51:50 27 Jan 2017 UTC: INFO: QC.py(180): Changed (13/565) 1:6 206:211 565 to QC_BAD because changed salinity implies changed optode oxygen 18:51:50 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 18:51:50 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 18:51:51 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 26: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.30% reduction 18:51:51 27 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.26 18:51:51 27 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:51:51 27 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:51:51 27 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:51:51 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 18:51:51 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 18:51:58 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 18:51:59 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 18:51:59 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 18:52:00 27 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:52:00 27 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:52:00 27 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:52:00 27 Jan 2017 UTC /home/sg626/p6260026.log /home/sg626/p6260026.eng /home/sg626/p6260026.asc /home/sg626/p6260026.pro /home/sg626/p6260026.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 18:52:00 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:52:00 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:52:00 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 18:52:00 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:52:00 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:52:00 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:52:00 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:52:00 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:52:00 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 18:52:00 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:52:00 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:52:00 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:52:00 27 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 18:52:00 27 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 18:52:00 27 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 18:52:00 27 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 18:52:00 27 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:52:00 27 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:52:00 27 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:52:00 27 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 18:52:00 27 Jan 2017 UTC 21:26:03 27 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 27995 21:26:03 27 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:28:25 27 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 28107 21:28:25 27 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:28:25 27 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:28:25 27 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:28:25 27 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:28:25 27 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170127112824 ] 21:28:25 27 Jan 2017 UTC: INFO: Base.py(1333): PID:28118 21:28:25 27 Jan 2017 UTC: INFO: Base.py(1375): Started processing 21:28:25 27 Jan 2017 UTC 21:28:25 27 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:28:25 27 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:28:25 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:28:25 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:28:25 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:27 calls_made:1 call_cycle:0 21:28:25 27 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:27 calls_made:1 call_cycle:0 2243.9480 -15759.7860 01/27/17 21:24:09 UTC) to sdrifter@soest.hawaii.edu 21:28:25 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:27 calls_made:1 call_cycle:0 21:28:25 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 21:28:25 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:27 calls_made:1 call_cycle:0 21:28:25 27 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:27 calls_made:1 call_cycle:0 2243.9480 -15759.7860 01/27/17 21:24:09 UTC) to seaglider@km.soest.hawaii.edu 21:28:25 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:27 calls_made:1 call_cycle:0 21:28:25 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:28:25 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:27 calls_made:1 call_cycle:0 21:28:25 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:28:25 27 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:27 calls_made:1 call_cycle:0 21:28:25 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:28:25 27 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:28:26 27 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:28:26 27 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:28:26 27 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:28:26 27 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:28:26 27 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:28:26 27 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:28:26 27 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0027lz 21:28:26 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0027lz.x00 21:28:26 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0027lz.x01 21:28:26 27 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0027lz.r in process_file_group 21:28:26 27 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260027.log 21:28:26 27 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:28:26 27 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0027dz 21:28:26 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0027dz.x00 21:28:26 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0027dz.x01 21:28:26 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0027dz.x02 21:28:26 27 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0027dz.x03 21:28:26 27 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0027dz.r in process_file_group 21:28:27 27 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [27] 21:28:27 27 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [27] 21:28:27 27 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260027) for profiles 21:28:27 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:28:27 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/605) 605 to QC_BAD because CT out of water 21:28:27 27 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.063m) 21:28:27 27 Jan 2017 UTC: INFO: QC.py(365): Changed (2/605) 6 230 to QC_PROBABLY_BAD because raw temperature spikes 21:28:27 27 Jan 2017 UTC: INFO: QC.py(377): Changed (2/605) 604 605 to QC_BAD because raw salinity below bound 21:28:27 27 Jan 2017 UTC: INFO: QC.py(388): Changed (1/605) 604 to QC_BAD because bad raw salinity indicates raw conductivity issues 21:28:27 27 Jan 2017 UTC: INFO: QC.py(180): Changed (2/605) 6 230 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:28:27 27 Jan 2017 UTC: INFO: QC.py(365): Changed (2/605) 6 230 to QC_INTERPOLATED because temperature spikes 21:28:27 27 Jan 2017 UTC: INFO: QC.py(377): Changed (2/605) 604 605 to QC_BAD because salinity below bound 21:28:27 27 Jan 2017 UTC: INFO: QC.py(388): Changed (1/605) 604 to QC_BAD because bad salinity indicates conductivity issues 21:28:27 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/605) 227:232 to QC_BAD because slow apogee CT flow 21:28:27 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/605) 1:6 to QC_BAD because prior to dive start 21:28:27 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/605) 1:6 227:232 604 605 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:28:27 27 Jan 2017 UTC: INFO: QC.py(180): Changed (14/605) 1:6 227:232 604 605 to QC_BAD because changed corrected salin implies changed speed 21:28:27 27 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:28:27 27 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 27 interp_salinity data_points in_between 323 329 % suspect thermal-inertia points 325 21:28:27 27 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 27 interp_salinity data_points in_between 450 458 % suspect thermal-inertia points 452 21:28:27 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.72 cm/s 21:28:27 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.09 cm/s 21:28:27 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:28:27 27 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (110/605) 155 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:28:27 27 Jan 2017 UTC: INFO: QC.py(180): Changed (1/605) 6 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:28:27 27 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (110/605) 155 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:28:27 27 Jan 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/605) 603 to QC_BAD because bad aa4330 oyxgen 21:28:27 27 Jan 2017 UTC: INFO: QC.py(180): Changed (1/605) 6 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:28:27 27 Jan 2017 UTC: INFO: QC.py(180): Changed (14/605) 1:6 227:232 604 605 to QC_BAD because changed salinity implies changed optode oxygen 21:28:27 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:28:27 27 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:28:28 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 27: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.31% reduction 21:28:28 27 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.27 21:28:28 27 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:28:28 27 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:28:28 27 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:28:28 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:28:28 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 21:28:36 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 21:28:36 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 21:28:36 27 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 21:28:38 27 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:28:38 27 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:28:38 27 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:28:38 27 Jan 2017 UTC /home/sg626/p6260027.log /home/sg626/p6260027.eng /home/sg626/p6260027.asc /home/sg626/p6260027.pro /home/sg626/p6260027.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 21:28:38 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:28:38 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:28:38 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 21:28:38 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:28:38 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:28:38 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:28:38 27 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:28:38 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:28:38 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 21:28:38 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:28:38 27 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:28:38 27 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:28:38 27 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:28:38 27 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:28:38 27 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:28:38 27 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:28:38 27 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:28:38 27 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:28:38 27 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:28:38 27 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 21:28:38 27 Jan 2017 UTC 00:02:16 28 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 1002 00:02:16 28 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:04:53 28 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 1130 00:04:53 28 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:04:53 28 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:04:53 28 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:04:53 28 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:04:53 28 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170127140452 ] 00:04:53 28 Jan 2017 UTC: INFO: Base.py(1333): PID:1139 00:04:53 28 Jan 2017 UTC: INFO: Base.py(1375): Started processing 00:04:53 28 Jan 2017 UTC 00:04:53 28 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:04:53 28 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:04:53 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:04:53 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:04:53 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:28 calls_made:1 call_cycle:0 00:04:53 28 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:28 calls_made:1 call_cycle:0 2244.4450 -15759.4780 01/28/17 00:00:25 UTC) to sdrifter@soest.hawaii.edu 00:04:53 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:28 calls_made:1 call_cycle:0 00:04:53 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 00:04:53 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:28 calls_made:1 call_cycle:0 00:04:53 28 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:28 calls_made:1 call_cycle:0 2244.4450 -15759.4780 01/28/17 00:00:25 UTC) to seaglider@km.soest.hawaii.edu 00:04:53 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:28 calls_made:1 call_cycle:0 00:04:53 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:04:53 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:28 calls_made:1 call_cycle:0 00:04:53 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:04:53 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:28 calls_made:1 call_cycle:0 00:04:53 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:04:53 28 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:04:54 28 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:04:54 28 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:04:54 28 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:04:54 28 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:04:54 28 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:04:54 28 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:04:54 28 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0028lz 00:04:54 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0028lz.x00 00:04:54 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0028lz.x01 00:04:54 28 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0028lz.r in process_file_group 00:04:54 28 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260028.log 00:04:54 28 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:04:54 28 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0028dz 00:04:54 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0028dz.x00 00:04:54 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0028dz.x01 00:04:54 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0028dz.x02 00:04:54 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0028dz.x03 00:04:54 28 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0028dz.r in process_file_group 00:04:54 28 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [28] 00:04:54 28 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [28] 00:04:55 28 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260028) for profiles 00:04:55 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 00:04:55 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/569) 568 569 to QC_BAD because CT out of water 00:04:55 28 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.069m) 00:04:55 28 Jan 2017 UTC: INFO: QC.py(365): Changed (5/569) 2:4 229 567 to QC_PROBABLY_BAD because raw temperature spikes 00:04:55 28 Jan 2017 UTC: INFO: QC.py(377): Changed (1/569) 569 to QC_BAD because raw salinity below bound 00:04:55 28 Jan 2017 UTC: INFO: QC.py(180): Changed (5/569) 2:4 229 567 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:04:55 28 Jan 2017 UTC: INFO: QC.py(180): Changed (1/569) 568 to QC_BAD because changed raw cond implies changed raw salinity 00:04:55 28 Jan 2017 UTC: INFO: QC.py(365): Changed (5/569) 2:4 229 567 to QC_INTERPOLATED because temperature spikes 00:04:55 28 Jan 2017 UTC: INFO: QC.py(377): Changed (1/569) 569 to QC_BAD because salinity below bound 00:04:55 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/569) 226:231 to QC_BAD because slow apogee CT flow 00:04:55 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/569) 1:6 to QC_BAD because prior to dive start 00:04:55 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/569) 567 to QC_BAD because end of climb 00:04:55 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/569) 1:6 226:231 567:569 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:04:55 28 Jan 2017 UTC: INFO: QC.py(180): Changed (15/569) 1:6 226:231 567:569 to QC_BAD because changed corrected salin implies changed speed 00:04:55 28 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:04:55 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.08 cm/s 00:04:55 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.21 cm/s 00:04:55 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:04:55 28 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (116/569) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:04:55 28 Jan 2017 UTC: INFO: QC.py(180): Changed (4/569) 2:4 567 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:04:55 28 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (116/569) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 00:04:55 28 Jan 2017 UTC: INFO: QC.py(180): Changed (4/569) 2:4 567 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:04:55 28 Jan 2017 UTC: INFO: QC.py(180): Changed (15/569) 1:6 226:231 567:569 to QC_BAD because changed salinity implies changed optode oxygen 00:04:55 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:04:55 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 00:04:56 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 28: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.64% reduction 00:04:56 28 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.28 00:04:56 28 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:04:56 28 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:04:56 28 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:04:56 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 00:04:56 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 00:05:04 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 00:05:04 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 00:05:04 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 00:05:06 28 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:05:06 28 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:05:06 28 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:05:06 28 Jan 2017 UTC /home/sg626/p6260028.log /home/sg626/p6260028.eng /home/sg626/p6260028.asc /home/sg626/p6260028.pro /home/sg626/p6260028.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 00:05:06 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:05:06 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:05:06 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 00:05:06 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:05:06 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:05:06 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:05:06 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:05:06 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:05:06 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 00:05:06 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:05:06 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:05:06 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:05:06 28 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:05:06 28 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:05:06 28 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:05:06 28 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:05:06 28 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:05:06 28 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:05:06 28 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:05:06 28 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 00:05:06 28 Jan 2017 UTC 02:33:15 28 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 7315 02:33:15 28 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 02:35:37 28 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 7427 02:35:37 28 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:35:37 28 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:35:37 28 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:35:37 28 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:35:37 28 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170127163536 ] 02:35:37 28 Jan 2017 UTC: INFO: Base.py(1333): PID:7434 02:35:37 28 Jan 2017 UTC: INFO: Base.py(1375): Started processing 02:35:37 28 Jan 2017 UTC 02:35:37 28 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:35:37 28 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:35:37 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:35:37 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:35:37 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:29 calls_made:1 call_cycle:0 02:35:37 28 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:29 calls_made:1 call_cycle:0 2244.8750 -15759.0480 01/28/17 02:31:26 UTC) to sdrifter@soest.hawaii.edu 02:35:37 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:29 calls_made:1 call_cycle:0 02:35:37 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 02:35:37 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:29 calls_made:1 call_cycle:0 02:35:37 28 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:29 calls_made:1 call_cycle:0 2244.8750 -15759.0480 01/28/17 02:31:26 UTC) to seaglider@km.soest.hawaii.edu 02:35:37 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:29 calls_made:1 call_cycle:0 02:35:37 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:35:37 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:29 calls_made:1 call_cycle:0 02:35:37 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:35:37 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:29 calls_made:1 call_cycle:0 02:35:37 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:35:37 28 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:35:38 28 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:35:38 28 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:35:38 28 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:35:38 28 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:35:38 28 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:35:38 28 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:35:38 28 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0029lz 02:35:38 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0029lz.x00 02:35:38 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0029lz.x01 02:35:38 28 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0029lz.r in process_file_group 02:35:38 28 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260029.log 02:35:38 28 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 02:35:38 28 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0029dz 02:35:38 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0029dz.x00 02:35:38 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0029dz.x01 02:35:38 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0029dz.x02 02:35:38 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0029dz.x03 02:35:38 28 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0029dz.r in process_file_group 02:35:39 28 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [29] 02:35:39 28 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [29] 02:35:39 28 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260029) for profiles 02:35:39 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 02:35:39 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/556) 556 to QC_BAD because CT out of water 02:35:39 28 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.090m) 02:35:39 28 Jan 2017 UTC: INFO: QC.py(365): Changed (6/556) 2 205 207 355 356 555 to QC_PROBABLY_BAD because raw temperature spikes 02:35:39 28 Jan 2017 UTC: INFO: QC.py(408): Changed (1/556) 207 to QC_PROBABLY_BAD because raw conductivity spikes 02:35:39 28 Jan 2017 UTC: INFO: QC.py(180): Changed (6/556) 2 205 207 355 356 555 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:35:39 28 Jan 2017 UTC: INFO: QC.py(180): Changed (1/556) 556 to QC_BAD because changed raw cond implies changed raw salinity 02:35:39 28 Jan 2017 UTC: INFO: QC.py(365): Changed (6/556) 2 205 207 355 356 555 to QC_INTERPOLATED because temperature spikes 02:35:39 28 Jan 2017 UTC: INFO: QC.py(408): Changed (1/556) 207 to QC_INTERPOLATED because conductivity spikes 02:35:39 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/556) 203:208 to QC_BAD because slow apogee CT flow 02:35:39 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/556) 1:6 to QC_BAD because prior to dive start 02:35:39 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/556) 555 to QC_BAD because end of climb 02:35:39 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/556) 1:6 203:208 555 556 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:35:39 28 Jan 2017 UTC: INFO: QC.py(180): Changed (14/556) 1:6 203:208 555 556 to QC_BAD because changed corrected salin implies changed speed 02:35:39 28 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:35:39 28 Jan 2017 UTC: INFO: QC.py(180): Changed (2/556) 355 356 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 02:35:39 28 Jan 2017 UTC: INFO: QC.py(180): Changed (2/556) 355 356 to QC_INTERPOLATED because changed corrected temp implies changed speed 02:35:39 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.82 cm/s 02:35:39 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.29 cm/s 02:35:39 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:35:39 28 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (111/556) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:35:39 28 Jan 2017 UTC: INFO: QC.py(180): Changed (4/556) 2 355 356 555 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:35:39 28 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (111/556) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 02:35:39 28 Jan 2017 UTC: INFO: QC.py(180): Changed (4/556) 2 355 356 555 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:35:39 28 Jan 2017 UTC: INFO: QC.py(180): Changed (14/556) 1:6 203:208 555 556 to QC_BAD because changed salinity implies changed optode oxygen 02:35:39 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:35:40 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 02:35:40 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 29: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.52% reduction 02:35:40 28 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.29 02:35:40 28 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.29 02:35:40 28 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:35:40 28 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:35:40 28 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:35:40 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 02:35:40 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 02:35:49 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 02:35:49 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 02:35:49 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 02:35:51 28 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:35:51 28 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:35:51 28 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:35:51 28 Jan 2017 UTC /home/sg626/p6260029.log /home/sg626/p6260029.eng /home/sg626/p6260029.asc /home/sg626/p6260029.pro /home/sg626/p6260029.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 02:35:51 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:35:51 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:35:51 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 02:35:51 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:35:51 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:35:51 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:35:51 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:35:51 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:35:51 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 02:35:51 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:35:51 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:35:51 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:35:51 28 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:35:51 28 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:35:51 28 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:35:51 28 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:35:51 28 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:35:51 28 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:35:51 28 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:35:51 28 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 02:35:51 28 Jan 2017 UTC 04:20:57 28 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 10685 04:20:57 28 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 04:23:12 28 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 10795 04:23:12 28 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:23:12 28 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:23:12 28 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:23:12 28 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:23:13 28 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170127182312 ] 04:23:13 28 Jan 2017 UTC: INFO: Base.py(1333): PID:10803 04:23:13 28 Jan 2017 UTC: INFO: Base.py(1375): Started processing 04:23:13 28 Jan 2017 UTC 04:23:13 28 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:23:13 28 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:23:13 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:23:13 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:23:13 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:30 calls_made:1 call_cycle:0 04:23:13 28 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:30 calls_made:1 call_cycle:0 2245.9140 -15759.7280 01/28/17 04:19:10 UTC) to sdrifter@soest.hawaii.edu 04:23:13 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:30 calls_made:1 call_cycle:0 04:23:13 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 04:23:13 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:30 calls_made:1 call_cycle:0 04:23:13 28 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:30 calls_made:1 call_cycle:0 2245.9140 -15759.7280 01/28/17 04:19:10 UTC) to seaglider@km.soest.hawaii.edu 04:23:13 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:30 calls_made:1 call_cycle:0 04:23:13 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:23:13 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:30 calls_made:1 call_cycle:0 04:23:13 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:23:13 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:30 calls_made:1 call_cycle:0 04:23:13 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:23:13 28 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:23:14 28 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:23:14 28 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:23:14 28 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:23:14 28 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:23:14 28 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:23:14 28 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:23:14 28 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0030lz 04:23:14 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0030lz.x00 04:23:14 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0030lz.x01 04:23:14 28 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0030lz.r in process_file_group 04:23:14 28 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260030.log 04:23:14 28 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:23:14 28 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0030dz 04:23:14 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0030dz.x00 04:23:14 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0030dz.x01 04:23:14 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0030dz.x02 04:23:14 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0030dz.x03 04:23:14 28 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0030dz.r in process_file_group 04:23:15 28 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [30] 04:23:15 28 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [30] 04:23:15 28 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260030) for profiles 04:23:15 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 04:23:15 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/456) 456 to QC_BAD because CT out of water 04:23:15 28 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.100m) 04:23:15 28 Jan 2017 UTC: INFO: QC.py(365): Changed (2/456) 169 455 to QC_PROBABLY_BAD because raw temperature spikes 04:23:15 28 Jan 2017 UTC: INFO: QC.py(377): Changed (1/456) 456 to QC_BAD because raw salinity below bound 04:23:15 28 Jan 2017 UTC: INFO: QC.py(180): Changed (2/456) 169 455 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:23:15 28 Jan 2017 UTC: INFO: QC.py(365): Changed (2/456) 169 455 to QC_INTERPOLATED because temperature spikes 04:23:15 28 Jan 2017 UTC: INFO: QC.py(377): Changed (1/456) 456 to QC_BAD because salinity below bound 04:23:15 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/456) 167:171 to QC_BAD because slow apogee CT flow 04:23:15 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/456) 1:6 to QC_BAD because prior to dive start 04:23:15 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/456) 1:6 167:171 456 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:23:15 28 Jan 2017 UTC: INFO: QC.py(180): Changed (12/456) 1:6 167:171 456 to QC_BAD because changed corrected salin implies changed speed 04:23:15 28 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:23:15 28 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 30 interp_salinity data_points in_between 324 335 % suspect thermal-inertia points 330:332 04:23:15 28 Jan 2017 UTC: INFO: QC.py(180): Changed (1/456) 455 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 04:23:15 28 Jan 2017 UTC: INFO: QC.py(180): Changed (1/456) 455 to QC_INTERPOLATED because changed corrected temp implies changed speed 04:23:15 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.04 cm/s 04:23:15 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.89 cm/s 04:23:15 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:23:15 28 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (64/456) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:23:15 28 Jan 2017 UTC: INFO: QC.py(180): Changed (1/456) 455 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:23:15 28 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (64/456) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 04:23:15 28 Jan 2017 UTC: INFO: QC.py(180): Changed (1/456) 455 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:23:15 28 Jan 2017 UTC: INFO: QC.py(180): Changed (12/456) 1:6 167:171 456 to QC_BAD because changed salinity implies changed optode oxygen 04:23:15 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:23:15 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 04:23:16 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 30: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.63% reduction 04:23:16 28 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.30 04:23:16 28 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.30 04:23:16 28 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:23:16 28 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:23:16 28 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:23:16 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 04:23:16 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 04:23:25 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 04:23:25 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 04:23:25 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 04:23:27 28 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:23:27 28 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:23:27 28 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:23:27 28 Jan 2017 UTC /home/sg626/p6260030.log /home/sg626/p6260030.eng /home/sg626/p6260030.asc /home/sg626/p6260030.pro /home/sg626/p6260030.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 04:23:27 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:23:27 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:23:27 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 04:23:27 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:23:27 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:23:27 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:23:27 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:23:27 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:23:27 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 04:23:27 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:23:27 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:23:27 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:23:27 28 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:23:27 28 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:23:27 28 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:23:27 28 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:23:27 28 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:23:27 28 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:23:27 28 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:23:27 28 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 04:23:27 28 Jan 2017 UTC 06:09:32 28 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 13943 06:09:32 28 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 06:11:48 28 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 14218 06:11:48 28 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:11:48 28 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 06:11:48 28 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 06:11:48 28 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:11:48 28 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170127201147 ] 06:11:48 28 Jan 2017 UTC: INFO: Base.py(1333): PID:14226 06:11:48 28 Jan 2017 UTC: INFO: Base.py(1375): Started processing 06:11:48 28 Jan 2017 UTC 06:11:48 28 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 06:11:48 28 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 06:11:48 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:11:48 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:11:48 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:31 calls_made:1 call_cycle:0 06:11:48 28 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:31 calls_made:1 call_cycle:0 2247.0740 -15800.1490 01/28/17 06:07:49 UTC) to sdrifter@soest.hawaii.edu 06:11:48 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:31 calls_made:1 call_cycle:0 06:11:48 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 06:11:48 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:31 calls_made:1 call_cycle:0 06:11:48 28 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:31 calls_made:1 call_cycle:0 2247.0740 -15800.1490 01/28/17 06:07:49 UTC) to seaglider@km.soest.hawaii.edu 06:11:48 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:31 calls_made:1 call_cycle:0 06:11:48 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:11:48 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:31 calls_made:1 call_cycle:0 06:11:48 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:11:48 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:31 calls_made:1 call_cycle:0 06:11:48 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:11:48 28 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:11:49 28 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:11:49 28 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:11:49 28 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 06:11:49 28 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:11:49 28 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:11:49 28 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 06:11:49 28 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0031lz 06:11:49 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0031lz.x00 06:11:49 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0031lz.x01 06:11:49 28 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0031lz.r in process_file_group 06:11:49 28 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260031.log 06:11:49 28 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 06:11:49 28 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0031dz 06:11:49 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0031dz.x00 06:11:49 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0031dz.x01 06:11:49 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0031dz.x02 06:11:49 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0031dz.x03 06:11:49 28 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0031dz.r in process_file_group 06:11:50 28 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [31] 06:11:50 28 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [31] 06:11:50 28 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260031) for profiles 06:11:50 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 06:11:50 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/450) 449 450 to QC_BAD because CT out of water 06:11:50 28 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.035m) 06:11:50 28 Jan 2017 UTC: INFO: QC.py(365): Changed (3/450) 2 5 449 to QC_PROBABLY_BAD because raw temperature spikes 06:11:50 28 Jan 2017 UTC: INFO: QC.py(377): Changed (2/450) 449 450 to QC_BAD because raw salinity below bound 06:11:50 28 Jan 2017 UTC: INFO: QC.py(180): Changed (2/450) 2 5 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 06:11:50 28 Jan 2017 UTC: INFO: QC.py(365): Changed (3/450) 2 5 449 to QC_INTERPOLATED because temperature spikes 06:11:50 28 Jan 2017 UTC: INFO: QC.py(377): Changed (2/450) 449 450 to QC_BAD because salinity below bound 06:11:50 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/450) 164:168 to QC_BAD because slow apogee CT flow 06:11:50 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/450) 1:6 to QC_BAD because prior to dive start 06:11:50 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/450) 1:6 164:168 449 450 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 06:11:50 28 Jan 2017 UTC: INFO: QC.py(180): Changed (13/450) 1:6 164:168 449 450 to QC_BAD because changed corrected salin implies changed speed 06:11:50 28 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 06:11:50 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.26 cm/s 06:11:50 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.49 cm/s 06:11:50 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 06:11:50 28 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (65/450) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 06:11:50 28 Jan 2017 UTC: INFO: QC.py(180): Changed (3/450) 2 5 449 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 06:11:50 28 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (65/450) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 06:11:50 28 Jan 2017 UTC: INFO: QC.py(180): Changed (3/450) 2 5 449 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 06:11:50 28 Jan 2017 UTC: INFO: QC.py(180): Changed (13/450) 1:6 164:168 449 450 to QC_BAD because changed salinity implies changed optode oxygen 06:11:50 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 06:11:50 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 06:11:51 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 31: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.89% reduction 06:11:51 28 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.31 06:11:51 28 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.31 06:11:51 28 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:11:51 28 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:11:51 28 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:11:51 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 06:11:51 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 06:12:00 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 06:12:01 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 06:12:01 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 06:12:03 28 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:12:03 28 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:12:03 28 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 06:12:03 28 Jan 2017 UTC /home/sg626/p6260031.log /home/sg626/p6260031.eng /home/sg626/p6260031.asc /home/sg626/p6260031.pro /home/sg626/p6260031.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 06:12:03 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:12:03 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:12:03 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 06:12:03 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:12:03 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:12:03 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:12:03 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:12:03 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:12:03 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 06:12:03 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:12:03 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:12:03 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:12:03 28 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 06:12:03 28 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 06:12:03 28 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 06:12:03 28 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 06:12:03 28 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:12:03 28 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:12:03 28 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:12:03 28 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 06:12:03 28 Jan 2017 UTC 07:59:32 28 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 17342 07:59:32 28 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 08:01:56 28 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 17780 08:01:56 28 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:01:56 28 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:01:56 28 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:01:56 28 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:01:56 28 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170127220156 ] 08:01:56 28 Jan 2017 UTC: INFO: Base.py(1333): PID:17788 08:01:56 28 Jan 2017 UTC: INFO: Base.py(1375): Started processing 08:01:56 28 Jan 2017 UTC 08:01:56 28 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:01:57 28 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:01:57 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:01:57 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:01:57 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:32 calls_made:1 call_cycle:0 08:01:57 28 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:32 calls_made:1 call_cycle:0 2248.0090 -15800.4410 01/28/17 07:57:46 UTC) to sdrifter@soest.hawaii.edu 08:01:57 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:32 calls_made:1 call_cycle:0 08:01:57 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 08:01:57 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:32 calls_made:1 call_cycle:0 08:01:57 28 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:32 calls_made:1 call_cycle:0 2248.0090 -15800.4410 01/28/17 07:57:46 UTC) to seaglider@km.soest.hawaii.edu 08:01:57 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:32 calls_made:1 call_cycle:0 08:01:57 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:01:57 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:32 calls_made:1 call_cycle:0 08:01:57 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:01:57 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:32 calls_made:1 call_cycle:0 08:01:57 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:01:57 28 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:01:58 28 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:01:58 28 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:01:58 28 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:01:58 28 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:01:58 28 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:01:58 28 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:01:58 28 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0032lz 08:01:58 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0032lz.x00 08:01:58 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0032lz.x01 08:01:58 28 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0032lz.r in process_file_group 08:01:58 28 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260032.log 08:01:58 28 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:01:58 28 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0032dz 08:01:58 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0032dz.x00 08:01:58 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0032dz.x01 08:01:58 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0032dz.x02 08:01:58 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0032dz.x03 08:01:58 28 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0032dz.r in process_file_group 08:01:58 28 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [32] 08:01:58 28 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [32] 08:01:58 28 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260032) for profiles 08:01:58 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:01:58 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/458) 457 458 to QC_BAD because CT out of water 08:01:58 28 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.032m) 08:01:58 28 Jan 2017 UTC: INFO: QC.py(365): Changed (1/458) 178 to QC_PROBABLY_BAD because raw temperature spikes 08:01:58 28 Jan 2017 UTC: INFO: QC.py(377): Changed (1/458) 458 to QC_BAD because raw salinity below bound 08:01:58 28 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <81 pt uncorrectable 397.7m SUSPECT weak conductivity anomaly n:-0.29 p:0.27> 08:01:59 28 Jan 2017 UTC: INFO: QC.py(180): Changed (1/458) 178 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:01:59 28 Jan 2017 UTC: INFO: QC.py(180): Changed (1/458) 457 to QC_BAD because changed raw cond implies changed raw salinity 08:01:59 28 Jan 2017 UTC: INFO: QC.py(365): Changed (1/458) 178 to QC_INTERPOLATED because temperature spikes 08:01:59 28 Jan 2017 UTC: INFO: QC.py(377): Changed (1/458) 458 to QC_BAD because salinity below bound 08:01:59 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/458) 176:180 to QC_BAD because slow apogee CT flow 08:01:59 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/458) 1:6 to QC_BAD because prior to dive start 08:01:59 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/458) 1:6 176:180 457 458 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:01:59 28 Jan 2017 UTC: INFO: QC.py(180): Changed (13/458) 1:6 176:180 457 458 to QC_BAD because changed corrected salin implies changed speed 08:01:59 28 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:01:59 28 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 32 interp_salinity data_points in_between 339 344 % suspect thermal-inertia points 340 341 08:01:59 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.20 cm/s 08:01:59 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.53 cm/s 08:01:59 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:01:59 28 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (66/458) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:01:59 28 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (66/458) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:01:59 28 Jan 2017 UTC: INFO: QC.py(180): Changed (13/458) 1:6 176:180 457 458 to QC_BAD because changed salinity implies changed optode oxygen 08:01:59 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:01:59 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 08:01:59 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 32: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.84% reduction 08:01:59 28 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.32 08:01:59 28 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.32 08:01:59 28 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:01:59 28 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:01:59 28 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:01:59 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 08:01:59 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 08:02:09 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 08:02:09 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 08:02:09 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 08:02:12 28 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:02:12 28 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:02:12 28 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:02:12 28 Jan 2017 UTC /home/sg626/p6260032.log /home/sg626/p6260032.eng /home/sg626/p6260032.asc /home/sg626/p6260032.pro /home/sg626/p6260032.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 08:02:12 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:02:12 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:02:12 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 08:02:12 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:02:12 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:02:12 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:02:12 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:02:12 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:02:12 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 08:02:12 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:02:12 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:02:12 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:02:12 28 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:02:12 28 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:02:12 28 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:02:12 28 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:02:12 28 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:02:12 28 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:02:12 28 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:02:12 28 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 08:02:12 28 Jan 2017 UTC 09:44:57 28 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 20683 09:44:57 28 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 09:47:16 28 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 20793 09:47:16 28 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:47:16 28 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:47:16 28 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:47:16 28 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:47:16 28 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170127234716 ] 09:47:16 28 Jan 2017 UTC: INFO: Base.py(1333): PID:20801 09:47:16 28 Jan 2017 UTC: INFO: Base.py(1375): Started processing 09:47:16 28 Jan 2017 UTC 09:47:16 28 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:47:17 28 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:47:17 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:47:17 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:47:17 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:33 calls_made:1 call_cycle:0 09:47:17 28 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:33 calls_made:1 call_cycle:0 2248.4180 -15800.3120 01/28/17 09:43:10 UTC) to sdrifter@soest.hawaii.edu 09:47:17 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:33 calls_made:1 call_cycle:0 09:47:17 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 09:47:17 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:33 calls_made:1 call_cycle:0 09:47:17 28 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:33 calls_made:1 call_cycle:0 2248.4180 -15800.3120 01/28/17 09:43:10 UTC) to seaglider@km.soest.hawaii.edu 09:47:17 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:33 calls_made:1 call_cycle:0 09:47:17 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:47:17 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:33 calls_made:1 call_cycle:0 09:47:17 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:47:17 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:33 calls_made:1 call_cycle:0 09:47:17 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:47:17 28 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:47:18 28 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:47:18 28 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:47:18 28 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:47:18 28 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:47:18 28 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:47:18 28 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:47:18 28 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0033lz 09:47:18 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0033lz.x00 09:47:18 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0033lz.x01 09:47:18 28 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0033lz.r in process_file_group 09:47:18 28 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260033.log 09:47:18 28 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:47:18 28 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0033dz 09:47:18 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0033dz.x00 09:47:18 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0033dz.x01 09:47:18 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0033dz.x02 09:47:18 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0033dz.x03 09:47:18 28 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0033dz.r in process_file_group 09:47:18 28 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [33] 09:47:18 28 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [33] 09:47:18 28 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260033) for profiles 09:47:18 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 09:47:18 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/447) 446 447 to QC_BAD because CT out of water 09:47:18 28 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.054m) 09:47:18 28 Jan 2017 UTC: INFO: QC.py(365): Changed (3/447) 2 5 446 to QC_PROBABLY_BAD because raw temperature spikes 09:47:18 28 Jan 2017 UTC: INFO: QC.py(377): Changed (2/447) 446 447 to QC_BAD because raw salinity below bound 09:47:18 28 Jan 2017 UTC: INFO: QC.py(180): Changed (2/447) 2 5 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 09:47:18 28 Jan 2017 UTC: INFO: QC.py(365): Changed (3/447) 2 5 446 to QC_INTERPOLATED because temperature spikes 09:47:18 28 Jan 2017 UTC: INFO: QC.py(377): Changed (2/447) 446 447 to QC_BAD because salinity below bound 09:47:18 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/447) 172:177 to QC_BAD because slow apogee CT flow 09:47:18 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/447) 1:6 to QC_BAD because prior to dive start 09:47:18 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/447) 1:6 172:177 446 447 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:47:18 28 Jan 2017 UTC: INFO: QC.py(180): Changed (14/447) 1:6 172:177 446 447 to QC_BAD because changed corrected salin implies changed speed 09:47:19 28 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:47:19 28 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 33 interp_salinity data_points in_between 334 407 % suspect thermal-inertia points 334 09:47:19 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.01 cm/s 09:47:19 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.63 cm/s 09:47:19 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:47:19 28 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (64/447) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:47:19 28 Jan 2017 UTC: INFO: QC.py(180): Changed (3/447) 2 5 446 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:47:19 28 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (64/447) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 09:47:19 28 Jan 2017 UTC: INFO: QC.py(180): Changed (3/447) 2 5 446 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:47:19 28 Jan 2017 UTC: INFO: QC.py(180): Changed (14/447) 1:6 172:177 446 447 to QC_BAD because changed salinity implies changed optode oxygen 09:47:19 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:47:19 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 09:47:19 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 33: Data set size for profile, binned and kkyy files reduced by 14 points, a 3.13% reduction 09:47:19 28 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.33 09:47:19 28 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.33 09:47:19 28 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:47:19 28 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:47:19 28 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:47:19 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 09:47:19 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 09:47:30 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 09:47:30 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 09:47:30 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 09:47:32 28 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:47:32 28 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:47:32 28 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:47:32 28 Jan 2017 UTC /home/sg626/p6260033.log /home/sg626/p6260033.eng /home/sg626/p6260033.asc /home/sg626/p6260033.pro /home/sg626/p6260033.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 09:47:32 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:47:32 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:47:32 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 09:47:32 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:47:32 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:47:32 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:47:32 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:47:32 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:47:32 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 09:47:32 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:47:32 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:47:32 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:47:32 28 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:47:32 28 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:47:32 28 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:47:32 28 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:47:32 28 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:47:32 28 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:47:32 28 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:47:32 28 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 09:47:32 28 Jan 2017 UTC 11:29:54 28 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 24409 11:29:54 28 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 11:32:15 28 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 24612 11:32:15 28 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:32:15 28 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 11:32:15 28 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 11:32:15 28 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:32:15 28 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170128013215 ] 11:32:15 28 Jan 2017 UTC: INFO: Base.py(1333): PID:24620 11:32:16 28 Jan 2017 UTC: INFO: Base.py(1375): Started processing 11:32:16 28 Jan 2017 UTC 11:32:16 28 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 11:32:16 28 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 11:32:16 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:32:16 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:32:16 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:34 calls_made:1 call_cycle:0 11:32:16 28 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:34 calls_made:1 call_cycle:0 2248.7460 -15800.4530 01/28/17 11:28:01 UTC) to sdrifter@soest.hawaii.edu 11:32:16 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:34 calls_made:1 call_cycle:0 11:32:16 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 11:32:16 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:34 calls_made:1 call_cycle:0 11:32:16 28 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:34 calls_made:1 call_cycle:0 2248.7460 -15800.4530 01/28/17 11:28:01 UTC) to seaglider@km.soest.hawaii.edu 11:32:16 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:34 calls_made:1 call_cycle:0 11:32:16 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:32:16 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:34 calls_made:1 call_cycle:0 11:32:16 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:32:16 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:34 calls_made:1 call_cycle:0 11:32:16 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:32:16 28 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:32:17 28 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:32:17 28 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:32:17 28 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 11:32:17 28 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:32:17 28 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:32:17 28 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 11:32:17 28 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0034lz 11:32:17 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0034lz.x00 11:32:17 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0034lz.x01 11:32:17 28 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0034lz.r in process_file_group 11:32:17 28 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260034.log 11:32:17 28 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 11:32:17 28 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0034dz 11:32:17 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0034dz.x00 11:32:17 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0034dz.x01 11:32:17 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0034dz.x02 11:32:17 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0034dz.x03 11:32:17 28 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0034dz.r in process_file_group 11:32:18 28 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [34] 11:32:18 28 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [34] 11:32:18 28 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260034) for profiles 11:32:18 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 11:32:18 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/445) 445 to QC_BAD because CT out of water 11:32:18 28 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.043m) 11:32:18 28 Jan 2017 UTC: INFO: QC.py(377): Changed (1/445) 444 to QC_BAD because raw salinity below bound 11:32:18 28 Jan 2017 UTC: INFO: QC.py(388): Changed (1/445) 444 to QC_BAD because bad raw salinity indicates raw conductivity issues 11:32:18 28 Jan 2017 UTC: INFO: QC.py(180): Changed (1/445) 445 to QC_BAD because changed raw cond implies changed raw salinity 11:32:18 28 Jan 2017 UTC: INFO: QC.py(377): Changed (1/445) 444 to QC_BAD because salinity below bound 11:32:18 28 Jan 2017 UTC: INFO: QC.py(388): Changed (1/445) 444 to QC_BAD because bad salinity indicates conductivity issues 11:32:18 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/445) 163:168 to QC_BAD because slow apogee CT flow 11:32:18 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/445) 1:6 to QC_BAD because prior to dive start 11:32:18 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/445) 1:6 163:168 444 445 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 11:32:18 28 Jan 2017 UTC: INFO: QC.py(180): Changed (14/445) 1:6 163:168 444 445 to QC_BAD because changed corrected salin implies changed speed 11:32:18 28 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 11:32:18 28 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 34 interp_salinity data_points in_between 224 229 % suspect thermal-inertia points 227 11:32:18 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.41 cm/s 11:32:18 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.56 cm/s 11:32:18 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 11:32:18 28 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (62/445) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 11:32:18 28 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (62/445) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 11:32:18 28 Jan 2017 UTC: INFO: QC.py(180): Changed (14/445) 1:6 163:168 444 445 to QC_BAD because changed salinity implies changed optode oxygen 11:32:18 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 11:32:18 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 11:32:19 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 34: Data set size for profile, binned and kkyy files reduced by 14 points, a 3.15% reduction 11:32:19 28 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.34 11:32:19 28 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.34 11:32:19 28 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:32:19 28 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:32:19 28 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:32:19 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 11:32:19 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 11:32:29 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 11:32:29 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 11:32:29 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 11:32:32 28 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:32:32 28 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:32:32 28 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:32:32 28 Jan 2017 UTC /home/sg626/p6260034.log /home/sg626/p6260034.eng /home/sg626/p6260034.asc /home/sg626/p6260034.pro /home/sg626/p6260034.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 11:32:32 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:32:32 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:32:32 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 11:32:32 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:32:32 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:32:32 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:32:32 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:32:32 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:32:32 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 11:32:32 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:32:32 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:32:32 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:32:32 28 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 11:32:32 28 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 11:32:32 28 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 11:32:32 28 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 11:32:32 28 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:32:32 28 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:32:32 28 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:32:32 28 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 11:32:32 28 Jan 2017 UTC 13:33:03 28 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 28249 13:33:03 28 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 13:35:29 28 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 28392 13:35:29 28 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:35:29 28 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:35:29 28 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:35:29 28 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:35:29 28 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170128033529 ] 13:35:29 28 Jan 2017 UTC: INFO: Base.py(1333): PID:28401 13:35:29 28 Jan 2017 UTC: INFO: Base.py(1375): Started processing 13:35:29 28 Jan 2017 UTC 13:35:29 28 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:35:29 28 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:35:29 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:35:29 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:35:29 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:35 calls_made:1 call_cycle:0 13:35:29 28 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:35 calls_made:1 call_cycle:0 2249.4550 -15801.2030 01/28/17 13:31:08 UTC) to sdrifter@soest.hawaii.edu 13:35:30 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:35 calls_made:1 call_cycle:0 13:35:30 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 13:35:30 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:35 calls_made:1 call_cycle:0 13:35:30 28 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:35 calls_made:1 call_cycle:0 2249.4550 -15801.2030 01/28/17 13:31:08 UTC) to seaglider@km.soest.hawaii.edu 13:35:30 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:35 calls_made:1 call_cycle:0 13:35:30 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:35:30 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:35 calls_made:1 call_cycle:0 13:35:30 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:35:30 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:35 calls_made:1 call_cycle:0 13:35:30 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:35:30 28 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:35:31 28 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:35:31 28 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:35:31 28 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:35:31 28 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:35:31 28 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:35:31 28 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:35:31 28 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0035lz 13:35:31 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0035lz.x00 13:35:31 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0035lz.x01 13:35:31 28 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0035lz.r in process_file_group 13:35:31 28 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260035.log 13:35:31 28 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:35:31 28 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0035dz 13:35:31 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0035dz.x00 13:35:31 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0035dz.x01 13:35:31 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0035dz.x02 13:35:31 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0035dz.x03 13:35:31 28 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0035dz.r in process_file_group 13:35:31 28 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [35] 13:35:31 28 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [35] 13:35:31 28 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260035) for profiles 13:35:31 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:35:31 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/539) 539 to QC_BAD because CT out of water 13:35:31 28 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.146m) 13:35:31 28 Jan 2017 UTC: INFO: QC.py(365): Changed (1/539) 2 to QC_PROBABLY_BAD because raw temperature spikes 13:35:31 28 Jan 2017 UTC: INFO: QC.py(180): Changed (1/539) 2 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:35:31 28 Jan 2017 UTC: INFO: QC.py(180): Changed (1/539) 539 to QC_BAD because changed raw cond implies changed raw salinity 13:35:31 28 Jan 2017 UTC: INFO: QC.py(365): Changed (1/539) 2 to QC_INTERPOLATED because temperature spikes 13:35:31 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/539) 193:198 to QC_BAD because slow apogee CT flow 13:35:31 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/539) 1:6 to QC_BAD because prior to dive start 13:35:31 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/539) 537 538 to QC_BAD because end of climb 13:35:31 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/539) 1:6 193:198 537:539 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:35:31 28 Jan 2017 UTC: INFO: QC.py(180): Changed (15/539) 1:6 193:198 537:539 to QC_BAD because changed corrected salin implies changed speed 13:35:32 28 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:35:32 28 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 35 interp_salinity data_points in_between 263 265 % suspect thermal-inertia points 264 13:35:32 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.51 cm/s 13:35:32 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.19 cm/s 13:35:32 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:35:32 28 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (73/539) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:35:32 28 Jan 2017 UTC: INFO: QC.py(180): Changed (1/539) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:35:32 28 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (73/539) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:35:32 28 Jan 2017 UTC: INFO: QC.py(180): Changed (1/539) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:35:32 28 Jan 2017 UTC: INFO: QC.py(180): Changed (15/539) 1:6 193:198 537:539 to QC_BAD because changed salinity implies changed optode oxygen 13:35:32 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:35:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:35:32 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 35: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.78% reduction 13:35:32 28 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.35 13:35:32 28 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.35 13:35:32 28 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:35:32 28 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:35:32 28 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:35:32 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:35:32 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:35:43 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 13:35:43 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:35:43 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:35:46 28 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:35:46 28 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:35:46 28 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:35:46 28 Jan 2017 UTC /home/sg626/p6260035.log /home/sg626/p6260035.eng /home/sg626/p6260035.asc /home/sg626/p6260035.pro /home/sg626/p6260035.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:35:46 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:35:46 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:35:46 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 13:35:46 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:35:46 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:35:46 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:35:46 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:35:46 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:35:46 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 13:35:46 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:35:46 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:35:46 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:35:46 28 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:35:46 28 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:35:46 28 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:35:46 28 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:35:46 28 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:35:46 28 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:35:46 28 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:35:46 28 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 13:35:46 28 Jan 2017 UTC 15:30:06 28 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 32058 15:30:06 28 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 15:32:24 28 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 32168 15:32:24 28 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 15:32:24 28 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 15:32:24 28 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 15:32:24 28 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 15:32:24 28 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170128053223 ] 15:32:24 28 Jan 2017 UTC: INFO: Base.py(1333): PID:32176 15:32:24 28 Jan 2017 UTC: INFO: Base.py(1375): Started processing 15:32:24 28 Jan 2017 UTC 15:32:24 28 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 15:32:24 28 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 15:32:24 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 15:32:24 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:32:24 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:36 calls_made:1 call_cycle:0 15:32:24 28 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:36 calls_made:1 call_cycle:0 2249.2860 -15801.0990 01/28/17 15:28:20 UTC) to sdrifter@soest.hawaii.edu 15:32:24 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:36 calls_made:1 call_cycle:0 15:32:24 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 15:32:24 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:36 calls_made:1 call_cycle:0 15:32:24 28 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:36 calls_made:1 call_cycle:0 2249.2860 -15801.0990 01/28/17 15:28:20 UTC) to seaglider@km.soest.hawaii.edu 15:32:24 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:36 calls_made:1 call_cycle:0 15:32:24 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:32:24 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:36 calls_made:1 call_cycle:0 15:32:24 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:32:24 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:36 calls_made:1 call_cycle:0 15:32:24 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:32:24 28 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 15:32:25 28 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 15:32:25 28 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 15:32:25 28 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 15:32:25 28 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 15:32:25 28 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 15:32:25 28 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 15:32:25 28 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0036lz 15:32:25 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0036lz.x00 15:32:25 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0036lz.x01 15:32:25 28 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0036lz.r in process_file_group 15:32:25 28 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260036.log 15:32:25 28 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 15:32:25 28 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0036dz 15:32:25 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0036dz.x00 15:32:25 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0036dz.x01 15:32:25 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0036dz.x02 15:32:25 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0036dz.x03 15:32:25 28 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0036dz.r in process_file_group 15:32:26 28 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [36] 15:32:26 28 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [36] 15:32:26 28 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260036) for profiles 15:32:26 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 15:32:26 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/489) 488 to QC_BAD because CT out of water 15:32:26 28 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.019m) 15:32:26 28 Jan 2017 UTC: INFO: QC.py(365): Changed (1/489) 488 to QC_PROBABLY_BAD because raw temperature spikes 15:32:26 28 Jan 2017 UTC: INFO: QC.py(180): Changed (1/489) 488 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 15:32:26 28 Jan 2017 UTC: INFO: QC.py(180): Changed (1/489) 488 to QC_BAD because changed raw cond implies changed raw salinity 15:32:26 28 Jan 2017 UTC: INFO: QC.py(365): Changed (1/489) 488 to QC_INTERPOLATED because temperature spikes 15:32:26 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/489) 183:187 to QC_BAD because slow apogee CT flow 15:32:26 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/489) 1:6 to QC_BAD because prior to dive start 15:32:26 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/489) 487 489 to QC_BAD because end of climb 15:32:26 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/489) 1:6 183:187 487:489 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 15:32:26 28 Jan 2017 UTC: INFO: QC.py(180): Changed (14/489) 1:6 183:187 487:489 to QC_BAD because changed corrected salin implies changed speed 15:32:26 28 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 15:32:26 28 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 36 interp_salinity data_points in_between 250 263 % suspect thermal-inertia points 255 15:32:26 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.61 cm/s 15:32:26 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.19 cm/s 15:32:26 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 15:32:26 28 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (72/489) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 15:32:26 28 Jan 2017 UTC: INFO: QC.py(180): Changed (1/489) 488 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 15:32:26 28 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (72/489) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 15:32:26 28 Jan 2017 UTC: INFO: QC.py(180): Changed (1/489) 488 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 15:32:26 28 Jan 2017 UTC: INFO: QC.py(180): Changed (14/489) 1:6 183:187 487:489 to QC_BAD because changed salinity implies changed optode oxygen 15:32:26 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 15:32:26 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 15:32:27 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 36: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.86% reduction 15:32:27 28 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.36 15:32:27 28 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.36 15:32:27 28 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 15:32:27 28 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 15:32:27 28 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 15:32:27 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 15:32:27 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 15:32:38 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 15:32:38 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 15:32:38 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 15:32:41 28 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 15:32:41 28 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 15:32:41 28 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 15:32:41 28 Jan 2017 UTC /home/sg626/p6260036.log /home/sg626/p6260036.eng /home/sg626/p6260036.asc /home/sg626/p6260036.pro /home/sg626/p6260036.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 15:32:41 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 15:32:41 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:32:41 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 15:32:41 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:32:41 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:32:41 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:32:41 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 15:32:41 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:32:41 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 15:32:41 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:32:41 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:32:41 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:32:41 28 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 15:32:41 28 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 15:32:41 28 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 15:32:41 28 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 15:32:41 28 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 15:32:41 28 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 15:32:41 28 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 15:32:41 28 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 15:32:41 28 Jan 2017 UTC 17:27:52 28 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 3522 17:27:52 28 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 17:30:20 28 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 3658 17:30:20 28 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:30:20 28 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:30:20 28 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:30:20 28 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:30:20 28 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170128073019 ] 17:30:20 28 Jan 2017 UTC: INFO: Base.py(1333): PID:3666 17:30:20 28 Jan 2017 UTC: INFO: Base.py(1375): Started processing 17:30:20 28 Jan 2017 UTC 17:30:20 28 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:30:20 28 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:30:20 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:30:20 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:30:20 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:37 calls_made:1 call_cycle:0 17:30:20 28 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:37 calls_made:1 call_cycle:0 2248.9640 -15801.1530 01/28/17 17:26:01 UTC) to sdrifter@soest.hawaii.edu 17:30:21 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:37 calls_made:1 call_cycle:0 17:30:21 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 17:30:21 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:37 calls_made:1 call_cycle:0 17:30:21 28 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:37 calls_made:1 call_cycle:0 2248.9640 -15801.1530 01/28/17 17:26:01 UTC) to seaglider@km.soest.hawaii.edu 17:30:21 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:37 calls_made:1 call_cycle:0 17:30:21 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:30:21 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:37 calls_made:1 call_cycle:0 17:30:21 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:30:21 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:37 calls_made:1 call_cycle:0 17:30:21 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:30:21 28 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:30:22 28 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:30:22 28 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:30:22 28 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:30:22 28 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:30:22 28 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:30:22 28 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:30:22 28 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0037lz 17:30:22 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0037lz.x00 17:30:22 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0037lz.x01 17:30:22 28 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0037lz.r in process_file_group 17:30:22 28 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260037.log 17:30:22 28 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:30:22 28 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0037dz 17:30:22 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0037dz.x00 17:30:22 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0037dz.x01 17:30:22 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0037dz.x02 17:30:22 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0037dz.x03 17:30:22 28 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0037dz.r in process_file_group 17:30:22 28 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [37] 17:30:22 28 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [37] 17:30:22 28 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260037) for profiles 17:30:22 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:30:22 28 Jan 2017 UTC: INFO: QC.py(365): Changed (4/502) 2:4 189 to QC_PROBABLY_BAD because raw temperature spikes 17:30:22 28 Jan 2017 UTC: INFO: QC.py(180): Changed (4/502) 2:4 189 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:30:22 28 Jan 2017 UTC: INFO: QC.py(365): Changed (4/502) 2:4 189 to QC_INTERPOLATED because temperature spikes 17:30:22 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/502) 187:191 to QC_BAD because slow apogee CT flow 17:30:22 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/502) 1:6 to QC_BAD because prior to dive start 17:30:22 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/502) 501 502 to QC_BAD because end of climb 17:30:22 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/502) 1:6 187:191 501 502 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:30:22 28 Jan 2017 UTC: INFO: QC.py(180): Changed (13/502) 1:6 187:191 501 502 to QC_BAD because changed corrected salin implies changed speed 17:30:23 28 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:30:23 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.13 cm/s 17:30:23 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.35 cm/s 17:30:23 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:30:23 28 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (71/502) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:30:23 28 Jan 2017 UTC: INFO: QC.py(180): Changed (3/502) 2:4 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:30:23 28 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (71/502) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:30:23 28 Jan 2017 UTC: INFO: QC.py(180): Changed (3/502) 2:4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:30:23 28 Jan 2017 UTC: INFO: QC.py(180): Changed (13/502) 1:6 187:191 501 502 to QC_BAD because changed salinity implies changed optode oxygen 17:30:23 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:30:23 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:30:23 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 37: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.59% reduction 17:30:23 28 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.37 17:30:23 28 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.37 17:30:23 28 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:30:23 28 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:30:23 28 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:30:23 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:30:23 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:30:35 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 17:30:35 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:30:35 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:30:38 28 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:30:38 28 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:30:38 28 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:30:38 28 Jan 2017 UTC /home/sg626/p6260037.log /home/sg626/p6260037.eng /home/sg626/p6260037.asc /home/sg626/p6260037.pro /home/sg626/p6260037.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:30:38 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:30:38 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:30:38 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 17:30:38 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:30:38 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:30:38 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:30:38 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:30:38 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:30:38 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 17:30:38 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:30:38 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:30:38 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:30:38 28 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:30:38 28 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:30:38 28 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:30:38 28 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:30:38 28 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:30:38 28 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:30:38 28 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:30:38 28 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 17:30:38 28 Jan 2017 UTC 19:23:52 28 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 7078 19:23:52 28 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 19:26:10 28 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 7196 19:26:10 28 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:26:10 28 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:26:10 28 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:26:10 28 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:26:10 28 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170128092610 ] 19:26:10 28 Jan 2017 UTC: INFO: Base.py(1333): PID:7204 19:26:11 28 Jan 2017 UTC: INFO: Base.py(1375): Started processing 19:26:11 28 Jan 2017 UTC 19:26:11 28 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:26:11 28 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:26:11 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:26:11 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:26:11 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:38 calls_made:1 call_cycle:0 19:26:11 28 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:38 calls_made:1 call_cycle:0 2249.0830 -15800.6290 01/28/17 19:22:07 UTC) to sdrifter@soest.hawaii.edu 19:26:11 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:38 calls_made:1 call_cycle:0 19:26:11 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 19:26:11 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:38 calls_made:1 call_cycle:0 19:26:11 28 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:38 calls_made:1 call_cycle:0 2249.0830 -15800.6290 01/28/17 19:22:07 UTC) to seaglider@km.soest.hawaii.edu 19:26:11 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:38 calls_made:1 call_cycle:0 19:26:11 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:26:11 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:38 calls_made:1 call_cycle:0 19:26:11 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:26:11 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:38 calls_made:1 call_cycle:0 19:26:11 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:26:11 28 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:26:12 28 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:26:12 28 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:26:12 28 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:26:12 28 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:26:12 28 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:26:12 28 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:26:12 28 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0038lz 19:26:12 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0038lz.x00 19:26:12 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0038lz.x01 19:26:12 28 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0038lz.r in process_file_group 19:26:12 28 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260038.log 19:26:12 28 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:26:12 28 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0038dz 19:26:12 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0038dz.x00 19:26:12 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0038dz.x01 19:26:12 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0038dz.x02 19:26:12 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0038dz.x03 19:26:12 28 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0038dz.r in process_file_group 19:26:13 28 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [38] 19:26:13 28 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [38] 19:26:13 28 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260038) for profiles 19:26:13 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 19:26:13 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/502) 501 502 to QC_BAD because CT out of water 19:26:13 28 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.048m) 19:26:13 28 Jan 2017 UTC: INFO: QC.py(365): Changed (1/502) 5 to QC_PROBABLY_BAD because raw temperature spikes 19:26:13 28 Jan 2017 UTC: INFO: QC.py(377): Changed (2/502) 501 502 to QC_BAD because raw salinity below bound 19:26:13 28 Jan 2017 UTC: INFO: QC.py(180): Changed (1/502) 5 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:26:13 28 Jan 2017 UTC: INFO: QC.py(365): Changed (1/502) 5 to QC_INTERPOLATED because temperature spikes 19:26:13 28 Jan 2017 UTC: INFO: QC.py(377): Changed (2/502) 501 502 to QC_BAD because salinity below bound 19:26:13 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/502) 185:190 to QC_BAD because slow apogee CT flow 19:26:13 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/502) 1:6 to QC_BAD because prior to dive start 19:26:13 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/502) 1:6 185:190 501 502 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:26:13 28 Jan 2017 UTC: INFO: QC.py(180): Changed (14/502) 1:6 185:190 501 502 to QC_BAD because changed corrected salin implies changed speed 19:26:13 28 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:26:13 28 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 38 interp_salinity data_points in_between 292 297 % suspect thermal-inertia points 295:297 19:26:13 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.77 cm/s 19:26:13 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.15 cm/s 19:26:13 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:26:13 28 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (71/502) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:26:13 28 Jan 2017 UTC: INFO: QC.py(180): Changed (1/502) 5 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 19:26:13 28 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (71/502) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 19:26:13 28 Jan 2017 UTC: INFO: QC.py(180): Changed (1/502) 5 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 19:26:13 28 Jan 2017 UTC: INFO: QC.py(180): Changed (14/502) 1:6 185:190 501 502 to QC_BAD because changed salinity implies changed optode oxygen 19:26:13 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:26:13 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 19:26:14 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 38: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.79% reduction 19:26:14 28 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.38 19:26:14 28 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.38 19:26:14 28 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:26:14 28 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:26:14 28 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:26:14 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 19:26:14 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 19:26:26 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 19:26:26 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 19:26:26 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 19:26:28 28 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:26:28 28 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:26:28 28 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:26:28 28 Jan 2017 UTC /home/sg626/p6260038.log /home/sg626/p6260038.eng /home/sg626/p6260038.asc /home/sg626/p6260038.pro /home/sg626/p6260038.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 19:26:28 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:26:28 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:26:28 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 19:26:28 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:26:28 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:26:28 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:26:28 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:26:28 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:26:28 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 19:26:28 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:26:28 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:26:28 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:26:28 28 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:26:28 28 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:26:28 28 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:26:28 28 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:26:28 28 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:26:28 28 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:26:28 28 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:26:28 28 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 19:26:28 28 Jan 2017 UTC 21:24:04 28 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 10975 21:24:04 28 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 21:26:29 28 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 11135 21:26:29 28 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:26:29 28 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:26:29 28 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:26:29 28 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:26:29 28 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170128112628 ] 21:26:29 28 Jan 2017 UTC: INFO: Base.py(1333): PID:11143 21:26:29 28 Jan 2017 UTC: INFO: Base.py(1375): Started processing 21:26:29 28 Jan 2017 UTC 21:26:29 28 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:26:29 28 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:26:29 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:26:29 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:26:29 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:39 calls_made:1 call_cycle:0 21:26:29 28 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:39 calls_made:1 call_cycle:0 2248.4230 -15800.5940 01/28/17 21:22:16 UTC) to sdrifter@soest.hawaii.edu 21:26:29 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:39 calls_made:1 call_cycle:0 21:26:29 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 21:26:29 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:39 calls_made:1 call_cycle:0 21:26:29 28 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:39 calls_made:1 call_cycle:0 2248.4230 -15800.5940 01/28/17 21:22:16 UTC) to seaglider@km.soest.hawaii.edu 21:26:29 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:39 calls_made:1 call_cycle:0 21:26:29 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:26:29 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:39 calls_made:1 call_cycle:0 21:26:29 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:26:29 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:39 calls_made:1 call_cycle:0 21:26:29 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:26:29 28 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:26:30 28 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:26:31 28 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:26:31 28 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:26:31 28 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:26:31 28 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:26:31 28 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:26:31 28 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0039lz 21:26:31 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0039lz.x00 21:26:31 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0039lz.x01 21:26:31 28 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0039lz.r in process_file_group 21:26:31 28 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260039.log 21:26:31 28 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:26:31 28 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0039dz 21:26:31 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0039dz.x00 21:26:31 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0039dz.x01 21:26:31 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0039dz.x02 21:26:31 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0039dz.x03 21:26:31 28 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0039dz.r in process_file_group 21:26:31 28 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [39] 21:26:31 28 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [39] 21:26:31 28 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260039) for profiles 21:26:31 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:26:31 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/516) 515 516 to QC_BAD because CT out of water 21:26:31 28 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.024m) 21:26:31 28 Jan 2017 UTC: INFO: QC.py(365): Changed (4/516) 4 194 514 515 to QC_PROBABLY_BAD because raw temperature spikes 21:26:31 28 Jan 2017 UTC: INFO: QC.py(377): Changed (2/516) 515 516 to QC_BAD because raw salinity below bound 21:26:31 28 Jan 2017 UTC: INFO: QC.py(180): Changed (3/516) 4 194 514 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:26:31 28 Jan 2017 UTC: INFO: QC.py(365): Changed (4/516) 4 194 514 515 to QC_INTERPOLATED because temperature spikes 21:26:31 28 Jan 2017 UTC: INFO: QC.py(377): Changed (2/516) 515 516 to QC_BAD because salinity below bound 21:26:31 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/516) 192:196 to QC_BAD because slow apogee CT flow 21:26:31 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/516) 1:6 to QC_BAD because prior to dive start 21:26:31 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/516) 1:6 192:196 515 516 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:26:31 28 Jan 2017 UTC: INFO: QC.py(180): Changed (13/516) 1:6 192:196 515 516 to QC_BAD because changed corrected salin implies changed speed 21:26:32 28 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:26:32 28 Jan 2017 UTC: INFO: QC.py(180): Changed (1/516) 514 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 21:26:32 28 Jan 2017 UTC: INFO: QC.py(180): Changed (1/516) 514 to QC_INTERPOLATED because changed corrected temp implies changed speed 21:26:32 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.74 cm/s 21:26:32 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.38 cm/s 21:26:32 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:26:32 28 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (70/516) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:26:32 28 Jan 2017 UTC: INFO: QC.py(180): Changed (3/516) 4 514 515 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:26:32 28 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (70/516) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:26:32 28 Jan 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/516) 516 to QC_BAD because bad aa4330 oyxgen 21:26:32 28 Jan 2017 UTC: INFO: QC.py(180): Changed (3/516) 4 514 515 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:26:32 28 Jan 2017 UTC: INFO: QC.py(180): Changed (12/516) 1:6 192:196 515 to QC_BAD because changed salinity implies changed optode oxygen 21:26:32 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:26:32 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:26:32 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 39: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.52% reduction 21:26:32 28 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.39 21:26:32 28 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.39 21:26:32 28 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:26:32 28 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:26:32 28 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:26:32 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:26:32 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 21:26:45 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 21:26:45 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 21:26:45 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 21:26:48 28 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:26:48 28 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:26:48 28 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:26:48 28 Jan 2017 UTC /home/sg626/p6260039.log /home/sg626/p6260039.eng /home/sg626/p6260039.asc /home/sg626/p6260039.pro /home/sg626/p6260039.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 21:26:48 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:26:48 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:26:48 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 21:26:48 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:26:48 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:26:48 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:26:48 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:26:48 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:26:48 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 21:26:48 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:26:48 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:26:48 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:26:48 28 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:26:48 28 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:26:48 28 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:26:48 28 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:26:48 28 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:26:48 28 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:26:48 28 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:26:48 28 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 21:26:48 28 Jan 2017 UTC 23:23:33 28 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 16895 23:23:33 28 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 23:26:04 28 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 17047 23:26:04 28 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:26:04 28 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:26:04 28 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:26:04 28 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:26:04 28 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170128132603 ] 23:26:04 28 Jan 2017 UTC: INFO: Base.py(1333): PID:17055 23:26:04 28 Jan 2017 UTC: INFO: Base.py(1375): Started processing 23:26:04 28 Jan 2017 UTC 23:26:04 28 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:26:04 28 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:26:04 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:26:04 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:26:04 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:40 calls_made:1 call_cycle:0 23:26:04 28 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:40 calls_made:1 call_cycle:0 2247.5860 -15800.8680 01/28/17 23:21:44 UTC) to sdrifter@soest.hawaii.edu 23:26:04 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:40 calls_made:1 call_cycle:0 23:26:04 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 23:26:04 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:40 calls_made:1 call_cycle:0 23:26:04 28 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:40 calls_made:1 call_cycle:0 2247.5860 -15800.8680 01/28/17 23:21:44 UTC) to seaglider@km.soest.hawaii.edu 23:26:04 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:40 calls_made:1 call_cycle:0 23:26:04 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:26:04 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:40 calls_made:1 call_cycle:0 23:26:04 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:26:04 28 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:40 calls_made:1 call_cycle:0 23:26:04 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:26:04 28 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:26:05 28 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:26:05 28 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:26:05 28 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:26:05 28 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:26:05 28 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:26:05 28 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:26:06 28 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0040lz 23:26:06 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0040lz.x00 23:26:06 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0040lz.x01 23:26:06 28 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0040lz.r in process_file_group 23:26:06 28 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260040.log 23:26:06 28 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:26:06 28 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0040dz 23:26:06 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0040dz.x00 23:26:06 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0040dz.x01 23:26:06 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0040dz.x02 23:26:06 28 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0040dz.x03 23:26:06 28 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0040dz.r in process_file_group 23:26:06 28 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [40] 23:26:06 28 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [40] 23:26:06 28 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260040) for profiles 23:26:06 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 23:26:06 28 Jan 2017 UTC: INFO: QC.py(365): Changed (3/502) 2:4 to QC_PROBABLY_BAD because raw temperature spikes 23:26:06 28 Jan 2017 UTC: INFO: QC.py(408): Changed (1/502) 3 to QC_PROBABLY_BAD because raw conductivity spikes 23:26:06 28 Jan 2017 UTC: INFO: QC.py(180): Changed (3/502) 2:4 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 23:26:06 28 Jan 2017 UTC: INFO: QC.py(365): Changed (3/502) 2:4 to QC_INTERPOLATED because temperature spikes 23:26:06 28 Jan 2017 UTC: INFO: QC.py(408): Changed (1/502) 3 to QC_INTERPOLATED because conductivity spikes 23:26:06 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/502) 196:200 to QC_BAD because slow apogee CT flow 23:26:06 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/502) 1:6 to QC_BAD because prior to dive start 23:26:06 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/502) 1:6 196:200 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 23:26:06 28 Jan 2017 UTC: INFO: QC.py(180): Changed (11/502) 1:6 196:200 to QC_BAD because changed corrected salin implies changed speed 23:26:06 28 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 23:26:06 28 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 40 interp_salinity data_points in_between 248 252 % suspect thermal-inertia points 249 250 23:26:06 28 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 40 interp_salinity data_points in_between 383 390 % suspect thermal-inertia points 385 23:26:06 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.37 cm/s 23:26:06 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.52 cm/s 23:26:06 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 23:26:07 28 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (72/502) 153:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 23:26:07 28 Jan 2017 UTC: INFO: QC.py(180): Changed (3/502) 2:4 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 23:26:07 28 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (72/502) 153:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 23:26:07 28 Jan 2017 UTC: INFO: QC.py(180): Changed (3/502) 2:4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 23:26:07 28 Jan 2017 UTC: INFO: QC.py(180): Changed (11/502) 1:6 196:200 to QC_BAD because changed salinity implies changed optode oxygen 23:26:07 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 23:26:07 28 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 23:26:07 28 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 23:26:07 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 40: Data set size for profile, binned and kkyy files reduced by 11 points, a 2.19% reduction 23:26:07 28 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.40 23:26:07 28 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.40 23:26:07 28 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:26:07 28 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:26:07 28 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:26:07 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 23:26:07 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 23:26:20 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 23:26:20 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 23:26:20 28 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 23:26:22 28 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:26:22 28 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:26:22 28 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:26:22 28 Jan 2017 UTC /home/sg626/p6260040.log /home/sg626/p6260040.eng /home/sg626/p6260040.asc /home/sg626/p6260040.pro /home/sg626/p6260040.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 23:26:22 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:26:22 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:26:22 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 23:26:22 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:26:22 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:26:22 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:26:22 28 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:26:22 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:26:22 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 23:26:22 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:26:22 28 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:26:22 28 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:26:22 28 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:26:22 28 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:26:22 28 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:26:22 28 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:26:22 28 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:26:22 28 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:26:22 28 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:26:22 28 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 23:26:22 28 Jan 2017 UTC 01:21:55 29 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 23024 01:21:55 29 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:24:09 29 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 23172 01:24:09 29 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:24:09 29 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:24:09 29 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:24:09 29 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:24:09 29 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170128152409 ] 01:24:09 29 Jan 2017 UTC: INFO: Base.py(1333): PID:23180 01:24:10 29 Jan 2017 UTC: INFO: Base.py(1375): Started processing 01:24:10 29 Jan 2017 UTC 01:24:10 29 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:24:10 29 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:24:10 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:24:10 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:24:10 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:41 calls_made:1 call_cycle:0 01:24:10 29 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:41 calls_made:1 call_cycle:0 2247.0220 -15800.9990 01/29/17 01:20:14 UTC) to sdrifter@soest.hawaii.edu 01:24:10 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:41 calls_made:1 call_cycle:0 01:24:10 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 01:24:10 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:41 calls_made:1 call_cycle:0 01:24:10 29 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:41 calls_made:1 call_cycle:0 2247.0220 -15800.9990 01/29/17 01:20:14 UTC) to seaglider@km.soest.hawaii.edu 01:24:10 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:41 calls_made:1 call_cycle:0 01:24:10 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:24:10 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:41 calls_made:1 call_cycle:0 01:24:10 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:24:10 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:41 calls_made:1 call_cycle:0 01:24:10 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:24:10 29 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:24:11 29 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:24:11 29 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:24:11 29 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:24:11 29 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:24:11 29 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:24:11 29 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:24:11 29 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0041lz 01:24:11 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0041lz.x00 01:24:11 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0041lz.x01 01:24:11 29 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0041lz.r in process_file_group 01:24:11 29 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260041.log 01:24:11 29 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:24:11 29 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0041dz 01:24:11 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0041dz.x00 01:24:11 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0041dz.x01 01:24:11 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0041dz.x02 01:24:11 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0041dz.x03 01:24:11 29 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0041dz.r in process_file_group 01:24:12 29 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [41] 01:24:12 29 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [41] 01:24:12 29 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260041) for profiles 01:24:12 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:24:12 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/499) 499 to QC_BAD because CT out of water 01:24:12 29 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.086m) 01:24:12 29 Jan 2017 UTC: INFO: QC.py(365): Changed (2/499) 2 498 to QC_PROBABLY_BAD because raw temperature spikes 01:24:12 29 Jan 2017 UTC: INFO: QC.py(377): Changed (1/499) 499 to QC_BAD because raw salinity below bound 01:24:12 29 Jan 2017 UTC: INFO: QC.py(408): Changed (2/499) 387 388 to QC_PROBABLY_BAD because raw conductivity spikes 01:24:12 29 Jan 2017 UTC: INFO: QC.py(180): Changed (2/499) 2 498 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:24:12 29 Jan 2017 UTC: INFO: QC.py(180): Changed (2/499) 387 388 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 01:24:12 29 Jan 2017 UTC: INFO: QC.py(365): Changed (2/499) 2 498 to QC_INTERPOLATED because temperature spikes 01:24:12 29 Jan 2017 UTC: INFO: QC.py(377): Changed (1/499) 499 to QC_BAD because salinity below bound 01:24:12 29 Jan 2017 UTC: INFO: QC.py(408): Changed (2/499) 387 388 to QC_INTERPOLATED because conductivity spikes 01:24:12 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/499) 196:200 to QC_BAD because slow apogee CT flow 01:24:12 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/499) 1:6 to QC_BAD because prior to dive start 01:24:12 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/499) 1:6 196:200 499 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:24:12 29 Jan 2017 UTC: INFO: QC.py(180): Changed (12/499) 1:6 196:200 499 to QC_BAD because changed corrected salin implies changed speed 01:24:12 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:24:12 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 41 interp_salinity data_points in_between 386 393 % suspect thermal-inertia points 386:393 01:24:12 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 41 interp_salinity data_points in_between 395 414 % suspect thermal-inertia points 395 01:24:12 29 Jan 2017 UTC: INFO: QC.py(180): Changed (1/499) 498 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 01:24:12 29 Jan 2017 UTC: INFO: QC.py(180): Changed (2/499) 387 388 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 01:24:12 29 Jan 2017 UTC: INFO: QC.py(180): Changed (1/499) 498 to QC_INTERPOLATED because changed corrected temp implies changed speed 01:24:12 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.56 cm/s 01:24:12 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.68 cm/s 01:24:12 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:24:12 29 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (72/499) 155 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:24:12 29 Jan 2017 UTC: INFO: QC.py(180): Changed (2/499) 2 498 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 01:24:13 29 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (72/499) 155 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 01:24:13 29 Jan 2017 UTC: INFO: QC.py(180): Changed (2/499) 2 498 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 01:24:13 29 Jan 2017 UTC: INFO: QC.py(180): Changed (12/499) 1:6 196:200 499 to QC_BAD because changed salinity implies changed optode oxygen 01:24:13 29 Jan 2017 UTC: INFO: QC.py(180): Changed (2/499) 387 388 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 01:24:13 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:24:13 29 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:24:13 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:24:13 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 41: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.40% reduction 01:24:13 29 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.41 01:24:13 29 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:24:13 29 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:24:13 29 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:24:13 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:24:13 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 01:24:26 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 01:24:26 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 01:24:26 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 01:24:29 29 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:24:29 29 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:24:29 29 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:24:29 29 Jan 2017 UTC /home/sg626/p6260041.log /home/sg626/p6260041.eng /home/sg626/p6260041.asc /home/sg626/p6260041.pro /home/sg626/p6260041.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 01:24:29 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:24:29 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:24:29 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 01:24:29 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:24:29 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:24:29 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:24:29 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:24:29 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:24:29 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 01:24:29 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:24:29 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:24:29 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:24:29 29 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:24:29 29 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:24:29 29 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:24:29 29 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:24:29 29 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:24:29 29 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:24:29 29 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:24:29 29 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 01:24:29 29 Jan 2017 UTC 03:25:07 29 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 29237 03:25:07 29 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:27:22 29 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 29385 03:27:22 29 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:27:22 29 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:27:22 29 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:27:22 29 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:27:22 29 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170128172722 ] 03:27:22 29 Jan 2017 UTC: INFO: Base.py(1333): PID:29392 03:27:22 29 Jan 2017 UTC: INFO: Base.py(1375): Started processing 03:27:22 29 Jan 2017 UTC 03:27:22 29 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:27:23 29 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:27:23 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:27:23 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:27:23 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:42 calls_made:1 call_cycle:0 03:27:23 29 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:42 calls_made:1 call_cycle:0 2247.0180 -15800.7420 01/29/17 03:23:20 UTC) to sdrifter@soest.hawaii.edu 03:27:23 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:42 calls_made:1 call_cycle:0 03:27:23 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 03:27:23 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:42 calls_made:1 call_cycle:0 03:27:23 29 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:42 calls_made:1 call_cycle:0 2247.0180 -15800.7420 01/29/17 03:23:20 UTC) to seaglider@km.soest.hawaii.edu 03:27:23 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:42 calls_made:1 call_cycle:0 03:27:23 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:27:23 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:42 calls_made:1 call_cycle:0 03:27:23 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:27:23 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:42 calls_made:1 call_cycle:0 03:27:23 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:27:23 29 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:27:24 29 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:27:24 29 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:27:24 29 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:27:24 29 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:27:24 29 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:27:24 29 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:27:24 29 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0042lz 03:27:24 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0042lz.x00 03:27:24 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0042lz.x01 03:27:24 29 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0042lz.r in process_file_group 03:27:24 29 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260042.log 03:27:24 29 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:27:24 29 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0042dz 03:27:24 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0042dz.x00 03:27:24 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0042dz.x01 03:27:24 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0042dz.x02 03:27:24 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0042dz.x03 03:27:24 29 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0042dz.r in process_file_group 03:27:25 29 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [42] 03:27:25 29 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [42] 03:27:25 29 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260042) for profiles 03:27:25 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 03:27:25 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/525) 522 524 to QC_BAD because CT out of water 03:27:25 29 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.008m) 03:27:25 29 Jan 2017 UTC: INFO: QC.py(365): Changed (5/525) 2 3 197 522 524 to QC_PROBABLY_BAD because raw temperature spikes 03:27:25 29 Jan 2017 UTC: INFO: QC.py(377): Changed (1/525) 523 to QC_BAD because raw salinity below bound 03:27:25 29 Jan 2017 UTC: INFO: QC.py(388): Changed (1/525) 523 to QC_BAD because bad raw salinity indicates raw conductivity issues 03:27:25 29 Jan 2017 UTC: INFO: QC.py(408): Changed (2/525) 4 197 to QC_PROBABLY_BAD because raw conductivity spikes 03:27:25 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/525) 525 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 03:27:25 29 Jan 2017 UTC: INFO: QC.py(180): Changed (5/525) 2 3 197 522 524 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 03:27:25 29 Jan 2017 UTC: INFO: QC.py(180): Changed (1/525) 4 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 03:27:25 29 Jan 2017 UTC: INFO: QC.py(180): Changed (3/525) 522 524 525 to QC_BAD because changed raw cond implies changed raw salinity 03:27:25 29 Jan 2017 UTC: INFO: QC.py(365): Changed (5/525) 2 3 197 522 524 to QC_INTERPOLATED because temperature spikes 03:27:25 29 Jan 2017 UTC: INFO: QC.py(377): Changed (1/525) 523 to QC_BAD because salinity below bound 03:27:25 29 Jan 2017 UTC: INFO: QC.py(388): Changed (1/525) 523 to QC_BAD because bad salinity indicates conductivity issues 03:27:25 29 Jan 2017 UTC: INFO: QC.py(408): Changed (2/525) 4 197 to QC_INTERPOLATED because conductivity spikes 03:27:25 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/525) 525 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 03:27:25 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/525) 195:199 to QC_BAD because slow apogee CT flow 03:27:25 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/525) 1:6 to QC_BAD because prior to dive start 03:27:25 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/525) 1:6 195:199 522:525 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:27:25 29 Jan 2017 UTC: INFO: QC.py(180): Changed (15/525) 1:6 195:199 522:525 to QC_BAD because changed corrected salin implies changed speed 03:27:25 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 03:27:25 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 42 interp_salinity data_points in_between 68 75 % suspect thermal-inertia points 73 74 03:27:25 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 42 interp_salinity data_points in_between 284 287 % suspect thermal-inertia points 286 287 03:27:25 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.99 cm/s 03:27:25 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.45 cm/s 03:27:25 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:27:25 29 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (76/525) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:27:25 29 Jan 2017 UTC: INFO: QC.py(180): Changed (4/525) 2 3 522 524 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:27:25 29 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (76/525) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 03:27:25 29 Jan 2017 UTC: INFO: QC.py(180): Changed (4/525) 2 3 522 524 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 03:27:25 29 Jan 2017 UTC: INFO: QC.py(180): Changed (15/525) 1:6 195:199 522:525 to QC_BAD because changed salinity implies changed optode oxygen 03:27:25 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:27:25 29 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:27:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 03:27:26 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 42: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.86% reduction 03:27:26 29 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.42 03:27:26 29 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:27:26 29 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:27:26 29 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:27:26 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 03:27:26 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 03:27:39 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 03:27:39 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 03:27:39 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 03:27:42 29 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:27:42 29 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:27:42 29 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:27:42 29 Jan 2017 UTC /home/sg626/p6260042.log /home/sg626/p6260042.eng /home/sg626/p6260042.asc /home/sg626/p6260042.pro /home/sg626/p6260042.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 03:27:42 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:27:42 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:27:42 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 03:27:42 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:27:42 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:27:42 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:27:42 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:27:42 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:27:42 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 03:27:42 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:27:42 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:27:42 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:27:42 29 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:27:42 29 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:27:42 29 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:27:42 29 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:27:42 29 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:27:42 29 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:27:42 29 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:27:42 29 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 03:27:42 29 Jan 2017 UTC 05:24:31 29 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 4027 05:24:31 29 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:26:51 29 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 4229 05:26:51 29 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:26:51 29 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:26:51 29 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:26:51 29 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:26:51 29 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170128192650 ] 05:26:51 29 Jan 2017 UTC: INFO: Base.py(1333): PID:4237 05:26:51 29 Jan 2017 UTC: INFO: Base.py(1375): Started processing 05:26:51 29 Jan 2017 UTC 05:26:51 29 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:26:51 29 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:26:51 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:26:51 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:26:51 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:43 calls_made:1 call_cycle:0 05:26:51 29 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:43 calls_made:1 call_cycle:0 2247.2210 -15800.2420 01/29/17 05:22:32 UTC) to sdrifter@soest.hawaii.edu 05:26:51 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:43 calls_made:1 call_cycle:0 05:26:51 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 05:26:51 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:43 calls_made:1 call_cycle:0 05:26:51 29 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:43 calls_made:1 call_cycle:0 2247.2210 -15800.2420 01/29/17 05:22:32 UTC) to seaglider@km.soest.hawaii.edu 05:26:51 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:43 calls_made:1 call_cycle:0 05:26:51 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:26:51 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:43 calls_made:1 call_cycle:0 05:26:51 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:26:51 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:43 calls_made:1 call_cycle:0 05:26:51 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:26:51 29 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:26:53 29 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:26:53 29 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:26:53 29 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:26:53 29 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:26:53 29 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:26:53 29 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:26:53 29 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0043lz 05:26:53 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0043lz.x00 05:26:53 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0043lz.x01 05:26:53 29 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0043lz.r in process_file_group 05:26:53 29 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260043.log 05:26:53 29 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:26:53 29 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0043dz 05:26:53 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0043dz.x00 05:26:53 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0043dz.x01 05:26:53 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0043dz.x02 05:26:53 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0043dz.x03 05:26:53 29 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0043dz.r in process_file_group 05:26:53 29 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [43] 05:26:53 29 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [43] 05:26:53 29 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260043) for profiles 05:26:53 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:26:53 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/490) 488:490 to QC_BAD because CT out of water 05:26:53 29 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.094m) 05:26:53 29 Jan 2017 UTC: INFO: QC.py(365): Changed (3/490) 2:4 to QC_PROBABLY_BAD because raw temperature spikes 05:26:53 29 Jan 2017 UTC: INFO: QC.py(377): Changed (3/490) 488:490 to QC_BAD because raw salinity below bound 05:26:53 29 Jan 2017 UTC: INFO: QC.py(180): Changed (3/490) 2:4 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:26:53 29 Jan 2017 UTC: INFO: QC.py(365): Changed (3/490) 2:4 to QC_INTERPOLATED because temperature spikes 05:26:53 29 Jan 2017 UTC: INFO: QC.py(377): Changed (3/490) 488:490 to QC_BAD because salinity below bound 05:26:53 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/490) 189:193 to QC_BAD because slow apogee CT flow 05:26:53 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/490) 1:6 to QC_BAD because prior to dive start 05:26:53 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/490) 1:6 189:193 488:490 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:26:53 29 Jan 2017 UTC: INFO: QC.py(180): Changed (14/490) 1:6 189:193 488:490 to QC_BAD because changed corrected salin implies changed speed 05:26:54 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:26:54 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 43 interp_salinity data_points in_between 372 375 % suspect thermal-inertia points 374 05:26:54 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.54 cm/s 05:26:54 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.39 cm/s 05:26:54 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:26:54 29 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (74/490) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:26:54 29 Jan 2017 UTC: INFO: QC.py(180): Changed (3/490) 2:4 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:26:54 29 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (74/490) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:26:54 29 Jan 2017 UTC: INFO: QC.py(180): Changed (3/490) 2:4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:26:54 29 Jan 2017 UTC: INFO: QC.py(180): Changed (14/490) 1:6 189:193 488:490 to QC_BAD because changed salinity implies changed optode oxygen 05:26:54 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:26:54 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 05:26:54 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 43: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.86% reduction 05:26:54 29 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.43 05:26:54 29 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:26:54 29 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:26:54 29 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:26:54 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 05:26:54 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 05:27:08 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 05:27:08 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 05:27:08 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 05:27:11 29 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:27:11 29 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:27:11 29 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:27:11 29 Jan 2017 UTC /home/sg626/p6260043.log /home/sg626/p6260043.eng /home/sg626/p6260043.asc /home/sg626/p6260043.pro /home/sg626/p6260043.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 05:27:11 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:27:11 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:27:11 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 05:27:11 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:27:11 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:27:11 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:27:11 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:27:11 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:27:11 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 05:27:11 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:27:11 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:27:11 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:27:11 29 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:27:11 29 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:27:11 29 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:27:11 29 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:27:11 29 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:27:11 29 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:27:11 29 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:27:11 29 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 05:27:11 29 Jan 2017 UTC 07:27:51 29 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 12878 07:27:51 29 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:30:22 29 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 13230 07:30:22 29 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:30:22 29 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:30:22 29 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:30:22 29 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:30:22 29 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170128213021 ] 07:30:22 29 Jan 2017 UTC: INFO: Base.py(1333): PID:13238 07:30:22 29 Jan 2017 UTC: INFO: Base.py(1375): Started processing 07:30:22 29 Jan 2017 UTC 07:30:22 29 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:30:22 29 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:30:22 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:30:22 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:30:22 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:44 calls_made:1 call_cycle:0 07:30:22 29 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:44 calls_made:1 call_cycle:0 2246.8020 -15800.0620 01/29/17 07:25:48 UTC) to sdrifter@soest.hawaii.edu 07:30:22 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:44 calls_made:1 call_cycle:0 07:30:22 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 07:30:22 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:44 calls_made:1 call_cycle:0 07:30:22 29 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:44 calls_made:1 call_cycle:0 2246.8020 -15800.0620 01/29/17 07:25:48 UTC) to seaglider@km.soest.hawaii.edu 07:30:22 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:44 calls_made:1 call_cycle:0 07:30:22 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:30:22 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:44 calls_made:1 call_cycle:0 07:30:22 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:30:22 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:44 calls_made:1 call_cycle:0 07:30:22 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:30:22 29 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:30:23 29 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:30:24 29 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:30:24 29 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:30:24 29 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:30:24 29 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:30:24 29 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:30:24 29 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0044lz 07:30:24 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0044lz.x00 07:30:24 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0044lz.x01 07:30:24 29 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0044lz.r in process_file_group 07:30:24 29 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260044.log 07:30:24 29 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:30:24 29 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0044dz 07:30:24 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0044dz.x00 07:30:24 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0044dz.x01 07:30:24 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0044dz.x02 07:30:24 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0044dz.x03 07:30:24 29 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0044dz.r in process_file_group 07:30:24 29 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [44] 07:30:24 29 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [44] 07:30:24 29 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260044) for profiles 07:30:24 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 07:30:24 29 Jan 2017 UTC: INFO: QC.py(365): Changed (1/536) 4 to QC_PROBABLY_BAD because raw temperature spikes 07:30:24 29 Jan 2017 UTC: INFO: QC.py(377): Changed (1/536) 536 to QC_BAD because raw salinity below bound 07:30:24 29 Jan 2017 UTC: INFO: QC.py(388): Changed (1/536) 536 to QC_BAD because bad raw salinity indicates raw conductivity issues 07:30:24 29 Jan 2017 UTC: INFO: QC.py(180): Changed (1/536) 4 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:30:24 29 Jan 2017 UTC: INFO: QC.py(365): Changed (1/536) 4 to QC_INTERPOLATED because temperature spikes 07:30:24 29 Jan 2017 UTC: INFO: QC.py(377): Changed (1/536) 536 to QC_BAD because salinity below bound 07:30:24 29 Jan 2017 UTC: INFO: QC.py(388): Changed (1/536) 536 to QC_BAD because bad salinity indicates conductivity issues 07:30:24 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/536) 193:197 to QC_BAD because slow apogee CT flow 07:30:24 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/536) 1:6 to QC_BAD because prior to dive start 07:30:24 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/536) 1:6 193:197 536 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:30:24 29 Jan 2017 UTC: INFO: QC.py(180): Changed (12/536) 1:6 193:197 536 to QC_BAD because changed corrected salin implies changed speed 07:30:25 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:30:25 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 44 interp_salinity data_points in_between 340 344 % suspect thermal-inertia points 343 344 07:30:25 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.86 cm/s 07:30:25 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.35 cm/s 07:30:25 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:30:25 29 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (73/536) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:30:25 29 Jan 2017 UTC: INFO: QC.py(180): Changed (1/536) 4 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:30:25 29 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (73/536) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 07:30:25 29 Jan 2017 UTC: INFO: QC.py(180): Changed (1/536) 4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:30:25 29 Jan 2017 UTC: INFO: QC.py(180): Changed (12/536) 1:6 193:197 536 to QC_BAD because changed salinity implies changed optode oxygen 07:30:25 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:30:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 07:30:25 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 44: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.24% reduction 07:30:25 29 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.44 07:30:25 29 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:30:25 29 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:30:25 29 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:30:25 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 07:30:25 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:30:39 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 07:30:39 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:30:39 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:30:42 29 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:30:42 29 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:30:42 29 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:30:42 29 Jan 2017 UTC /home/sg626/p6260044.log /home/sg626/p6260044.eng /home/sg626/p6260044.asc /home/sg626/p6260044.pro /home/sg626/p6260044.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:30:42 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:30:42 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:30:42 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 07:30:42 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:30:42 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:30:42 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:30:42 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:30:42 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:30:42 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 07:30:42 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:30:42 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:30:42 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:30:42 29 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:30:42 29 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:30:42 29 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:30:42 29 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:30:42 29 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:30:42 29 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:30:42 29 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:30:42 29 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 07:30:42 29 Jan 2017 UTC 09:30:23 29 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 20668 09:30:23 29 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:33:06 29 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 20840 09:33:06 29 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:33:06 29 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:33:06 29 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:33:06 29 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:33:06 29 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170128233305 ] 09:33:06 29 Jan 2017 UTC: INFO: Base.py(1333): PID:20848 09:33:06 29 Jan 2017 UTC: INFO: Base.py(1375): Started processing 09:33:06 29 Jan 2017 UTC 09:33:06 29 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:33:06 29 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:33:06 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:33:06 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:33:06 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:45 calls_made:1 call_cycle:0 09:33:06 29 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:45 calls_made:1 call_cycle:0 2246.4500 -15759.9940 01/29/17 09:28:34 UTC) to sdrifter@soest.hawaii.edu 09:33:06 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:45 calls_made:1 call_cycle:0 09:33:06 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 09:33:06 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:45 calls_made:1 call_cycle:0 09:33:06 29 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:45 calls_made:1 call_cycle:0 2246.4500 -15759.9940 01/29/17 09:28:34 UTC) to seaglider@km.soest.hawaii.edu 09:33:06 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:45 calls_made:1 call_cycle:0 09:33:06 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:33:06 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:45 calls_made:1 call_cycle:0 09:33:06 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:33:06 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:45 calls_made:1 call_cycle:0 09:33:06 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:33:06 29 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:33:08 29 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:33:08 29 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:33:08 29 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:33:08 29 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:33:08 29 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:33:08 29 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:33:08 29 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0045lz 09:33:08 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0045lz.x00 09:33:08 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0045lz.x01 09:33:08 29 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0045lz.r in process_file_group 09:33:08 29 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260045.log 09:33:08 29 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:33:08 29 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0045dz 09:33:08 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0045dz.x00 09:33:08 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0045dz.x01 09:33:08 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0045dz.x02 09:33:08 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0045dz.x03 09:33:08 29 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0045dz.r in process_file_group 09:33:08 29 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [45] 09:33:08 29 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [45] 09:33:08 29 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260045) for profiles 09:33:08 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 09:33:08 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/534) 534 to QC_BAD because CT out of water 09:33:08 29 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.025m) 09:33:08 29 Jan 2017 UTC: INFO: QC.py(365): Changed (3/534) 2 3 533 to QC_PROBABLY_BAD because raw temperature spikes 09:33:08 29 Jan 2017 UTC: INFO: QC.py(377): Changed (1/534) 534 to QC_BAD because raw salinity below bound 09:33:08 29 Jan 2017 UTC: INFO: QC.py(408): Changed (1/534) 2 to QC_PROBABLY_BAD because raw conductivity spikes 09:33:08 29 Jan 2017 UTC: INFO: QC.py(180): Changed (3/534) 2 3 533 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 09:33:08 29 Jan 2017 UTC: INFO: QC.py(365): Changed (3/534) 2 3 533 to QC_INTERPOLATED because temperature spikes 09:33:08 29 Jan 2017 UTC: INFO: QC.py(377): Changed (1/534) 534 to QC_BAD because salinity below bound 09:33:08 29 Jan 2017 UTC: INFO: QC.py(408): Changed (1/534) 2 to QC_INTERPOLATED because conductivity spikes 09:33:08 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/534) 187:191 to QC_BAD because slow apogee CT flow 09:33:08 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/534) 1:6 to QC_BAD because prior to dive start 09:33:08 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (3/534) 531:533 to QC_BAD because end of climb 09:33:08 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/534) 1:6 187:191 531:534 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:33:08 29 Jan 2017 UTC: INFO: QC.py(180): Changed (15/534) 1:6 187:191 531:534 to QC_BAD because changed corrected salin implies changed speed 09:33:09 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:33:09 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 45 interp_salinity data_points in_between 399 400 % suspect thermal-inertia points 399 400 09:33:09 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.37 cm/s 09:33:09 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.46 cm/s 09:33:09 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:33:09 29 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (72/534) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:33:09 29 Jan 2017 UTC: INFO: QC.py(180): Changed (3/534) 2 3 533 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:33:09 29 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (72/534) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 09:33:09 29 Jan 2017 UTC: INFO: QC.py(180): Changed (3/534) 2 3 533 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:33:09 29 Jan 2017 UTC: INFO: QC.py(180): Changed (15/534) 1:6 187:191 531:534 to QC_BAD because changed salinity implies changed optode oxygen 09:33:09 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:33:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 09:33:09 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 45: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.81% reduction 09:33:09 29 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.45 09:33:09 29 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:33:09 29 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:33:09 29 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:33:09 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 09:33:09 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 09:33:24 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 09:33:24 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 09:33:24 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 09:33:27 29 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:33:27 29 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:33:27 29 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:33:27 29 Jan 2017 UTC /home/sg626/p6260045.log /home/sg626/p6260045.eng /home/sg626/p6260045.asc /home/sg626/p6260045.pro /home/sg626/p6260045.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 09:33:27 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:33:27 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:33:27 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 09:33:27 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:33:27 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:33:27 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:33:27 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:33:27 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:33:27 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 09:33:27 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:33:27 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:33:27 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:33:27 29 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:33:27 29 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:33:27 29 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:33:27 29 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:33:27 29 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:33:27 29 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:33:27 29 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:33:27 29 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 09:33:27 29 Jan 2017 UTC 11:34:59 29 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 24775 11:34:59 29 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 11:37:22 29 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 24885 11:37:22 29 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:37:22 29 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 11:37:22 29 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 11:37:22 29 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:37:22 29 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170129013721 ] 11:37:22 29 Jan 2017 UTC: INFO: Base.py(1333): PID:24893 11:37:22 29 Jan 2017 UTC: INFO: Base.py(1375): Started processing 11:37:22 29 Jan 2017 UTC 11:37:22 29 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 11:37:22 29 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 11:37:22 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:37:22 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:37:22 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:46 calls_made:1 call_cycle:0 11:37:22 29 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:46 calls_made:1 call_cycle:0 2245.7270 -15759.9240 01/29/17 11:33:06 UTC) to sdrifter@soest.hawaii.edu 11:37:22 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:46 calls_made:1 call_cycle:0 11:37:22 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 11:37:22 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:46 calls_made:1 call_cycle:0 11:37:22 29 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:46 calls_made:1 call_cycle:0 2245.7270 -15759.9240 01/29/17 11:33:06 UTC) to seaglider@km.soest.hawaii.edu 11:37:22 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:46 calls_made:1 call_cycle:0 11:37:22 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:37:22 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:46 calls_made:1 call_cycle:0 11:37:22 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:37:22 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:46 calls_made:1 call_cycle:0 11:37:22 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:37:22 29 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:37:24 29 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:37:24 29 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:37:24 29 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 11:37:24 29 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:37:24 29 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:37:24 29 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 11:37:24 29 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0046lz 11:37:24 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0046lz.x00 11:37:24 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0046lz.x01 11:37:24 29 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0046lz.r in process_file_group 11:37:24 29 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260046.log 11:37:24 29 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 11:37:24 29 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0046dz 11:37:24 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0046dz.x00 11:37:24 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0046dz.x01 11:37:24 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0046dz.x02 11:37:24 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0046dz.x03 11:37:24 29 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0046dz.r in process_file_group 11:37:24 29 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [46] 11:37:24 29 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [46] 11:37:24 29 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260046) for profiles 11:37:24 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 11:37:24 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/541) 538 540 to QC_BAD because CT out of water 11:37:24 29 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.020m) 11:37:24 29 Jan 2017 UTC: INFO: QC.py(365): Changed (3/541) 5 539 540 to QC_PROBABLY_BAD because raw temperature spikes 11:37:24 29 Jan 2017 UTC: INFO: QC.py(377): Changed (1/541) 540 to QC_BAD because raw salinity below bound 11:37:24 29 Jan 2017 UTC: INFO: QC.py(408): Changed (1/541) 539 to QC_PROBABLY_BAD because raw conductivity spikes 11:37:24 29 Jan 2017 UTC: INFO: QC.py(180): Changed (2/541) 5 539 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 11:37:24 29 Jan 2017 UTC: INFO: QC.py(180): Changed (1/541) 538 to QC_BAD because changed raw cond implies changed raw salinity 11:37:24 29 Jan 2017 UTC: INFO: QC.py(365): Changed (3/541) 5 539 540 to QC_INTERPOLATED because temperature spikes 11:37:24 29 Jan 2017 UTC: INFO: QC.py(377): Changed (1/541) 540 to QC_BAD because salinity below bound 11:37:24 29 Jan 2017 UTC: INFO: QC.py(408): Changed (1/541) 539 to QC_INTERPOLATED because conductivity spikes 11:37:24 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/541) 201:205 to QC_BAD because slow apogee CT flow 11:37:24 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/541) 1:6 to QC_BAD because prior to dive start 11:37:24 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/541) 539 541 to QC_BAD because end of climb 11:37:24 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/541) 1:6 201:205 538:541 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 11:37:24 29 Jan 2017 UTC: INFO: QC.py(180): Changed (15/541) 1:6 201:205 538:541 to QC_BAD because changed corrected salin implies changed speed 11:37:25 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 11:37:25 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.87 cm/s 11:37:25 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.28 cm/s 11:37:25 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 11:37:25 29 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (73/541) 155 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 11:37:25 29 Jan 2017 UTC: INFO: QC.py(180): Changed (3/541) 5 539 540 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 11:37:25 29 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (73/541) 155 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 11:37:25 29 Jan 2017 UTC: INFO: QC.py(180): Changed (3/541) 5 539 540 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 11:37:25 29 Jan 2017 UTC: INFO: QC.py(180): Changed (15/541) 1:6 201:205 538:541 to QC_BAD because changed salinity implies changed optode oxygen 11:37:25 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 11:37:25 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 11:37:25 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 46: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.77% reduction 11:37:25 29 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.46 11:37:25 29 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:37:25 29 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:37:25 29 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:37:25 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 11:37:25 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 11:37:40 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 11:37:40 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 11:37:40 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 11:37:43 29 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:37:43 29 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:37:43 29 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:37:43 29 Jan 2017 UTC /home/sg626/p6260046.log /home/sg626/p6260046.eng /home/sg626/p6260046.asc /home/sg626/p6260046.pro /home/sg626/p6260046.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 11:37:43 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:37:43 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:37:43 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 11:37:43 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:37:43 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:37:43 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:37:43 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:37:43 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:37:43 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 11:37:43 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:37:43 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:37:43 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:37:43 29 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 11:37:43 29 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 11:37:43 29 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 11:37:43 29 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 11:37:43 29 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:37:43 29 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:37:43 29 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:37:43 29 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 11:37:43 29 Jan 2017 UTC 13:33:22 29 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 28816 13:33:22 29 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:36:11 29 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 28936 13:36:11 29 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:36:11 29 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:36:11 29 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:36:11 29 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:36:11 29 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170129033610 ] 13:36:11 29 Jan 2017 UTC: INFO: Base.py(1333): PID:28944 13:36:11 29 Jan 2017 UTC: INFO: Base.py(1375): Started processing 13:36:11 29 Jan 2017 UTC 13:36:11 29 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:36:11 29 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:36:11 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:36:11 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:36:11 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:47 calls_made:1 call_cycle:0 13:36:11 29 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:47 calls_made:1 call_cycle:0 2246.0150 -15759.8980 01/29/17 13:31:22 UTC) to sdrifter@soest.hawaii.edu 13:36:11 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:47 calls_made:1 call_cycle:0 13:36:11 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 13:36:11 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:47 calls_made:1 call_cycle:0 13:36:11 29 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:47 calls_made:1 call_cycle:0 2246.0150 -15759.8980 01/29/17 13:31:22 UTC) to seaglider@km.soest.hawaii.edu 13:36:11 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:47 calls_made:1 call_cycle:0 13:36:11 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:36:11 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:47 calls_made:1 call_cycle:0 13:36:11 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:36:11 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:47 calls_made:1 call_cycle:0 13:36:11 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:36:11 29 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:36:12 29 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:36:12 29 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:36:12 29 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:36:12 29 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:36:12 29 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:36:12 29 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:36:13 29 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0047lz 13:36:13 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0047lz.x00 13:36:13 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0047lz.x01 13:36:13 29 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0047lz.r in process_file_group 13:36:13 29 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260047.log 13:36:13 29 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:36:13 29 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0047dz 13:36:13 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0047dz.x00 13:36:13 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0047dz.x01 13:36:13 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0047dz.x02 13:36:13 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0047dz.x03 13:36:13 29 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0047dz.r in process_file_group 13:36:13 29 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [47] 13:36:13 29 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [47] 13:36:13 29 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260047) for profiles 13:36:13 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:36:13 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/509) 508 509 to QC_BAD because CT out of water 13:36:13 29 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.183m) 13:36:13 29 Jan 2017 UTC: INFO: QC.py(365): Changed (2/509) 2 5 to QC_PROBABLY_BAD because raw temperature spikes 13:36:13 29 Jan 2017 UTC: INFO: QC.py(377): Changed (1/509) 508 to QC_BAD because raw salinity below bound 13:36:13 29 Jan 2017 UTC: INFO: QC.py(180): Changed (2/509) 2 5 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:36:13 29 Jan 2017 UTC: INFO: QC.py(180): Changed (1/509) 509 to QC_BAD because changed raw cond implies changed raw salinity 13:36:13 29 Jan 2017 UTC: INFO: QC.py(365): Changed (2/509) 2 5 to QC_INTERPOLATED because temperature spikes 13:36:13 29 Jan 2017 UTC: INFO: QC.py(377): Changed (1/509) 508 to QC_BAD because salinity below bound 13:36:13 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/509) 192:196 to QC_BAD because slow apogee CT flow 13:36:13 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/509) 1:6 to QC_BAD because prior to dive start 13:36:13 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/509) 507 to QC_BAD because end of climb 13:36:13 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/509) 1:6 192:196 507:509 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:36:13 29 Jan 2017 UTC: INFO: QC.py(180): Changed (14/509) 1:6 192:196 507:509 to QC_BAD because changed corrected salin implies changed speed 13:36:14 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:36:14 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 47 interp_salinity data_points in_between 381 388 % suspect thermal-inertia points 384 13:36:14 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.26 cm/s 13:36:14 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.16 cm/s 13:36:14 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:36:14 29 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (70/509) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:36:14 29 Jan 2017 UTC: INFO: QC.py(180): Changed (2/509) 2 5 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:36:14 29 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (70/509) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:36:14 29 Jan 2017 UTC: INFO: QC.py(180): Changed (2/509) 2 5 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:36:14 29 Jan 2017 UTC: INFO: QC.py(180): Changed (14/509) 1:6 192:196 507:509 to QC_BAD because changed salinity implies changed optode oxygen 13:36:14 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:36:14 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:36:14 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 47: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.75% reduction 13:36:14 29 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.47 13:36:14 29 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:36:14 29 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:36:14 29 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:36:14 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:36:14 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:36:29 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 13:36:30 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:36:30 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:36:33 29 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:36:33 29 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:36:33 29 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:36:33 29 Jan 2017 UTC /home/sg626/p6260047.log /home/sg626/p6260047.eng /home/sg626/p6260047.asc /home/sg626/p6260047.pro /home/sg626/p6260047.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:36:33 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:36:33 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:36:33 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 13:36:33 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:36:33 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:36:33 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:36:33 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:36:33 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:36:33 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 13:36:33 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:36:33 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:36:33 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:36:33 29 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:36:33 29 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:36:33 29 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:36:33 29 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:36:33 29 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:36:33 29 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:36:33 29 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:36:33 29 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 13:36:33 29 Jan 2017 UTC 15:35:45 29 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 32557 15:35:45 29 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 15:37:57 29 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 32666 15:37:57 29 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 15:37:57 29 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 15:37:57 29 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 15:37:57 29 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 15:37:57 29 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170129053757 ] 15:37:57 29 Jan 2017 UTC: INFO: Base.py(1333): PID:32674 15:37:57 29 Jan 2017 UTC: INFO: Base.py(1375): Started processing 15:37:57 29 Jan 2017 UTC 15:37:58 29 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 15:37:58 29 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 15:37:58 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 15:37:58 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:37:58 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:48 calls_made:1 call_cycle:0 15:37:58 29 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:48 calls_made:1 call_cycle:0 2247.1410 -15800.6920 01/29/17 15:33:58 UTC) to sdrifter@soest.hawaii.edu 15:37:58 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:48 calls_made:1 call_cycle:0 15:37:58 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 15:37:58 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:48 calls_made:1 call_cycle:0 15:37:58 29 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:48 calls_made:1 call_cycle:0 2247.1410 -15800.6920 01/29/17 15:33:58 UTC) to seaglider@km.soest.hawaii.edu 15:37:58 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:48 calls_made:1 call_cycle:0 15:37:58 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:37:58 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:48 calls_made:1 call_cycle:0 15:37:58 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:37:58 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:48 calls_made:1 call_cycle:0 15:37:58 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:37:58 29 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 15:37:59 29 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 15:37:59 29 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 15:37:59 29 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 15:37:59 29 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 15:37:59 29 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 15:37:59 29 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 15:37:59 29 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0048lz 15:37:59 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0048lz.x00 15:37:59 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0048lz.x01 15:37:59 29 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0048lz.r in process_file_group 15:37:59 29 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260048.log 15:37:59 29 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 15:37:59 29 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0048dz 15:37:59 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0048dz.x00 15:37:59 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0048dz.x01 15:37:59 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0048dz.x02 15:37:59 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0048dz.x03 15:37:59 29 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0048dz.r in process_file_group 15:38:00 29 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [48] 15:38:00 29 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [48] 15:38:00 29 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260048) for profiles 15:38:00 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 15:38:00 29 Jan 2017 UTC: INFO: QC.py(365): Changed (1/508) 3 to QC_PROBABLY_BAD because raw temperature spikes 15:38:00 29 Jan 2017 UTC: INFO: QC.py(408): Changed (1/508) 2 to QC_PROBABLY_BAD because raw conductivity spikes 15:38:00 29 Jan 2017 UTC: INFO: QC.py(180): Changed (1/508) 3 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 15:38:00 29 Jan 2017 UTC: INFO: QC.py(180): Changed (1/508) 2 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 15:38:00 29 Jan 2017 UTC: INFO: QC.py(365): Changed (1/508) 3 to QC_INTERPOLATED because temperature spikes 15:38:00 29 Jan 2017 UTC: INFO: QC.py(408): Changed (1/508) 2 to QC_INTERPOLATED because conductivity spikes 15:38:00 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/508) 188:193 to QC_BAD because slow apogee CT flow 15:38:00 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/508) 1:6 to QC_BAD because prior to dive start 15:38:00 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/508) 507 508 to QC_BAD because end of climb 15:38:00 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/508) 1:6 188:193 507 508 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 15:38:00 29 Jan 2017 UTC: INFO: QC.py(180): Changed (14/508) 1:6 188:193 507 508 to QC_BAD because changed corrected salin implies changed speed 15:38:00 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 15:38:00 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 48 interp_salinity data_points in_between 346 348 % suspect thermal-inertia points 347 15:38:00 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 48 interp_salinity data_points in_between 350 352 % suspect thermal-inertia points 350 351 15:38:00 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.41 cm/s 15:38:00 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.26 cm/s 15:38:00 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 15:38:00 29 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (75/508) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 15:38:00 29 Jan 2017 UTC: INFO: QC.py(180): Changed (1/508) 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 15:38:00 29 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (75/508) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 15:38:00 29 Jan 2017 UTC: INFO: QC.py(180): Changed (1/508) 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 15:38:00 29 Jan 2017 UTC: INFO: QC.py(180): Changed (14/508) 1:6 188:193 507 508 to QC_BAD because changed salinity implies changed optode oxygen 15:38:00 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 15:38:00 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 15:38:01 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 48: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.76% reduction 15:38:01 29 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.48 15:38:01 29 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 15:38:01 29 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 15:38:01 29 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 15:38:01 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 15:38:01 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 15:38:16 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 15:38:17 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 15:38:17 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 15:38:20 29 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 15:38:20 29 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 15:38:20 29 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 15:38:20 29 Jan 2017 UTC /home/sg626/p6260048.log /home/sg626/p6260048.eng /home/sg626/p6260048.asc /home/sg626/p6260048.pro /home/sg626/p6260048.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 15:38:20 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 15:38:20 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:38:20 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 15:38:20 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:38:20 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:38:20 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:38:20 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 15:38:20 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:38:20 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 15:38:20 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:38:20 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:38:20 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:38:20 29 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 15:38:20 29 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 15:38:20 29 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 15:38:20 29 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 15:38:20 29 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 15:38:20 29 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 15:38:20 29 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 15:38:20 29 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 15:38:20 29 Jan 2017 UTC 17:39:50 29 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 4020 17:39:50 29 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:42:20 29 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 4213 17:42:20 29 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:42:20 29 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:42:20 29 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:42:20 29 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:42:20 29 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170129074220 ] 17:42:20 29 Jan 2017 UTC: INFO: Base.py(1333): PID:4221 17:42:20 29 Jan 2017 UTC: INFO: Base.py(1375): Started processing 17:42:20 29 Jan 2017 UTC 17:42:20 29 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:42:21 29 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:42:21 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:42:21 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:42:21 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:49 calls_made:1 call_cycle:0 17:42:21 29 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:49 calls_made:1 call_cycle:0 2248.2570 -15800.5100 01/29/17 17:38:02 UTC) to sdrifter@soest.hawaii.edu 17:42:21 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:49 calls_made:1 call_cycle:0 17:42:21 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 17:42:21 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:49 calls_made:1 call_cycle:0 17:42:21 29 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:49 calls_made:1 call_cycle:0 2248.2570 -15800.5100 01/29/17 17:38:02 UTC) to seaglider@km.soest.hawaii.edu 17:42:21 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:49 calls_made:1 call_cycle:0 17:42:21 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:42:21 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:49 calls_made:1 call_cycle:0 17:42:21 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:42:21 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:49 calls_made:1 call_cycle:0 17:42:21 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:42:21 29 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:42:22 29 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:42:22 29 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:42:22 29 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:42:22 29 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:42:22 29 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:42:22 29 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:42:22 29 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0049lz 17:42:22 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0049lz.x00 17:42:22 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0049lz.x01 17:42:22 29 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0049lz.r in process_file_group 17:42:22 29 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260049.log 17:42:22 29 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:42:22 29 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0049dz 17:42:22 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0049dz.x00 17:42:22 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0049dz.x01 17:42:22 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0049dz.x02 17:42:22 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0049dz.x03 17:42:22 29 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0049dz.r in process_file_group 17:42:23 29 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [49] 17:42:23 29 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [49] 17:42:23 29 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260049) for profiles 17:42:23 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:42:23 29 Jan 2017 UTC: INFO: QC.py(365): Changed (4/535) 2 3 187 533 to QC_PROBABLY_BAD because raw temperature spikes 17:42:23 29 Jan 2017 UTC: INFO: QC.py(180): Changed (4/535) 2 3 187 533 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:42:23 29 Jan 2017 UTC: INFO: QC.py(365): Changed (4/535) 2 3 187 533 to QC_INTERPOLATED because temperature spikes 17:42:23 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/535) 185:190 to QC_BAD because slow apogee CT flow 17:42:23 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/535) 1:6 to QC_BAD because prior to dive start 17:42:23 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (4/535) 532:535 to QC_BAD because end of climb 17:42:23 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/535) 1:6 185:190 532:535 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:42:23 29 Jan 2017 UTC: INFO: QC.py(180): Changed (16/535) 1:6 185:190 532:535 to QC_BAD because changed corrected salin implies changed speed 17:42:23 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:42:23 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.80 cm/s 17:42:23 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 2.84 cm/s 17:42:23 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:42:23 29 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (74/535) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:42:23 29 Jan 2017 UTC: INFO: QC.py(180): Changed (3/535) 2 3 533 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:42:23 29 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (74/535) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:42:23 29 Jan 2017 UTC: INFO: QC.py(180): Changed (3/535) 2 3 533 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:42:23 29 Jan 2017 UTC: INFO: QC.py(180): Changed (16/535) 1:6 185:190 532:535 to QC_BAD because changed salinity implies changed optode oxygen 17:42:23 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:42:23 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:42:24 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 49: Data set size for profile, binned and kkyy files reduced by 16 points, a 2.99% reduction 17:42:24 29 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.49 17:42:24 29 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:42:24 29 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:42:24 29 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:42:24 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:42:24 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:42:40 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 17:42:40 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:42:40 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:42:44 29 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:42:44 29 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:42:44 29 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:42:44 29 Jan 2017 UTC /home/sg626/p6260049.log /home/sg626/p6260049.eng /home/sg626/p6260049.asc /home/sg626/p6260049.pro /home/sg626/p6260049.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:42:44 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:42:44 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:42:44 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 17:42:44 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:42:44 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:42:44 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:42:44 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:42:44 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:42:44 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 17:42:44 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:42:44 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:42:44 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:42:44 29 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:42:44 29 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:42:44 29 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:42:44 29 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:42:44 29 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:42:44 29 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:42:44 29 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:42:44 29 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 17:42:44 29 Jan 2017 UTC 19:34:50 29 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 7612 19:34:50 29 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:37:06 29 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 7721 19:37:06 29 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:37:06 29 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:37:06 29 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:37:06 29 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:37:06 29 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170129093706 ] 19:37:06 29 Jan 2017 UTC: INFO: Base.py(1333): PID:7729 19:37:06 29 Jan 2017 UTC: INFO: Base.py(1375): Started processing 19:37:06 29 Jan 2017 UTC 19:37:06 29 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:37:07 29 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:37:07 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:37:07 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:37:07 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:50 calls_made:1 call_cycle:0 19:37:07 29 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:50 calls_made:1 call_cycle:0 2249.5520 -15800.4410 01/29/17 19:33:01 UTC) to sdrifter@soest.hawaii.edu 19:37:07 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:50 calls_made:1 call_cycle:0 19:37:07 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 19:37:07 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:50 calls_made:1 call_cycle:0 19:37:07 29 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:50 calls_made:1 call_cycle:0 2249.5520 -15800.4410 01/29/17 19:33:01 UTC) to seaglider@km.soest.hawaii.edu 19:37:07 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:50 calls_made:1 call_cycle:0 19:37:07 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:37:07 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:50 calls_made:1 call_cycle:0 19:37:07 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:37:07 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:50 calls_made:1 call_cycle:0 19:37:07 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:37:07 29 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:37:08 29 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:37:08 29 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:37:08 29 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:37:08 29 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:37:08 29 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:37:08 29 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:37:08 29 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0050lz 19:37:08 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0050lz.x00 19:37:08 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0050lz.x01 19:37:08 29 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0050lz.r in process_file_group 19:37:08 29 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260050.log 19:37:08 29 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:37:08 29 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0050dz 19:37:08 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0050dz.x00 19:37:08 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0050dz.x01 19:37:08 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0050dz.x02 19:37:08 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0050dz.x03 19:37:08 29 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0050dz.r in process_file_group 19:37:09 29 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [50] 19:37:09 29 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [50] 19:37:09 29 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260050) for profiles 19:37:09 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 19:37:09 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/493) 493 to QC_BAD because CT out of water 19:37:09 29 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.072m) 19:37:09 29 Jan 2017 UTC: INFO: QC.py(365): Changed (4/493) 3:5 176 to QC_PROBABLY_BAD because raw temperature spikes 19:37:09 29 Jan 2017 UTC: INFO: QC.py(180): Changed (4/493) 3:5 176 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:37:09 29 Jan 2017 UTC: INFO: QC.py(180): Changed (1/493) 493 to QC_BAD because changed raw cond implies changed raw salinity 19:37:09 29 Jan 2017 UTC: INFO: QC.py(365): Changed (4/493) 3:5 176 to QC_INTERPOLATED because temperature spikes 19:37:09 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/493) 174:178 to QC_BAD because slow apogee CT flow 19:37:09 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/493) 1:6 to QC_BAD because prior to dive start 19:37:09 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/493) 492 to QC_BAD because end of climb 19:37:09 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/493) 1:6 174:178 492 493 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:37:09 29 Jan 2017 UTC: INFO: QC.py(180): Changed (13/493) 1:6 174:178 492 493 to QC_BAD because changed corrected salin implies changed speed 19:37:09 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:37:09 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 50 interp_salinity data_points in_between 331 338 % suspect thermal-inertia points 335 19:37:09 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 50 interp_salinity data_points in_between 347 377 % suspect thermal-inertia points 350:354 19:37:09 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.48 cm/s 19:37:09 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.19 cm/s 19:37:09 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:37:09 29 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (68/493) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:37:09 29 Jan 2017 UTC: INFO: QC.py(180): Changed (4/493) 3:5 176 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 19:37:09 29 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (68/493) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 19:37:09 29 Jan 2017 UTC: INFO: QC.py(180): Changed (4/493) 3:5 176 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 19:37:09 29 Jan 2017 UTC: INFO: QC.py(180): Changed (13/493) 1:6 174:178 492 493 to QC_BAD because changed salinity implies changed optode oxygen 19:37:09 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:37:09 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 19:37:10 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 50: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.64% reduction 19:37:10 29 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.50 19:37:10 29 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:37:10 29 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:37:10 29 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:37:10 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 19:37:10 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 19:37:26 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 19:37:26 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 19:37:26 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 19:37:30 29 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:37:30 29 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:37:30 29 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:37:30 29 Jan 2017 UTC /home/sg626/p6260050.log /home/sg626/p6260050.eng /home/sg626/p6260050.asc /home/sg626/p6260050.pro /home/sg626/p6260050.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 19:37:30 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:37:30 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:37:30 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 19:37:30 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:37:30 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:37:30 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:37:30 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:37:30 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:37:30 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 19:37:30 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:37:30 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:37:30 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:37:30 29 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:37:30 29 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:37:30 29 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:37:30 29 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:37:30 29 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:37:30 29 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:37:30 29 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:37:30 29 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 19:37:30 29 Jan 2017 UTC 21:24:46 29 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 10902 21:24:46 29 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:26:48 29 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 11018 21:26:48 29 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:26:48 29 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:26:48 29 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:26:48 29 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:26:48 29 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170129112647 ] 21:26:48 29 Jan 2017 UTC: INFO: Base.py(1333): PID:11026 21:26:48 29 Jan 2017 UTC: INFO: Base.py(1375): Started processing 21:26:48 29 Jan 2017 UTC 21:26:48 29 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:26:48 29 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:26:48 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:26:48 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:26:48 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:51 calls_made:1 call_cycle:0 21:26:48 29 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:51 calls_made:1 call_cycle:0 2250.0450 -15800.4210 01/29/17 21:23:01 UTC) to sdrifter@soest.hawaii.edu 21:26:49 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:51 calls_made:1 call_cycle:0 21:26:49 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 21:26:49 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:51 calls_made:1 call_cycle:0 21:26:49 29 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:51 calls_made:1 call_cycle:0 2250.0450 -15800.4210 01/29/17 21:23:01 UTC) to seaglider@km.soest.hawaii.edu 21:26:49 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:51 calls_made:1 call_cycle:0 21:26:49 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:26:49 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:51 calls_made:1 call_cycle:0 21:26:49 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:26:49 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:51 calls_made:1 call_cycle:0 21:26:49 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:26:49 29 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:26:50 29 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:26:50 29 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:26:50 29 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:26:50 29 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:26:50 29 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:26:50 29 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:26:50 29 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0051lz 21:26:50 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0051lz.x00 21:26:50 29 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0051lz.r in process_file_group 21:26:50 29 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260051.log 21:26:50 29 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:26:50 29 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0051dz 21:26:50 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0051dz.x00 21:26:50 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0051dz.x01 21:26:50 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0051dz.x02 21:26:50 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0051dz.x03 21:26:50 29 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0051dz.r in process_file_group 21:26:50 29 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [51] 21:26:50 29 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [51] 21:26:50 29 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260051) for profiles 21:26:50 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:26:51 29 Jan 2017 UTC: INFO: QC.py(365): Changed (1/486) 3 to QC_PROBABLY_BAD because raw temperature spikes 21:26:51 29 Jan 2017 UTC: INFO: QC.py(408): Changed (1/486) 3 to QC_PROBABLY_BAD because raw conductivity spikes 21:26:51 29 Jan 2017 UTC: INFO: QC.py(180): Changed (1/486) 3 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:26:51 29 Jan 2017 UTC: INFO: QC.py(365): Changed (1/486) 3 to QC_INTERPOLATED because temperature spikes 21:26:51 29 Jan 2017 UTC: INFO: QC.py(408): Changed (1/486) 3 to QC_INTERPOLATED because conductivity spikes 21:26:51 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (4/486) 154:157 to QC_BAD because slow apogee CT flow 21:26:51 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/486) 1:6 to QC_BAD because prior to dive start 21:26:51 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (10/486) 1:6 154:157 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:26:51 29 Jan 2017 UTC: INFO: QC.py(180): Changed (10/486) 1:6 154:157 to QC_BAD because changed corrected salin implies changed speed 21:26:51 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:26:51 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 51 interp_salinity data_points in_between 337 341 % suspect thermal-inertia points 337:340 21:26:51 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 51 interp_salinity data_points in_between 362 371 % suspect thermal-inertia points 364:366 21:26:51 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 51 interp_salinity data_points in_between 373 379 % suspect thermal-inertia points 374:377 21:26:51 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.03 cm/s 21:26:51 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 5.02 cm/s 21:26:51 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:26:51 29 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (62/486) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:26:51 29 Jan 2017 UTC: INFO: QC.py(180): Changed (1/486) 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:26:51 29 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (62/486) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:26:51 29 Jan 2017 UTC: INFO: QC.py(180): Changed (1/486) 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:26:51 29 Jan 2017 UTC: INFO: QC.py(180): Changed (10/486) 1:6 154:157 to QC_BAD because changed salinity implies changed optode oxygen 21:26:51 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:26:51 29 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:26:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:26:51 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 51: Data set size for profile, binned and kkyy files reduced by 10 points, a 2.06% reduction 21:26:51 29 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.51 21:26:51 29 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:26:51 29 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:26:51 29 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:26:52 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:26:52 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 21:27:08 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 21:27:08 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 21:27:08 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 21:27:12 29 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:27:12 29 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:27:12 29 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:27:12 29 Jan 2017 UTC /home/sg626/p6260051.log /home/sg626/p6260051.eng /home/sg626/p6260051.asc /home/sg626/p6260051.pro /home/sg626/p6260051.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 21:27:12 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:27:12 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:27:12 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 21:27:12 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:27:12 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:27:12 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:27:12 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:27:12 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:27:12 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,recov,alerts) 21:27:12 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:27:12 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:27:12 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:27:12 29 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:27:12 29 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:27:12 29 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:27:12 29 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:27:12 29 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:27:12 29 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:27:12 29 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:27:12 29 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 21:27:12 29 Jan 2017 UTC 23:20:26 29 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 15072 23:20:26 29 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 23:22:48 29 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 15219 23:22:48 29 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:22:48 29 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:22:48 29 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:22:48 29 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:22:48 29 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170129132248 ] 23:22:48 29 Jan 2017 UTC: INFO: Base.py(1333): PID:15228 23:22:48 29 Jan 2017 UTC: INFO: Base.py(1375): Started processing 23:22:48 29 Jan 2017 UTC 23:22:48 29 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:22:48 29 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:22:48 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:22:48 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:22:48 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:52 calls_made:1 call_cycle:0 23:22:48 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:22:48 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:52 calls_made:1 call_cycle:0 23:22:48 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:22:48 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:52 calls_made:1 call_cycle:0 23:22:48 29 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:52 calls_made:1 call_cycle:0 2250.7020 -15800.5220 01/29/17 23:18:35 UTC) to sdrifter@soest.hawaii.edu 23:22:49 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:52 calls_made:1 call_cycle:0 23:22:49 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:22:49 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:52 calls_made:1 call_cycle:0 23:22:49 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:22:49 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:52 calls_made:1 call_cycle:0 23:22:49 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:22:49 29 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:52 calls_made:1 call_cycle:0 23:22:49 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:22:49 29 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:22:50 29 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:22:50 29 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:22:50 29 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:22:50 29 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:22:50 29 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:22:50 29 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:22:50 29 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0052lz 23:22:50 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0052lz.x00 23:22:50 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0052lz.x01 23:22:50 29 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0052lz.r in process_file_group 23:22:50 29 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260052.log 23:22:50 29 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:22:50 29 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0052dz 23:22:50 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0052dz.x00 23:22:50 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0052dz.x01 23:22:50 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0052dz.x02 23:22:50 29 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0052dz.x03 23:22:50 29 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0052dz.r in process_file_group 23:22:50 29 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [52] 23:22:50 29 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [52] 23:22:51 29 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260052) for profiles 23:22:51 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 23:22:51 29 Jan 2017 UTC: INFO: QC.py(408): Changed (2/522) 520 521 to QC_PROBABLY_BAD because raw conductivity spikes 23:22:51 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/522) 522 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 23:22:51 29 Jan 2017 UTC: INFO: QC.py(180): Changed (2/522) 520 521 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 23:22:51 29 Jan 2017 UTC: INFO: QC.py(180): Changed (1/522) 522 to QC_BAD because changed raw cond implies changed raw salinity 23:22:51 29 Jan 2017 UTC: INFO: QC.py(408): Changed (2/522) 520 521 to QC_INTERPOLATED because conductivity spikes 23:22:51 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/522) 522 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 23:22:51 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (4/522) 162:165 to QC_BAD because slow apogee CT flow 23:22:51 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/522) 1:6 to QC_BAD because prior to dive start 23:22:51 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/522) 521 to QC_BAD because end of climb 23:22:51 29 Jan 2017 UTC: INFO: QC.py(488): Changed (1/522) 520 to QC_PROBABLY_BAD because bad interpolation anchors 23:22:51 29 Jan 2017 UTC: INFO: QC.py(489): SUGGESTION: 52 bad_conductivity data_points in_between 518 520 % bad interpolation anchors 23:22:51 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/522) 1:6 162:165 521 522 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 23:22:51 29 Jan 2017 UTC: INFO: QC.py(180): Changed (12/522) 1:6 162:165 521 522 to QC_BAD because changed corrected salin implies changed speed 23:22:51 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 23:22:51 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 52 interp_salinity data_points in_between 227 232 % suspect thermal-inertia points 228 229 23:22:51 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 52 interp_salinity data_points in_between 296 302 % suspect thermal-inertia points 297:299 23:22:51 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 52 interp_salinity data_points in_between 326 332 % suspect thermal-inertia points 327:330 23:22:51 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 52 interp_salinity data_points in_between 359 359 % suspect thermal-inertia points 359 23:22:51 29 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 52 interp_salinity data_points in_between 361 362 % suspect thermal-inertia points 361 23:22:51 29 Jan 2017 UTC: INFO: QC.py(180): Changed (1/522) 520 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 23:22:51 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 27.32 cm/s 23:22:51 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 5.27 cm/s 23:22:51 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 23:22:51 29 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (65/522) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 23:22:51 29 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (65/522) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 23:22:51 29 Jan 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/522) 520 to QC_BAD because bad aa4330 oyxgen 23:22:51 29 Jan 2017 UTC: INFO: QC.py(180): Changed (12/522) 1:6 162:165 521 522 to QC_BAD because changed salinity implies changed optode oxygen 23:22:51 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 23:22:51 29 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 23:22:51 29 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 23:22:52 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 52: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.30% reduction 23:22:52 29 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.52 23:22:52 29 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:22:52 29 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:22:52 29 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:22:52 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 23:22:52 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 23:23:09 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 23:23:09 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 23:23:09 29 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 23:23:12 29 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:23:12 29 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:23:12 29 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:23:12 29 Jan 2017 UTC /home/sg626/p6260052.log /home/sg626/p6260052.eng /home/sg626/p6260052.asc /home/sg626/p6260052.pro /home/sg626/p6260052.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 23:23:12 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:23:12 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:23:12 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:23:12 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:23:12 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:23:12 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:23:12 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:23:12 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:23:12 29 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:23:12 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:23:12 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:23:12 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:23:12 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:23:12 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:23:12 29 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:23:12 29 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:23:12 29 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:23:12 29 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:23:12 29 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:23:12 29 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:23:12 29 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:23:12 29 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:23:12 29 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:23:12 29 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 23:23:12 29 Jan 2017 UTC 01:10:35 30 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 20417 01:10:35 30 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:12:43 30 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 20561 01:12:43 30 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:12:43 30 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:12:43 30 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:12:43 30 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:12:43 30 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170129151243 ] 01:12:43 30 Jan 2017 UTC: INFO: Base.py(1333): PID:20569 01:12:43 30 Jan 2017 UTC: INFO: Base.py(1375): Started processing 01:12:43 30 Jan 2017 UTC 01:12:43 30 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:12:44 30 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:12:44 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:12:44 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:12:44 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:53 calls_made:1 call_cycle:0 01:12:44 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:12:44 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:53 calls_made:1 call_cycle:0 01:12:44 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:12:44 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:53 calls_made:1 call_cycle:0 01:12:44 30 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:53 calls_made:1 call_cycle:0 2250.4220 -15800.7940 01/30/17 01:08:32 UTC) to sdrifter@soest.hawaii.edu 01:12:44 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:53 calls_made:1 call_cycle:0 01:12:44 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:12:44 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:53 calls_made:1 call_cycle:0 01:12:44 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:12:44 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:53 calls_made:1 call_cycle:0 01:12:44 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:12:44 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:53 calls_made:1 call_cycle:0 01:12:44 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:12:44 30 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:12:45 30 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:12:45 30 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:12:45 30 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:12:45 30 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:12:45 30 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:12:45 30 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:12:45 30 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0053lz 01:12:45 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0053lz.x00 01:12:45 30 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0053lz.r in process_file_group 01:12:45 30 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260053.log 01:12:45 30 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:12:45 30 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0053dz 01:12:45 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0053dz.x00 01:12:45 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0053dz.x01 01:12:45 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0053dz.x02 01:12:45 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0053dz.x03 01:12:45 30 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0053dz.r in process_file_group 01:12:46 30 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [53] 01:12:46 30 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [53] 01:12:46 30 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260053) for profiles 01:12:46 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:12:46 30 Jan 2017 UTC: INFO: QC.py(365): Changed (3/499) 2 4 5 to QC_PROBABLY_BAD because raw temperature spikes 01:12:46 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/499) 499 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 01:12:46 30 Jan 2017 UTC: INFO: QC.py(180): Changed (3/499) 2 4 5 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:12:46 30 Jan 2017 UTC: INFO: QC.py(180): Changed (1/499) 499 to QC_BAD because changed raw cond implies changed raw salinity 01:12:46 30 Jan 2017 UTC: INFO: QC.py(365): Changed (3/499) 2 4 5 to QC_INTERPOLATED because temperature spikes 01:12:46 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/499) 499 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 01:12:46 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (4/499) 158:161 to QC_BAD because slow apogee CT flow 01:12:46 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/499) 1:6 to QC_BAD because prior to dive start 01:12:46 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/499) 1:6 158:161 499 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:12:46 30 Jan 2017 UTC: INFO: QC.py(180): Changed (11/499) 1:6 158:161 499 to QC_BAD because changed corrected salin implies changed speed 01:12:46 30 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:12:46 30 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 53 interp_salinity data_points in_between 81 90 % suspect thermal-inertia points 84 01:12:46 30 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 53 interp_salinity data_points in_between 270 271 % suspect thermal-inertia points 271 01:12:46 30 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 53 interp_salinity data_points in_between 277 282 % suspect thermal-inertia points 280:282 01:12:46 30 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 53 interp_salinity data_points in_between 284 287 % suspect thermal-inertia points 284 01:12:46 30 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 53 interp_salinity data_points in_between 289 290 % suspect thermal-inertia points 289 290 01:12:46 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.00 cm/s 01:12:46 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 5.14 cm/s 01:12:46 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:12:46 30 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (60/499) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:12:46 30 Jan 2017 UTC: INFO: QC.py(180): Changed (3/499) 2 4 5 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 01:12:46 30 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (60/499) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 01:12:46 30 Jan 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/499) 84 to QC_BAD because bad aa4330 oyxgen 01:12:46 30 Jan 2017 UTC: INFO: QC.py(180): Changed (3/499) 2 4 5 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 01:12:46 30 Jan 2017 UTC: INFO: QC.py(180): Changed (11/499) 1:6 158:161 499 to QC_BAD because changed salinity implies changed optode oxygen 01:12:46 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:12:46 30 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:12:46 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:12:47 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 53: Data set size for profile, binned and kkyy files reduced by 11 points, a 2.20% reduction 01:12:47 30 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.53 01:12:47 30 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:12:47 30 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:12:47 30 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:12:47 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:12:47 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 01:13:04 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 01:13:04 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 01:13:04 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 01:13:08 30 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:13:08 30 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:13:08 30 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:13:08 30 Jan 2017 UTC /home/sg626/p6260053.log /home/sg626/p6260053.eng /home/sg626/p6260053.asc /home/sg626/p6260053.pro /home/sg626/p6260053.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 01:13:08 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:13:08 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:13:08 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:13:08 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:13:08 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:13:08 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:13:08 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:13:08 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:13:08 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:13:08 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:13:08 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:13:08 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:13:08 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:13:08 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:13:08 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:13:08 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:13:08 30 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:13:08 30 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:13:08 30 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:13:08 30 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:13:08 30 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:13:08 30 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:13:08 30 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:13:08 30 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 01:13:08 30 Jan 2017 UTC 03:15:54 30 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 25648 03:15:54 30 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:18:11 30 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 25764 03:18:11 30 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:18:11 30 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:18:11 30 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:18:11 30 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:18:11 30 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170129171810 ] 03:18:11 30 Jan 2017 UTC: INFO: Base.py(1333): PID:25771 03:18:11 30 Jan 2017 UTC: INFO: Base.py(1375): Started processing 03:18:11 30 Jan 2017 UTC 03:18:11 30 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:18:11 30 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:18:11 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:18:11 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:18:11 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:54 calls_made:1 call_cycle:0 03:18:11 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:18:11 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:54 calls_made:1 call_cycle:0 03:18:11 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:18:11 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:54 calls_made:1 call_cycle:0 03:18:11 30 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:54 calls_made:1 call_cycle:0 2249.9850 -15801.0560 01/30/17 03:14:00 UTC) to sdrifter@soest.hawaii.edu 03:18:11 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:54 calls_made:1 call_cycle:0 03:18:11 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:18:11 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:54 calls_made:1 call_cycle:0 03:18:11 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:18:11 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:54 calls_made:1 call_cycle:0 03:18:11 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:18:11 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:54 calls_made:1 call_cycle:0 03:18:11 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:18:11 30 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:18:12 30 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:18:13 30 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:18:13 30 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:18:13 30 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:18:13 30 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:18:13 30 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:18:13 30 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0054lz 03:18:13 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0054lz.x00 03:18:13 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0054lz.x01 03:18:13 30 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0054lz.r in process_file_group 03:18:13 30 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260054.log 03:18:13 30 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:18:13 30 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0054dz 03:18:13 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0054dz.x00 03:18:13 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0054dz.x01 03:18:13 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0054dz.x02 03:18:13 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0054dz.x03 03:18:13 30 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0054dz.r in process_file_group 03:18:13 30 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [54] 03:18:13 30 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [54] 03:18:13 30 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260054) for profiles 03:18:13 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 03:18:13 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/544) 201:205 to QC_BAD because slow apogee CT flow 03:18:13 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/544) 1:6 to QC_BAD because prior to dive start 03:18:13 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/544) 543 544 to QC_BAD because end of climb 03:18:13 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/544) 1:6 201:205 543 544 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:18:13 30 Jan 2017 UTC: INFO: QC.py(180): Changed (13/544) 1:6 201:205 543 544 to QC_BAD because changed corrected salin implies changed speed 03:18:14 30 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 03:18:14 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.37 cm/s 03:18:14 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.26 cm/s 03:18:14 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:18:14 30 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (73/544) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:18:14 30 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (73/544) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 03:18:14 30 Jan 2017 UTC: INFO: QC.py(180): Changed (13/544) 1:6 201:205 543 544 to QC_BAD because changed salinity implies changed optode oxygen 03:18:14 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:18:14 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 03:18:14 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 54: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.39% reduction 03:18:14 30 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.54 03:18:14 30 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:18:14 30 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:18:14 30 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:18:14 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 03:18:14 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 03:18:32 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 03:18:32 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 03:18:32 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 03:18:36 30 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:18:36 30 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:18:36 30 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:18:36 30 Jan 2017 UTC /home/sg626/p6260054.log /home/sg626/p6260054.eng /home/sg626/p6260054.asc /home/sg626/p6260054.pro /home/sg626/p6260054.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 03:18:36 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:18:36 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:18:36 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:18:36 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:18:36 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:18:36 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:18:36 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:18:36 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:18:36 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:18:36 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:18:36 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:18:36 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:18:36 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:18:36 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:18:36 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:18:36 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:18:36 30 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:18:36 30 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:18:36 30 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:18:36 30 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:18:36 30 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:18:36 30 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:18:36 30 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:18:36 30 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 03:18:36 30 Jan 2017 UTC 05:15:26 30 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 30142 05:15:26 30 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:17:46 30 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 30378 05:17:46 30 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:17:46 30 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:17:46 30 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:17:46 30 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:17:46 30 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170129191745 ] 05:17:46 30 Jan 2017 UTC: INFO: Base.py(1333): PID:30386 05:17:46 30 Jan 2017 UTC: INFO: Base.py(1375): Started processing 05:17:46 30 Jan 2017 UTC 05:17:46 30 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:17:46 30 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:17:46 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:17:46 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:17:46 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:55 calls_made:1 call_cycle:0 05:17:46 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:17:46 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:55 calls_made:1 call_cycle:0 05:17:46 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:17:46 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:55 calls_made:1 call_cycle:0 05:17:46 30 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:55 calls_made:1 call_cycle:0 2250.0950 -15800.6550 01/30/17 05:13:29 UTC) to sdrifter@soest.hawaii.edu 05:17:47 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:55 calls_made:1 call_cycle:0 05:17:47 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:17:47 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:55 calls_made:1 call_cycle:0 05:17:47 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:17:47 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:55 calls_made:1 call_cycle:0 05:17:47 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:17:47 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:55 calls_made:1 call_cycle:0 05:17:47 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:17:47 30 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:17:48 30 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:17:48 30 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:17:48 30 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:17:48 30 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:17:48 30 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:17:48 30 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:17:48 30 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0055lz 05:17:48 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0055lz.x00 05:17:48 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0055lz.x01 05:17:48 30 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0055lz.r in process_file_group 05:17:48 30 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260055.log 05:17:48 30 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:17:48 30 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0055dz 05:17:48 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0055dz.x00 05:17:48 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0055dz.x01 05:17:48 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0055dz.x02 05:17:48 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0055dz.x03 05:17:48 30 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0055dz.r in process_file_group 05:17:48 30 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [55] 05:17:48 30 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [55] 05:17:49 30 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260055) for profiles 05:17:49 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:17:49 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/516) 514 516 to QC_BAD because CT out of water 05:17:49 30 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.027m) 05:17:49 30 Jan 2017 UTC: INFO: QC.py(365): Changed (3/516) 184 514 515 to QC_PROBABLY_BAD because raw temperature spikes 05:17:49 30 Jan 2017 UTC: INFO: QC.py(180): Changed (3/516) 184 514 515 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:17:49 30 Jan 2017 UTC: INFO: QC.py(180): Changed (2/516) 514 516 to QC_BAD because changed raw cond implies changed raw salinity 05:17:49 30 Jan 2017 UTC: INFO: QC.py(365): Changed (3/516) 184 514 515 to QC_INTERPOLATED because temperature spikes 05:17:49 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/516) 182:186 to QC_BAD because slow apogee CT flow 05:17:49 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/516) 1:6 to QC_BAD because prior to dive start 05:17:49 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/516) 513 515 to QC_BAD because end of climb 05:17:49 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/516) 1:6 182:186 513:516 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:17:49 30 Jan 2017 UTC: INFO: QC.py(180): Changed (15/516) 1:6 182:186 513:516 to QC_BAD because changed corrected salin implies changed speed 05:17:49 30 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:17:49 30 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 55 interp_salinity data_points in_between 269 281 % suspect thermal-inertia points 274 05:17:49 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.05 cm/s 05:17:49 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.15 cm/s 05:17:49 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:17:49 30 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (70/516) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:17:49 30 Jan 2017 UTC: INFO: QC.py(180): Changed (2/516) 514 515 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:17:49 30 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (70/516) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:17:49 30 Jan 2017 UTC: INFO: QC.py(180): Changed (2/516) 514 515 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:17:49 30 Jan 2017 UTC: INFO: QC.py(180): Changed (15/516) 1:6 182:186 513:516 to QC_BAD because changed salinity implies changed optode oxygen 05:17:49 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:17:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 05:17:50 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 55: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.91% reduction 05:17:50 30 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.55 05:17:50 30 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:17:50 30 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:17:50 30 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:17:50 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 05:17:50 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 05:18:07 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 05:18:07 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 05:18:07 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 05:18:11 30 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:18:11 30 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:18:11 30 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:18:11 30 Jan 2017 UTC /home/sg626/p6260055.log /home/sg626/p6260055.eng /home/sg626/p6260055.asc /home/sg626/p6260055.pro /home/sg626/p6260055.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 05:18:11 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:18:11 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:18:11 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:18:11 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:18:11 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:18:11 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:18:11 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:18:11 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:18:11 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:18:11 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:18:11 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:18:11 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:18:11 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:18:11 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:18:11 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:18:11 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:18:11 30 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:18:11 30 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:18:11 30 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:18:11 30 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:18:11 30 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:18:11 30 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:18:11 30 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:18:11 30 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 05:18:11 30 Jan 2017 UTC 07:19:35 30 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 2266 07:19:35 30 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:21:59 30 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 2469 07:21:59 30 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:21:59 30 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:21:59 30 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:21:59 30 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:21:59 30 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170129212159 ] 07:21:59 30 Jan 2017 UTC: INFO: Base.py(1333): PID:2476 07:21:59 30 Jan 2017 UTC: INFO: Base.py(1375): Started processing 07:21:59 30 Jan 2017 UTC 07:21:59 30 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:22:00 30 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:22:00 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:22:00 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:22:00 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:56 calls_made:1 call_cycle:0 07:22:00 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:22:00 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:56 calls_made:1 call_cycle:0 07:22:00 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:22:00 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:56 calls_made:1 call_cycle:0 07:22:00 30 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:56 calls_made:1 call_cycle:0 2249.8160 -15800.5090 01/30/17 07:17:48 UTC) to sdrifter@soest.hawaii.edu 07:22:00 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:56 calls_made:1 call_cycle:0 07:22:00 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:22:00 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:56 calls_made:1 call_cycle:0 07:22:00 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:22:00 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:56 calls_made:1 call_cycle:0 07:22:00 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:22:00 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:56 calls_made:1 call_cycle:0 07:22:00 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:22:00 30 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:22:01 30 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:22:01 30 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:22:01 30 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:22:01 30 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:22:01 30 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:22:01 30 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:22:01 30 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0056lz 07:22:01 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0056lz.x00 07:22:01 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0056lz.x01 07:22:01 30 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0056lz.r in process_file_group 07:22:01 30 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260056.log 07:22:01 30 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:22:01 30 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0056dz 07:22:01 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0056dz.x00 07:22:01 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0056dz.x01 07:22:01 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0056dz.x02 07:22:01 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0056dz.x03 07:22:01 30 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0056dz.r in process_file_group 07:22:02 30 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [56] 07:22:02 30 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [56] 07:22:02 30 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260056) for profiles 07:22:02 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 07:22:02 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/529) 529 to QC_BAD because CT out of water 07:22:02 30 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.049m) 07:22:02 30 Jan 2017 UTC: INFO: QC.py(365): Changed (2/529) 3 194 to QC_PROBABLY_BAD because raw temperature spikes 07:22:02 30 Jan 2017 UTC: INFO: QC.py(180): Changed (2/529) 3 194 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:22:02 30 Jan 2017 UTC: INFO: QC.py(180): Changed (1/529) 529 to QC_BAD because changed raw cond implies changed raw salinity 07:22:02 30 Jan 2017 UTC: INFO: QC.py(365): Changed (2/529) 3 194 to QC_INTERPOLATED because temperature spikes 07:22:02 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/529) 192:196 to QC_BAD because slow apogee CT flow 07:22:02 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/529) 1:6 to QC_BAD because prior to dive start 07:22:02 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/529) 528 to QC_BAD because end of climb 07:22:02 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/529) 1:6 192:196 528 529 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:22:02 30 Jan 2017 UTC: INFO: QC.py(180): Changed (13/529) 1:6 192:196 528 529 to QC_BAD because changed corrected salin implies changed speed 07:22:02 30 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:22:02 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.05 cm/s 07:22:02 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.04 cm/s 07:22:02 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:22:02 30 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (74/529) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:22:02 30 Jan 2017 UTC: INFO: QC.py(180): Changed (1/529) 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:22:02 30 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (74/529) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 07:22:02 30 Jan 2017 UTC: INFO: QC.py(180): Changed (1/529) 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:22:02 30 Jan 2017 UTC: INFO: QC.py(180): Changed (13/529) 1:6 192:196 528 529 to QC_BAD because changed salinity implies changed optode oxygen 07:22:02 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:22:02 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 07:22:03 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 56: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.46% reduction 07:22:03 30 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.56 07:22:03 30 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:22:03 30 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:22:03 30 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:22:03 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 07:22:03 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:22:21 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 07:22:21 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:22:21 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:22:25 30 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:22:25 30 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:22:25 30 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:22:25 30 Jan 2017 UTC /home/sg626/p6260056.log /home/sg626/p6260056.eng /home/sg626/p6260056.asc /home/sg626/p6260056.pro /home/sg626/p6260056.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:22:25 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:22:25 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:22:25 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:22:25 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:22:25 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:22:25 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:22:25 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:22:25 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:22:25 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:22:25 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:22:25 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:22:25 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:22:25 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:22:25 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:22:25 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:22:25 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:22:25 30 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:22:25 30 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:22:25 30 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:22:25 30 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:22:25 30 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:22:25 30 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:22:25 30 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:22:25 30 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 07:22:25 30 Jan 2017 UTC 09:21:17 30 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 6242 09:21:17 30 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:23:39 30 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 6352 09:23:39 30 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:23:39 30 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:23:39 30 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:23:39 30 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:23:39 30 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170129232338 ] 09:23:39 30 Jan 2017 UTC: INFO: Base.py(1333): PID:6360 09:23:39 30 Jan 2017 UTC: INFO: Base.py(1375): Started processing 09:23:39 30 Jan 2017 UTC 09:23:39 30 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:23:39 30 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:23:39 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:23:39 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:23:39 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:57 calls_made:1 call_cycle:0 09:23:39 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:23:39 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:57 calls_made:1 call_cycle:0 09:23:39 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:23:39 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:57 calls_made:1 call_cycle:0 09:23:39 30 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:57 calls_made:1 call_cycle:0 2249.4990 -15800.2220 01/30/17 09:19:27 UTC) to sdrifter@soest.hawaii.edu 09:23:39 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:57 calls_made:1 call_cycle:0 09:23:39 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:23:39 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:57 calls_made:1 call_cycle:0 09:23:39 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:23:39 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:57 calls_made:1 call_cycle:0 09:23:39 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:23:39 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:57 calls_made:1 call_cycle:0 09:23:39 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:23:39 30 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:23:41 30 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:23:41 30 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:23:41 30 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:23:41 30 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:23:41 30 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:23:41 30 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:23:41 30 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0057lz 09:23:41 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0057lz.x00 09:23:41 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0057lz.x01 09:23:41 30 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0057lz.r in process_file_group 09:23:41 30 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260057.log 09:23:41 30 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:23:41 30 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0057dz 09:23:41 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0057dz.x00 09:23:41 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0057dz.x01 09:23:41 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0057dz.x02 09:23:41 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0057dz.x03 09:23:41 30 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0057dz.r in process_file_group 09:23:41 30 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [57] 09:23:41 30 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [57] 09:23:41 30 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260057) for profiles 09:23:41 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 09:23:41 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/525) 524 to QC_BAD because CT out of water 09:23:41 30 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.064m) 09:23:41 30 Jan 2017 UTC: INFO: QC.py(365): Changed (4/525) 2 3 523 524 to QC_PROBABLY_BAD because raw temperature spikes 09:23:41 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/525) 525 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 09:23:41 30 Jan 2017 UTC: INFO: QC.py(180): Changed (4/525) 2 3 523 524 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 09:23:41 30 Jan 2017 UTC: INFO: QC.py(180): Changed (2/525) 524 525 to QC_BAD because changed raw cond implies changed raw salinity 09:23:41 30 Jan 2017 UTC: INFO: QC.py(365): Changed (4/525) 2 3 523 524 to QC_INTERPOLATED because temperature spikes 09:23:41 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/525) 525 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 09:23:41 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/525) 188:192 to QC_BAD because slow apogee CT flow 09:23:41 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/525) 1:6 to QC_BAD because prior to dive start 09:23:41 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/525) 522 523 to QC_BAD because end of climb 09:23:41 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/525) 1:6 188:192 522:525 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:23:41 30 Jan 2017 UTC: INFO: QC.py(180): Changed (15/525) 1:6 188:192 522:525 to QC_BAD because changed corrected salin implies changed speed 09:23:42 30 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:23:42 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.63 cm/s 09:23:42 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 2.95 cm/s 09:23:42 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:23:42 30 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (71/525) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:23:42 30 Jan 2017 UTC: INFO: QC.py(180): Changed (4/525) 2 3 523 524 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:23:42 30 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (71/525) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 09:23:42 30 Jan 2017 UTC: INFO: QC.py(180): Changed (4/525) 2 3 523 524 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:23:42 30 Jan 2017 UTC: INFO: QC.py(180): Changed (15/525) 1:6 188:192 522:525 to QC_BAD because changed salinity implies changed optode oxygen 09:23:42 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:23:42 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 09:23:42 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 57: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.86% reduction 09:23:42 30 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.57 09:23:42 30 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:23:42 30 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:23:42 30 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:23:42 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 09:23:42 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 09:24:01 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 09:24:01 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 09:24:01 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 09:24:05 30 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:24:05 30 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:24:05 30 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:24:05 30 Jan 2017 UTC /home/sg626/p6260057.log /home/sg626/p6260057.eng /home/sg626/p6260057.asc /home/sg626/p6260057.pro /home/sg626/p6260057.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 09:24:05 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:24:05 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:24:05 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:24:05 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:24:05 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:24:05 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:24:05 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:24:05 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:24:05 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:24:05 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:24:05 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:24:05 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:24:05 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:24:05 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:24:05 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:24:05 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:24:05 30 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:24:05 30 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:24:05 30 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:24:05 30 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:24:05 30 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:24:05 30 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:24:05 30 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:24:05 30 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 09:24:05 30 Jan 2017 UTC 11:27:12 30 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 10498 11:27:12 30 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 11:29:44 30 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 10687 11:29:44 30 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:29:44 30 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 11:29:44 30 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 11:29:44 30 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:29:44 30 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170130012944 ] 11:29:44 30 Jan 2017 UTC: INFO: Base.py(1333): PID:10695 11:29:44 30 Jan 2017 UTC: INFO: Base.py(1375): Started processing 11:29:44 30 Jan 2017 UTC 11:29:44 30 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 11:29:45 30 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 11:29:45 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:29:45 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:29:45 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:58 calls_made:1 call_cycle:0 11:29:45 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:29:45 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:58 calls_made:1 call_cycle:0 11:29:45 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:29:45 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:58 calls_made:1 call_cycle:0 11:29:45 30 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:58 calls_made:1 call_cycle:0 2248.9970 -15759.6720 01/30/17 11:25:18 UTC) to sdrifter@soest.hawaii.edu 11:29:45 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:58 calls_made:1 call_cycle:0 11:29:45 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:29:45 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:58 calls_made:1 call_cycle:0 11:29:45 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:29:45 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:58 calls_made:1 call_cycle:0 11:29:45 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:29:45 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:58 calls_made:1 call_cycle:0 11:29:45 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:29:45 30 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:29:46 30 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:29:46 30 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:29:46 30 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 11:29:46 30 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:29:46 30 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:29:46 30 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 11:29:47 30 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0058lz 11:29:47 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0058lz.x00 11:29:47 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0058lz.x01 11:29:47 30 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0058lz.r in process_file_group 11:29:47 30 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260058.log 11:29:47 30 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 11:29:47 30 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0058dz 11:29:47 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0058dz.x00 11:29:47 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0058dz.x01 11:29:47 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0058dz.x02 11:29:47 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0058dz.x03 11:29:47 30 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0058dz.r in process_file_group 11:29:47 30 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [58] 11:29:47 30 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [58] 11:29:47 30 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260058) for profiles 11:29:47 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 11:29:47 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/547) 546 547 to QC_BAD because CT out of water 11:29:47 30 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.057m) 11:29:47 30 Jan 2017 UTC: INFO: QC.py(365): Changed (1/547) 197 to QC_PROBABLY_BAD because raw temperature spikes 11:29:47 30 Jan 2017 UTC: INFO: QC.py(180): Changed (1/547) 197 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 11:29:47 30 Jan 2017 UTC: INFO: QC.py(180): Changed (2/547) 546 547 to QC_BAD because changed raw cond implies changed raw salinity 11:29:47 30 Jan 2017 UTC: INFO: QC.py(365): Changed (1/547) 197 to QC_INTERPOLATED because temperature spikes 11:29:47 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/547) 195:199 to QC_BAD because slow apogee CT flow 11:29:47 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/547) 1:6 to QC_BAD because prior to dive start 11:29:47 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/547) 1:6 195:199 546 547 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 11:29:47 30 Jan 2017 UTC: INFO: QC.py(180): Changed (13/547) 1:6 195:199 546 547 to QC_BAD because changed corrected salin implies changed speed 11:29:48 30 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 11:29:48 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.25 cm/s 11:29:48 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.04 cm/s 11:29:48 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 11:29:48 30 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (73/547) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 11:29:48 30 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (73/547) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 11:29:48 30 Jan 2017 UTC: INFO: QC.py(180): Changed (13/547) 1:6 195:199 546 547 to QC_BAD because changed salinity implies changed optode oxygen 11:29:48 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 11:29:48 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 11:29:48 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 58: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.38% reduction 11:29:48 30 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.58 11:29:48 30 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:29:48 30 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:29:48 30 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:29:48 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 11:29:48 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 11:30:07 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 11:30:08 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 11:30:08 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 11:30:12 30 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:30:12 30 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:30:12 30 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:30:12 30 Jan 2017 UTC /home/sg626/p6260058.log /home/sg626/p6260058.eng /home/sg626/p6260058.asc /home/sg626/p6260058.pro /home/sg626/p6260058.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 11:30:12 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:30:12 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:30:12 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:30:12 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:30:12 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:30:12 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:30:12 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:30:12 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:30:12 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:30:12 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:30:12 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:30:12 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:30:12 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:30:12 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:30:12 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:30:12 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:30:12 30 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 11:30:12 30 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 11:30:12 30 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 11:30:12 30 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 11:30:12 30 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:30:12 30 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:30:12 30 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:30:12 30 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 11:30:12 30 Jan 2017 UTC 13:34:45 30 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 14374 13:34:45 30 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:37:12 30 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 14484 13:37:12 30 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:37:12 30 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:37:12 30 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:37:12 30 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:37:12 30 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170130033711 ] 13:37:12 30 Jan 2017 UTC: INFO: Base.py(1333): PID:14491 13:37:12 30 Jan 2017 UTC: INFO: Base.py(1375): Started processing 13:37:12 30 Jan 2017 UTC 13:37:12 30 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:37:12 30 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:37:12 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:37:12 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:37:12 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:59 calls_made:1 call_cycle:0 13:37:12 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:37:12 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:59 calls_made:1 call_cycle:0 13:37:12 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:37:12 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:59 calls_made:1 call_cycle:0 13:37:12 30 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:59 calls_made:1 call_cycle:0 2248.4130 -15759.2740 01/30/17 13:32:55 UTC) to sdrifter@soest.hawaii.edu 13:37:12 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:59 calls_made:1 call_cycle:0 13:37:12 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:37:12 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:59 calls_made:1 call_cycle:0 13:37:12 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:37:12 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:59 calls_made:1 call_cycle:0 13:37:12 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:37:12 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:59 calls_made:1 call_cycle:0 13:37:12 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:37:12 30 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:37:14 30 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:37:14 30 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:37:14 30 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:37:14 30 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:37:14 30 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:37:14 30 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:37:14 30 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0059lz 13:37:14 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0059lz.x00 13:37:14 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0059lz.x01 13:37:14 30 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0059lz.r in process_file_group 13:37:14 30 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260059.log 13:37:14 30 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:37:14 30 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0059dz 13:37:14 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0059dz.x00 13:37:14 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0059dz.x01 13:37:14 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0059dz.x02 13:37:14 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0059dz.x03 13:37:14 30 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0059dz.r in process_file_group 13:37:15 30 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [59] 13:37:15 30 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [59] 13:37:15 30 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260059) for profiles 13:37:15 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:37:15 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/556) 556 to QC_BAD because CT out of water 13:37:15 30 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.029m) 13:37:15 30 Jan 2017 UTC: INFO: QC.py(365): Changed (2/556) 2 203 to QC_PROBABLY_BAD because raw temperature spikes 13:37:15 30 Jan 2017 UTC: INFO: QC.py(377): Changed (1/556) 556 to QC_BAD because raw salinity below bound 13:37:15 30 Jan 2017 UTC: INFO: QC.py(180): Changed (2/556) 2 203 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:37:15 30 Jan 2017 UTC: INFO: QC.py(365): Changed (2/556) 2 203 to QC_INTERPOLATED because temperature spikes 13:37:15 30 Jan 2017 UTC: INFO: QC.py(377): Changed (1/556) 556 to QC_BAD because salinity below bound 13:37:15 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/556) 201:205 to QC_BAD because slow apogee CT flow 13:37:15 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/556) 1:6 to QC_BAD because prior to dive start 13:37:15 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/556) 554 555 to QC_BAD because end of climb 13:37:15 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/556) 1:6 201:205 554:556 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:37:15 30 Jan 2017 UTC: INFO: QC.py(180): Changed (14/556) 1:6 201:205 554:556 to QC_BAD because changed corrected salin implies changed speed 13:37:15 30 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:37:15 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.18 cm/s 13:37:15 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.09 cm/s 13:37:15 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:37:15 30 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (75/556) 154 155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:37:15 30 Jan 2017 UTC: INFO: QC.py(180): Changed (1/556) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:37:15 30 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (75/556) 154 155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:37:15 30 Jan 2017 UTC: INFO: QC.py(180): Changed (1/556) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:37:15 30 Jan 2017 UTC: INFO: QC.py(180): Changed (14/556) 1:6 201:205 554:556 to QC_BAD because changed salinity implies changed optode oxygen 13:37:15 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:37:15 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:37:16 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 59: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.52% reduction 13:37:16 30 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.59 13:37:16 30 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:37:16 30 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:37:16 30 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:37:16 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:37:16 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:37:35 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 13:37:35 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:37:35 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:37:40 30 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:37:40 30 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:37:40 30 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:37:40 30 Jan 2017 UTC /home/sg626/p6260059.log /home/sg626/p6260059.eng /home/sg626/p6260059.asc /home/sg626/p6260059.pro /home/sg626/p6260059.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:37:40 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:37:40 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:37:40 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:37:40 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:37:40 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:37:40 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:37:40 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:37:40 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:37:40 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:37:40 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:37:40 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:37:40 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:37:40 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:37:40 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:37:40 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:37:40 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:37:40 30 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:37:40 30 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:37:40 30 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:37:40 30 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:37:40 30 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:37:40 30 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:37:40 30 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:37:40 30 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 13:37:40 30 Jan 2017 UTC 15:39:38 30 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 18294 15:39:38 30 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 15:41:56 30 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 18489 15:41:56 30 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 15:41:56 30 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 15:41:56 30 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 15:41:56 30 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 15:41:56 30 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170130054155 ] 15:41:56 30 Jan 2017 UTC: INFO: Base.py(1333): PID:18497 15:41:56 30 Jan 2017 UTC: INFO: Base.py(1375): Started processing 15:41:56 30 Jan 2017 UTC 15:41:56 30 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 15:41:56 30 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 15:41:56 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 15:41:56 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:41:56 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:60 calls_made:1 call_cycle:0 15:41:56 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:41:56 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:60 calls_made:1 call_cycle:0 15:41:56 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:41:56 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:60 calls_made:1 call_cycle:0 15:41:56 30 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:60 calls_made:1 call_cycle:0 2248.4540 -15758.9620 01/30/17 15:37:47 UTC) to sdrifter@soest.hawaii.edu 15:41:56 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:60 calls_made:1 call_cycle:0 15:41:56 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:41:56 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:60 calls_made:1 call_cycle:0 15:41:56 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:41:56 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:60 calls_made:1 call_cycle:0 15:41:56 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:41:56 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:60 calls_made:1 call_cycle:0 15:41:56 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:41:56 30 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 15:41:57 30 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 15:41:58 30 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 15:41:58 30 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 15:41:58 30 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 15:41:58 30 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 15:41:58 30 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 15:41:58 30 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0060lz 15:41:58 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0060lz.x00 15:41:58 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0060lz.x01 15:41:58 30 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0060lz.r in process_file_group 15:41:58 30 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260060.log 15:41:58 30 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 15:41:58 30 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0060dz 15:41:58 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0060dz.x00 15:41:58 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0060dz.x01 15:41:58 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0060dz.x02 15:41:58 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0060dz.x03 15:41:58 30 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0060dz.r in process_file_group 15:41:58 30 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [60] 15:41:58 30 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [60] 15:41:58 30 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260060) for profiles 15:41:58 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 15:41:58 30 Jan 2017 UTC: INFO: QC.py(365): Changed (3/541) 2 3 193 to QC_PROBABLY_BAD because raw temperature spikes 15:41:58 30 Jan 2017 UTC: INFO: QC.py(408): Changed (1/541) 2 to QC_PROBABLY_BAD because raw conductivity spikes 15:41:58 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/541) 541 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 15:41:58 30 Jan 2017 UTC: INFO: QC.py(180): Changed (3/541) 2 3 193 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 15:41:58 30 Jan 2017 UTC: INFO: QC.py(180): Changed (1/541) 541 to QC_BAD because changed raw cond implies changed raw salinity 15:41:58 30 Jan 2017 UTC: INFO: QC.py(365): Changed (3/541) 2 3 193 to QC_INTERPOLATED because temperature spikes 15:41:58 30 Jan 2017 UTC: INFO: QC.py(408): Changed (1/541) 2 to QC_INTERPOLATED because conductivity spikes 15:41:58 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/541) 541 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 15:41:58 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/541) 191:195 to QC_BAD because slow apogee CT flow 15:41:58 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/541) 1:6 to QC_BAD because prior to dive start 15:41:58 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/541) 1:6 191:195 541 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 15:41:58 30 Jan 2017 UTC: INFO: QC.py(180): Changed (12/541) 1:6 191:195 541 to QC_BAD because changed corrected salin implies changed speed 15:41:59 30 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 15:41:59 30 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 60 interp_salinity data_points in_between 142 146 % suspect thermal-inertia points 144 15:41:59 30 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 60 interp_salinity data_points in_between 237 250 % suspect thermal-inertia points 240 15:41:59 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.99 cm/s 15:41:59 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 2.81 cm/s 15:41:59 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 15:41:59 30 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (74/541) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 15:41:59 30 Jan 2017 UTC: INFO: QC.py(180): Changed (2/541) 2 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 15:41:59 30 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (74/541) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 15:41:59 30 Jan 2017 UTC: INFO: QC.py(180): Changed (2/541) 2 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 15:41:59 30 Jan 2017 UTC: INFO: QC.py(180): Changed (12/541) 1:6 191:195 541 to QC_BAD because changed salinity implies changed optode oxygen 15:41:59 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 15:41:59 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 15:41:59 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 60: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.22% reduction 15:41:59 30 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.60 15:41:59 30 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 15:41:59 30 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 15:41:59 30 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 15:41:59 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 15:41:59 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 15:42:19 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 15:42:19 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 15:42:19 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 15:42:24 30 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 15:42:24 30 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 15:42:24 30 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 15:42:24 30 Jan 2017 UTC /home/sg626/p6260060.log /home/sg626/p6260060.eng /home/sg626/p6260060.asc /home/sg626/p6260060.pro /home/sg626/p6260060.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 15:42:24 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 15:42:24 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:42:24 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:42:24 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:42:24 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:42:24 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:42:24 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:42:24 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:42:24 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 15:42:24 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:42:24 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:42:24 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:42:24 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:42:24 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:42:24 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:42:24 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:42:24 30 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 15:42:24 30 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 15:42:24 30 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 15:42:24 30 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 15:42:24 30 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 15:42:24 30 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 15:42:24 30 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 15:42:24 30 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 15:42:24 30 Jan 2017 UTC 17:46:14 30 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 21898 17:46:14 30 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:48:37 30 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 22014 17:48:37 30 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:48:37 30 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:48:37 30 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:48:37 30 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:48:37 30 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170130074836 ] 17:48:37 30 Jan 2017 UTC: INFO: Base.py(1333): PID:22022 17:48:37 30 Jan 2017 UTC: INFO: Base.py(1375): Started processing 17:48:37 30 Jan 2017 UTC 17:48:37 30 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:48:37 30 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:48:37 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:48:37 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:48:37 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:61 calls_made:1 call_cycle:0 17:48:37 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:48:37 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:61 calls_made:1 call_cycle:0 17:48:37 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:48:37 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:61 calls_made:1 call_cycle:0 17:48:37 30 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:61 calls_made:1 call_cycle:0 2248.8390 -15758.3480 01/30/17 17:44:24 UTC) to sdrifter@soest.hawaii.edu 17:48:37 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:61 calls_made:1 call_cycle:0 17:48:37 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:48:37 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:61 calls_made:1 call_cycle:0 17:48:37 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:48:37 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:61 calls_made:1 call_cycle:0 17:48:37 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:48:37 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:61 calls_made:1 call_cycle:0 17:48:37 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:48:37 30 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:48:39 30 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:48:39 30 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:48:39 30 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:48:39 30 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:48:39 30 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:48:39 30 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:48:39 30 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0061lz 17:48:39 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0061lz.x00 17:48:39 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0061lz.x01 17:48:39 30 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0061lz.r in process_file_group 17:48:39 30 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260061.log 17:48:39 30 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:48:39 30 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0061dz 17:48:39 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0061dz.x00 17:48:39 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0061dz.x01 17:48:39 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0061dz.x02 17:48:39 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0061dz.x03 17:48:39 30 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0061dz.r in process_file_group 17:48:39 30 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [61] 17:48:39 30 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [61] 17:48:39 30 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260061) for profiles 17:48:39 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:48:39 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/539) 539 to QC_BAD because CT out of water 17:48:39 30 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.010m) 17:48:39 30 Jan 2017 UTC: INFO: QC.py(365): Changed (2/539) 3 199 to QC_PROBABLY_BAD because raw temperature spikes 17:48:39 30 Jan 2017 UTC: INFO: QC.py(377): Changed (1/539) 539 to QC_BAD because raw salinity below bound 17:48:39 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/539) 538 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 17:48:39 30 Jan 2017 UTC: INFO: QC.py(180): Changed (2/539) 3 199 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:48:39 30 Jan 2017 UTC: INFO: QC.py(180): Changed (1/539) 538 to QC_BAD because changed raw cond implies changed raw salinity 17:48:39 30 Jan 2017 UTC: INFO: QC.py(365): Changed (2/539) 3 199 to QC_INTERPOLATED because temperature spikes 17:48:39 30 Jan 2017 UTC: INFO: QC.py(377): Changed (1/539) 539 to QC_BAD because salinity below bound 17:48:39 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/539) 538 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 17:48:39 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/539) 197:201 to QC_BAD because slow apogee CT flow 17:48:39 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/539) 1:6 to QC_BAD because prior to dive start 17:48:39 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/539) 537 to QC_BAD because end of climb 17:48:39 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/539) 1:6 197:201 537:539 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:48:39 30 Jan 2017 UTC: INFO: QC.py(180): Changed (14/539) 1:6 197:201 537:539 to QC_BAD because changed corrected salin implies changed speed 17:48:40 30 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:48:40 30 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 61 interp_salinity data_points in_between 280 290 % suspect thermal-inertia points 284 17:48:40 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.22 cm/s 17:48:40 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 2.78 cm/s 17:48:40 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:48:40 30 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (77/539) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:48:40 30 Jan 2017 UTC: INFO: QC.py(180): Changed (1/539) 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:48:40 30 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (77/539) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:48:40 30 Jan 2017 UTC: INFO: QC.py(180): Changed (1/539) 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:48:40 30 Jan 2017 UTC: INFO: QC.py(180): Changed (14/539) 1:6 197:201 537:539 to QC_BAD because changed salinity implies changed optode oxygen 17:48:40 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:48:40 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:48:40 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 61: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.60% reduction 17:48:40 30 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.61 17:48:40 30 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:48:40 30 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:48:40 30 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:48:40 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:48:40 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:49:00 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 17:49:00 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:49:00 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:49:05 30 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:49:05 30 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:49:05 30 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:49:05 30 Jan 2017 UTC /home/sg626/p6260061.log /home/sg626/p6260061.eng /home/sg626/p6260061.asc /home/sg626/p6260061.pro /home/sg626/p6260061.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:49:05 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:49:05 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:49:05 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:49:05 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:49:05 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:49:05 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:49:05 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:49:05 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:49:05 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:49:05 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:49:05 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:49:05 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:49:05 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:49:05 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:49:05 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:49:05 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:49:05 30 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:49:05 30 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:49:05 30 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:49:05 30 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:49:05 30 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:49:05 30 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:49:05 30 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:49:05 30 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 17:49:05 30 Jan 2017 UTC 19:47:27 30 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 25689 19:47:27 30 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:49:46 30 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 25799 19:49:46 30 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:49:46 30 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:49:46 30 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:49:46 30 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:49:46 30 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170130094946 ] 19:49:46 30 Jan 2017 UTC: INFO: Base.py(1333): PID:25806 19:49:46 30 Jan 2017 UTC: INFO: Base.py(1375): Started processing 19:49:46 30 Jan 2017 UTC 19:49:46 30 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:49:47 30 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:49:47 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:49:47 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:49:47 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:62 calls_made:1 call_cycle:0 19:49:47 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:49:47 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:62 calls_made:1 call_cycle:0 19:49:47 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:49:47 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:62 calls_made:1 call_cycle:0 19:49:47 30 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:62 calls_made:1 call_cycle:0 2248.9420 -15758.2290 01/30/17 19:45:37 UTC) to sdrifter@soest.hawaii.edu 19:49:47 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:62 calls_made:1 call_cycle:0 19:49:47 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:49:47 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:62 calls_made:1 call_cycle:0 19:49:47 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:49:47 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:62 calls_made:1 call_cycle:0 19:49:47 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:49:47 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:62 calls_made:1 call_cycle:0 19:49:47 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:49:47 30 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:49:48 30 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:49:48 30 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:49:48 30 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:49:48 30 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:49:48 30 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:49:48 30 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:49:48 30 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0062lz 19:49:48 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0062lz.x00 19:49:48 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0062lz.x01 19:49:48 30 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0062lz.r in process_file_group 19:49:48 30 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260062.log 19:49:48 30 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:49:48 30 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0062dz 19:49:48 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0062dz.x00 19:49:48 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0062dz.x01 19:49:48 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0062dz.x02 19:49:48 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0062dz.x03 19:49:48 30 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0062dz.r in process_file_group 19:49:49 30 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [62] 19:49:49 30 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [62] 19:49:49 30 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260062) for profiles 19:49:49 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 19:49:49 30 Jan 2017 UTC: INFO: QC.py(365): Changed (1/516) 189 to QC_PROBABLY_BAD because raw temperature spikes 19:49:49 30 Jan 2017 UTC: INFO: QC.py(408): Changed (1/516) 515 to QC_PROBABLY_BAD because raw conductivity spikes 19:49:49 30 Jan 2017 UTC: INFO: QC.py(180): Changed (1/516) 189 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:49:49 30 Jan 2017 UTC: INFO: QC.py(180): Changed (1/516) 515 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 19:49:49 30 Jan 2017 UTC: INFO: QC.py(365): Changed (1/516) 189 to QC_INTERPOLATED because temperature spikes 19:49:49 30 Jan 2017 UTC: INFO: QC.py(408): Changed (1/516) 515 to QC_INTERPOLATED because conductivity spikes 19:49:49 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/516) 187:192 to QC_BAD because slow apogee CT flow 19:49:49 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/516) 1:6 to QC_BAD because prior to dive start 19:49:49 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (3/516) 514:516 to QC_BAD because end of climb 19:49:49 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/516) 1:6 187:192 514:516 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:49:49 30 Jan 2017 UTC: INFO: QC.py(180): Changed (15/516) 1:6 187:192 514:516 to QC_BAD because changed corrected salin implies changed speed 19:49:49 30 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:49:49 30 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 62 interp_salinity data_points in_between 273 282 % suspect thermal-inertia points 278 19:49:49 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.68 cm/s 19:49:49 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 2.86 cm/s 19:49:49 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:49:49 30 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (74/516) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:49:49 30 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (74/516) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 19:49:49 30 Jan 2017 UTC: INFO: QC.py(180): Changed (15/516) 1:6 187:192 514:516 to QC_BAD because changed salinity implies changed optode oxygen 19:49:49 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:49:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:49:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:49:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:49:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:49:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:49:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:49:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:49:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:49:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:49:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:49:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:49:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:49:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:49:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:49:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:49:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:49:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:49:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:49:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:49:49 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:49:50 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:49:50 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:49:50 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:49:50 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:49:50 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:49:50 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:49:50 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:49:50 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:49:50 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:49:50 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:49:50 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:49:50 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 19:49:50 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 62: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.91% reduction 19:49:50 30 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.62 19:49:50 30 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:49:50 30 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:49:50 30 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:49:50 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 19:49:50 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 19:50:10 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 19:50:11 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 19:50:11 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 19:50:15 30 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:50:15 30 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:50:15 30 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:50:15 30 Jan 2017 UTC /home/sg626/p6260062.log /home/sg626/p6260062.eng /home/sg626/p6260062.asc /home/sg626/p6260062.pro /home/sg626/p6260062.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 19:50:15 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:50:15 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:50:15 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:50:15 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:50:15 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:50:15 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:50:15 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:50:15 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:50:15 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:50:15 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:50:15 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:50:15 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:50:15 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:50:15 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:50:15 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:50:15 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:50:15 30 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:50:15 30 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:50:15 30 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:50:15 30 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:50:15 30 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:50:15 30 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:50:15 30 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:50:15 30 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 19:50:15 30 Jan 2017 UTC 21:52:22 30 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 29697 21:52:22 30 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:54:50 30 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 30004 21:54:50 30 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:54:50 30 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:54:50 30 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:54:50 30 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:54:50 30 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170130115449 ] 21:54:50 30 Jan 2017 UTC: INFO: Base.py(1333): PID:30012 21:54:50 30 Jan 2017 UTC: INFO: Base.py(1375): Started processing 21:54:50 30 Jan 2017 UTC 21:54:50 30 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:54:50 30 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:54:50 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:54:50 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:54:50 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:63 calls_made:1 call_cycle:0 21:54:50 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:54:50 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:63 calls_made:1 call_cycle:0 21:54:50 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:54:50 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:63 calls_made:1 call_cycle:0 21:54:50 30 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:63 calls_made:1 call_cycle:0 2249.2700 -15757.2370 01/30/17 21:50:31 UTC) to sdrifter@soest.hawaii.edu 21:54:50 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:63 calls_made:1 call_cycle:0 21:54:50 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:54:50 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:63 calls_made:1 call_cycle:0 21:54:50 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:54:50 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:63 calls_made:1 call_cycle:0 21:54:50 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:54:50 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:63 calls_made:1 call_cycle:0 21:54:50 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:54:50 30 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:54:52 30 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:54:52 30 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:54:52 30 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:54:52 30 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:54:52 30 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:54:52 30 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:54:52 30 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0063lz 21:54:52 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0063lz.x00 21:54:52 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0063lz.x01 21:54:52 30 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0063lz.r in process_file_group 21:54:52 30 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260063.log 21:54:52 30 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:54:52 30 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0063dz 21:54:52 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0063dz.x00 21:54:52 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0063dz.x01 21:54:52 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0063dz.x02 21:54:52 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0063dz.x03 21:54:52 30 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0063dz.r in process_file_group 21:54:52 30 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [63] 21:54:52 30 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [63] 21:54:52 30 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260063) for profiles 21:54:52 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:54:52 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/542) 541 to QC_BAD because CT out of water 21:54:52 30 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.035m) 21:54:52 30 Jan 2017 UTC: INFO: QC.py(180): Changed (1/542) 541 to QC_BAD because changed raw cond implies changed raw salinity 21:54:52 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/542) 195:199 to QC_BAD because slow apogee CT flow 21:54:52 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/542) 1:6 to QC_BAD because prior to dive start 21:54:52 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/542) 540 542 to QC_BAD because end of climb 21:54:52 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/542) 1:6 195:199 540:542 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:54:52 30 Jan 2017 UTC: INFO: QC.py(180): Changed (14/542) 1:6 195:199 540:542 to QC_BAD because changed corrected salin implies changed speed 21:54:53 30 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:54:53 30 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 63 interp_salinity data_points in_between 281 283 % suspect thermal-inertia points 282 21:54:53 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.69 cm/s 21:54:53 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 2.83 cm/s 21:54:53 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:54:53 30 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (73/542) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:54:53 30 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (73/542) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:54:53 30 Jan 2017 UTC: INFO: QC.py(180): Changed (14/542) 1:6 195:199 540:542 to QC_BAD because changed salinity implies changed optode oxygen 21:54:53 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:54:53 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:54:53 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 63: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.58% reduction 21:54:53 30 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.63 21:54:53 30 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:54:53 30 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:54:53 30 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:54:53 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:54:53 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 21:55:14 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 21:55:14 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 21:55:14 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 21:55:19 30 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:55:19 30 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:55:19 30 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:55:19 30 Jan 2017 UTC /home/sg626/p6260063.log /home/sg626/p6260063.eng /home/sg626/p6260063.asc /home/sg626/p6260063.pro /home/sg626/p6260063.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 21:55:19 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:55:19 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:55:19 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:55:19 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:55:19 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:55:19 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:55:19 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:55:19 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:55:19 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:55:19 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:55:19 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:55:19 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:55:19 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:55:19 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:55:19 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:55:19 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:55:19 30 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:55:19 30 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:55:19 30 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:55:19 30 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:55:19 30 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:55:19 30 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:55:19 30 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:55:19 30 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 21:55:19 30 Jan 2017 UTC 23:54:06 30 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 2172 23:54:06 30 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 23:56:30 30 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 2284 23:56:30 30 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:56:30 30 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:56:30 30 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:56:30 30 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:56:30 30 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170130135630 ] 23:56:30 30 Jan 2017 UTC: INFO: Base.py(1333): PID:2292 23:56:30 30 Jan 2017 UTC: INFO: Base.py(1375): Started processing 23:56:30 30 Jan 2017 UTC 23:56:30 30 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:56:31 30 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:56:31 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:56:31 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:56:31 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:64 calls_made:2 call_cycle:0 23:56:31 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:56:31 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:64 calls_made:2 call_cycle:0 23:56:31 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:56:31 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:64 calls_made:2 call_cycle:0 23:56:31 30 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:64 calls_made:2 call_cycle:0 2249.1680 -15757.1040 01/30/17 23:50:32 UTC) to sdrifter@soest.hawaii.edu 23:56:31 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:64 calls_made:2 call_cycle:0 23:56:31 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:56:31 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:64 calls_made:2 call_cycle:0 23:56:31 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:56:31 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:64 calls_made:2 call_cycle:0 23:56:31 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:56:31 30 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:64 calls_made:2 call_cycle:0 23:56:31 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:56:31 30 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:56:32 30 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:56:32 30 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:56:32 30 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:56:32 30 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:56:32 30 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:56:32 30 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:56:32 30 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0064lz 23:56:32 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0064lz.x00 23:56:32 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0064lz.x01 23:56:32 30 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0064lz.r in process_file_group 23:56:32 30 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260064.log 23:56:32 30 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:56:32 30 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0064dz 23:56:32 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0064dz.x00 23:56:32 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0064dz.x01 23:56:32 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0064dz.x02 23:56:32 30 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0064dz.x03 23:56:32 30 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0064dz.r in process_file_group 23:56:33 30 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [64] 23:56:33 30 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [64] 23:56:33 30 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260064) for profiles 23:56:33 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 23:56:33 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/509) 192:197 to QC_BAD because slow apogee CT flow 23:56:33 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/509) 1:6 to QC_BAD because prior to dive start 23:56:33 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (3/509) 507:509 to QC_BAD because end of climb 23:56:33 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/509) 1:6 192:197 507:509 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 23:56:33 30 Jan 2017 UTC: INFO: QC.py(180): Changed (15/509) 1:6 192:197 507:509 to QC_BAD because changed corrected salin implies changed speed 23:56:33 30 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 23:56:33 30 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 64 interp_salinity data_points in_between 277 280 % suspect thermal-inertia points 279 23:56:33 30 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 64 interp_salinity data_points in_between 282 286 % suspect thermal-inertia points 282:284 23:56:33 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.41 cm/s 23:56:33 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 2.84 cm/s 23:56:33 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 23:56:33 30 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (73/509) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 23:56:33 30 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (73/509) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 23:56:33 30 Jan 2017 UTC: INFO: QC.py(180): Changed (15/509) 1:6 192:197 507:509 to QC_BAD because changed salinity implies changed optode oxygen 23:56:33 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 23:56:33 30 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 23:56:34 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 64: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.95% reduction 23:56:34 30 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.64 23:56:34 30 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:56:34 30 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:56:34 30 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:56:34 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 23:56:34 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 23:56:55 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 23:56:55 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 23:56:55 30 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 23:57:00 30 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:57:00 30 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:57:00 30 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:57:00 30 Jan 2017 UTC /home/sg626/p6260064.log /home/sg626/p6260064.eng /home/sg626/p6260064.asc /home/sg626/p6260064.pro /home/sg626/p6260064.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 23:57:00 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:57:00 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:57:00 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:57:00 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:57:00 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:57:00 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:57:00 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:57:00 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:57:00 30 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:57:00 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:57:00 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:57:00 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:57:00 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:57:00 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:57:00 30 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:57:00 30 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:57:00 30 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:57:00 30 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:57:00 30 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:57:00 30 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:57:00 30 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:57:00 30 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:57:00 30 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:57:00 30 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 23:57:00 30 Jan 2017 UTC 01:58:19 31 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 5968 01:58:19 31 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:00:42 31 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 6242 02:00:42 31 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:00:42 31 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:00:42 31 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:00:42 31 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:00:42 31 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170130160041 ] 02:00:42 31 Jan 2017 UTC: INFO: Base.py(1333): PID:6250 02:00:42 31 Jan 2017 UTC: INFO: Base.py(1375): Started processing 02:00:42 31 Jan 2017 UTC 02:00:42 31 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:00:42 31 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:00:42 31 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:00:42 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:00:42 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:65 calls_made:1 call_cycle:0 02:00:42 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:00:42 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:65 calls_made:1 call_cycle:0 02:00:42 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:00:42 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:65 calls_made:1 call_cycle:0 02:00:42 31 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:65 calls_made:1 call_cycle:0 2248.9970 -15757.2180 01/31/17 01:56:31 UTC) to sdrifter@soest.hawaii.edu 02:00:42 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:65 calls_made:1 call_cycle:0 02:00:42 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:00:42 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:65 calls_made:1 call_cycle:0 02:00:42 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:00:42 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:65 calls_made:1 call_cycle:0 02:00:42 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:00:42 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:65 calls_made:1 call_cycle:0 02:00:42 31 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:00:42 31 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:00:44 31 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:00:44 31 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:00:44 31 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:00:44 31 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:00:44 31 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:00:44 31 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:00:44 31 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0065lz 02:00:44 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0065lz.x00 02:00:44 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0065lz.x01 02:00:44 31 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0065lz.r in process_file_group 02:00:44 31 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260065.log 02:00:44 31 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 02:00:44 31 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0065dz 02:00:44 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0065dz.x00 02:00:44 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0065dz.x01 02:00:44 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0065dz.x02 02:00:44 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0065dz.x03 02:00:44 31 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0065dz.r in process_file_group 02:00:45 31 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [65] 02:00:45 31 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [65] 02:00:45 31 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260065) for profiles 02:00:45 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 02:00:45 31 Jan 2017 UTC: INFO: QC.py(365): Changed (3/530) 3 4 199 to QC_PROBABLY_BAD because raw temperature spikes 02:00:45 31 Jan 2017 UTC: INFO: QC.py(180): Changed (3/530) 3 4 199 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:00:45 31 Jan 2017 UTC: INFO: QC.py(365): Changed (3/530) 3 4 199 to QC_INTERPOLATED because temperature spikes 02:00:45 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/530) 197:202 to QC_BAD because slow apogee CT flow 02:00:45 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/530) 1:6 to QC_BAD because prior to dive start 02:00:45 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/530) 1:6 197:202 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:00:45 31 Jan 2017 UTC: INFO: QC.py(180): Changed (12/530) 1:6 197:202 to QC_BAD because changed corrected salin implies changed speed 02:00:45 31 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:00:45 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.27 cm/s 02:00:45 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 2.78 cm/s 02:00:45 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:00:45 31 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (76/530) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:00:45 31 Jan 2017 UTC: INFO: QC.py(180): Changed (2/530) 3 4 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:00:45 31 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (76/530) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 02:00:45 31 Jan 2017 UTC: INFO: QC.py(180): Changed (2/530) 3 4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:00:45 31 Jan 2017 UTC: INFO: QC.py(180): Changed (12/530) 1:6 197:202 to QC_BAD because changed salinity implies changed optode oxygen 02:00:45 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:00:45 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 02:00:46 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 65: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.26% reduction 02:00:46 31 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.65 02:00:46 31 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:00:46 31 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:00:46 31 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:00:46 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 02:00:46 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 02:01:07 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 02:01:08 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 02:01:08 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 02:01:12 31 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:01:12 31 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:01:12 31 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:01:12 31 Jan 2017 UTC /home/sg626/p6260065.log /home/sg626/p6260065.eng /home/sg626/p6260065.asc /home/sg626/p6260065.pro /home/sg626/p6260065.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 02:01:12 31 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:01:12 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:01:12 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:01:12 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:01:12 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:01:12 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:01:12 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:01:12 31 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:01:12 31 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:01:12 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:01:12 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:01:12 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:01:12 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:01:12 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:01:12 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:01:12 31 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:01:12 31 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:01:12 31 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:01:12 31 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:01:12 31 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:01:12 31 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:01:12 31 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:01:12 31 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:01:12 31 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 02:01:12 31 Jan 2017 UTC 04:05:03 31 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 11719 04:05:03 31 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:07:32 31 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 11832 04:07:32 31 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:07:32 31 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:07:32 31 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:07:32 31 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:07:32 31 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170130180731 ] 04:07:32 31 Jan 2017 UTC: INFO: Base.py(1333): PID:11840 04:07:32 31 Jan 2017 UTC: INFO: Base.py(1375): Started processing 04:07:32 31 Jan 2017 UTC 04:07:32 31 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:07:32 31 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:07:32 31 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:07:32 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:07:32 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:66 calls_made:1 call_cycle:0 04:07:32 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:07:32 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:66 calls_made:1 call_cycle:0 04:07:32 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:07:32 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:66 calls_made:1 call_cycle:0 04:07:32 31 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:66 calls_made:1 call_cycle:0 2249.1350 -15756.5970 01/31/17 04:03:14 UTC) to sdrifter@soest.hawaii.edu 04:07:33 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:66 calls_made:1 call_cycle:0 04:07:33 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:07:33 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:66 calls_made:1 call_cycle:0 04:07:33 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:07:33 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:66 calls_made:1 call_cycle:0 04:07:33 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:07:33 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:66 calls_made:1 call_cycle:0 04:07:33 31 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:07:33 31 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:07:34 31 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:07:34 31 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:07:34 31 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:07:34 31 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:07:34 31 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:07:34 31 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:07:34 31 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0066lz 04:07:34 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0066lz.x00 04:07:34 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0066lz.x01 04:07:34 31 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0066lz.r in process_file_group 04:07:34 31 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260066.log 04:07:34 31 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:07:34 31 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0066dz 04:07:34 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0066dz.x00 04:07:34 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0066dz.x01 04:07:34 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0066dz.x02 04:07:34 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0066dz.x03 04:07:34 31 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0066dz.r in process_file_group 04:07:35 31 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [66] 04:07:35 31 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [66] 04:07:35 31 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260066) for profiles 04:07:35 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 04:07:35 31 Jan 2017 UTC: INFO: QC.py(365): Changed (1/531) 530 to QC_PROBABLY_BAD because raw temperature spikes 04:07:35 31 Jan 2017 UTC: INFO: QC.py(408): Changed (1/531) 530 to QC_PROBABLY_BAD because raw conductivity spikes 04:07:35 31 Jan 2017 UTC: INFO: QC.py(180): Changed (1/531) 530 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:07:35 31 Jan 2017 UTC: INFO: QC.py(365): Changed (1/531) 530 to QC_INTERPOLATED because temperature spikes 04:07:35 31 Jan 2017 UTC: INFO: QC.py(408): Changed (1/531) 530 to QC_INTERPOLATED because conductivity spikes 04:07:35 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/531) 197:201 to QC_BAD because slow apogee CT flow 04:07:35 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/531) 1:6 to QC_BAD because prior to dive start 04:07:35 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/531) 530 531 to QC_BAD because end of climb 04:07:35 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/531) 1:6 197:201 530 531 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:07:35 31 Jan 2017 UTC: INFO: QC.py(180): Changed (13/531) 1:6 197:201 530 531 to QC_BAD because changed corrected salin implies changed speed 04:07:35 31 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:07:35 31 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 66 interp_salinity data_points in_between 282 291 % suspect thermal-inertia points 284 285 04:07:35 31 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 66 interp_salinity data_points in_between 406 409 % suspect thermal-inertia points 408 04:07:35 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.20 cm/s 04:07:35 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.28 cm/s 04:07:35 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:07:35 31 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (79/531) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:07:35 31 Jan 2017 UTC: INFO: QC.py(180): Changed (1/531) 530 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:07:35 31 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (79/531) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 04:07:35 31 Jan 2017 UTC: INFO: QC.py(180): Changed (1/531) 530 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:07:35 31 Jan 2017 UTC: INFO: QC.py(180): Changed (13/531) 1:6 197:201 530 531 to QC_BAD because changed salinity implies changed optode oxygen 04:07:35 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:07:35 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 04:07:36 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 66: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.45% reduction 04:07:36 31 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.66 04:07:36 31 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:07:36 31 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:07:36 31 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:07:36 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 04:07:36 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 04:07:57 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 04:07:58 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 04:07:58 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 04:08:02 31 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:08:02 31 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:08:02 31 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:08:02 31 Jan 2017 UTC /home/sg626/p6260066.log /home/sg626/p6260066.eng /home/sg626/p6260066.asc /home/sg626/p6260066.pro /home/sg626/p6260066.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 04:08:02 31 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:08:02 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:08:02 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:08:02 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:08:02 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:08:02 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:08:02 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:08:02 31 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:08:02 31 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:08:02 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:08:02 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:08:02 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:08:02 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:08:02 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:08:02 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:08:02 31 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:08:02 31 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:08:02 31 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:08:02 31 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:08:02 31 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:08:02 31 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:08:02 31 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:08:02 31 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:08:02 31 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 04:08:02 31 Jan 2017 UTC 06:09:57 31 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 15730 06:09:57 31 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:12:26 31 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 15995 06:12:26 31 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:12:26 31 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 06:12:26 31 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 06:12:26 31 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:12:26 31 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170130201225 ] 06:12:26 31 Jan 2017 UTC: INFO: Base.py(1333): PID:16002 06:12:26 31 Jan 2017 UTC: INFO: Base.py(1375): Started processing 06:12:26 31 Jan 2017 UTC 06:12:26 31 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 06:12:26 31 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 06:12:26 31 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:12:26 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:12:26 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:67 calls_made:1 call_cycle:0 06:12:26 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:12:26 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:67 calls_made:1 call_cycle:0 06:12:26 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:12:26 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:67 calls_made:1 call_cycle:0 06:12:26 31 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:67 calls_made:1 call_cycle:0 2249.7490 -15755.6370 01/31/17 06:08:00 UTC) to sdrifter@soest.hawaii.edu 06:12:26 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:67 calls_made:1 call_cycle:0 06:12:26 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:12:26 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:67 calls_made:1 call_cycle:0 06:12:26 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:12:26 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:67 calls_made:1 call_cycle:0 06:12:26 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:12:26 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:67 calls_made:1 call_cycle:0 06:12:26 31 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:12:26 31 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:12:28 31 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:12:28 31 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:12:28 31 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 06:12:28 31 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:12:28 31 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:12:28 31 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 06:12:28 31 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0067lz 06:12:28 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0067lz.x00 06:12:28 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0067lz.x01 06:12:28 31 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0067lz.r in process_file_group 06:12:28 31 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260067.log 06:12:28 31 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 06:12:28 31 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0067dz 06:12:28 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0067dz.x00 06:12:28 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0067dz.x01 06:12:28 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0067dz.x02 06:12:28 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0067dz.x03 06:12:28 31 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0067dz.r in process_file_group 06:12:28 31 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [67] 06:12:28 31 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [67] 06:12:28 31 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260067) for profiles 06:12:28 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 06:12:28 31 Jan 2017 UTC: INFO: QC.py(365): Changed (2/525) 2 186 to QC_PROBABLY_BAD because raw temperature spikes 06:12:28 31 Jan 2017 UTC: INFO: QC.py(408): Changed (1/525) 186 to QC_PROBABLY_BAD because raw conductivity spikes 06:12:28 31 Jan 2017 UTC: INFO: QC.py(180): Changed (2/525) 2 186 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 06:12:28 31 Jan 2017 UTC: INFO: QC.py(365): Changed (2/525) 2 186 to QC_INTERPOLATED because temperature spikes 06:12:28 31 Jan 2017 UTC: INFO: QC.py(408): Changed (1/525) 186 to QC_INTERPOLATED because conductivity spikes 06:12:28 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/525) 184:188 to QC_BAD because slow apogee CT flow 06:12:28 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/525) 1:6 to QC_BAD because prior to dive start 06:12:28 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/525) 1:6 184:188 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 06:12:28 31 Jan 2017 UTC: INFO: QC.py(180): Changed (11/525) 1:6 184:188 to QC_BAD because changed corrected salin implies changed speed 06:12:29 31 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 06:12:29 31 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 67 interp_salinity data_points in_between 329 332 % suspect thermal-inertia points 330 331 06:12:29 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.27 cm/s 06:12:29 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.00 cm/s 06:12:29 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 06:12:29 31 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (77/525) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 06:12:29 31 Jan 2017 UTC: INFO: QC.py(180): Changed (2/525) 2 186 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 06:12:29 31 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (77/525) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 06:12:29 31 Jan 2017 UTC: INFO: QC.py(180): Changed (2/525) 2 186 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 06:12:29 31 Jan 2017 UTC: INFO: QC.py(180): Changed (11/525) 1:6 184:188 to QC_BAD because changed salinity implies changed optode oxygen 06:12:29 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 06:12:29 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 06:12:29 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 67: Data set size for profile, binned and kkyy files reduced by 11 points, a 2.10% reduction 06:12:29 31 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.67 06:12:29 31 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:12:29 31 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:12:29 31 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:12:30 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 06:12:30 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 06:12:51 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 06:12:52 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 06:12:52 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 06:12:57 31 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:12:57 31 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:12:57 31 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 06:12:57 31 Jan 2017 UTC /home/sg626/p6260067.log /home/sg626/p6260067.eng /home/sg626/p6260067.asc /home/sg626/p6260067.pro /home/sg626/p6260067.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 06:12:57 31 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:12:57 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:12:57 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:12:57 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:12:57 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:12:57 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:12:57 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:12:57 31 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:12:57 31 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:12:57 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:12:57 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:12:57 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:12:57 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:12:57 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:12:57 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:12:57 31 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:12:57 31 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 06:12:57 31 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 06:12:57 31 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 06:12:57 31 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 06:12:57 31 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:12:57 31 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:12:57 31 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:12:57 31 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 06:12:57 31 Jan 2017 UTC 08:14:12 31 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 19598 08:14:12 31 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:16:38 31 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 19701 08:16:38 31 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:16:38 31 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:16:38 31 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:16:38 31 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:16:38 31 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170130221637 ] 08:16:38 31 Jan 2017 UTC: INFO: Base.py(1333): PID:19709 08:16:38 31 Jan 2017 UTC: INFO: Base.py(1375): Started processing 08:16:38 31 Jan 2017 UTC 08:16:38 31 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:16:38 31 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:16:38 31 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:16:38 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:16:38 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:68 calls_made:1 call_cycle:0 08:16:38 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:16:38 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:68 calls_made:1 call_cycle:0 08:16:38 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:16:38 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:68 calls_made:1 call_cycle:0 08:16:38 31 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:68 calls_made:1 call_cycle:0 2250.6270 -15755.5190 01/31/17 08:12:21 UTC) to sdrifter@soest.hawaii.edu 08:16:38 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:68 calls_made:1 call_cycle:0 08:16:38 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:16:38 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:68 calls_made:1 call_cycle:0 08:16:38 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:16:38 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:68 calls_made:1 call_cycle:0 08:16:38 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:16:38 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:68 calls_made:1 call_cycle:0 08:16:38 31 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:16:38 31 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:16:40 31 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:16:40 31 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:16:40 31 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:16:40 31 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:16:40 31 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:16:40 31 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:16:40 31 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0068lz 08:16:40 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0068lz.x00 08:16:40 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0068lz.x01 08:16:40 31 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0068lz.r in process_file_group 08:16:40 31 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260068.log 08:16:40 31 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:16:40 31 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0068dz 08:16:40 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0068dz.x00 08:16:40 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0068dz.x01 08:16:40 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0068dz.x02 08:16:40 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0068dz.x03 08:16:40 31 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0068dz.r in process_file_group 08:16:40 31 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [68] 08:16:40 31 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [68] 08:16:40 31 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260068) for profiles 08:16:40 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:16:40 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/518) 518 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 08:16:40 31 Jan 2017 UTC: INFO: QC.py(180): Changed (1/518) 518 to QC_BAD because changed raw cond implies changed raw salinity 08:16:40 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/518) 518 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 08:16:41 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/518) 185:189 to QC_BAD because slow apogee CT flow 08:16:41 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/518) 1:6 to QC_BAD because prior to dive start 08:16:41 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/518) 517 to QC_BAD because end of climb 08:16:41 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/518) 1:6 185:189 517 518 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:16:41 31 Jan 2017 UTC: INFO: QC.py(180): Changed (13/518) 1:6 185:189 517 518 to QC_BAD because changed corrected salin implies changed speed 08:16:41 31 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:16:41 31 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 68 interp_salinity data_points in_between 287 291 % suspect thermal-inertia points 290 291 08:16:41 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 27.96 cm/s 08:16:41 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.11 cm/s 08:16:41 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:16:41 31 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (78/518) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:16:41 31 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (78/518) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:16:41 31 Jan 2017 UTC: INFO: QC.py(180): Changed (13/518) 1:6 185:189 517 518 to QC_BAD because changed salinity implies changed optode oxygen 08:16:41 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:16:41 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 08:16:41 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 68: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.51% reduction 08:16:41 31 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.68 08:16:41 31 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:16:41 31 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:16:41 31 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:16:42 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 08:16:42 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 08:17:04 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 08:17:04 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 08:17:04 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 08:17:09 31 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:17:09 31 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:17:09 31 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:17:09 31 Jan 2017 UTC /home/sg626/p6260068.log /home/sg626/p6260068.eng /home/sg626/p6260068.asc /home/sg626/p6260068.pro /home/sg626/p6260068.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 08:17:09 31 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:17:09 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:17:09 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:17:09 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:17:09 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:17:09 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:17:09 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:17:09 31 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:17:09 31 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:17:09 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:17:09 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:17:09 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:17:09 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:17:09 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:17:09 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:17:09 31 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:17:09 31 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:17:09 31 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:17:09 31 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:17:09 31 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:17:09 31 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:17:09 31 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:17:09 31 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:17:09 31 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 08:17:09 31 Jan 2017 UTC 10:13:48 31 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 25262 10:13:48 31 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 10:16:15 31 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 25413 10:16:15 31 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:16:15 31 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:16:15 31 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:16:15 31 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:16:15 31 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170131001615 ] 10:16:15 31 Jan 2017 UTC: INFO: Base.py(1333): PID:25421 10:16:15 31 Jan 2017 UTC: INFO: Base.py(1375): Started processing 10:16:15 31 Jan 2017 UTC 10:16:15 31 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:16:16 31 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:16:16 31 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:16:16 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:16:16 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:69 calls_made:1 call_cycle:0 10:16:16 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:16:16 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:69 calls_made:1 call_cycle:0 10:16:16 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:16:16 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:69 calls_made:1 call_cycle:0 10:16:16 31 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:69 calls_made:1 call_cycle:0 2251.1420 -15754.6710 01/31/17 10:11:54 UTC) to sdrifter@soest.hawaii.edu 10:16:16 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:69 calls_made:1 call_cycle:0 10:16:16 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:16:16 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:69 calls_made:1 call_cycle:0 10:16:16 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:16:16 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:69 calls_made:1 call_cycle:0 10:16:16 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:16:16 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:69 calls_made:1 call_cycle:0 10:16:16 31 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:16:16 31 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:16:17 31 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:16:17 31 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:16:17 31 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:16:17 31 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:16:17 31 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:16:17 31 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:16:18 31 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0069lz 10:16:18 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0069lz.x00 10:16:18 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0069lz.x01 10:16:18 31 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0069lz.r in process_file_group 10:16:18 31 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260069.log 10:16:18 31 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:16:18 31 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0069dz 10:16:18 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0069dz.x00 10:16:18 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0069dz.x01 10:16:18 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0069dz.x02 10:16:18 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0069dz.x03 10:16:18 31 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0069dz.r in process_file_group 10:16:18 31 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [69] 10:16:18 31 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [69] 10:16:18 31 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260069) for profiles 10:16:18 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 10:16:18 31 Jan 2017 UTC: INFO: QC.py(365): Changed (1/483) 4 to QC_PROBABLY_BAD because raw temperature spikes 10:16:18 31 Jan 2017 UTC: INFO: QC.py(180): Changed (1/483) 4 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 10:16:18 31 Jan 2017 UTC: INFO: QC.py(365): Changed (1/483) 4 to QC_INTERPOLATED because temperature spikes 10:16:18 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/483) 189:193 to QC_BAD because slow apogee CT flow 10:16:18 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/483) 1:6 to QC_BAD because prior to dive start 10:16:18 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/483) 482 483 to QC_BAD because end of climb 10:16:18 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/483) 1:6 189:193 482 483 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:16:18 31 Jan 2017 UTC: INFO: QC.py(180): Changed (13/483) 1:6 189:193 482 483 to QC_BAD because changed corrected salin implies changed speed 10:16:19 31 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 10:16:19 31 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 69 interp_salinity data_points in_between 292 298 % suspect thermal-inertia points 295:298 10:16:19 31 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 69 interp_salinity data_points in_between 340 344 % suspect thermal-inertia points 343 344 10:16:19 31 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 69 interp_salinity data_points in_between 346 347 % suspect thermal-inertia points 346 347 10:16:19 31 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 69 interp_salinity data_points in_between 349 354 % suspect thermal-inertia points 349:352 10:16:19 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.23 cm/s 10:16:19 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.68 cm/s 10:16:19 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:16:19 31 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (76/483) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:16:19 31 Jan 2017 UTC: INFO: QC.py(180): Changed (1/483) 4 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 10:16:19 31 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (76/483) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 10:16:19 31 Jan 2017 UTC: INFO: QC.py(180): Changed (1/483) 4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 10:16:19 31 Jan 2017 UTC: INFO: QC.py(180): Changed (13/483) 1:6 189:193 482 483 to QC_BAD because changed salinity implies changed optode oxygen 10:16:19 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:16:19 31 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:16:19 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 10:16:19 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 69: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.69% reduction 10:16:19 31 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.69 10:16:19 31 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.69 10:16:19 31 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:16:19 31 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:16:19 31 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:16:19 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 10:16:19 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 10:16:42 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 102, max_depth_dive_num = 25 10:16:42 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 10:16:42 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 10:16:47 31 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:16:47 31 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:16:47 31 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 10:16:47 31 Jan 2017 UTC /home/sg626/p6260069.log /home/sg626/p6260069.eng /home/sg626/p6260069.asc /home/sg626/p6260069.pro /home/sg626/p6260069.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 10:16:47 31 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:16:47 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:16:47 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:16:47 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:16:47 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:16:47 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:16:47 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:16:47 31 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:16:47 31 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:16:47 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:16:47 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:16:47 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:16:47 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:16:47 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:16:47 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:16:47 31 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:16:47 31 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:16:47 31 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:16:47 31 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:16:47 31 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:16:47 31 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:16:47 31 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:16:47 31 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:16:47 31 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 10:16:47 31 Jan 2017 UTC 13:20:35 31 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 31246 13:20:35 31 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:22:56 31 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 31357 13:22:56 31 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:22:56 31 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:22:56 31 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:22:56 31 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:22:56 31 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170131032256 ] 13:22:56 31 Jan 2017 UTC: INFO: Base.py(1333): PID:31365 13:22:57 31 Jan 2017 UTC: INFO: Base.py(1375): Started processing 13:22:57 31 Jan 2017 UTC 13:22:57 31 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:22:57 31 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:22:57 31 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:22:57 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:22:57 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:70 calls_made:1 call_cycle:0 13:22:57 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:22:57 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:70 calls_made:1 call_cycle:0 13:22:57 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:22:57 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:70 calls_made:1 call_cycle:0 13:22:57 31 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:70 calls_made:1 call_cycle:0 2251.2190 -15755.6190 01/31/17 13:18:37 UTC) to sdrifter@soest.hawaii.edu 13:23:02 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:70 calls_made:1 call_cycle:0 13:23:02 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:23:02 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:70 calls_made:1 call_cycle:0 13:23:02 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:23:02 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:70 calls_made:1 call_cycle:0 13:23:02 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:23:02 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:70 calls_made:1 call_cycle:0 13:23:02 31 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:23:02 31 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:23:03 31 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:23:04 31 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:23:04 31 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:23:04 31 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:23:04 31 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:23:04 31 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:23:04 31 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0070lz 13:23:04 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0070lz.x00 13:23:04 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0070lz.x01 13:23:04 31 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0070lz.r in process_file_group 13:23:04 31 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260070.log 13:23:04 31 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:23:04 31 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0070dz 13:23:04 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0070dz.x00 13:23:04 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0070dz.x01 13:23:04 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0070dz.x02 13:23:04 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0070dz.x03 13:23:04 31 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0070dz.r in process_file_group 13:23:04 31 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [70] 13:23:04 31 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [70] 13:23:04 31 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260070) for profiles 13:23:04 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:23:04 31 Jan 2017 UTC: INFO: QC.py(365): Changed (4/573) 218 220 221 231 to QC_PROBABLY_BAD because raw temperature spikes 13:23:04 31 Jan 2017 UTC: INFO: QC.py(408): Changed (3/573) 218 220 221 to QC_PROBABLY_BAD because raw conductivity spikes 13:23:04 31 Jan 2017 UTC: INFO: QC.py(180): Changed (4/573) 218 220 221 231 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:23:04 31 Jan 2017 UTC: INFO: QC.py(365): Changed (4/573) 218 220 221 231 to QC_INTERPOLATED because temperature spikes 13:23:04 31 Jan 2017 UTC: INFO: QC.py(408): Changed (3/573) 218 220 221 to QC_INTERPOLATED because conductivity spikes 13:23:04 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/573) 229:234 to QC_BAD because slow apogee CT flow 13:23:04 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/573) 1:6 to QC_BAD because prior to dive start 13:23:04 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/573) 572 573 to QC_BAD because end of climb 13:23:04 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/573) 1:6 229:234 572 573 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:23:04 31 Jan 2017 UTC: INFO: QC.py(180): Changed (14/573) 1:6 229:234 572 573 to QC_BAD because changed corrected salin implies changed speed 13:23:05 31 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:23:05 31 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 70 interp_salinity data_points in_between 412 415 % suspect thermal-inertia points 412:414 13:23:05 31 Jan 2017 UTC: INFO: QC.py(180): Changed (3/573) 218 220 221 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 13:23:05 31 Jan 2017 UTC: INFO: QC.py(180): Changed (3/573) 218 220 221 to QC_INTERPOLATED because changed corrected temp implies changed speed 13:23:05 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.24 cm/s 13:23:05 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.35 cm/s 13:23:05 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:23:05 31 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/573) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:23:05 31 Jan 2017 UTC: INFO: QC.py(180): Changed (2/573) 221 231 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:23:05 31 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/573) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:23:05 31 Jan 2017 UTC: INFO: QC.py(180): Changed (2/573) 221 231 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:23:05 31 Jan 2017 UTC: INFO: QC.py(180): Changed (14/573) 1:6 229:234 572 573 to QC_BAD because changed salinity implies changed optode oxygen 13:23:05 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:23:05 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:23:05 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 70: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.44% reduction 13:23:05 31 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.70 13:23:05 31 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:23:05 31 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:23:05 31 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:23:05 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:23:05 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:23:29 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 141, max_depth_dive_num = 70 13:23:29 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:23:29 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:23:34 31 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:23:34 31 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:23:34 31 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:23:34 31 Jan 2017 UTC /home/sg626/p6260070.log /home/sg626/p6260070.eng /home/sg626/p6260070.asc /home/sg626/p6260070.pro /home/sg626/p6260070.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:23:34 31 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:23:34 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:23:34 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:23:34 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:23:34 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:23:34 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:23:34 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:23:34 31 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:23:34 31 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:23:34 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:23:34 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:23:34 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:23:34 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:23:34 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:23:34 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:23:34 31 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:23:34 31 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:23:34 31 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:23:34 31 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:23:34 31 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:23:34 31 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:23:34 31 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:23:34 31 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:23:34 31 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 13:23:34 31 Jan 2017 UTC 16:21:48 31 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 4487 16:21:48 31 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:24:07 31 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 4542 16:24:07 31 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:24:07 31 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:24:07 31 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:24:07 31 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:24:07 31 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170131062407 ] 16:24:07 31 Jan 2017 UTC: INFO: Base.py(1333): PID:4550 16:24:07 31 Jan 2017 UTC: INFO: Base.py(1375): Started processing 16:24:07 31 Jan 2017 UTC 16:24:07 31 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:24:08 31 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:24:08 31 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:24:08 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:24:08 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:71 calls_made:1 call_cycle:0 16:24:08 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:24:08 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:71 calls_made:1 call_cycle:0 16:24:08 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:24:08 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:71 calls_made:1 call_cycle:0 16:24:08 31 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:71 calls_made:1 call_cycle:0 2251.1320 -15756.8180 01/31/17 16:19:54 UTC) to sdrifter@soest.hawaii.edu 16:24:08 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:71 calls_made:1 call_cycle:0 16:24:08 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:24:08 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:71 calls_made:1 call_cycle:0 16:24:08 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:24:08 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:71 calls_made:1 call_cycle:0 16:24:08 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:24:08 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:71 calls_made:1 call_cycle:0 16:24:08 31 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:24:08 31 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:24:09 31 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:24:10 31 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:24:10 31 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:24:10 31 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:24:10 31 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:24:10 31 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:24:10 31 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0071lz 16:24:10 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0071lz.x00 16:24:10 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0071lz.x01 16:24:10 31 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0071lz.r in process_file_group 16:24:10 31 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260071.log 16:24:10 31 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:24:10 31 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0071dz 16:24:10 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0071dz.x00 16:24:10 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0071dz.x01 16:24:10 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0071dz.x02 16:24:10 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0071dz.x03 16:24:10 31 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0071dz.r in process_file_group 16:24:10 31 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [71] 16:24:10 31 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [71] 16:24:10 31 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260071) for profiles 16:24:10 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:24:10 31 Jan 2017 UTC: INFO: QC.py(365): Changed (1/543) 243 to QC_PROBABLY_BAD because raw temperature spikes 16:24:10 31 Jan 2017 UTC: INFO: QC.py(180): Changed (1/543) 243 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:24:10 31 Jan 2017 UTC: INFO: QC.py(365): Changed (1/543) 243 to QC_INTERPOLATED because temperature spikes 16:24:10 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/543) 226:231 to QC_BAD because slow apogee CT flow 16:24:10 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/543) 1:6 to QC_BAD because prior to dive start 16:24:10 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/543) 1:6 226:231 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:24:10 31 Jan 2017 UTC: INFO: QC.py(180): Changed (12/543) 1:6 226:231 to QC_BAD because changed corrected salin implies changed speed 16:24:10 31 Jan 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 542 16:24:11 31 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:24:11 31 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 71 interp_salinity data_points in_between 263 321 % suspect thermal-inertia points 16:24:11 31 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 71 interp_salinity data_points in_between 328 335 % suspect thermal-inertia points 16:24:11 31 Jan 2017 UTC: INFO: QC.py(180): Changed (1/543) 243 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 16:24:11 31 Jan 2017 UTC: INFO: QC.py(180): Changed (1/543) 243 to QC_INTERPOLATED because changed corrected temp implies changed speed 16:24:11 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.17 cm/s 16:24:11 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.44 cm/s 16:24:11 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:24:11 31 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (156/543) 123:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:24:11 31 Jan 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/543) 542 to QC_BAD because slow flow in SBE43 16:24:11 31 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (156/543) 123:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:24:11 31 Jan 2017 UTC: INFO: QC.py(180): Changed (12/543) 1:6 226:231 to QC_BAD because changed salinity implies changed optode oxygen 16:24:11 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:24:11 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:24:11 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 71: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.21% reduction 16:24:11 31 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.71 16:24:11 31 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:24:11 31 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:24:11 31 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:24:11 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:24:11 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:24:35 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 141, max_depth_dive_num = 70 16:24:35 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:24:35 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:24:40 31 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:24:40 31 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:24:40 31 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:24:40 31 Jan 2017 UTC /home/sg626/p6260071.log /home/sg626/p6260071.eng /home/sg626/p6260071.asc /home/sg626/p6260071.pro /home/sg626/p6260071.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:24:40 31 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:24:40 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:24:40 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:24:40 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:24:40 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:24:40 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:24:40 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:24:40 31 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:24:40 31 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:24:40 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:24:40 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:24:40 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:24:40 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:24:40 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:24:40 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:24:40 31 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:24:40 31 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:24:40 31 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:24:40 31 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:24:40 31 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:24:40 31 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:24:40 31 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:24:40 31 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:24:40 31 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 16:24:40 31 Jan 2017 UTC 19:24:52 31 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 10274 19:24:52 31 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 19:27:22 31 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 10386 19:27:23 31 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:27:23 31 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:27:23 31 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:27:23 31 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:27:23 31 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170131092722 ] 19:27:23 31 Jan 2017 UTC: INFO: Base.py(1333): PID:10394 19:27:23 31 Jan 2017 UTC: INFO: Base.py(1375): Started processing 19:27:23 31 Jan 2017 UTC 19:27:23 31 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:27:23 31 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:27:23 31 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:27:23 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:27:23 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:72 calls_made:1 call_cycle:0 19:27:23 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:27:23 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:72 calls_made:1 call_cycle:0 19:27:23 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:27:23 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:72 calls_made:1 call_cycle:0 19:27:23 31 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:72 calls_made:1 call_cycle:0 2251.5870 -15758.0870 01/31/17 19:23:01 UTC) to sdrifter@soest.hawaii.edu 19:27:23 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:72 calls_made:1 call_cycle:0 19:27:23 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:27:23 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:72 calls_made:1 call_cycle:0 19:27:23 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:27:23 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:72 calls_made:1 call_cycle:0 19:27:23 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:27:23 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:72 calls_made:1 call_cycle:0 19:27:23 31 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:27:23 31 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:27:25 31 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:27:25 31 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:27:25 31 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:27:25 31 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:27:25 31 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:27:25 31 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:27:25 31 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0072lz 19:27:25 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0072lz.x00 19:27:25 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0072lz.x01 19:27:25 31 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0072lz.r in process_file_group 19:27:25 31 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260072.log 19:27:25 31 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:27:25 31 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0072dz 19:27:25 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0072dz.x00 19:27:25 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0072dz.x01 19:27:25 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0072dz.x02 19:27:25 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0072dz.x03 19:27:25 31 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0072dz.r in process_file_group 19:27:25 31 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [72] 19:27:25 31 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [72] 19:27:25 31 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260072) for profiles 19:27:25 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 19:27:25 31 Jan 2017 UTC: INFO: QC.py(365): Changed (4/563) 223 228 241 562 to QC_PROBABLY_BAD because raw temperature spikes 19:27:25 31 Jan 2017 UTC: INFO: QC.py(408): Changed (3/563) 223 241 562 to QC_PROBABLY_BAD because raw conductivity spikes 19:27:25 31 Jan 2017 UTC: INFO: QC.py(180): Changed (4/563) 223 228 241 562 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:27:25 31 Jan 2017 UTC: INFO: QC.py(365): Changed (4/563) 223 228 241 562 to QC_INTERPOLATED because temperature spikes 19:27:25 31 Jan 2017 UTC: INFO: QC.py(408): Changed (3/563) 223 241 562 to QC_INTERPOLATED because conductivity spikes 19:27:25 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/563) 224:229 to QC_BAD because slow apogee CT flow 19:27:25 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/563) 1:6 to QC_BAD because prior to dive start 19:27:25 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/563) 562 563 to QC_BAD because end of climb 19:27:25 31 Jan 2017 UTC: INFO: QC.py(488): Changed (1/563) 223 to QC_PROBABLY_BAD because bad interpolation anchors 19:27:25 31 Jan 2017 UTC: INFO: QC.py(489): SUGGESTION: 72 bad_conductivity data_points in_between 221 223 % bad interpolation anchors 19:27:25 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/563) 1:6 224:229 562 563 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:27:25 31 Jan 2017 UTC: INFO: QC.py(180): Changed (14/563) 1:6 224:229 562 563 to QC_BAD because changed corrected salin implies changed speed 19:27:26 31 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:27:26 31 Jan 2017 UTC: INFO: QC.py(180): Changed (2/563) 223 241 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 19:27:26 31 Jan 2017 UTC: INFO: QC.py(180): Changed (1/563) 223 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 19:27:26 31 Jan 2017 UTC: INFO: QC.py(180): Changed (2/563) 223 241 to QC_INTERPOLATED because changed corrected temp implies changed speed 19:27:26 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.55 cm/s 19:27:26 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.38 cm/s 19:27:26 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:27:26 31 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (158/563) 119 120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:27:26 31 Jan 2017 UTC: INFO: QC.py(180): Changed (2/563) 241 562 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 19:27:26 31 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (158/563) 119 120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 19:27:26 31 Jan 2017 UTC: INFO: QC.py(180): Changed (2/563) 241 562 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 19:27:26 31 Jan 2017 UTC: INFO: QC.py(180): Changed (14/563) 1:6 224:229 562 563 to QC_BAD because changed salinity implies changed optode oxygen 19:27:26 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:27:26 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 19:27:26 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 72: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.49% reduction 19:27:27 31 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.72 19:27:27 31 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.72 19:27:27 31 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:27:27 31 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:27:27 31 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:27:27 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 19:27:27 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 19:27:51 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 19:27:51 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 19:27:51 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 19:27:56 31 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:27:56 31 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:27:56 31 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:27:56 31 Jan 2017 UTC /home/sg626/p6260072.log /home/sg626/p6260072.eng /home/sg626/p6260072.asc /home/sg626/p6260072.pro /home/sg626/p6260072.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 19:27:56 31 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:27:56 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:27:56 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:27:56 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:27:56 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:27:56 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:27:56 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:27:56 31 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:27:56 31 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:27:56 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:27:56 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:27:56 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:27:56 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:27:56 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:27:56 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:27:56 31 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:27:56 31 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:27:56 31 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:27:56 31 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:27:56 31 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:27:56 31 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:27:56 31 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:27:56 31 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:27:56 31 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 19:27:56 31 Jan 2017 UTC 22:30:00 31 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 15686 22:30:00 31 Jan 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 22:32:22 31 Jan 2017 UTC: INFO: BaseLog.py(77): Process id = 15889 22:32:22 31 Jan 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:32:22 31 Jan 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:32:22 31 Jan 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:32:22 31 Jan 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:32:22 31 Jan 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170131123221 ] 22:32:22 31 Jan 2017 UTC: INFO: Base.py(1333): PID:15897 22:32:22 31 Jan 2017 UTC: INFO: Base.py(1375): Started processing 22:32:22 31 Jan 2017 UTC 22:32:22 31 Jan 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:32:22 31 Jan 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:32:22 31 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:32:22 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:32:22 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:73 calls_made:1 call_cycle:0 22:32:22 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:32:22 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:73 calls_made:1 call_cycle:0 22:32:22 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:32:22 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:73 calls_made:1 call_cycle:0 22:32:22 31 Jan 2017 UTC: INFO: Base.py(975): Sending GPS (dive:73 calls_made:1 call_cycle:0 2252.2610 -15759.1300 01/31/17 22:28:07 UTC) to sdrifter@soest.hawaii.edu 22:32:22 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:73 calls_made:1 call_cycle:0 22:32:22 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:32:22 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:73 calls_made:1 call_cycle:0 22:32:22 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:32:22 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:73 calls_made:1 call_cycle:0 22:32:22 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:32:22 31 Jan 2017 UTC: INFO: CommLog.py(51): prefix:dive:73 calls_made:1 call_cycle:0 22:32:22 31 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:32:22 31 Jan 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:32:24 31 Jan 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:32:24 31 Jan 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:32:24 31 Jan 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:32:24 31 Jan 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:32:24 31 Jan 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:32:24 31 Jan 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:32:24 31 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0073lz 22:32:24 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0073lz.x00 22:32:24 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0073lz.x01 22:32:24 31 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0073lz.r in process_file_group 22:32:24 31 Jan 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260073.log 22:32:24 31 Jan 2017 UTC: INFO: Base.py(265): fragment_size = 4096 22:32:24 31 Jan 2017 UTC: INFO: Base.py(368): Processing ./sg0073dz 22:32:24 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0073dz.x00 22:32:24 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0073dz.x01 22:32:24 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0073dz.x02 22:32:24 31 Jan 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0073dz.x03 22:32:24 31 Jan 2017 UTC: INFO: Base.py(472): Processing ./sg0073dz.r in process_file_group 22:32:24 31 Jan 2017 UTC: INFO: Base.py(1622): Processed dive(s) [73] 22:32:24 31 Jan 2017 UTC: INFO: Base.py(1656): Dives to process = [73] 22:32:24 31 Jan 2017 UTC: INFO: Base.py(1719): Processing (./p6260073) for profiles 22:32:24 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 22:32:24 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/566) 566 to QC_BAD because CT out of water 22:32:24 31 Jan 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.008m) 22:32:24 31 Jan 2017 UTC: INFO: QC.py(365): Changed (6/566) 217 225 230 240 243 248 to QC_PROBABLY_BAD because raw temperature spikes 22:32:24 31 Jan 2017 UTC: INFO: QC.py(377): Changed (1/566) 566 to QC_BAD because raw salinity below bound 22:32:24 31 Jan 2017 UTC: INFO: QC.py(408): Changed (6/566) 217 225 230 243 248 252 to QC_PROBABLY_BAD because raw conductivity spikes 22:32:24 31 Jan 2017 UTC: INFO: QC.py(180): Changed (6/566) 217 225 230 240 243 248 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 22:32:25 31 Jan 2017 UTC: INFO: QC.py(180): Changed (1/566) 252 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 22:32:25 31 Jan 2017 UTC: INFO: QC.py(365): Changed (6/566) 217 225 230 240 243 248 to QC_INTERPOLATED because temperature spikes 22:32:25 31 Jan 2017 UTC: INFO: QC.py(377): Changed (1/566) 566 to QC_BAD because salinity below bound 22:32:25 31 Jan 2017 UTC: INFO: QC.py(408): Changed (6/566) 217 225 230 243 248 252 to QC_INTERPOLATED because conductivity spikes 22:32:25 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/566) 234:239 to QC_BAD because slow apogee CT flow 22:32:25 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/566) 1:6 to QC_BAD because prior to dive start 22:32:25 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/566) 1:6 234:239 566 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:32:25 31 Jan 2017 UTC: INFO: QC.py(180): Changed (13/566) 1:6 234:239 566 to QC_BAD because changed corrected salin implies changed speed 22:32:25 31 Jan 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:32:25 31 Jan 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 73 interp_salinity data_points in_between 351 354 % suspect thermal-inertia points 351:353 22:32:25 31 Jan 2017 UTC: INFO: QC.py(180): Changed (6/566) 217 225 230 240 243 248 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 22:32:25 31 Jan 2017 UTC: INFO: QC.py(180): Changed (1/566) 252 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 22:32:25 31 Jan 2017 UTC: INFO: QC.py(180): Changed (6/566) 217 225 230 240 243 248 to QC_INTERPOLATED because changed corrected temp implies changed speed 22:32:25 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.13 cm/s 22:32:25 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.63 cm/s 22:32:25 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:32:25 31 Jan 2017 UTC: INFO: sbe43_ext.py(236): Changed (159/566) 128:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:32:25 31 Jan 2017 UTC: INFO: aa4330_ext.py(316): Changed (159/566) 128:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 22:32:25 31 Jan 2017 UTC: INFO: QC.py(180): Changed (13/566) 1:6 234:239 566 to QC_BAD because changed salinity implies changed optode oxygen 22:32:25 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 22:32:25 31 Jan 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 22:32:25 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 73: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.30% reduction 22:32:26 31 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.73 22:32:26 31 Jan 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.73 22:32:26 31 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:32:26 31 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:32:26 31 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:32:26 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 22:32:26 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 22:32:50 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 22:32:50 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 22:32:50 31 Jan 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 22:32:56 31 Jan 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:32:56 31 Jan 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:32:56 31 Jan 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:32:56 31 Jan 2017 UTC /home/sg626/p6260073.log /home/sg626/p6260073.eng /home/sg626/p6260073.asc /home/sg626/p6260073.pro /home/sg626/p6260073.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 22:32:56 31 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:32:56 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:32:56 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:32:56 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:32:56 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:32:56 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:32:56 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:32:56 31 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:32:56 31 Jan 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:32:56 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:32:56 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:32:56 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:32:56 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:32:56 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:32:56 31 Jan 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:32:56 31 Jan 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:32:56 31 Jan 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:32:56 31 Jan 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:32:56 31 Jan 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:32:56 31 Jan 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:32:56 31 Jan 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:32:56 31 Jan 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:32:56 31 Jan 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:32:56 31 Jan 2017 UTC: INFO: Base.py(2265): Finished processing 22:32:56 31 Jan 2017 UTC 01:31:58 01 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 21314 01:31:58 01 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 01:34:39 01 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 21435 01:34:39 01 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:34:39 01 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:34:39 01 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:34:39 01 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:34:39 01 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170131153439 ] 01:34:39 01 Feb 2017 UTC: INFO: Base.py(1333): PID:21443 01:34:39 01 Feb 2017 UTC: INFO: Base.py(1375): Started processing 01:34:39 01 Feb 2017 UTC 01:34:39 01 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:34:40 01 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:34:40 01 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:34:40 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:34:40 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:74 calls_made:1 call_cycle:0 01:34:40 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:34:40 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:74 calls_made:1 call_cycle:0 01:34:40 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:34:40 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:74 calls_made:1 call_cycle:0 01:34:40 01 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:74 calls_made:1 call_cycle:0 2252.1550 -15759.9620 02/01/17 01:30:00 UTC) to sdrifter@soest.hawaii.edu 01:34:40 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:74 calls_made:1 call_cycle:0 01:34:40 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:34:40 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:74 calls_made:1 call_cycle:0 01:34:40 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:34:40 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:74 calls_made:1 call_cycle:0 01:34:40 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:34:40 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:74 calls_made:1 call_cycle:0 01:34:40 01 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:34:40 01 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:34:41 01 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:34:42 01 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:34:42 01 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:34:42 01 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:34:42 01 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:34:42 01 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:34:42 01 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0074lz 01:34:42 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0074lz.x00 01:34:42 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0074lz.x01 01:34:42 01 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0074lz.r in process_file_group 01:34:42 01 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260074.log 01:34:42 01 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:34:42 01 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0074dz 01:34:42 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0074dz.x00 01:34:42 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0074dz.x01 01:34:42 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0074dz.x02 01:34:42 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0074dz.x03 01:34:42 01 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0074dz.r in process_file_group 01:34:42 01 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [74] 01:34:42 01 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [74] 01:34:42 01 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260074) for profiles 01:34:42 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:34:42 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/561) 561 to QC_BAD because CT out of water 01:34:42 01 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.017m) 01:34:42 01 Feb 2017 UTC: INFO: QC.py(365): Changed (2/561) 2 243 to QC_PROBABLY_BAD because raw temperature spikes 01:34:42 01 Feb 2017 UTC: INFO: QC.py(408): Changed (2/561) 196 243 to QC_PROBABLY_BAD because raw conductivity spikes 01:34:42 01 Feb 2017 UTC: INFO: QC.py(180): Changed (2/561) 2 243 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:34:42 01 Feb 2017 UTC: INFO: QC.py(180): Changed (1/561) 196 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 01:34:42 01 Feb 2017 UTC: INFO: QC.py(180): Changed (1/561) 561 to QC_BAD because changed raw cond implies changed raw salinity 01:34:42 01 Feb 2017 UTC: INFO: QC.py(365): Changed (2/561) 2 243 to QC_INTERPOLATED because temperature spikes 01:34:42 01 Feb 2017 UTC: INFO: QC.py(408): Changed (2/561) 196 243 to QC_INTERPOLATED because conductivity spikes 01:34:42 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/561) 222:227 to QC_BAD because slow apogee CT flow 01:34:42 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/561) 1:6 to QC_BAD because prior to dive start 01:34:42 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/561) 1:6 222:227 561 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:34:42 01 Feb 2017 UTC: INFO: QC.py(180): Changed (13/561) 1:6 222:227 561 to QC_BAD because changed corrected salin implies changed speed 01:34:43 01 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:34:43 01 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 74 interp_salinity data_points in_between 350 358 % suspect thermal-inertia points 350 01:34:43 01 Feb 2017 UTC: INFO: QC.py(180): Changed (1/561) 243 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 01:34:43 01 Feb 2017 UTC: INFO: QC.py(180): Changed (1/561) 196 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 01:34:43 01 Feb 2017 UTC: INFO: QC.py(180): Changed (1/561) 243 to QC_INTERPOLATED because changed corrected temp implies changed speed 01:34:43 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.92 cm/s 01:34:43 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.60 cm/s 01:34:43 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:34:43 01 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (155/561) 123:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:34:43 01 Feb 2017 UTC: INFO: QC.py(180): Changed (1/561) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 01:34:43 01 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (155/561) 123:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 01:34:43 01 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/561) 560 561 to QC_BAD because bad aa4330 oyxgen 01:34:43 01 Feb 2017 UTC: INFO: QC.py(180): Changed (1/561) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 01:34:43 01 Feb 2017 UTC: INFO: QC.py(180): Changed (12/561) 1:6 222:227 to QC_BAD because changed salinity implies changed optode oxygen 01:34:43 01 Feb 2017 UTC: INFO: QC.py(180): Changed (1/561) 196 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 01:34:43 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:34:43 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:34:44 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 74: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.32% reduction 01:34:44 01 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.74 01:34:44 01 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.74 01:34:44 01 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:34:44 01 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:34:44 01 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:34:44 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:34:44 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 01:35:09 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 01:35:09 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 01:35:09 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 01:35:15 01 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:35:15 01 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:35:15 01 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:35:15 01 Feb 2017 UTC /home/sg626/p6260074.log /home/sg626/p6260074.eng /home/sg626/p6260074.asc /home/sg626/p6260074.pro /home/sg626/p6260074.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 01:35:15 01 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:35:15 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:35:15 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:35:15 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:35:15 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:35:15 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:35:15 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:35:15 01 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:35:15 01 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:35:15 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:35:15 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:35:15 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:35:15 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:35:15 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:35:15 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:35:15 01 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:35:15 01 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:35:15 01 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:35:15 01 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:35:15 01 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:35:15 01 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:35:15 01 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:35:15 01 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:35:15 01 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 01:35:15 01 Feb 2017 UTC 04:34:05 01 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 26771 04:34:05 01 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 04:36:30 01 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 26884 04:36:30 01 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:36:30 01 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:36:30 01 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:36:30 01 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:36:30 01 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170131183629 ] 04:36:30 01 Feb 2017 UTC: INFO: Base.py(1333): PID:26892 04:36:30 01 Feb 2017 UTC: INFO: Base.py(1375): Started processing 04:36:30 01 Feb 2017 UTC 04:36:30 01 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:36:30 01 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:36:30 01 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:36:30 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:36:30 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:75 calls_made:1 call_cycle:0 04:36:30 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:36:30 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:75 calls_made:1 call_cycle:0 04:36:30 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:36:30 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:75 calls_made:1 call_cycle:0 04:36:30 01 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:75 calls_made:1 call_cycle:0 2252.0790 -15800.9280 02/01/17 04:32:14 UTC) to sdrifter@soest.hawaii.edu 04:36:30 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:75 calls_made:1 call_cycle:0 04:36:30 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:36:30 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:75 calls_made:1 call_cycle:0 04:36:30 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:36:30 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:75 calls_made:1 call_cycle:0 04:36:30 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:36:30 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:75 calls_made:1 call_cycle:0 04:36:30 01 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:36:30 01 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:36:32 01 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:36:32 01 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:36:32 01 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:36:32 01 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:36:32 01 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:36:32 01 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:36:32 01 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0075lz 04:36:32 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0075lz.x00 04:36:32 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0075lz.x01 04:36:32 01 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0075lz.r in process_file_group 04:36:32 01 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260075.log 04:36:32 01 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:36:32 01 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0075dz 04:36:32 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0075dz.x00 04:36:32 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0075dz.x01 04:36:32 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0075dz.x02 04:36:32 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0075dz.x03 04:36:32 01 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0075dz.r in process_file_group 04:36:33 01 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [75] 04:36:33 01 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [75] 04:36:33 01 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260075) for profiles 04:36:33 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 04:36:33 01 Feb 2017 UTC: INFO: QC.py(365): Changed (5/570) 2 70 188 189 219 to QC_PROBABLY_BAD because raw temperature spikes 04:36:33 01 Feb 2017 UTC: INFO: QC.py(408): Changed (1/570) 189 to QC_PROBABLY_BAD because raw conductivity spikes 04:36:33 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/570) 570 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 04:36:33 01 Feb 2017 UTC: INFO: QC.py(180): Changed (5/570) 2 70 188 189 219 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:36:33 01 Feb 2017 UTC: INFO: QC.py(180): Changed (1/570) 570 to QC_BAD because changed raw cond implies changed raw salinity 04:36:33 01 Feb 2017 UTC: INFO: QC.py(365): Changed (5/570) 2 70 188 189 219 to QC_INTERPOLATED because temperature spikes 04:36:33 01 Feb 2017 UTC: INFO: QC.py(408): Changed (1/570) 189 to QC_INTERPOLATED because conductivity spikes 04:36:33 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/570) 570 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 04:36:33 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/570) 217:222 to QC_BAD because slow apogee CT flow 04:36:33 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/570) 1:6 to QC_BAD because prior to dive start 04:36:33 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/570) 569 to QC_BAD because end of climb 04:36:33 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/570) 1:6 217:222 569 570 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:36:33 01 Feb 2017 UTC: INFO: QC.py(180): Changed (14/570) 1:6 217:222 569 570 to QC_BAD because changed corrected salin implies changed speed 04:36:33 01 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:36:33 01 Feb 2017 UTC: INFO: QC.py(180): Changed (3/570) 70 188 189 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 04:36:33 01 Feb 2017 UTC: INFO: QC.py(180): Changed (3/570) 70 188 189 to QC_INTERPOLATED because changed corrected temp implies changed speed 04:36:33 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.88 cm/s 04:36:33 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.36 cm/s 04:36:33 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:36:33 01 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (153/570) 118:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:36:33 01 Feb 2017 UTC: INFO: QC.py(180): Changed (2/570) 2 70 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:36:33 01 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (153/570) 118:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 04:36:33 01 Feb 2017 UTC: INFO: QC.py(180): Changed (2/570) 2 70 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:36:33 01 Feb 2017 UTC: INFO: QC.py(180): Changed (14/570) 1:6 217:222 569 570 to QC_BAD because changed salinity implies changed optode oxygen 04:36:33 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:36:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 04:36:34 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 75: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.46% reduction 04:36:34 01 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.75 04:36:34 01 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.75 04:36:34 01 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:36:34 01 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:36:34 01 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:36:34 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 04:36:34 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 04:37:00 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 04:37:00 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 04:37:00 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 04:37:05 01 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:37:05 01 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:37:05 01 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:37:05 01 Feb 2017 UTC /home/sg626/p6260075.log /home/sg626/p6260075.eng /home/sg626/p6260075.asc /home/sg626/p6260075.pro /home/sg626/p6260075.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 04:37:05 01 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:37:05 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:37:05 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:37:05 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:37:05 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:37:05 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:37:05 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:37:05 01 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:37:05 01 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:37:05 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:37:05 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:37:05 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:37:05 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:37:05 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:37:05 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:37:05 01 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:37:05 01 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:37:05 01 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:37:05 01 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:37:05 01 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:37:05 01 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:37:05 01 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:37:05 01 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:37:05 01 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 04:37:05 01 Feb 2017 UTC 07:29:37 01 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 1866 07:29:37 01 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 07:31:57 01 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 2171 07:31:57 01 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:31:57 01 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:31:57 01 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:31:57 01 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:31:57 01 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170131213156 ] 07:31:57 01 Feb 2017 UTC: INFO: Base.py(1333): PID:2179 07:31:57 01 Feb 2017 UTC: INFO: Base.py(1375): Started processing 07:31:57 01 Feb 2017 UTC 07:31:57 01 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:31:57 01 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:31:57 01 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:31:57 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:31:57 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:76 calls_made:2 call_cycle:0 07:31:57 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:31:57 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:76 calls_made:2 call_cycle:0 07:31:57 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:31:57 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:76 calls_made:2 call_cycle:0 07:31:57 01 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:76 calls_made:2 call_cycle:0 2252.0600 -15802.0350 02/01/17 07:24:58 UTC) to sdrifter@soest.hawaii.edu 07:31:57 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:76 calls_made:2 call_cycle:0 07:31:57 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:31:57 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:76 calls_made:2 call_cycle:0 07:31:57 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:31:57 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:76 calls_made:2 call_cycle:0 07:31:57 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:31:57 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:76 calls_made:2 call_cycle:0 07:31:57 01 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:31:57 01 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:31:59 01 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:31:59 01 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:31:59 01 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:31:59 01 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:31:59 01 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:31:59 01 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:31:59 01 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0076lz 07:31:59 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0076lz.x00 07:31:59 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0076lz.x01 07:31:59 01 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0076lz.r in process_file_group 07:31:59 01 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260076.log 07:31:59 01 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:31:59 01 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0076dz 07:31:59 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0076dz.x00 07:31:59 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0076dz.x01 07:31:59 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0076dz.x02 07:31:59 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0076dz.x03 07:31:59 01 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0076dz.r in process_file_group 07:32:00 01 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [76] 07:32:00 01 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [76] 07:32:00 01 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260076) for profiles 07:32:00 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 07:32:00 01 Feb 2017 UTC: INFO: QC.py(365): Changed (3/494) 2 213 236 to QC_PROBABLY_BAD because raw temperature spikes 07:32:00 01 Feb 2017 UTC: INFO: QC.py(408): Changed (1/494) 236 to QC_PROBABLY_BAD because raw conductivity spikes 07:32:00 01 Feb 2017 UTC: INFO: QC.py(180): Changed (3/494) 2 213 236 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:32:00 01 Feb 2017 UTC: INFO: QC.py(365): Changed (3/494) 2 213 236 to QC_INTERPOLATED because temperature spikes 07:32:00 01 Feb 2017 UTC: INFO: QC.py(408): Changed (1/494) 236 to QC_INTERPOLATED because conductivity spikes 07:32:00 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/494) 210:215 to QC_BAD because slow apogee CT flow 07:32:00 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/494) 1:6 to QC_BAD because prior to dive start 07:32:00 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/494) 493 494 to QC_BAD because end of climb 07:32:00 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/494) 1:6 210:215 493 494 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:32:00 01 Feb 2017 UTC: INFO: QC.py(180): Changed (14/494) 1:6 210:215 493 494 to QC_BAD because changed corrected salin implies changed speed 07:32:00 01 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:32:00 01 Feb 2017 UTC: INFO: QC.py(180): Changed (1/494) 236 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 07:32:00 01 Feb 2017 UTC: INFO: QC.py(180): Changed (1/494) 236 to QC_INTERPOLATED because changed corrected temp implies changed speed 07:32:00 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 35.72 cm/s 07:32:00 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.70 cm/s 07:32:00 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:32:00 01 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (152/494) 114 115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:32:00 01 Feb 2017 UTC: INFO: QC.py(180): Changed (2/494) 2 236 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:32:00 01 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (152/494) 114 115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 07:32:00 01 Feb 2017 UTC: INFO: QC.py(180): Changed (2/494) 2 236 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:32:00 01 Feb 2017 UTC: INFO: QC.py(180): Changed (14/494) 1:6 210:215 493 494 to QC_BAD because changed salinity implies changed optode oxygen 07:32:00 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:32:00 01 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:32:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 07:32:01 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 76: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.83% reduction 07:32:01 01 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.76 07:32:01 01 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.76 07:32:01 01 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:32:01 01 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:32:01 01 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:32:01 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 07:32:01 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:32:27 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 07:32:27 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:32:27 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:32:33 01 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:32:33 01 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:32:33 01 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:32:33 01 Feb 2017 UTC /home/sg626/p6260076.log /home/sg626/p6260076.eng /home/sg626/p6260076.asc /home/sg626/p6260076.pro /home/sg626/p6260076.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:32:33 01 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:32:33 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:32:33 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:32:33 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:32:33 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:32:33 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:32:33 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:32:33 01 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:32:33 01 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:32:33 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:32:33 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:32:33 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:32:33 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:32:33 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:32:33 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:32:33 01 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:32:33 01 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:32:33 01 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:32:33 01 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:32:33 01 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:32:33 01 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:32:33 01 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:32:33 01 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:32:33 01 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 07:32:33 01 Feb 2017 UTC 10:30:27 01 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 8701 10:30:27 01 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 10:32:56 01 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 8817 10:32:56 01 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:32:56 01 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:32:56 01 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:32:56 01 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:32:56 01 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170201003255 ] 10:32:56 01 Feb 2017 UTC: INFO: Base.py(1333): PID:8825 10:32:56 01 Feb 2017 UTC: INFO: Base.py(1375): Started processing 10:32:56 01 Feb 2017 UTC 10:32:56 01 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:32:56 01 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:32:56 01 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:32:56 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:32:56 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:77 calls_made:1 call_cycle:0 10:32:56 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:32:56 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:77 calls_made:1 call_cycle:0 10:32:56 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:32:56 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:77 calls_made:1 call_cycle:0 10:32:56 01 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:77 calls_made:1 call_cycle:0 2252.1960 -15802.7540 02/01/17 10:28:18 UTC) to sdrifter@soest.hawaii.edu 10:32:56 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:77 calls_made:1 call_cycle:0 10:32:56 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:32:56 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:77 calls_made:1 call_cycle:0 10:32:56 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:32:56 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:77 calls_made:1 call_cycle:0 10:32:56 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:32:56 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:77 calls_made:1 call_cycle:0 10:32:56 01 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:32:56 01 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:32:58 01 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:32:58 01 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:32:58 01 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:32:58 01 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:32:58 01 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:32:58 01 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:32:58 01 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0077lz 10:32:58 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0077lz.x00 10:32:58 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0077lz.x01 10:32:58 01 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0077lz.r in process_file_group 10:32:58 01 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260077.log 10:32:58 01 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:32:58 01 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0077dz 10:32:58 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0077dz.x00 10:32:58 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0077dz.x01 10:32:58 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0077dz.x02 10:32:58 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0077dz.x03 10:32:58 01 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0077dz.r in process_file_group 10:32:59 01 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [77] 10:32:59 01 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [77] 10:32:59 01 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260077) for profiles 10:32:59 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 10:32:59 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/557) 557 to QC_BAD because CT out of water 10:32:59 01 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.053m) 10:32:59 01 Feb 2017 UTC: INFO: QC.py(408): Changed (1/557) 2 to QC_PROBABLY_BAD because raw conductivity spikes 10:32:59 01 Feb 2017 UTC: INFO: QC.py(180): Changed (1/557) 2 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 10:32:59 01 Feb 2017 UTC: INFO: QC.py(180): Changed (1/557) 557 to QC_BAD because changed raw cond implies changed raw salinity 10:32:59 01 Feb 2017 UTC: INFO: QC.py(408): Changed (1/557) 2 to QC_INTERPOLATED because conductivity spikes 10:32:59 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/557) 217:222 to QC_BAD because slow apogee CT flow 10:32:59 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/557) 1:6 to QC_BAD because prior to dive start 10:32:59 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/557) 1:6 217:222 557 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:32:59 01 Feb 2017 UTC: INFO: QC.py(180): Changed (13/557) 1:6 217:222 557 to QC_BAD because changed corrected salin implies changed speed 10:33:00 01 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 10:33:00 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.11 cm/s 10:33:00 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.38 cm/s 10:33:00 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:33:00 01 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (155/557) 118:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:33:00 01 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (155/557) 118:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 10:33:00 01 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/557) 336 to QC_BAD because bad aa4330 oyxgen 10:33:00 01 Feb 2017 UTC: INFO: QC.py(180): Changed (13/557) 1:6 217:222 557 to QC_BAD because changed salinity implies changed optode oxygen 10:33:00 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:33:00 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 10:33:00 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 77: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.33% reduction 10:33:00 01 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.77 10:33:00 01 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.77 10:33:00 01 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:33:00 01 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:33:00 01 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:33:00 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 10:33:00 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 10:33:27 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 10:33:27 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 10:33:27 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 10:33:33 01 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:33:33 01 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:33:33 01 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 10:33:33 01 Feb 2017 UTC /home/sg626/p6260077.log /home/sg626/p6260077.eng /home/sg626/p6260077.asc /home/sg626/p6260077.pro /home/sg626/p6260077.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 10:33:33 01 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:33:33 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:33:33 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:33:33 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:33:33 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:33:33 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:33:33 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:33:33 01 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:33:33 01 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:33:33 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:33:33 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:33:33 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:33:33 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:33:33 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:33:33 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:33:33 01 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:33:33 01 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:33:33 01 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:33:33 01 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:33:33 01 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:33:33 01 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:33:33 01 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:33:33 01 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:33:33 01 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 10:33:33 01 Feb 2017 UTC 13:29:11 01 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 13961 13:29:11 01 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 13:32:05 01 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 14244 13:32:05 01 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:32:05 01 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:32:05 01 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:32:05 01 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:32:05 01 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170201033205 ] 13:32:05 01 Feb 2017 UTC: INFO: Base.py(1333): PID:14252 13:32:06 01 Feb 2017 UTC: INFO: Base.py(1375): Started processing 13:32:06 01 Feb 2017 UTC 13:32:06 01 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:32:06 01 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:32:06 01 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:32:06 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:32:06 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:78 calls_made:1 call_cycle:0 13:32:06 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:32:06 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:78 calls_made:1 call_cycle:0 13:32:06 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:32:06 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:78 calls_made:1 call_cycle:0 13:32:06 01 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:78 calls_made:1 call_cycle:0 2251.6960 -15803.5970 02/01/17 13:27:14 UTC) to sdrifter@soest.hawaii.edu 13:32:06 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:78 calls_made:1 call_cycle:0 13:32:06 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:32:06 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:78 calls_made:1 call_cycle:0 13:32:06 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:32:06 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:78 calls_made:1 call_cycle:0 13:32:06 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:32:06 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:78 calls_made:1 call_cycle:0 13:32:06 01 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:32:06 01 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:32:08 01 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:32:08 01 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:32:08 01 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:32:08 01 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:32:08 01 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:32:08 01 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:32:08 01 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0078lz 13:32:08 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0078lz.x00 13:32:08 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0078lz.x01 13:32:08 01 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0078lz.r in process_file_group 13:32:08 01 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260078.log 13:32:08 01 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:32:08 01 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0078dz 13:32:08 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0078dz.x00 13:32:08 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0078dz.x01 13:32:08 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0078dz.x02 13:32:08 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0078dz.x03 13:32:08 01 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0078dz.r in process_file_group 13:32:08 01 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [78] 13:32:08 01 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [78] 13:32:08 01 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260078) for profiles 13:32:08 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:32:08 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/547) 547 to QC_BAD because CT out of water 13:32:08 01 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.157m) 13:32:09 01 Feb 2017 UTC: INFO: QC.py(365): Changed (2/547) 2 3 to QC_PROBABLY_BAD because raw temperature spikes 13:32:09 01 Feb 2017 UTC: INFO: QC.py(180): Changed (2/547) 2 3 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:32:09 01 Feb 2017 UTC: INFO: QC.py(180): Changed (1/547) 547 to QC_BAD because changed raw cond implies changed raw salinity 13:32:09 01 Feb 2017 UTC: INFO: QC.py(365): Changed (2/547) 2 3 to QC_INTERPOLATED because temperature spikes 13:32:09 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/547) 220:225 to QC_BAD because slow apogee CT flow 13:32:09 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/547) 1:6 to QC_BAD because prior to dive start 13:32:09 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/547) 546 to QC_BAD because end of climb 13:32:09 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/547) 1:6 220:225 546 547 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:32:09 01 Feb 2017 UTC: INFO: QC.py(180): Changed (14/547) 1:6 220:225 546 547 to QC_BAD because changed corrected salin implies changed speed 13:32:09 01 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:32:09 01 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 78 interp_salinity data_points in_between 282 335 % suspect thermal-inertia points 331 332 13:32:09 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.58 cm/s 13:32:09 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.57 cm/s 13:32:09 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:32:09 01 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (154/547) 119 120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:32:09 01 Feb 2017 UTC: INFO: QC.py(180): Changed (2/547) 2 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:32:09 01 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (154/547) 119 120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:32:09 01 Feb 2017 UTC: INFO: QC.py(180): Changed (2/547) 2 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:32:09 01 Feb 2017 UTC: INFO: QC.py(180): Changed (14/547) 1:6 220:225 546 547 to QC_BAD because changed salinity implies changed optode oxygen 13:32:09 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:32:09 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:32:10 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 78: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.56% reduction 13:32:10 01 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.78 13:32:10 01 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.78 13:32:10 01 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:32:10 01 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:32:10 01 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:32:10 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:32:10 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:32:37 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 13:32:37 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:32:37 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:32:43 01 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:32:43 01 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:32:43 01 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:32:43 01 Feb 2017 UTC /home/sg626/p6260078.log /home/sg626/p6260078.eng /home/sg626/p6260078.asc /home/sg626/p6260078.pro /home/sg626/p6260078.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:32:43 01 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:32:43 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:32:43 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:32:43 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:32:43 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:32:43 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:32:43 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:32:43 01 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:32:43 01 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:32:43 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:32:43 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:32:43 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:32:43 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:32:43 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:32:43 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:32:43 01 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:32:43 01 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:32:43 01 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:32:43 01 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:32:43 01 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:32:43 01 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:32:43 01 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:32:43 01 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:32:43 01 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 13:32:43 01 Feb 2017 UTC 16:31:28 01 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 19060 16:31:28 01 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 16:34:00 01 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 19175 16:34:00 01 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:34:00 01 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:34:00 01 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:34:00 01 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:34:00 01 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170201063359 ] 16:34:00 01 Feb 2017 UTC: INFO: Base.py(1333): PID:19183 16:34:00 01 Feb 2017 UTC: INFO: Base.py(1375): Started processing 16:34:00 01 Feb 2017 UTC 16:34:00 01 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:34:00 01 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:34:00 01 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:34:00 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:34:00 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:79 calls_made:1 call_cycle:0 16:34:00 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:34:00 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:79 calls_made:1 call_cycle:0 16:34:00 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:34:00 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:79 calls_made:1 call_cycle:0 16:34:00 01 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:79 calls_made:1 call_cycle:0 2251.3280 -15804.7070 02/01/17 16:29:30 UTC) to sdrifter@soest.hawaii.edu 16:34:00 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:79 calls_made:1 call_cycle:0 16:34:00 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:34:00 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:79 calls_made:1 call_cycle:0 16:34:00 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:34:00 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:79 calls_made:1 call_cycle:0 16:34:00 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:34:00 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:79 calls_made:1 call_cycle:0 16:34:00 01 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:34:00 01 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:34:02 01 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:34:02 01 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:34:02 01 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:34:02 01 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:34:02 01 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:34:02 01 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:34:02 01 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0079lz 16:34:02 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0079lz.x00 16:34:02 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0079lz.x01 16:34:02 01 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0079lz.r in process_file_group 16:34:02 01 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260079.log 16:34:02 01 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:34:02 01 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0079dz 16:34:02 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0079dz.x00 16:34:02 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0079dz.x01 16:34:02 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0079dz.x02 16:34:02 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0079dz.x03 16:34:02 01 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0079dz.r in process_file_group 16:34:02 01 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [79] 16:34:02 01 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [79] 16:34:03 01 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260079) for profiles 16:34:03 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:34:03 01 Feb 2017 UTC: INFO: QC.py(365): Changed (2/562) 3 4 to QC_PROBABLY_BAD because raw temperature spikes 16:34:03 01 Feb 2017 UTC: INFO: QC.py(377): Changed (1/562) 562 to QC_BAD because raw salinity below bound 16:34:03 01 Feb 2017 UTC: INFO: QC.py(388): Changed (1/562) 562 to QC_BAD because bad raw salinity indicates raw conductivity issues 16:34:03 01 Feb 2017 UTC: INFO: QC.py(180): Changed (2/562) 3 4 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:34:03 01 Feb 2017 UTC: INFO: QC.py(365): Changed (2/562) 3 4 to QC_INTERPOLATED because temperature spikes 16:34:03 01 Feb 2017 UTC: INFO: QC.py(377): Changed (1/562) 562 to QC_BAD because salinity below bound 16:34:03 01 Feb 2017 UTC: INFO: QC.py(388): Changed (1/562) 562 to QC_BAD because bad salinity indicates conductivity issues 16:34:03 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/562) 221:226 to QC_BAD because slow apogee CT flow 16:34:03 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/562) 1:6 to QC_BAD because prior to dive start 16:34:03 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/562) 1:6 221:226 562 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:34:03 01 Feb 2017 UTC: INFO: QC.py(180): Changed (13/562) 1:6 221:226 562 to QC_BAD because changed corrected salin implies changed speed 16:34:03 01 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:34:03 01 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 79 interp_salinity data_points in_between 91 173 % suspect thermal-inertia points 113 16:34:03 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.54 cm/s 16:34:03 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.63 cm/s 16:34:03 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:34:03 01 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (153/562) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:34:03 01 Feb 2017 UTC: INFO: QC.py(180): Changed (2/562) 3 4 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:34:03 01 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (153/562) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:34:03 01 Feb 2017 UTC: INFO: QC.py(180): Changed (2/562) 3 4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:34:03 01 Feb 2017 UTC: INFO: QC.py(180): Changed (13/562) 1:6 221:226 562 to QC_BAD because changed salinity implies changed optode oxygen 16:34:03 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:34:03 01 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:34:03 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:34:04 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 79: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.31% reduction 16:34:04 01 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.79 16:34:04 01 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.79 16:34:04 01 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:34:04 01 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:34:04 01 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:34:04 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:34:04 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:34:32 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 16:34:32 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:34:32 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:34:38 01 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:34:38 01 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:34:38 01 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:34:38 01 Feb 2017 UTC /home/sg626/p6260079.log /home/sg626/p6260079.eng /home/sg626/p6260079.asc /home/sg626/p6260079.pro /home/sg626/p6260079.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:34:38 01 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:34:38 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:34:38 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:34:38 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:34:38 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:34:38 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:34:38 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:34:38 01 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:34:38 01 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:34:38 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:34:38 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:34:38 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:34:38 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:34:38 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:34:38 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:34:38 01 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:34:38 01 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:34:38 01 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:34:38 01 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:34:38 01 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:34:38 01 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:34:38 01 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:34:38 01 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:34:38 01 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 16:34:38 01 Feb 2017 UTC 19:36:48 01 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 24331 19:36:48 01 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 19:39:15 01 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 24447 19:39:15 01 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:39:15 01 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:39:15 01 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:39:15 01 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:39:15 01 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170201093915 ] 19:39:15 01 Feb 2017 UTC: INFO: Base.py(1333): PID:24455 19:39:16 01 Feb 2017 UTC: INFO: Base.py(1375): Started processing 19:39:16 01 Feb 2017 UTC 19:39:16 01 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:39:16 01 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:39:16 01 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:39:16 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:39:16 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:80 calls_made:1 call_cycle:0 19:39:16 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:39:16 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:80 calls_made:1 call_cycle:0 19:39:16 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:39:16 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:80 calls_made:1 call_cycle:0 19:39:16 01 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:80 calls_made:1 call_cycle:0 2250.8640 -15805.4910 02/01/17 19:34:49 UTC) to sdrifter@soest.hawaii.edu 19:39:16 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:80 calls_made:1 call_cycle:0 19:39:16 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:39:16 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:80 calls_made:1 call_cycle:0 19:39:16 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:39:16 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:80 calls_made:1 call_cycle:0 19:39:16 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:39:16 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:80 calls_made:1 call_cycle:0 19:39:16 01 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:39:16 01 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:39:18 01 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:39:18 01 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:39:18 01 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:39:18 01 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:39:18 01 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:39:18 01 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:39:18 01 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0080lz 19:39:18 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0080lz.x00 19:39:18 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0080lz.x01 19:39:18 01 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0080lz.r in process_file_group 19:39:18 01 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260080.log 19:39:18 01 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:39:18 01 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0080dz 19:39:18 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0080dz.x00 19:39:18 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0080dz.x01 19:39:18 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0080dz.x02 19:39:18 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0080dz.x03 19:39:18 01 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0080dz.r in process_file_group 19:39:18 01 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [80] 19:39:18 01 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [80] 19:39:18 01 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260080) for profiles 19:39:18 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 19:39:19 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/577) 577 to QC_BAD because CT out of water 19:39:19 01 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.005m) 19:39:19 01 Feb 2017 UTC: INFO: QC.py(365): Changed (2/577) 190 222 to QC_PROBABLY_BAD because raw temperature spikes 19:39:19 01 Feb 2017 UTC: INFO: QC.py(377): Changed (1/577) 577 to QC_BAD because raw salinity below bound 19:39:19 01 Feb 2017 UTC: INFO: QC.py(180): Changed (2/577) 190 222 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:39:19 01 Feb 2017 UTC: INFO: QC.py(365): Changed (2/577) 190 222 to QC_INTERPOLATED because temperature spikes 19:39:19 01 Feb 2017 UTC: INFO: QC.py(377): Changed (1/577) 577 to QC_BAD because salinity below bound 19:39:19 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/577) 220:225 to QC_BAD because slow apogee CT flow 19:39:19 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/577) 1:6 to QC_BAD because prior to dive start 19:39:19 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/577) 1:6 220:225 577 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:39:19 01 Feb 2017 UTC: INFO: QC.py(180): Changed (13/577) 1:6 220:225 577 to QC_BAD because changed corrected salin implies changed speed 19:39:19 01 Feb 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 576 19:39:19 01 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:39:19 01 Feb 2017 UTC: INFO: QC.py(180): Changed (1/577) 190 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 19:39:19 01 Feb 2017 UTC: INFO: QC.py(180): Changed (1/577) 190 to QC_INTERPOLATED because changed corrected temp implies changed speed 19:39:19 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.21 cm/s 19:39:19 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.11 cm/s 19:39:19 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:39:19 01 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (158/577) 114 115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:39:19 01 Feb 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/577) 576 to QC_BAD because slow flow in SBE43 19:39:19 01 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (158/577) 114 115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 19:39:19 01 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/577) 327 to QC_BAD because bad aa4330 oyxgen 19:39:19 01 Feb 2017 UTC: INFO: QC.py(180): Changed (13/577) 1:6 220:225 577 to QC_BAD because changed salinity implies changed optode oxygen 19:39:19 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:39:19 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 19:39:20 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 80: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.25% reduction 19:39:20 01 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.80 19:39:20 01 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.80 19:39:20 01 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:39:20 01 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:39:20 01 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:39:20 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 19:39:20 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 19:39:48 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 19:39:48 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 19:39:48 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 19:39:54 01 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:39:54 01 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:39:54 01 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:39:54 01 Feb 2017 UTC /home/sg626/p6260080.log /home/sg626/p6260080.eng /home/sg626/p6260080.asc /home/sg626/p6260080.pro /home/sg626/p6260080.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 19:39:54 01 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:39:54 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:39:54 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:39:54 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:39:54 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:39:54 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:39:54 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:39:54 01 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:39:54 01 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:39:54 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:39:54 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:39:54 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:39:54 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:39:54 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:39:54 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:39:54 01 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:39:54 01 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:39:54 01 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:39:54 01 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:39:54 01 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:39:54 01 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:39:54 01 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:39:54 01 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:39:54 01 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 19:39:54 01 Feb 2017 UTC 21:32:22 01 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 27845 21:32:22 01 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 21:34:52 01 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 27971 21:34:52 01 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:34:52 01 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:34:52 01 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:34:52 01 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:34:52 01 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170201113452 ] 21:34:52 01 Feb 2017 UTC: INFO: Base.py(1333): PID:27978 21:34:52 01 Feb 2017 UTC: INFO: Base.py(1375): Started processing 21:34:52 01 Feb 2017 UTC 21:34:52 01 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:34:53 01 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:34:53 01 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:34:53 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:34:53 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:81 calls_made:1 call_cycle:0 21:34:53 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:34:53 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:81 calls_made:1 call_cycle:0 21:34:53 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:34:53 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:81 calls_made:1 call_cycle:0 21:34:53 01 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:81 calls_made:1 call_cycle:0 2251.4950 -15804.9620 02/01/17 21:30:31 UTC) to sdrifter@soest.hawaii.edu 21:34:53 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:81 calls_made:1 call_cycle:0 21:34:53 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:34:53 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:81 calls_made:1 call_cycle:0 21:34:53 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:34:53 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:81 calls_made:1 call_cycle:0 21:34:53 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:34:53 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:81 calls_made:1 call_cycle:0 21:34:53 01 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:34:53 01 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:34:55 01 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:34:55 01 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:34:55 01 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:34:55 01 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:34:55 01 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:34:55 01 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:34:55 01 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0081lz 21:34:55 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0081lz.x00 21:34:55 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0081lz.x01 21:34:55 01 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0081lz.r in process_file_group 21:34:55 01 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260081.log 21:34:55 01 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:34:55 01 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0081dz 21:34:55 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0081dz.x00 21:34:55 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0081dz.x01 21:34:55 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0081dz.x02 21:34:55 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0081dz.x03 21:34:55 01 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0081dz.r in process_file_group 21:34:55 01 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [81] 21:34:55 01 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [81] 21:34:55 01 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260081) for profiles 21:34:55 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:34:55 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/481) 479 to QC_BAD because CT out of water 21:34:55 01 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.043m) 21:34:55 01 Feb 2017 UTC: INFO: QC.py(365): Changed (2/481) 2 3 to QC_PROBABLY_BAD because raw temperature spikes 21:34:55 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/481) 481 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 21:34:55 01 Feb 2017 UTC: INFO: QC.py(180): Changed (2/481) 2 3 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:34:55 01 Feb 2017 UTC: INFO: QC.py(180): Changed (2/481) 479 481 to QC_BAD because changed raw cond implies changed raw salinity 21:34:55 01 Feb 2017 UTC: INFO: QC.py(365): Changed (2/481) 2 3 to QC_INTERPOLATED because temperature spikes 21:34:55 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/481) 481 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 21:34:55 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (4/481) 162:165 to QC_BAD because slow apogee CT flow 21:34:55 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/481) 1:6 to QC_BAD because prior to dive start 21:34:55 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/481) 478 480 to QC_BAD because end of climb 21:34:55 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/481) 1:6 162:165 478:481 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:34:55 01 Feb 2017 UTC: INFO: QC.py(180): Changed (14/481) 1:6 162:165 478:481 to QC_BAD because changed corrected salin implies changed speed 21:34:56 01 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:34:56 01 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 81 interp_salinity data_points in_between 193 220 % suspect thermal-inertia points 217:219 21:34:56 01 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 81 interp_salinity data_points in_between 227 232 % suspect thermal-inertia points 228 229 21:34:56 01 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 81 interp_salinity data_points in_between 292 305 % suspect thermal-inertia points 294 21:34:56 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.23 cm/s 21:34:56 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.52 cm/s 21:34:56 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:34:56 01 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (70/481) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:34:56 01 Feb 2017 UTC: INFO: QC.py(180): Changed (2/481) 2 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:34:56 01 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (70/481) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:34:56 01 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/481) 481 to QC_BAD because bad aa4330 oyxgen 21:34:56 01 Feb 2017 UTC: INFO: QC.py(180): Changed (2/481) 2 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:34:56 01 Feb 2017 UTC: INFO: QC.py(180): Changed (13/481) 1:6 162:165 478:480 to QC_BAD because changed salinity implies changed optode oxygen 21:34:56 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:34:56 01 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:34:56 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:34:56 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 81: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.91% reduction 21:34:56 01 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.81 21:34:56 01 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.81 21:34:56 01 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:34:56 01 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:34:56 01 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:34:56 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:34:56 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 21:35:25 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 21:35:25 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 21:35:25 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 21:35:31 01 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:35:31 01 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:35:31 01 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:35:31 01 Feb 2017 UTC /home/sg626/p6260081.log /home/sg626/p6260081.eng /home/sg626/p6260081.asc /home/sg626/p6260081.pro /home/sg626/p6260081.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 21:35:31 01 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:35:31 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:35:31 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:35:31 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:35:31 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:35:31 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:35:31 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:35:31 01 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:35:31 01 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:35:31 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:35:31 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:35:31 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:35:31 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:35:31 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:35:31 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:35:31 01 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:35:31 01 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:35:31 01 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:35:31 01 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:35:31 01 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:35:31 01 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:35:31 01 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:35:31 01 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:35:31 01 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 21:35:31 01 Feb 2017 UTC 23:26:03 01 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 31476 23:26:03 01 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 23:28:29 01 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 31592 23:28:29 01 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:28:29 01 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:28:29 01 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:28:29 01 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:28:29 01 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170201132829 ] 23:28:29 01 Feb 2017 UTC: INFO: Base.py(1333): PID:31600 23:28:29 01 Feb 2017 UTC: INFO: Base.py(1375): Started processing 23:28:29 01 Feb 2017 UTC 23:28:29 01 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:28:30 01 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:28:30 01 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:28:30 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:28:30 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:82 calls_made:1 call_cycle:0 23:28:30 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:28:30 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:82 calls_made:1 call_cycle:0 23:28:30 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:28:30 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:82 calls_made:1 call_cycle:0 23:28:30 01 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:82 calls_made:1 call_cycle:0 2251.6190 -15804.7680 02/01/17 23:24:11 UTC) to sdrifter@soest.hawaii.edu 23:28:30 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:82 calls_made:1 call_cycle:0 23:28:30 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:28:30 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:82 calls_made:1 call_cycle:0 23:28:30 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:28:30 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:82 calls_made:1 call_cycle:0 23:28:30 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:28:30 01 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:82 calls_made:1 call_cycle:0 23:28:30 01 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:28:30 01 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:28:32 01 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:28:32 01 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:28:32 01 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:28:32 01 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:28:32 01 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:28:32 01 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:28:32 01 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0082lz 23:28:32 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0082lz.x00 23:28:32 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0082lz.x01 23:28:32 01 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0082lz.r in process_file_group 23:28:32 01 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260082.log 23:28:32 01 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:28:32 01 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0082dz 23:28:32 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0082dz.x00 23:28:32 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0082dz.x01 23:28:32 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0082dz.x02 23:28:32 01 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0082dz.x03 23:28:32 01 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0082dz.r in process_file_group 23:28:32 01 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [82] 23:28:32 01 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [82] 23:28:32 01 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260082) for profiles 23:28:32 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 23:28:32 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/472) 471 472 to QC_BAD because CT out of water 23:28:32 01 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.013m) 23:28:32 01 Feb 2017 UTC: INFO: QC.py(365): Changed (1/472) 5 to QC_PROBABLY_BAD because raw temperature spikes 23:28:32 01 Feb 2017 UTC: INFO: QC.py(377): Changed (1/472) 472 to QC_BAD because raw salinity below bound 23:28:32 01 Feb 2017 UTC: INFO: QC.py(180): Changed (1/472) 5 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 23:28:32 01 Feb 2017 UTC: INFO: QC.py(180): Changed (1/472) 471 to QC_BAD because changed raw cond implies changed raw salinity 23:28:32 01 Feb 2017 UTC: INFO: QC.py(365): Changed (1/472) 5 to QC_INTERPOLATED because temperature spikes 23:28:32 01 Feb 2017 UTC: INFO: QC.py(377): Changed (1/472) 472 to QC_BAD because salinity below bound 23:28:32 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/472) 169:174 to QC_BAD because slow apogee CT flow 23:28:32 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/472) 1:6 to QC_BAD because prior to dive start 23:28:32 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/472) 1:6 169:174 471 472 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 23:28:32 01 Feb 2017 UTC: INFO: QC.py(180): Changed (14/472) 1:6 169:174 471 472 to QC_BAD because changed corrected salin implies changed speed 23:28:33 01 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 23:28:33 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.38 cm/s 23:28:33 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.03 cm/s 23:28:33 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 23:28:33 01 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (70/472) 128:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 23:28:33 01 Feb 2017 UTC: INFO: QC.py(180): Changed (1/472) 5 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 23:28:33 01 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (70/472) 128:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 23:28:33 01 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/472) 470 to QC_BAD because bad aa4330 oyxgen 23:28:33 01 Feb 2017 UTC: INFO: QC.py(180): Changed (1/472) 5 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 23:28:33 01 Feb 2017 UTC: INFO: QC.py(180): Changed (14/472) 1:6 169:174 471 472 to QC_BAD because changed salinity implies changed optode oxygen 23:28:33 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 23:28:33 01 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 23:28:33 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 82: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.97% reduction 23:28:33 01 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.82 23:28:33 01 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.82 23:28:33 01 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:28:33 01 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:28:33 01 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:28:33 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 23:28:33 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 23:29:02 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 23:29:03 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 23:29:03 01 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 23:29:09 01 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:29:09 01 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:29:09 01 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:29:09 01 Feb 2017 UTC /home/sg626/p6260082.log /home/sg626/p6260082.eng /home/sg626/p6260082.asc /home/sg626/p6260082.pro /home/sg626/p6260082.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 23:29:09 01 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:29:09 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:29:09 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:29:09 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:29:09 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:29:09 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:29:09 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:29:09 01 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:29:09 01 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:29:09 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:29:09 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:29:09 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:29:09 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:29:09 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:29:09 01 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:29:09 01 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:29:09 01 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:29:09 01 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:29:09 01 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:29:09 01 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:29:09 01 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:29:09 01 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:29:09 01 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:29:09 01 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 23:29:09 01 Feb 2017 UTC 01:22:43 02 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 2907 01:22:43 02 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 01:25:28 02 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 3032 01:25:28 02 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:25:28 02 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:25:28 02 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:25:28 02 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:25:28 02 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170201152528 ] 01:25:28 02 Feb 2017 UTC: INFO: Base.py(1333): PID:3040 01:25:28 02 Feb 2017 UTC: INFO: Base.py(1375): Started processing 01:25:28 02 Feb 2017 UTC 01:25:28 02 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:25:29 02 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:25:29 02 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:25:29 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:25:29 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:83 calls_made:1 call_cycle:0 01:25:29 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:25:29 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:83 calls_made:1 call_cycle:0 01:25:29 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:25:29 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:83 calls_made:1 call_cycle:0 01:25:29 02 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:83 calls_made:1 call_cycle:0 2251.3840 -15805.0970 02/02/17 01:20:55 UTC) to sdrifter@soest.hawaii.edu 01:25:29 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:83 calls_made:1 call_cycle:0 01:25:29 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:25:29 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:83 calls_made:1 call_cycle:0 01:25:29 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:25:29 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:83 calls_made:1 call_cycle:0 01:25:29 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:25:29 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:83 calls_made:1 call_cycle:0 01:25:29 02 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:25:29 02 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:25:30 02 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:25:31 02 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:25:31 02 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:25:31 02 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:25:31 02 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:25:31 02 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:25:31 02 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0083lz 01:25:31 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0083lz.x00 01:25:31 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0083lz.x01 01:25:31 02 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0083lz.r in process_file_group 01:25:31 02 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260083.log 01:25:31 02 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:25:31 02 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0083dz 01:25:31 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0083dz.x00 01:25:31 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0083dz.x01 01:25:31 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0083dz.x02 01:25:31 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0083dz.x03 01:25:31 02 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0083dz.r in process_file_group 01:25:31 02 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [83] 01:25:31 02 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [83] 01:25:31 02 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260083) for profiles 01:25:31 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:25:31 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/495) 494 495 to QC_BAD because CT out of water 01:25:31 02 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.109m) 01:25:31 02 Feb 2017 UTC: INFO: QC.py(365): Changed (2/495) 177 494 to QC_PROBABLY_BAD because raw temperature spikes 01:25:31 02 Feb 2017 UTC: INFO: QC.py(377): Changed (1/495) 495 to QC_BAD because raw salinity below bound 01:25:31 02 Feb 2017 UTC: INFO: QC.py(180): Changed (2/495) 177 494 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:25:31 02 Feb 2017 UTC: INFO: QC.py(180): Changed (1/495) 494 to QC_BAD because changed raw cond implies changed raw salinity 01:25:31 02 Feb 2017 UTC: INFO: QC.py(365): Changed (2/495) 177 494 to QC_INTERPOLATED because temperature spikes 01:25:31 02 Feb 2017 UTC: INFO: QC.py(377): Changed (1/495) 495 to QC_BAD because salinity below bound 01:25:31 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/495) 175:180 to QC_BAD because slow apogee CT flow 01:25:31 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (5/495) 1:5 to QC_BAD because prior to dive start 01:25:31 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/495) 493 to QC_BAD because end of climb 01:25:31 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/495) 1:5 175:180 493:495 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:25:31 02 Feb 2017 UTC: INFO: QC.py(180): Changed (14/495) 1:5 175:180 493:495 to QC_BAD because changed corrected salin implies changed speed 01:25:32 02 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:25:32 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.19 cm/s 01:25:32 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 2.77 cm/s 01:25:32 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:25:32 02 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (71/495) 133:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:25:32 02 Feb 2017 UTC: INFO: QC.py(180): Changed (1/495) 494 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 01:25:32 02 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (71/495) 133:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 01:25:32 02 Feb 2017 UTC: INFO: QC.py(180): Changed (1/495) 494 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 01:25:32 02 Feb 2017 UTC: INFO: QC.py(180): Changed (14/495) 1:5 175:180 493:495 to QC_BAD because changed salinity implies changed optode oxygen 01:25:32 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:25:32 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:25:32 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 83: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.83% reduction 01:25:32 02 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.83 01:25:32 02 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.83 01:25:32 02 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:25:32 02 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:25:32 02 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:25:32 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:25:32 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 01:26:02 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 01:26:02 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 01:26:02 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 01:26:08 02 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:26:08 02 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:26:08 02 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:26:08 02 Feb 2017 UTC /home/sg626/p6260083.log /home/sg626/p6260083.eng /home/sg626/p6260083.asc /home/sg626/p6260083.pro /home/sg626/p6260083.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 01:26:08 02 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:26:08 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:26:08 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:26:08 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:26:08 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:26:08 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:26:08 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:26:08 02 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:26:08 02 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:26:08 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:26:08 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:26:08 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:26:08 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:26:08 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:26:08 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:26:08 02 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:26:08 02 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:26:08 02 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:26:08 02 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:26:08 02 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:26:08 02 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:26:08 02 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:26:08 02 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:26:08 02 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 01:26:08 02 Feb 2017 UTC 03:19:24 02 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 6222 03:19:24 02 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 03:21:54 02 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 6504 03:21:54 02 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:21:54 02 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:21:54 02 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:21:54 02 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:21:54 02 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170201172154 ] 03:21:54 02 Feb 2017 UTC: INFO: Base.py(1333): PID:6512 03:21:54 02 Feb 2017 UTC: INFO: Base.py(1375): Started processing 03:21:54 02 Feb 2017 UTC 03:21:54 02 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:21:55 02 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:21:55 02 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:21:55 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:21:55 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:84 calls_made:1 call_cycle:0 03:21:55 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:21:55 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:84 calls_made:1 call_cycle:0 03:21:55 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:21:55 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:84 calls_made:1 call_cycle:0 03:21:55 02 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:84 calls_made:1 call_cycle:0 2251.0130 -15805.4550 02/02/17 03:17:30 UTC) to sdrifter@soest.hawaii.edu 03:21:55 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:84 calls_made:1 call_cycle:0 03:21:55 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:21:55 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:84 calls_made:1 call_cycle:0 03:21:55 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:21:55 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:84 calls_made:1 call_cycle:0 03:21:55 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:21:55 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:84 calls_made:1 call_cycle:0 03:21:55 02 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:21:55 02 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:21:56 02 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:21:57 02 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:21:57 02 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:21:57 02 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:21:57 02 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:21:57 02 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:21:57 02 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0084lz 03:21:57 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0084lz.x00 03:21:57 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0084lz.x01 03:21:57 02 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0084lz.r in process_file_group 03:21:57 02 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260084.log 03:21:57 02 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:21:57 02 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0084dz 03:21:57 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0084dz.x00 03:21:57 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0084dz.x01 03:21:57 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0084dz.x02 03:21:57 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0084dz.x03 03:21:57 02 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0084dz.r in process_file_group 03:21:57 02 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [84] 03:21:57 02 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [84] 03:21:57 02 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260084) for profiles 03:21:57 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 03:21:57 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/479) 478 479 to QC_BAD because CT out of water 03:21:57 02 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.092m) 03:21:57 02 Feb 2017 UTC: INFO: QC.py(377): Changed (1/479) 479 to QC_BAD because raw salinity below bound 03:21:57 02 Feb 2017 UTC: INFO: QC.py(180): Changed (1/479) 478 to QC_BAD because changed raw cond implies changed raw salinity 03:21:57 02 Feb 2017 UTC: INFO: QC.py(377): Changed (1/479) 479 to QC_BAD because salinity below bound 03:21:57 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/479) 170:175 to QC_BAD because slow apogee CT flow 03:21:57 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/479) 1:6 to QC_BAD because prior to dive start 03:21:57 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/479) 477 to QC_BAD because end of climb 03:21:57 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/479) 1:6 170:175 477:479 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:21:57 02 Feb 2017 UTC: INFO: QC.py(180): Changed (15/479) 1:6 170:175 477:479 to QC_BAD because changed corrected salin implies changed speed 03:21:58 02 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 03:21:58 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.20 cm/s 03:21:58 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.06 cm/s 03:21:58 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:21:58 02 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (71/479) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:21:58 02 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (71/479) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 03:21:58 02 Feb 2017 UTC: INFO: QC.py(180): Changed (15/479) 1:6 170:175 477:479 to QC_BAD because changed salinity implies changed optode oxygen 03:21:58 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:21:58 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 03:21:58 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 84: Data set size for profile, binned and kkyy files reduced by 15 points, a 3.13% reduction 03:21:58 02 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.84 03:21:58 02 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.84 03:21:58 02 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:21:58 02 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:21:58 02 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:21:58 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 03:21:58 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 03:22:28 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 03:22:29 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 03:22:29 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 03:22:35 02 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:22:35 02 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:22:35 02 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:22:35 02 Feb 2017 UTC /home/sg626/p6260084.log /home/sg626/p6260084.eng /home/sg626/p6260084.asc /home/sg626/p6260084.pro /home/sg626/p6260084.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 03:22:35 02 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:22:35 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:22:35 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:22:35 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:22:35 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:22:35 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:22:35 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:22:35 02 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:22:35 02 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:22:35 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:22:35 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:22:35 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:22:35 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:22:35 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:22:35 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:22:35 02 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:22:35 02 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:22:35 02 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:22:35 02 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:22:35 02 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:22:35 02 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:22:35 02 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:22:35 02 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:22:35 02 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 03:22:35 02 Feb 2017 UTC 05:12:58 02 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 9755 05:12:58 02 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 05:15:16 02 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 9861 05:15:16 02 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:15:16 02 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:15:16 02 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:15:16 02 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:15:16 02 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170201191515 ] 05:15:16 02 Feb 2017 UTC: INFO: Base.py(1333): PID:9869 05:15:16 02 Feb 2017 UTC: INFO: Base.py(1375): Started processing 05:15:16 02 Feb 2017 UTC 05:15:16 02 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:15:16 02 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:15:16 02 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:15:16 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:15:16 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:85 calls_made:1 call_cycle:0 05:15:16 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:15:16 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:85 calls_made:1 call_cycle:0 05:15:16 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:15:16 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:85 calls_made:1 call_cycle:0 05:15:16 02 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:85 calls_made:1 call_cycle:0 2250.7890 -15805.6780 02/02/17 05:11:13 UTC) to sdrifter@soest.hawaii.edu 05:15:16 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:85 calls_made:1 call_cycle:0 05:15:16 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:15:16 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:85 calls_made:1 call_cycle:0 05:15:16 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:15:16 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:85 calls_made:1 call_cycle:0 05:15:16 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:15:16 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:85 calls_made:1 call_cycle:0 05:15:16 02 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:15:16 02 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:15:18 02 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:15:18 02 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:15:18 02 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:15:18 02 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:15:18 02 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:15:18 02 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:15:18 02 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0085lz 05:15:18 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0085lz.x00 05:15:18 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0085lz.x01 05:15:18 02 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0085lz.r in process_file_group 05:15:18 02 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260085.log 05:15:18 02 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:15:18 02 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0085dz 05:15:18 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0085dz.x00 05:15:18 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0085dz.x01 05:15:18 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0085dz.x02 05:15:18 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0085dz.x03 05:15:18 02 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0085dz.r in process_file_group 05:15:19 02 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [85] 05:15:19 02 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [85] 05:15:19 02 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260085) for profiles 05:15:19 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:15:19 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/473) 472 473 to QC_BAD because CT out of water 05:15:19 02 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.099m) 05:15:19 02 Feb 2017 UTC: INFO: QC.py(365): Changed (3/473) 3 4 472 to QC_PROBABLY_BAD because raw temperature spikes 05:15:19 02 Feb 2017 UTC: INFO: QC.py(377): Changed (1/473) 473 to QC_BAD because raw salinity below bound 05:15:19 02 Feb 2017 UTC: INFO: QC.py(180): Changed (3/473) 3 4 472 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:15:19 02 Feb 2017 UTC: INFO: QC.py(180): Changed (1/473) 472 to QC_BAD because changed raw cond implies changed raw salinity 05:15:19 02 Feb 2017 UTC: INFO: QC.py(365): Changed (3/473) 3 4 472 to QC_INTERPOLATED because temperature spikes 05:15:19 02 Feb 2017 UTC: INFO: QC.py(377): Changed (1/473) 473 to QC_BAD because salinity below bound 05:15:19 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/473) 165:170 to QC_BAD because slow apogee CT flow 05:15:19 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/473) 1:6 to QC_BAD because prior to dive start 05:15:19 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/473) 471 to QC_BAD because end of climb 05:15:19 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/473) 1:6 165:170 471:473 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:15:19 02 Feb 2017 UTC: INFO: QC.py(180): Changed (15/473) 1:6 165:170 471:473 to QC_BAD because changed corrected salin implies changed speed 05:15:19 02 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:15:19 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.05 cm/s 05:15:19 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.13 cm/s 05:15:19 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:15:19 02 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (69/473) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:15:19 02 Feb 2017 UTC: INFO: QC.py(180): Changed (3/473) 3 4 472 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:15:19 02 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (69/473) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:15:19 02 Feb 2017 UTC: INFO: QC.py(180): Changed (3/473) 3 4 472 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:15:19 02 Feb 2017 UTC: INFO: QC.py(180): Changed (15/473) 1:6 165:170 471:473 to QC_BAD because changed salinity implies changed optode oxygen 05:15:19 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:15:19 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 05:15:20 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 85: Data set size for profile, binned and kkyy files reduced by 15 points, a 3.17% reduction 05:15:20 02 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.85 05:15:20 02 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.85 05:15:20 02 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:15:20 02 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:15:20 02 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:15:20 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 05:15:20 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 05:15:50 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 05:15:51 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 05:15:51 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 05:15:57 02 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:15:57 02 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:15:57 02 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:15:57 02 Feb 2017 UTC /home/sg626/p6260085.log /home/sg626/p6260085.eng /home/sg626/p6260085.asc /home/sg626/p6260085.pro /home/sg626/p6260085.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 05:15:57 02 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:15:57 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:15:57 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:15:57 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:15:57 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:15:57 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:15:57 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:15:57 02 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:15:57 02 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:15:57 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:15:57 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:15:57 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:15:57 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:15:57 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:15:57 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:15:57 02 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:15:57 02 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:15:57 02 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:15:57 02 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:15:57 02 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:15:57 02 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:15:57 02 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:15:57 02 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:15:57 02 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 05:15:57 02 Feb 2017 UTC 07:08:17 02 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 13225 07:08:18 02 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 07:10:47 02 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 13425 07:10:47 02 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:10:47 02 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:10:47 02 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:10:47 02 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:10:47 02 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170201211046 ] 07:10:47 02 Feb 2017 UTC: INFO: Base.py(1333): PID:13434 07:10:47 02 Feb 2017 UTC: INFO: Base.py(1375): Started processing 07:10:47 02 Feb 2017 UTC 07:10:47 02 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:10:47 02 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:10:47 02 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:10:47 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:10:47 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:86 calls_made:1 call_cycle:0 07:10:47 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:10:47 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:86 calls_made:1 call_cycle:0 07:10:47 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:10:47 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:86 calls_made:1 call_cycle:0 07:10:47 02 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:86 calls_made:1 call_cycle:0 2250.8260 -15805.7420 02/02/17 07:06:30 UTC) to sdrifter@soest.hawaii.edu 07:10:47 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:86 calls_made:1 call_cycle:0 07:10:47 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:10:47 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:86 calls_made:1 call_cycle:0 07:10:47 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:10:47 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:86 calls_made:1 call_cycle:0 07:10:47 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:10:47 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:86 calls_made:1 call_cycle:0 07:10:47 02 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:10:47 02 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:10:49 02 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:10:49 02 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:10:49 02 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:10:49 02 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:10:49 02 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:10:49 02 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:10:49 02 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0086lz 07:10:49 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0086lz.x00 07:10:49 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0086lz.x01 07:10:49 02 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0086lz.r in process_file_group 07:10:49 02 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260086.log 07:10:49 02 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:10:49 02 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0086dz 07:10:49 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0086dz.x00 07:10:49 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0086dz.x01 07:10:49 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0086dz.x02 07:10:49 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0086dz.x03 07:10:49 02 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0086dz.r in process_file_group 07:10:50 02 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [86] 07:10:50 02 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [86] 07:10:50 02 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260086) for profiles 07:10:50 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 07:10:50 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/488) 487 488 to QC_BAD because CT out of water 07:10:50 02 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.025m) 07:10:50 02 Feb 2017 UTC: INFO: QC.py(365): Changed (3/488) 3 4 487 to QC_PROBABLY_BAD because raw temperature spikes 07:10:50 02 Feb 2017 UTC: INFO: QC.py(377): Changed (2/488) 487 488 to QC_BAD because raw salinity below bound 07:10:50 02 Feb 2017 UTC: INFO: QC.py(180): Changed (2/488) 3 4 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:10:50 02 Feb 2017 UTC: INFO: QC.py(365): Changed (3/488) 3 4 487 to QC_INTERPOLATED because temperature spikes 07:10:50 02 Feb 2017 UTC: INFO: QC.py(377): Changed (2/488) 487 488 to QC_BAD because salinity below bound 07:10:50 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/488) 165:170 to QC_BAD because slow apogee CT flow 07:10:50 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/488) 1:6 to QC_BAD because prior to dive start 07:10:50 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/488) 486 to QC_BAD because end of climb 07:10:50 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/488) 1:6 165:170 486:488 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:10:50 02 Feb 2017 UTC: INFO: QC.py(180): Changed (15/488) 1:6 165:170 486:488 to QC_BAD because changed corrected salin implies changed speed 07:10:50 02 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:10:50 02 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 86 interp_salinity data_points in_between 235 239 % suspect thermal-inertia points 236 237 07:10:50 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.86 cm/s 07:10:50 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 2.72 cm/s 07:10:50 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:10:50 02 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (70/488) 123:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:10:50 02 Feb 2017 UTC: INFO: QC.py(180): Changed (3/488) 3 4 487 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:10:50 02 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (70/488) 123:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 07:10:50 02 Feb 2017 UTC: INFO: QC.py(180): Changed (3/488) 3 4 487 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:10:50 02 Feb 2017 UTC: INFO: QC.py(180): Changed (15/488) 1:6 165:170 486:488 to QC_BAD because changed salinity implies changed optode oxygen 07:10:50 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:10:50 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 07:10:51 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 86: Data set size for profile, binned and kkyy files reduced by 15 points, a 3.07% reduction 07:10:51 02 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.86 07:10:51 02 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.86 07:10:51 02 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:10:51 02 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:10:51 02 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:10:51 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 07:10:51 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:11:21 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 07:11:22 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:11:22 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:11:28 02 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:11:28 02 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:11:28 02 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:11:28 02 Feb 2017 UTC /home/sg626/p6260086.log /home/sg626/p6260086.eng /home/sg626/p6260086.asc /home/sg626/p6260086.pro /home/sg626/p6260086.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:11:28 02 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:11:28 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:11:28 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:11:28 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:11:28 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:11:28 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:11:28 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:11:28 02 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:11:28 02 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:11:28 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:11:28 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:11:28 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:11:28 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:11:28 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:11:28 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:11:28 02 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:11:28 02 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:11:28 02 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:11:28 02 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:11:28 02 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:11:28 02 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:11:28 02 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:11:28 02 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:11:28 02 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 07:11:28 02 Feb 2017 UTC 09:05:00 02 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 16686 09:05:00 02 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 09:07:17 02 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 16797 09:07:17 02 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:07:17 02 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:07:17 02 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:07:17 02 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:07:17 02 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170201230717 ] 09:07:17 02 Feb 2017 UTC: INFO: Base.py(1333): PID:16805 09:07:18 02 Feb 2017 UTC: INFO: Base.py(1375): Started processing 09:07:18 02 Feb 2017 UTC 09:07:18 02 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:07:18 02 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:07:18 02 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:07:18 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:07:18 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:87 calls_made:1 call_cycle:0 09:07:18 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:07:18 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:87 calls_made:1 call_cycle:0 09:07:18 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:07:18 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:87 calls_made:1 call_cycle:0 09:07:18 02 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:87 calls_made:1 call_cycle:0 2250.8980 -15805.8080 02/02/17 09:03:11 UTC) to sdrifter@soest.hawaii.edu 09:07:18 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:87 calls_made:1 call_cycle:0 09:07:18 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:07:18 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:87 calls_made:1 call_cycle:0 09:07:18 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:07:18 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:87 calls_made:1 call_cycle:0 09:07:18 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:07:18 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:87 calls_made:1 call_cycle:0 09:07:18 02 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:07:18 02 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:07:20 02 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:07:20 02 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:07:20 02 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:07:20 02 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:07:20 02 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:07:20 02 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:07:20 02 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0087lz 09:07:20 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0087lz.x00 09:07:20 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0087lz.x01 09:07:20 02 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0087lz.r in process_file_group 09:07:20 02 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260087.log 09:07:20 02 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:07:20 02 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0087dz 09:07:20 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0087dz.x00 09:07:20 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0087dz.x01 09:07:20 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0087dz.x02 09:07:20 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0087dz.x03 09:07:20 02 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0087dz.r in process_file_group 09:07:21 02 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [87] 09:07:21 02 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [87] 09:07:21 02 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260087) for profiles 09:07:21 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 09:07:21 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/484) 483 484 to QC_BAD because CT out of water 09:07:21 02 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.063m) 09:07:21 02 Feb 2017 UTC: INFO: QC.py(365): Changed (1/484) 483 to QC_PROBABLY_BAD because raw temperature spikes 09:07:21 02 Feb 2017 UTC: INFO: QC.py(377): Changed (2/484) 483 484 to QC_BAD because raw salinity below bound 09:07:21 02 Feb 2017 UTC: INFO: QC.py(365): Changed (1/484) 483 to QC_INTERPOLATED because temperature spikes 09:07:21 02 Feb 2017 UTC: INFO: QC.py(377): Changed (2/484) 483 484 to QC_BAD because salinity below bound 09:07:21 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/484) 168:173 to QC_BAD because slow apogee CT flow 09:07:21 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/484) 1:6 to QC_BAD because prior to dive start 09:07:21 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/484) 482 to QC_BAD because end of climb 09:07:21 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/484) 1:6 168:173 482:484 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:07:21 02 Feb 2017 UTC: INFO: QC.py(180): Changed (15/484) 1:6 168:173 482:484 to QC_BAD because changed corrected salin implies changed speed 09:07:21 02 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:07:21 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.03 cm/s 09:07:21 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 2.84 cm/s 09:07:21 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:07:21 02 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (72/484) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:07:21 02 Feb 2017 UTC: INFO: QC.py(180): Changed (1/484) 483 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:07:21 02 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (72/484) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 09:07:21 02 Feb 2017 UTC: INFO: QC.py(180): Changed (1/484) 483 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:07:21 02 Feb 2017 UTC: INFO: QC.py(180): Changed (15/484) 1:6 168:173 482:484 to QC_BAD because changed salinity implies changed optode oxygen 09:07:21 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:07:21 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 09:07:21 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 87: Data set size for profile, binned and kkyy files reduced by 15 points, a 3.10% reduction 09:07:22 02 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.87 09:07:22 02 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.87 09:07:22 02 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:07:22 02 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:07:22 02 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:07:22 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 09:07:22 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 09:07:52 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 09:07:52 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 09:07:52 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 09:07:59 02 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:07:59 02 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:07:59 02 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:07:59 02 Feb 2017 UTC /home/sg626/p6260087.log /home/sg626/p6260087.eng /home/sg626/p6260087.asc /home/sg626/p6260087.pro /home/sg626/p6260087.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 09:07:59 02 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:07:59 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:07:59 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:07:59 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:07:59 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:07:59 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:07:59 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:07:59 02 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:07:59 02 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:07:59 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:07:59 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:07:59 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:07:59 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:07:59 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:07:59 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:07:59 02 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:07:59 02 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:07:59 02 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:07:59 02 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:07:59 02 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:07:59 02 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:07:59 02 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:07:59 02 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:07:59 02 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 09:07:59 02 Feb 2017 UTC 12:11:33 02 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 22025 12:11:33 02 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 12:14:00 02 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 22144 12:14:00 02 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:14:00 02 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:14:00 02 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:14:00 02 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:14:00 02 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170202021359 ] 12:14:00 02 Feb 2017 UTC: INFO: Base.py(1333): PID:22152 12:14:00 02 Feb 2017 UTC: INFO: Base.py(1375): Started processing 12:14:00 02 Feb 2017 UTC 12:14:00 02 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:14:00 02 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:14:00 02 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:14:00 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:14:00 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:88 calls_made:1 call_cycle:0 12:14:00 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:14:00 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:88 calls_made:1 call_cycle:0 12:14:00 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:14:00 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:88 calls_made:1 call_cycle:0 12:14:00 02 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:88 calls_made:1 call_cycle:0 2250.3610 -15805.7120 02/02/17 12:09:30 UTC) to sdrifter@soest.hawaii.edu 12:14:00 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:88 calls_made:1 call_cycle:0 12:14:00 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:14:00 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:88 calls_made:1 call_cycle:0 12:14:00 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:14:00 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:88 calls_made:1 call_cycle:0 12:14:00 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:14:00 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:88 calls_made:1 call_cycle:0 12:14:00 02 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:14:00 02 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:14:02 02 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:14:02 02 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:14:02 02 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:14:02 02 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:14:02 02 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:14:02 02 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:14:02 02 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0088lz 12:14:02 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0088lz.x00 12:14:02 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0088lz.x01 12:14:02 02 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0088lz.r in process_file_group 12:14:02 02 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260088.log 12:14:02 02 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:14:02 02 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0088dz 12:14:02 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0088dz.x00 12:14:02 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0088dz.x01 12:14:02 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0088dz.x02 12:14:02 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0088dz.x03 12:14:02 02 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0088dz.r in process_file_group 12:14:03 02 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [88] 12:14:03 02 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [88] 12:14:03 02 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260088) for profiles 12:14:03 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 12:14:03 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/557) 556 557 to QC_BAD because CT out of water 12:14:03 02 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.154m) 12:14:03 02 Feb 2017 UTC: INFO: QC.py(377): Changed (2/557) 556 557 to QC_BAD because raw salinity below bound 12:14:03 02 Feb 2017 UTC: INFO: QC.py(377): Changed (2/557) 556 557 to QC_BAD because salinity below bound 12:14:03 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/557) 228:233 to QC_BAD because slow apogee CT flow 12:14:03 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/557) 1:6 to QC_BAD because prior to dive start 12:14:03 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/557) 555 to QC_BAD because end of climb 12:14:03 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/557) 1:6 228:233 555:557 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:14:03 02 Feb 2017 UTC: INFO: QC.py(180): Changed (15/557) 1:6 228:233 555:557 to QC_BAD because changed corrected salin implies changed speed 12:14:03 02 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:14:03 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.79 cm/s 12:14:03 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.13 cm/s 12:14:03 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:14:03 02 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (163/557) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:14:03 02 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (163/557) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 12:14:03 02 Feb 2017 UTC: INFO: QC.py(180): Changed (15/557) 1:6 228:233 555:557 to QC_BAD because changed salinity implies changed optode oxygen 12:14:03 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:14:03 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 12:14:04 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 88: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.69% reduction 12:14:04 02 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.88 12:14:04 02 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.88 12:14:04 02 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:14:04 02 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:14:04 02 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:14:04 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 12:14:04 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 12:14:35 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 12:14:35 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 12:14:35 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 12:14:42 02 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:14:42 02 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:14:42 02 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 12:14:42 02 Feb 2017 UTC /home/sg626/p6260088.log /home/sg626/p6260088.eng /home/sg626/p6260088.asc /home/sg626/p6260088.pro /home/sg626/p6260088.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 12:14:42 02 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:14:42 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:14:42 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:14:42 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:14:42 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:14:42 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:14:42 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:14:42 02 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:14:42 02 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:14:42 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:14:42 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:14:42 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:14:42 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:14:42 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:14:42 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:14:42 02 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:14:42 02 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 12:14:42 02 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 12:14:42 02 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 12:14:42 02 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 12:14:42 02 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:14:42 02 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:14:42 02 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:14:42 02 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 12:14:42 02 Feb 2017 UTC 15:18:30 02 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 27342 15:18:30 02 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 15:21:02 02 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 27612 15:21:02 02 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 15:21:02 02 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 15:21:02 02 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 15:21:02 02 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 15:21:02 02 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170202052101 ] 15:21:02 02 Feb 2017 UTC: INFO: Base.py(1333): PID:27620 15:21:02 02 Feb 2017 UTC: INFO: Base.py(1375): Started processing 15:21:02 02 Feb 2017 UTC 15:21:02 02 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 15:21:02 02 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 15:21:02 02 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 15:21:02 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:21:02 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:89 calls_made:1 call_cycle:0 15:21:02 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:21:02 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:89 calls_made:1 call_cycle:0 15:21:02 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:21:02 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:89 calls_made:1 call_cycle:0 15:21:02 02 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:89 calls_made:1 call_cycle:0 2249.9430 -15805.5480 02/02/17 15:16:32 UTC) to sdrifter@soest.hawaii.edu 15:21:02 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:89 calls_made:1 call_cycle:0 15:21:02 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:21:02 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:89 calls_made:1 call_cycle:0 15:21:02 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:21:02 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:89 calls_made:1 call_cycle:0 15:21:02 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:21:02 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:89 calls_made:1 call_cycle:0 15:21:02 02 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:21:02 02 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 15:21:04 02 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 15:21:04 02 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 15:21:04 02 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 15:21:04 02 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 15:21:04 02 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 15:21:04 02 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 15:21:05 02 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0089lz 15:21:05 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0089lz.x00 15:21:05 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0089lz.x01 15:21:05 02 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0089lz.r in process_file_group 15:21:05 02 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260089.log 15:21:05 02 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 15:21:05 02 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0089dz 15:21:05 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0089dz.x00 15:21:05 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0089dz.x01 15:21:05 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0089dz.x02 15:21:05 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0089dz.x03 15:21:05 02 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0089dz.r in process_file_group 15:21:05 02 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [89] 15:21:05 02 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [89] 15:21:05 02 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260089) for profiles 15:21:05 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 15:21:05 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/567) 567 to QC_BAD because CT out of water 15:21:05 02 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.049m) 15:21:05 02 Feb 2017 UTC: INFO: QC.py(365): Changed (4/567) 2 3 202 231 to QC_PROBABLY_BAD because raw temperature spikes 15:21:05 02 Feb 2017 UTC: INFO: QC.py(377): Changed (1/567) 567 to QC_BAD because raw salinity below bound 15:21:05 02 Feb 2017 UTC: INFO: QC.py(408): Changed (1/567) 202 to QC_PROBABLY_BAD because raw conductivity spikes 15:21:05 02 Feb 2017 UTC: INFO: QC.py(180): Changed (4/567) 2 3 202 231 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 15:21:05 02 Feb 2017 UTC: INFO: QC.py(365): Changed (4/567) 2 3 202 231 to QC_INTERPOLATED because temperature spikes 15:21:05 02 Feb 2017 UTC: INFO: QC.py(377): Changed (1/567) 567 to QC_BAD because salinity below bound 15:21:05 02 Feb 2017 UTC: INFO: QC.py(408): Changed (1/567) 202 to QC_INTERPOLATED because conductivity spikes 15:21:05 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/567) 229:234 to QC_BAD because slow apogee CT flow 15:21:05 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/567) 1:6 to QC_BAD because prior to dive start 15:21:05 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/567) 565 566 to QC_BAD because end of climb 15:21:05 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/567) 1:6 229:234 565:567 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 15:21:05 02 Feb 2017 UTC: INFO: QC.py(180): Changed (15/567) 1:6 229:234 565:567 to QC_BAD because changed corrected salin implies changed speed 15:21:06 02 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 15:21:06 02 Feb 2017 UTC: INFO: QC.py(180): Changed (1/567) 202 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 15:21:06 02 Feb 2017 UTC: INFO: QC.py(180): Changed (1/567) 202 to QC_INTERPOLATED because changed corrected temp implies changed speed 15:21:06 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.76 cm/s 15:21:06 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.48 cm/s 15:21:06 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 15:21:06 02 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/567) 123:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 15:21:06 02 Feb 2017 UTC: INFO: QC.py(180): Changed (3/567) 2 3 231 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 15:21:06 02 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/567) 123:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 15:21:06 02 Feb 2017 UTC: INFO: QC.py(180): Changed (3/567) 2 3 231 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 15:21:06 02 Feb 2017 UTC: INFO: QC.py(180): Changed (15/567) 1:6 229:234 565:567 to QC_BAD because changed salinity implies changed optode oxygen 15:21:06 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 15:21:06 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 15:21:06 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 89: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.65% reduction 15:21:06 02 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.89 15:21:06 02 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.89 15:21:06 02 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 15:21:06 02 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 15:21:06 02 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 15:21:06 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 15:21:06 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 15:21:38 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 15:21:39 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 15:21:39 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 15:21:45 02 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 15:21:45 02 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 15:21:45 02 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 15:21:45 02 Feb 2017 UTC /home/sg626/p6260089.log /home/sg626/p6260089.eng /home/sg626/p6260089.asc /home/sg626/p6260089.pro /home/sg626/p6260089.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 15:21:45 02 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 15:21:45 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:21:45 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:21:45 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:21:45 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:21:45 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:21:45 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:21:45 02 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:21:45 02 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 15:21:45 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:21:45 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:21:45 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:21:45 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:21:45 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:21:45 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:21:45 02 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:21:45 02 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 15:21:45 02 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 15:21:45 02 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 15:21:45 02 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 15:21:45 02 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 15:21:45 02 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 15:21:45 02 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 15:21:45 02 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 15:21:45 02 Feb 2017 UTC 18:24:41 02 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 1355 18:24:41 02 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 18:27:08 02 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 1485 18:27:08 02 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:27:08 02 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 18:27:08 02 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 18:27:08 02 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:27:08 02 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170202082708 ] 18:27:08 02 Feb 2017 UTC: INFO: Base.py(1333): PID:1493 18:27:08 02 Feb 2017 UTC: INFO: Base.py(1375): Started processing 18:27:08 02 Feb 2017 UTC 18:27:08 02 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 18:27:09 02 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 18:27:09 02 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:27:09 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:27:09 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:90 calls_made:1 call_cycle:0 18:27:09 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:27:09 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:90 calls_made:1 call_cycle:0 18:27:09 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:27:09 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:90 calls_made:1 call_cycle:0 18:27:09 02 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:90 calls_made:1 call_cycle:0 2249.7730 -15805.4460 02/02/17 18:22:48 UTC) to sdrifter@soest.hawaii.edu 18:27:09 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:90 calls_made:1 call_cycle:0 18:27:09 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:27:09 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:90 calls_made:1 call_cycle:0 18:27:09 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:27:09 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:90 calls_made:1 call_cycle:0 18:27:09 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:27:09 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:90 calls_made:1 call_cycle:0 18:27:09 02 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:27:09 02 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:27:11 02 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:27:11 02 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:27:11 02 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 18:27:11 02 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:27:11 02 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:27:11 02 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 18:27:11 02 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0090lz 18:27:11 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0090lz.x00 18:27:11 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0090lz.x01 18:27:11 02 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0090lz.r in process_file_group 18:27:11 02 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260090.log 18:27:11 02 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 18:27:11 02 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0090dz 18:27:11 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0090dz.x00 18:27:11 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0090dz.x01 18:27:11 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0090dz.x02 18:27:11 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0090dz.x03 18:27:11 02 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0090dz.r in process_file_group 18:27:12 02 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [90] 18:27:12 02 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [90] 18:27:12 02 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260090) for profiles 18:27:12 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 18:27:12 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/569) 568 569 to QC_BAD because CT out of water 18:27:12 02 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.080m) 18:27:12 02 Feb 2017 UTC: INFO: QC.py(365): Changed (2/569) 2 3 to QC_PROBABLY_BAD because raw temperature spikes 18:27:12 02 Feb 2017 UTC: INFO: QC.py(377): Changed (1/569) 568 to QC_BAD because raw salinity below bound 18:27:12 02 Feb 2017 UTC: INFO: QC.py(408): Changed (1/569) 189 to QC_PROBABLY_BAD because raw conductivity spikes 18:27:12 02 Feb 2017 UTC: INFO: QC.py(180): Changed (2/569) 2 3 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 18:27:12 02 Feb 2017 UTC: INFO: QC.py(180): Changed (1/569) 189 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 18:27:12 02 Feb 2017 UTC: INFO: QC.py(180): Changed (1/569) 569 to QC_BAD because changed raw cond implies changed raw salinity 18:27:12 02 Feb 2017 UTC: INFO: QC.py(365): Changed (2/569) 2 3 to QC_INTERPOLATED because temperature spikes 18:27:12 02 Feb 2017 UTC: INFO: QC.py(377): Changed (1/569) 568 to QC_BAD because salinity below bound 18:27:12 02 Feb 2017 UTC: INFO: QC.py(408): Changed (1/569) 189 to QC_INTERPOLATED because conductivity spikes 18:27:12 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/569) 224:229 to QC_BAD because slow apogee CT flow 18:27:12 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/569) 1:6 to QC_BAD because prior to dive start 18:27:12 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/569) 567 to QC_BAD because end of climb 18:27:12 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/569) 1:6 224:229 567:569 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 18:27:12 02 Feb 2017 UTC: INFO: QC.py(180): Changed (15/569) 1:6 224:229 567:569 to QC_BAD because changed corrected salin implies changed speed 18:27:12 02 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 18:27:12 02 Feb 2017 UTC: INFO: QC.py(180): Changed (1/569) 189 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 18:27:12 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.63 cm/s 18:27:12 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.41 cm/s 18:27:12 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 18:27:12 02 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/569) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 18:27:12 02 Feb 2017 UTC: INFO: QC.py(180): Changed (2/569) 2 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 18:27:12 02 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/569) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 18:27:12 02 Feb 2017 UTC: INFO: QC.py(180): Changed (2/569) 2 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 18:27:12 02 Feb 2017 UTC: INFO: QC.py(180): Changed (15/569) 1:6 224:229 567:569 to QC_BAD because changed salinity implies changed optode oxygen 18:27:12 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 18:27:12 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 18:27:13 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 90: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.64% reduction 18:27:13 02 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.90 18:27:13 02 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.90 18:27:13 02 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:27:13 02 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:27:13 02 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:27:13 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 18:27:13 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 18:27:45 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 18:27:45 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 18:27:45 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 18:27:52 02 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:27:52 02 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:27:52 02 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:27:52 02 Feb 2017 UTC /home/sg626/p6260090.log /home/sg626/p6260090.eng /home/sg626/p6260090.asc /home/sg626/p6260090.pro /home/sg626/p6260090.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 18:27:52 02 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:27:52 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:27:52 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:27:52 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:27:52 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:27:52 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:27:52 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:27:52 02 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:27:52 02 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:27:52 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:27:52 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:27:52 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:27:52 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:27:52 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:27:52 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:27:52 02 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:27:52 02 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 18:27:52 02 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 18:27:52 02 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 18:27:52 02 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 18:27:52 02 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:27:52 02 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:27:52 02 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:27:52 02 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 18:27:52 02 Feb 2017 UTC 21:30:07 02 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 7053 21:30:07 02 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:32:26 02 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 7177 21:32:26 02 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:32:26 02 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:32:26 02 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:32:26 02 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:32:26 02 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170202113225 ] 21:32:26 02 Feb 2017 UTC: INFO: Base.py(1333): PID:7185 21:32:26 02 Feb 2017 UTC: INFO: Base.py(1375): Started processing 21:32:26 02 Feb 2017 UTC 21:32:26 02 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:32:26 02 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:32:26 02 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:32:26 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:32:26 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:91 calls_made:1 call_cycle:0 21:32:26 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:32:26 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:91 calls_made:1 call_cycle:0 21:32:26 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:32:26 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:91 calls_made:1 call_cycle:0 21:32:26 02 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:91 calls_made:1 call_cycle:0 2249.7670 -15805.0960 02/02/17 21:28:14 UTC) to sdrifter@soest.hawaii.edu 21:32:26 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:91 calls_made:1 call_cycle:0 21:32:26 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:32:26 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:91 calls_made:1 call_cycle:0 21:32:26 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:32:26 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:91 calls_made:1 call_cycle:0 21:32:26 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:32:26 02 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:91 calls_made:1 call_cycle:0 21:32:26 02 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:32:26 02 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:32:28 02 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:32:28 02 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:32:28 02 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:32:28 02 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:32:28 02 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:32:28 02 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:32:29 02 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0091lz 21:32:29 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0091lz.x00 21:32:29 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0091lz.x01 21:32:29 02 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0091lz.r in process_file_group 21:32:29 02 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260091.log 21:32:29 02 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:32:29 02 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0091dz 21:32:29 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0091dz.x00 21:32:29 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0091dz.x01 21:32:29 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0091dz.x02 21:32:29 02 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0091dz.x03 21:32:29 02 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0091dz.r in process_file_group 21:32:29 02 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [91] 21:32:29 02 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [91] 21:32:29 02 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260091) for profiles 21:32:29 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:32:29 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/574) 573 574 to QC_BAD because CT out of water 21:32:29 02 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.035m) 21:32:29 02 Feb 2017 UTC: INFO: QC.py(365): Changed (4/574) 3 221 246 573 to QC_PROBABLY_BAD because raw temperature spikes 21:32:29 02 Feb 2017 UTC: INFO: QC.py(408): Changed (1/574) 246 to QC_PROBABLY_BAD because raw conductivity spikes 21:32:29 02 Feb 2017 UTC: INFO: QC.py(180): Changed (4/574) 3 221 246 573 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:32:29 02 Feb 2017 UTC: INFO: QC.py(180): Changed (2/574) 573 574 to QC_BAD because changed raw cond implies changed raw salinity 21:32:29 02 Feb 2017 UTC: INFO: QC.py(365): Changed (4/574) 3 221 246 573 to QC_INTERPOLATED because temperature spikes 21:32:29 02 Feb 2017 UTC: INFO: QC.py(408): Changed (1/574) 246 to QC_INTERPOLATED because conductivity spikes 21:32:29 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/574) 219:224 to QC_BAD because slow apogee CT flow 21:32:29 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/574) 1:6 to QC_BAD because prior to dive start 21:32:29 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/574) 1:6 219:224 573 574 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:32:29 02 Feb 2017 UTC: INFO: QC.py(180): Changed (14/574) 1:6 219:224 573 574 to QC_BAD because changed corrected salin implies changed speed 21:32:30 02 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:32:30 02 Feb 2017 UTC: INFO: QC.py(180): Changed (1/574) 246 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 21:32:30 02 Feb 2017 UTC: INFO: QC.py(180): Changed (1/574) 246 to QC_INTERPOLATED because changed corrected temp implies changed speed 21:32:30 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.60 cm/s 21:32:30 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.17 cm/s 21:32:30 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:32:30 02 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (158/574) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:32:30 02 Feb 2017 UTC: INFO: QC.py(180): Changed (4/574) 3 221 246 573 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:32:30 02 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (158/574) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:32:30 02 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/574) 573 to QC_BAD because bad aa4330 oyxgen 21:32:30 02 Feb 2017 UTC: INFO: QC.py(180): Changed (3/574) 3 221 246 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:32:30 02 Feb 2017 UTC: INFO: QC.py(180): Changed (13/574) 1:6 219:224 574 to QC_BAD because changed salinity implies changed optode oxygen 21:32:30 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:32:30 02 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:32:30 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 91: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.44% reduction 21:32:30 02 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.91 21:32:30 02 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:32:30 02 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:32:30 02 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:32:30 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:32:30 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 21:33:03 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 21:33:03 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 21:33:03 02 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 21:33:10 02 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:33:10 02 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:33:10 02 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:33:10 02 Feb 2017 UTC /home/sg626/p6260091.log /home/sg626/p6260091.eng /home/sg626/p6260091.asc /home/sg626/p6260091.pro /home/sg626/p6260091.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 21:33:10 02 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:33:10 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:33:10 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:33:10 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:33:10 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:33:10 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:33:10 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:33:10 02 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:33:10 02 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:33:10 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:33:10 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:33:10 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:33:10 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:33:10 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:33:10 02 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:33:10 02 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:33:10 02 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:33:10 02 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:33:10 02 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:33:10 02 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:33:10 02 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:33:10 02 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:33:10 02 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:33:10 02 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 21:33:10 02 Feb 2017 UTC 00:35:19 03 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 12282 00:35:19 03 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:38:00 03 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 12407 00:38:00 03 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:38:00 03 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:38:00 03 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:38:00 03 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:38:00 03 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170202143759 ] 00:38:00 03 Feb 2017 UTC: INFO: Base.py(1333): PID:12415 00:38:00 03 Feb 2017 UTC: INFO: Base.py(1375): Started processing 00:38:00 03 Feb 2017 UTC 00:38:00 03 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:38:00 03 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:38:00 03 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:38:00 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:38:00 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:92 calls_made:1 call_cycle:0 00:38:00 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:38:00 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:92 calls_made:1 call_cycle:0 00:38:00 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:38:00 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:92 calls_made:1 call_cycle:0 00:38:00 03 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:92 calls_made:1 call_cycle:0 2249.6950 -15804.6040 02/03/17 00:33:18 UTC) to sdrifter@soest.hawaii.edu 00:38:00 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:92 calls_made:1 call_cycle:0 00:38:00 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:38:00 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:92 calls_made:1 call_cycle:0 00:38:00 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:38:00 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:92 calls_made:1 call_cycle:0 00:38:00 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:38:00 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:92 calls_made:1 call_cycle:0 00:38:00 03 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:38:00 03 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:38:02 03 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:38:02 03 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:38:02 03 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:38:02 03 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:38:02 03 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:38:02 03 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:38:02 03 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0092lz 00:38:02 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0092lz.x00 00:38:02 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0092lz.x01 00:38:02 03 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0092lz.r in process_file_group 00:38:02 03 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260092.log 00:38:02 03 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:38:02 03 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0092dz 00:38:02 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0092dz.x00 00:38:02 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0092dz.x01 00:38:02 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0092dz.x02 00:38:02 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0092dz.x03 00:38:02 03 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0092dz.r in process_file_group 00:38:03 03 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [92] 00:38:03 03 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [92] 00:38:03 03 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260092) for profiles 00:38:03 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 00:38:03 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/559) 558 559 to QC_BAD because CT out of water 00:38:03 03 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.124m) 00:38:03 03 Feb 2017 UTC: INFO: QC.py(365): Changed (8/559) 3 4 236 250:253 257 to QC_PROBABLY_BAD because raw temperature spikes 00:38:03 03 Feb 2017 UTC: INFO: QC.py(377): Changed (1/559) 559 to QC_BAD because raw salinity below bound 00:38:03 03 Feb 2017 UTC: INFO: QC.py(408): Changed (7/559) 4 203 214 250:252 257 to QC_PROBABLY_BAD because raw conductivity spikes 00:38:03 03 Feb 2017 UTC: INFO: QC.py(180): Changed (8/559) 3 4 236 250:253 257 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:38:03 03 Feb 2017 UTC: INFO: QC.py(180): Changed (2/559) 203 214 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 00:38:03 03 Feb 2017 UTC: INFO: QC.py(180): Changed (1/559) 558 to QC_BAD because changed raw cond implies changed raw salinity 00:38:03 03 Feb 2017 UTC: INFO: QC.py(365): Changed (8/559) 3 4 236 250:253 257 to QC_INTERPOLATED because temperature spikes 00:38:03 03 Feb 2017 UTC: INFO: QC.py(377): Changed (1/559) 559 to QC_BAD because salinity below bound 00:38:03 03 Feb 2017 UTC: INFO: QC.py(408): Changed (7/559) 4 203 214 250:252 257 to QC_INTERPOLATED because conductivity spikes 00:38:03 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/559) 234:239 to QC_BAD because slow apogee CT flow 00:38:03 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/559) 1:6 to QC_BAD because prior to dive start 00:38:03 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/559) 1:6 234:239 558 559 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:38:03 03 Feb 2017 UTC: INFO: QC.py(180): Changed (14/559) 1:6 234:239 558 559 to QC_BAD because changed corrected salin implies changed speed 00:38:04 03 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:38:04 03 Feb 2017 UTC: INFO: QC.py(180): Changed (5/559) 250:253 257 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 00:38:04 03 Feb 2017 UTC: INFO: QC.py(180): Changed (2/559) 203 214 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 00:38:04 03 Feb 2017 UTC: INFO: QC.py(180): Changed (5/559) 250:253 257 to QC_INTERPOLATED because changed corrected temp implies changed speed 00:38:04 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.55 cm/s 00:38:04 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.28 cm/s 00:38:04 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:38:04 03 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/559) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:38:04 03 Feb 2017 UTC: INFO: QC.py(180): Changed (4/559) 3 4 236 251 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:38:04 03 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/559) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 00:38:04 03 Feb 2017 UTC: INFO: QC.py(180): Changed (4/559) 3 4 236 251 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:38:04 03 Feb 2017 UTC: INFO: QC.py(180): Changed (14/559) 1:6 234:239 558 559 to QC_BAD because changed salinity implies changed optode oxygen 00:38:04 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:38:04 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 00:38:04 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 92: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.50% reduction 00:38:04 03 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.92 00:38:04 03 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:38:04 03 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:38:04 03 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:38:04 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 00:38:04 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 00:38:38 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 00:38:38 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 00:38:38 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 00:38:45 03 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:38:45 03 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:38:45 03 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:38:45 03 Feb 2017 UTC /home/sg626/p6260092.log /home/sg626/p6260092.eng /home/sg626/p6260092.asc /home/sg626/p6260092.pro /home/sg626/p6260092.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 00:38:45 03 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:38:45 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:38:45 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:38:45 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:38:45 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:38:45 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:38:45 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:38:45 03 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:38:45 03 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:38:45 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:38:45 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:38:45 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:38:45 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:38:45 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:38:45 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:38:45 03 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:38:45 03 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:38:45 03 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:38:45 03 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:38:45 03 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:38:45 03 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:38:45 03 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:38:45 03 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:38:45 03 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 00:38:45 03 Feb 2017 UTC 03:47:11 03 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 18378 03:47:11 03 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:49:46 03 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 18506 03:49:46 03 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:49:46 03 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:49:46 03 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:49:46 03 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:49:46 03 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170202174945 ] 03:49:46 03 Feb 2017 UTC: INFO: Base.py(1333): PID:18513 03:49:46 03 Feb 2017 UTC: INFO: Base.py(1375): Started processing 03:49:46 03 Feb 2017 UTC 03:49:46 03 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:49:46 03 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:49:46 03 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:49:46 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:49:46 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:93 calls_made:2 call_cycle:0 03:49:46 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:49:46 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:93 calls_made:2 call_cycle:0 03:49:46 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:49:46 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:93 calls_made:2 call_cycle:0 03:49:46 03 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:93 calls_made:2 call_cycle:0 2249.5460 -15804.1610 02/03/17 03:43:37 UTC) to sdrifter@soest.hawaii.edu 03:49:47 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:93 calls_made:2 call_cycle:0 03:49:47 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:49:47 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:93 calls_made:2 call_cycle:0 03:49:47 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:49:47 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:93 calls_made:2 call_cycle:0 03:49:47 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:49:47 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:93 calls_made:2 call_cycle:0 03:49:47 03 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:49:47 03 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:49:48 03 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:49:49 03 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:49:49 03 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:49:49 03 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:49:49 03 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:49:49 03 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:49:49 03 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0093lz 03:49:49 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0093lz.x00 03:49:49 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0093lz.x01 03:49:49 03 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0093lz.r in process_file_group 03:49:49 03 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260093.log 03:49:49 03 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:49:49 03 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0093dz 03:49:49 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0093dz.x00 03:49:49 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0093dz.x01 03:49:49 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0093dz.x02 03:49:49 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0093dz.x03 03:49:49 03 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0093dz.r in process_file_group 03:49:49 03 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [93] 03:49:49 03 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [93] 03:49:49 03 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260093) for profiles 03:49:49 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 03:49:49 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/579) 579 to QC_BAD because CT out of water 03:49:49 03 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.103m) 03:49:49 03 Feb 2017 UTC: INFO: QC.py(365): Changed (6/579) 2 3 201 255 256 258 to QC_PROBABLY_BAD because raw temperature spikes 03:49:49 03 Feb 2017 UTC: INFO: QC.py(408): Changed (5/579) 2 201 255 256 258 to QC_PROBABLY_BAD because raw conductivity spikes 03:49:49 03 Feb 2017 UTC: INFO: QC.py(180): Changed (6/579) 2 3 201 255 256 258 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 03:49:49 03 Feb 2017 UTC: INFO: QC.py(180): Changed (1/579) 579 to QC_BAD because changed raw cond implies changed raw salinity 03:49:49 03 Feb 2017 UTC: INFO: QC.py(365): Changed (6/579) 2 3 201 255 256 258 to QC_INTERPOLATED because temperature spikes 03:49:49 03 Feb 2017 UTC: INFO: QC.py(408): Changed (5/579) 2 201 255 256 258 to QC_INTERPOLATED because conductivity spikes 03:49:49 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/579) 233:238 to QC_BAD because slow apogee CT flow 03:49:49 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/579) 1:6 to QC_BAD because prior to dive start 03:49:50 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/579) 1:6 233:238 579 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:49:50 03 Feb 2017 UTC: INFO: QC.py(180): Changed (13/579) 1:6 233:238 579 to QC_BAD because changed corrected salin implies changed speed 03:49:50 03 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 03:49:50 03 Feb 2017 UTC: INFO: QC.py(180): Changed (4/579) 201 255 256 258 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 03:49:50 03 Feb 2017 UTC: INFO: QC.py(180): Changed (4/579) 201 255 256 258 to QC_INTERPOLATED because changed corrected temp implies changed speed 03:49:50 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.15 cm/s 03:49:50 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.58 cm/s 03:49:50 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:49:50 03 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (163/579) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:49:50 03 Feb 2017 UTC: INFO: QC.py(180): Changed (4/579) 2 3 201 256 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:49:50 03 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (163/579) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 03:49:50 03 Feb 2017 UTC: INFO: QC.py(180): Changed (4/579) 2 3 201 256 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 03:49:50 03 Feb 2017 UTC: INFO: QC.py(180): Changed (13/579) 1:6 233:238 579 to QC_BAD because changed salinity implies changed optode oxygen 03:49:50 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:49:50 03 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:49:50 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 03:49:50 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 93: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.25% reduction 03:49:51 03 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.93 03:49:51 03 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:49:51 03 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:49:51 03 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:49:51 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 03:49:51 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 03:50:25 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 03:50:25 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 03:50:25 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 03:50:32 03 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:50:32 03 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:50:32 03 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:50:32 03 Feb 2017 UTC /home/sg626/p6260093.log /home/sg626/p6260093.eng /home/sg626/p6260093.asc /home/sg626/p6260093.pro /home/sg626/p6260093.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 03:50:32 03 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:50:32 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:50:32 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:50:32 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:50:32 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:50:32 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:50:32 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:50:32 03 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:50:32 03 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:50:32 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:50:32 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:50:32 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:50:32 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:50:32 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:50:32 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:50:32 03 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:50:32 03 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:50:32 03 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:50:32 03 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:50:32 03 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:50:32 03 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:50:32 03 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:50:32 03 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:50:32 03 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 03:50:32 03 Feb 2017 UTC 06:48:32 03 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 23640 06:48:32 03 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:50:54 03 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 23840 06:50:54 03 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:50:54 03 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 06:50:54 03 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 06:50:54 03 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:50:54 03 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170202205053 ] 06:50:54 03 Feb 2017 UTC: INFO: Base.py(1333): PID:23848 06:50:54 03 Feb 2017 UTC: INFO: Base.py(1375): Started processing 06:50:54 03 Feb 2017 UTC 06:50:54 03 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 06:50:54 03 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 06:50:54 03 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:50:54 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:50:54 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:94 calls_made:1 call_cycle:0 06:50:54 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:50:54 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:94 calls_made:1 call_cycle:0 06:50:54 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:50:54 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:94 calls_made:1 call_cycle:0 06:50:54 03 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:94 calls_made:1 call_cycle:0 2249.9590 -15803.6430 02/03/17 06:46:18 UTC) to sdrifter@soest.hawaii.edu 06:50:54 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:94 calls_made:1 call_cycle:0 06:50:54 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:50:54 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:94 calls_made:1 call_cycle:0 06:50:54 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:50:54 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:94 calls_made:1 call_cycle:0 06:50:54 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:50:54 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:94 calls_made:1 call_cycle:0 06:50:54 03 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:50:54 03 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:50:56 03 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:50:56 03 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:50:56 03 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 06:50:56 03 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:50:56 03 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:50:56 03 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 06:50:56 03 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0094lz 06:50:56 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0094lz.x00 06:50:56 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0094lz.x01 06:50:56 03 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0094lz.r in process_file_group 06:50:56 03 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260094.log 06:50:56 03 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 06:50:56 03 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0094dz 06:50:56 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0094dz.x00 06:50:56 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0094dz.x01 06:50:56 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0094dz.x02 06:50:56 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0094dz.x03 06:50:56 03 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0094dz.r in process_file_group 06:50:57 03 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [94] 06:50:57 03 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [94] 06:50:57 03 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260094) for profiles 06:50:57 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 06:50:57 03 Feb 2017 UTC: INFO: QC.py(365): Changed (8/542) 2:4 182 189 190 192 234 to QC_PROBABLY_BAD because raw temperature spikes 06:50:57 03 Feb 2017 UTC: INFO: QC.py(408): Changed (3/542) 182 189 192 to QC_PROBABLY_BAD because raw conductivity spikes 06:50:57 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/542) 542 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 06:50:57 03 Feb 2017 UTC: INFO: QC.py(180): Changed (8/542) 2:4 182 189 190 192 234 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 06:50:57 03 Feb 2017 UTC: INFO: QC.py(180): Changed (1/542) 542 to QC_BAD because changed raw cond implies changed raw salinity 06:50:57 03 Feb 2017 UTC: INFO: QC.py(365): Changed (8/542) 2:4 182 189 190 192 234 to QC_INTERPOLATED because temperature spikes 06:50:57 03 Feb 2017 UTC: INFO: QC.py(408): Changed (3/542) 182 189 192 to QC_INTERPOLATED because conductivity spikes 06:50:57 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/542) 542 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 06:50:57 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/542) 214:219 to QC_BAD because slow apogee CT flow 06:50:57 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/542) 1:6 to QC_BAD because prior to dive start 06:50:57 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/542) 541 to QC_BAD because end of climb 06:50:57 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/542) 1:6 214:219 541 542 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 06:50:57 03 Feb 2017 UTC: INFO: QC.py(180): Changed (14/542) 1:6 214:219 541 542 to QC_BAD because changed corrected salin implies changed speed 06:50:58 03 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 06:50:58 03 Feb 2017 UTC: INFO: QC.py(180): Changed (5/542) 182 189 190 192 234 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 06:50:58 03 Feb 2017 UTC: INFO: QC.py(180): Changed (5/542) 182 189 190 192 234 to QC_INTERPOLATED because changed corrected temp implies changed speed 06:50:58 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.96 cm/s 06:50:58 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.31 cm/s 06:50:58 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 06:50:58 03 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (157/542) 113:115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 06:50:58 03 Feb 2017 UTC: INFO: QC.py(180): Changed (3/542) 2:4 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 06:50:58 03 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (157/542) 113:115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 06:50:58 03 Feb 2017 UTC: INFO: QC.py(180): Changed (3/542) 2:4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 06:50:58 03 Feb 2017 UTC: INFO: QC.py(180): Changed (14/542) 1:6 214:219 541 542 to QC_BAD because changed salinity implies changed optode oxygen 06:50:58 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 06:50:58 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 06:50:58 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 94: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.58% reduction 06:50:58 03 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.94 06:50:58 03 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:50:58 03 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:50:58 03 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:50:58 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 06:50:58 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 06:51:33 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 06:51:33 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 06:51:33 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 06:51:40 03 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:51:40 03 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:51:40 03 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 06:51:40 03 Feb 2017 UTC /home/sg626/p6260094.log /home/sg626/p6260094.eng /home/sg626/p6260094.asc /home/sg626/p6260094.pro /home/sg626/p6260094.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 06:51:40 03 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:51:40 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:51:40 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:51:40 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:51:40 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:51:40 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:51:40 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:51:40 03 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:51:40 03 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:51:40 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:51:40 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:51:40 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:51:40 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:51:40 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:51:40 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:51:40 03 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:51:40 03 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 06:51:40 03 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 06:51:40 03 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 06:51:40 03 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 06:51:40 03 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:51:40 03 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:51:40 03 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:51:40 03 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 06:51:40 03 Feb 2017 UTC 09:52:25 03 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 29327 09:52:25 03 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:54:44 03 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 29614 09:54:44 03 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:54:44 03 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:54:44 03 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:54:44 03 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:54:44 03 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170202235443 ] 09:54:44 03 Feb 2017 UTC: INFO: Base.py(1333): PID:29621 09:54:44 03 Feb 2017 UTC: INFO: Base.py(1375): Started processing 09:54:44 03 Feb 2017 UTC 09:54:44 03 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:54:44 03 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:54:44 03 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:54:44 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:54:44 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:95 calls_made:1 call_cycle:0 09:54:44 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:54:44 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:95 calls_made:1 call_cycle:0 09:54:44 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:54:44 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:95 calls_made:1 call_cycle:0 09:54:44 03 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:95 calls_made:1 call_cycle:0 2249.9070 -15803.8310 02/03/17 09:50:31 UTC) to sdrifter@soest.hawaii.edu 09:54:44 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:95 calls_made:1 call_cycle:0 09:54:44 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:54:44 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:95 calls_made:1 call_cycle:0 09:54:44 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:54:44 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:95 calls_made:1 call_cycle:0 09:54:44 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:54:44 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:95 calls_made:1 call_cycle:0 09:54:44 03 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:54:44 03 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:54:46 03 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:54:47 03 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:54:47 03 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:54:47 03 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:54:47 03 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:54:47 03 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:54:47 03 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0095lz 09:54:47 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0095lz.x00 09:54:47 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0095lz.x01 09:54:47 03 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0095lz.r in process_file_group 09:54:47 03 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260095.log 09:54:47 03 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:54:47 03 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0095dz 09:54:47 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0095dz.x00 09:54:47 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0095dz.x01 09:54:47 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0095dz.x02 09:54:47 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0095dz.x03 09:54:47 03 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0095dz.r in process_file_group 09:54:47 03 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [95] 09:54:47 03 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [95] 09:54:47 03 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260095) for profiles 09:54:47 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 09:54:47 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/559) 558 559 to QC_BAD because CT out of water 09:54:47 03 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.126m) 09:54:47 03 Feb 2017 UTC: INFO: QC.py(365): Changed (5/559) 198 205 206 222 558 to QC_PROBABLY_BAD because raw temperature spikes 09:54:47 03 Feb 2017 UTC: INFO: QC.py(377): Changed (1/559) 558 to QC_BAD because raw salinity below bound 09:54:47 03 Feb 2017 UTC: INFO: QC.py(408): Changed (2/559) 202 205 to QC_PROBABLY_BAD because raw conductivity spikes 09:54:47 03 Feb 2017 UTC: INFO: QC.py(180): Changed (4/559) 198 205 206 222 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 09:54:47 03 Feb 2017 UTC: INFO: QC.py(180): Changed (1/559) 202 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 09:54:47 03 Feb 2017 UTC: INFO: QC.py(180): Changed (1/559) 559 to QC_BAD because changed raw cond implies changed raw salinity 09:54:47 03 Feb 2017 UTC: INFO: QC.py(365): Changed (5/559) 198 205 206 222 558 to QC_INTERPOLATED because temperature spikes 09:54:47 03 Feb 2017 UTC: INFO: QC.py(377): Changed (1/559) 558 to QC_BAD because salinity below bound 09:54:47 03 Feb 2017 UTC: INFO: QC.py(408): Changed (2/559) 202 205 to QC_INTERPOLATED because conductivity spikes 09:54:47 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/559) 220:225 to QC_BAD because slow apogee CT flow 09:54:47 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/559) 1:6 to QC_BAD because prior to dive start 09:54:47 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/559) 557 to QC_BAD because end of climb 09:54:47 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/559) 1:6 220:225 557:559 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:54:47 03 Feb 2017 UTC: INFO: QC.py(180): Changed (15/559) 1:6 220:225 557:559 to QC_BAD because changed corrected salin implies changed speed 09:54:48 03 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:54:48 03 Feb 2017 UTC: INFO: QC.py(180): Changed (3/559) 198 205 206 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 09:54:48 03 Feb 2017 UTC: INFO: QC.py(180): Changed (1/559) 202 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 09:54:48 03 Feb 2017 UTC: INFO: QC.py(180): Changed (3/559) 198 205 206 to QC_INTERPOLATED because changed corrected temp implies changed speed 09:54:48 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.08 cm/s 09:54:48 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.43 cm/s 09:54:48 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:54:48 03 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/559) 114 115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:54:48 03 Feb 2017 UTC: INFO: QC.py(180): Changed (2/559) 206 558 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:54:48 03 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/559) 114 115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 09:54:48 03 Feb 2017 UTC: INFO: QC.py(180): Changed (2/559) 206 558 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:54:48 03 Feb 2017 UTC: INFO: QC.py(180): Changed (15/559) 1:6 220:225 557:559 to QC_BAD because changed salinity implies changed optode oxygen 09:54:48 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:54:48 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 09:54:48 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 95: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.68% reduction 09:54:48 03 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.95 09:54:48 03 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:54:48 03 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:54:48 03 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:54:48 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 09:54:48 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 09:55:24 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 09:55:24 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 09:55:24 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 09:55:31 03 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:55:31 03 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:55:31 03 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:55:31 03 Feb 2017 UTC /home/sg626/p6260095.log /home/sg626/p6260095.eng /home/sg626/p6260095.asc /home/sg626/p6260095.pro /home/sg626/p6260095.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 09:55:31 03 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:55:31 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:55:31 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:55:31 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:55:31 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:55:31 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:55:31 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:55:31 03 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:55:31 03 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:55:31 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:55:31 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:55:31 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:55:31 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:55:31 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:55:31 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:55:31 03 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:55:31 03 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:55:31 03 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:55:31 03 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:55:31 03 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:55:31 03 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:55:31 03 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:55:31 03 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:55:31 03 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 09:55:31 03 Feb 2017 UTC 12:56:56 03 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 2386 12:56:56 03 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:59:14 03 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 2502 12:59:14 03 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:59:14 03 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:59:14 03 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:59:14 03 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:59:14 03 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170203025913 ] 12:59:14 03 Feb 2017 UTC: INFO: Base.py(1333): PID:2510 12:59:14 03 Feb 2017 UTC: INFO: Base.py(1375): Started processing 12:59:14 03 Feb 2017 UTC 12:59:14 03 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:59:14 03 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:59:14 03 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:59:14 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:59:14 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:96 calls_made:1 call_cycle:0 12:59:14 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:59:14 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:96 calls_made:1 call_cycle:0 12:59:14 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:59:14 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:96 calls_made:1 call_cycle:0 12:59:14 03 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:96 calls_made:1 call_cycle:0 2250.0210 -15803.5630 02/03/17 12:55:00 UTC) to sdrifter@soest.hawaii.edu 12:59:14 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:96 calls_made:1 call_cycle:0 12:59:14 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:59:14 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:96 calls_made:1 call_cycle:0 12:59:14 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:59:14 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:96 calls_made:1 call_cycle:0 12:59:14 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:59:14 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:96 calls_made:1 call_cycle:0 12:59:14 03 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:59:14 03 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:59:16 03 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:59:17 03 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:59:17 03 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:59:17 03 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:59:17 03 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:59:17 03 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:59:17 03 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0096lz 12:59:17 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0096lz.x00 12:59:17 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0096lz.x01 12:59:17 03 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0096lz.r in process_file_group 12:59:17 03 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260096.log 12:59:17 03 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:59:17 03 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0096dz 12:59:17 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0096dz.x00 12:59:17 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0096dz.x01 12:59:17 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0096dz.x02 12:59:17 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0096dz.x03 12:59:17 03 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0096dz.r in process_file_group 12:59:17 03 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [96] 12:59:17 03 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [96] 12:59:17 03 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260096) for profiles 12:59:17 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 12:59:17 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/567) 567 to QC_BAD because CT out of water 12:59:17 03 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.205m) 12:59:17 03 Feb 2017 UTC: INFO: QC.py(365): Changed (3/567) 203 206 245 to QC_PROBABLY_BAD because raw temperature spikes 12:59:17 03 Feb 2017 UTC: INFO: QC.py(408): Changed (3/567) 203 205 206 to QC_PROBABLY_BAD because raw conductivity spikes 12:59:17 03 Feb 2017 UTC: INFO: QC.py(180): Changed (3/567) 203 206 245 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 12:59:17 03 Feb 2017 UTC: INFO: QC.py(180): Changed (1/567) 205 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 12:59:17 03 Feb 2017 UTC: INFO: QC.py(180): Changed (1/567) 567 to QC_BAD because changed raw cond implies changed raw salinity 12:59:17 03 Feb 2017 UTC: INFO: QC.py(365): Changed (3/567) 203 206 245 to QC_INTERPOLATED because temperature spikes 12:59:17 03 Feb 2017 UTC: INFO: QC.py(408): Changed (3/567) 203 205 206 to QC_INTERPOLATED because conductivity spikes 12:59:17 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/567) 225:230 to QC_BAD because slow apogee CT flow 12:59:17 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/567) 1:6 to QC_BAD because prior to dive start 12:59:17 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/567) 566 to QC_BAD because end of climb 12:59:17 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3343): SUGGESTION: 96 interp_conductivity data_points between 119 121 % 12.3m SUSPECT unresolved strong conductivity anomaly 12:59:17 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/567) 1:6 225:230 566 567 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:59:17 03 Feb 2017 UTC: INFO: QC.py(180): Changed (14/567) 1:6 225:230 566 567 to QC_BAD because changed corrected salin implies changed speed 12:59:18 03 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:59:18 03 Feb 2017 UTC: INFO: QC.py(180): Changed (3/567) 203 206 245 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 12:59:18 03 Feb 2017 UTC: INFO: QC.py(180): Changed (1/567) 205 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 12:59:18 03 Feb 2017 UTC: INFO: QC.py(180): Changed (3/567) 203 206 245 to QC_INTERPOLATED because changed corrected temp implies changed speed 12:59:18 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.35 cm/s 12:59:18 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.35 cm/s 12:59:18 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:59:18 03 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (158/567) 119 120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:59:18 03 Feb 2017 UTC: INFO: QC.py(180): Changed (1/567) 206 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 12:59:18 03 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (158/567) 119 120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 12:59:18 03 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/567) 7 to QC_BAD because bad aa4330 oyxgen 12:59:18 03 Feb 2017 UTC: INFO: QC.py(180): Changed (1/567) 206 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 12:59:18 03 Feb 2017 UTC: INFO: QC.py(180): Changed (14/567) 1:6 225:230 566 567 to QC_BAD because changed salinity implies changed optode oxygen 12:59:18 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:59:18 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 12:59:18 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 96: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.47% reduction 12:59:18 03 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.96 12:59:18 03 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:59:18 03 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:59:18 03 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:59:19 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 12:59:19 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 12:59:54 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 12:59:54 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 12:59:54 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:00:02 03 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:00:02 03 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:00:02 03 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:00:02 03 Feb 2017 UTC /home/sg626/p6260096.log /home/sg626/p6260096.eng /home/sg626/p6260096.asc /home/sg626/p6260096.pro /home/sg626/p6260096.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:00:02 03 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:00:02 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:00:02 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:00:02 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:00:02 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:00:02 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:00:02 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:00:02 03 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:00:02 03 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:00:02 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:00:02 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:00:02 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:00:02 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:00:02 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:00:02 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:00:02 03 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:00:02 03 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:00:02 03 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:00:02 03 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:00:02 03 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:00:02 03 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:00:02 03 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:00:02 03 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:00:02 03 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 13:00:02 03 Feb 2017 UTC 16:00:24 03 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 7989 16:00:24 03 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:02:47 03 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 8212 16:02:47 03 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:02:47 03 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:02:47 03 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:02:47 03 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:02:47 03 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170203060247 ] 16:02:47 03 Feb 2017 UTC: INFO: Base.py(1333): PID:8220 16:02:47 03 Feb 2017 UTC: INFO: Base.py(1375): Started processing 16:02:47 03 Feb 2017 UTC 16:02:48 03 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:02:48 03 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:02:48 03 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:02:48 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:02:48 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:1 call_cycle:0 16:02:48 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:02:48 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:1 call_cycle:0 16:02:48 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:02:48 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:1 call_cycle:0 16:02:48 03 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:97 calls_made:1 call_cycle:0 2249.5640 -15803.3870 02/03/17 15:58:30 UTC) to sdrifter@soest.hawaii.edu 16:02:48 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:1 call_cycle:0 16:02:48 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:02:48 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:1 call_cycle:0 16:02:48 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:02:48 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:1 call_cycle:0 16:02:48 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:02:48 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:1 call_cycle:0 16:02:48 03 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:02:48 03 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:02:50 03 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:02:50 03 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:02:50 03 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:02:50 03 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:02:50 03 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:02:50 03 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:02:50 03 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0097lz 16:02:50 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0097lz.x00 16:02:50 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0097lz.x01 16:02:50 03 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0097lz.r in process_file_group 16:02:50 03 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260097.log 16:02:50 03 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:02:50 03 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0097dz 16:02:50 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0097dz.x00 16:02:50 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0097dz.x01 16:02:50 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0097dz.x02 16:02:50 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0097dz.x03 16:02:50 03 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0097dz.r in process_file_group 16:02:51 03 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [97] 16:02:51 03 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [97] 16:02:51 03 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260097) for profiles 16:02:51 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:02:51 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/553) 552 553 to QC_BAD because CT out of water 16:02:51 03 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.080m) 16:02:51 03 Feb 2017 UTC: INFO: QC.py(365): Changed (1/553) 192 to QC_PROBABLY_BAD because raw temperature spikes 16:02:51 03 Feb 2017 UTC: INFO: QC.py(408): Changed (1/553) 192 to QC_PROBABLY_BAD because raw conductivity spikes 16:02:51 03 Feb 2017 UTC: INFO: QC.py(180): Changed (1/553) 192 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:02:51 03 Feb 2017 UTC: INFO: QC.py(180): Changed (2/553) 552 553 to QC_BAD because changed raw cond implies changed raw salinity 16:02:51 03 Feb 2017 UTC: INFO: QC.py(365): Changed (1/553) 192 to QC_INTERPOLATED because temperature spikes 16:02:51 03 Feb 2017 UTC: INFO: QC.py(408): Changed (1/553) 192 to QC_INTERPOLATED because conductivity spikes 16:02:51 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/553) 218:223 to QC_BAD because slow apogee CT flow 16:02:51 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/553) 1:6 to QC_BAD because prior to dive start 16:02:51 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/553) 1:6 218:223 552 553 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:02:51 03 Feb 2017 UTC: INFO: QC.py(180): Changed (14/553) 1:6 218:223 552 553 to QC_BAD because changed corrected salin implies changed speed 16:02:52 03 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:02:52 03 Feb 2017 UTC: INFO: QC.py(180): Changed (1/553) 192 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 16:02:52 03 Feb 2017 UTC: INFO: QC.py(180): Changed (1/553) 192 to QC_INTERPOLATED because changed corrected temp implies changed speed 16:02:52 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.24 cm/s 16:02:52 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.50 cm/s 16:02:52 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:02:52 03 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (159/553) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:02:52 03 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (159/553) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:02:52 03 Feb 2017 UTC: INFO: QC.py(180): Changed (14/553) 1:6 218:223 552 553 to QC_BAD because changed salinity implies changed optode oxygen 16:02:52 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:02:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:02:52 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 97: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.53% reduction 16:02:52 03 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.97 16:02:52 03 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:02:52 03 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:02:52 03 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:02:52 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:02:52 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:03:28 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 16:03:28 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:03:28 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:03:35 03 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:03:35 03 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:03:35 03 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:03:35 03 Feb 2017 UTC /home/sg626/p6260097.log /home/sg626/p6260097.eng /home/sg626/p6260097.asc /home/sg626/p6260097.pro /home/sg626/p6260097.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:03:35 03 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:03:35 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:03:35 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:03:35 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:03:35 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:03:35 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:03:35 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:03:35 03 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:03:35 03 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:03:35 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:03:35 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:03:35 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:03:35 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:03:35 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:03:35 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:03:35 03 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:03:35 03 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:03:35 03 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:03:35 03 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:03:35 03 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:03:35 03 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:03:35 03 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:03:35 03 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:03:35 03 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 16:03:35 03 Feb 2017 UTC 19:07:25 03 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 13292 19:07:25 03 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:09:48 03 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 13409 19:09:48 03 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:09:48 03 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:09:48 03 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:09:48 03 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:09:48 03 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170203090947 ] 19:09:48 03 Feb 2017 UTC: INFO: Base.py(1333): PID:13417 19:09:48 03 Feb 2017 UTC: INFO: Base.py(1375): Started processing 19:09:48 03 Feb 2017 UTC 19:09:48 03 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:09:48 03 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:09:48 03 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:09:48 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:09:48 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:98 calls_made:1 call_cycle:0 19:09:48 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:09:48 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:98 calls_made:1 call_cycle:0 19:09:48 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:09:48 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:98 calls_made:1 call_cycle:0 19:09:48 03 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:98 calls_made:1 call_cycle:0 2249.9690 -15802.4470 02/03/17 19:05:31 UTC) to sdrifter@soest.hawaii.edu 19:09:48 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:98 calls_made:1 call_cycle:0 19:09:48 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:09:48 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:98 calls_made:1 call_cycle:0 19:09:48 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:09:48 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:98 calls_made:1 call_cycle:0 19:09:48 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:09:48 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:98 calls_made:1 call_cycle:0 19:09:48 03 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:09:48 03 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:09:50 03 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:09:51 03 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:09:51 03 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:09:51 03 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:09:51 03 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:09:51 03 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:09:51 03 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0098lz 19:09:51 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0098lz.x00 19:09:51 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0098lz.x01 19:09:51 03 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0098lz.r in process_file_group 19:09:51 03 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260098.log 19:09:51 03 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:09:51 03 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0098dz 19:09:51 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0098dz.x00 19:09:51 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0098dz.x01 19:09:51 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0098dz.x02 19:09:51 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0098dz.x03 19:09:51 03 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0098dz.r in process_file_group 19:09:51 03 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [98] 19:09:51 03 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [98] 19:09:51 03 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260098) for profiles 19:09:51 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 19:09:51 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/577) 576 to QC_BAD because CT out of water 19:09:51 03 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.122m) 19:09:51 03 Feb 2017 UTC: INFO: QC.py(365): Changed (7/577) 4 208:210 229 242 244 to QC_PROBABLY_BAD because raw temperature spikes 19:09:51 03 Feb 2017 UTC: INFO: QC.py(408): Changed (3/577) 210 242 244 to QC_PROBABLY_BAD because raw conductivity spikes 19:09:51 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/577) 577 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 19:09:51 03 Feb 2017 UTC: INFO: QC.py(180): Changed (7/577) 4 208:210 229 242 244 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:09:51 03 Feb 2017 UTC: INFO: QC.py(180): Changed (2/577) 576 577 to QC_BAD because changed raw cond implies changed raw salinity 19:09:51 03 Feb 2017 UTC: INFO: QC.py(365): Changed (7/577) 4 208:210 229 242 244 to QC_INTERPOLATED because temperature spikes 19:09:51 03 Feb 2017 UTC: INFO: QC.py(408): Changed (3/577) 210 242 244 to QC_INTERPOLATED because conductivity spikes 19:09:51 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/577) 577 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 19:09:51 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/577) 226:231 to QC_BAD because slow apogee CT flow 19:09:51 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/577) 1:6 to QC_BAD because prior to dive start 19:09:51 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/577) 1:6 226:231 576 577 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:09:51 03 Feb 2017 UTC: INFO: QC.py(180): Changed (14/577) 1:6 226:231 576 577 to QC_BAD because changed corrected salin implies changed speed 19:09:52 03 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:09:52 03 Feb 2017 UTC: INFO: QC.py(180): Changed (5/577) 208:210 242 244 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 19:09:52 03 Feb 2017 UTC: INFO: QC.py(180): Changed (5/577) 208:210 242 244 to QC_INTERPOLATED because changed corrected temp implies changed speed 19:09:52 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.92 cm/s 19:09:52 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.27 cm/s 19:09:52 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:09:52 03 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/577) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:09:52 03 Feb 2017 UTC: INFO: QC.py(180): Changed (1/577) 4 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 19:09:52 03 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/577) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 19:09:52 03 Feb 2017 UTC: INFO: QC.py(180): Changed (1/577) 4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 19:09:52 03 Feb 2017 UTC: INFO: QC.py(180): Changed (14/577) 1:6 226:231 576 577 to QC_BAD because changed salinity implies changed optode oxygen 19:09:52 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:09:52 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 19:09:52 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 98: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.43% reduction 19:09:52 03 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.98 19:09:52 03 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:09:52 03 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:09:52 03 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:09:52 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 19:09:52 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 19:10:29 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 19:10:30 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 19:10:30 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 19:10:37 03 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:10:37 03 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:10:37 03 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:10:37 03 Feb 2017 UTC /home/sg626/p6260098.log /home/sg626/p6260098.eng /home/sg626/p6260098.asc /home/sg626/p6260098.pro /home/sg626/p6260098.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 19:10:37 03 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:10:37 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:10:37 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:10:37 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:10:37 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:10:37 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:10:37 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:10:37 03 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:10:37 03 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:10:37 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:10:37 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:10:37 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:10:37 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:10:37 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:10:37 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:10:37 03 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:10:37 03 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:10:37 03 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:10:37 03 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:10:37 03 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:10:37 03 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:10:37 03 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:10:37 03 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:10:37 03 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 19:10:37 03 Feb 2017 UTC 22:13:26 03 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 18539 22:13:26 03 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:15:52 03 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 18655 22:15:52 03 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:15:52 03 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:15:52 03 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:15:52 03 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:15:52 03 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170203121551 ] 22:15:52 03 Feb 2017 UTC: INFO: Base.py(1333): PID:18663 22:15:52 03 Feb 2017 UTC: INFO: Base.py(1375): Started processing 22:15:52 03 Feb 2017 UTC 22:15:52 03 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:15:52 03 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:15:52 03 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:15:52 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:15:52 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:99 calls_made:1 call_cycle:0 22:15:52 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:15:52 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:99 calls_made:1 call_cycle:0 22:15:52 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:15:52 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:99 calls_made:1 call_cycle:0 22:15:52 03 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:99 calls_made:1 call_cycle:0 2249.5200 -15802.7990 02/03/17 22:11:32 UTC) to sdrifter@soest.hawaii.edu 22:15:52 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:99 calls_made:1 call_cycle:0 22:15:52 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:15:52 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:99 calls_made:1 call_cycle:0 22:15:52 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:15:52 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:99 calls_made:1 call_cycle:0 22:15:52 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:15:52 03 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:99 calls_made:1 call_cycle:0 22:15:52 03 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:15:52 03 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:15:54 03 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:15:54 03 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:15:54 03 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:15:54 03 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:15:54 03 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:15:54 03 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:15:55 03 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0099lz 22:15:55 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0099lz.x00 22:15:55 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0099lz.x01 22:15:55 03 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0099lz.r in process_file_group 22:15:55 03 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260099.log 22:15:55 03 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 22:15:55 03 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0099dz 22:15:55 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0099dz.x00 22:15:55 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0099dz.x01 22:15:55 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0099dz.x02 22:15:55 03 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0099dz.x03 22:15:55 03 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0099dz.r in process_file_group 22:15:55 03 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [99] 22:15:55 03 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [99] 22:15:55 03 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260099) for profiles 22:15:55 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 22:15:55 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/575) 575 to QC_BAD because CT out of water 22:15:55 03 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.037m) 22:15:55 03 Feb 2017 UTC: INFO: QC.py(365): Changed (9/575) 2 3 195 203 204 209 221 237 574 to QC_PROBABLY_BAD because raw temperature spikes 22:15:55 03 Feb 2017 UTC: INFO: QC.py(408): Changed (4/575) 195 203 204 237 to QC_PROBABLY_BAD because raw conductivity spikes 22:15:55 03 Feb 2017 UTC: INFO: QC.py(180): Changed (9/575) 2 3 195 203 204 209 221 237 574 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 22:15:55 03 Feb 2017 UTC: INFO: QC.py(180): Changed (1/575) 575 to QC_BAD because changed raw cond implies changed raw salinity 22:15:55 03 Feb 2017 UTC: INFO: QC.py(365): Changed (9/575) 2 3 195 203 204 209 221 237 574 to QC_INTERPOLATED because temperature spikes 22:15:55 03 Feb 2017 UTC: INFO: QC.py(408): Changed (4/575) 195 203 204 237 to QC_INTERPOLATED because conductivity spikes 22:15:55 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/575) 218:223 to QC_BAD because slow apogee CT flow 22:15:55 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/575) 1:6 to QC_BAD because prior to dive start 22:15:55 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/575) 574 to QC_BAD because end of climb 22:15:55 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/575) 1:6 218:223 574 575 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:15:55 03 Feb 2017 UTC: INFO: QC.py(180): Changed (14/575) 1:6 218:223 574 575 to QC_BAD because changed corrected salin implies changed speed 22:15:56 03 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:15:56 03 Feb 2017 UTC: INFO: QC.py(180): Changed (5/575) 195 203 204 209 237 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 22:15:56 03 Feb 2017 UTC: INFO: QC.py(180): Changed (5/575) 195 203 204 209 237 to QC_INTERPOLATED because changed corrected temp implies changed speed 22:15:56 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.61 cm/s 22:15:56 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.31 cm/s 22:15:56 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:15:56 03 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (159/575) 114 115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:15:56 03 Feb 2017 UTC: INFO: QC.py(180): Changed (4/575) 2 3 221 574 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 22:15:56 03 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (159/575) 114 115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 22:15:56 03 Feb 2017 UTC: INFO: QC.py(180): Changed (4/575) 2 3 221 574 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 22:15:56 03 Feb 2017 UTC: INFO: QC.py(180): Changed (14/575) 1:6 218:223 574 575 to QC_BAD because changed salinity implies changed optode oxygen 22:15:56 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 22:15:56 03 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 22:15:56 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 99: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.43% reduction 22:15:56 03 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.99 22:15:56 03 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:15:56 03 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:15:56 03 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:15:56 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 22:15:56 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 22:16:34 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 22:16:34 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 22:16:34 03 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 22:16:41 03 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:16:41 03 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:16:41 03 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:16:41 03 Feb 2017 UTC /home/sg626/p6260099.log /home/sg626/p6260099.eng /home/sg626/p6260099.asc /home/sg626/p6260099.pro /home/sg626/p6260099.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 22:16:41 03 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:16:41 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:16:41 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:16:41 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:16:41 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:16:41 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:16:41 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:16:41 03 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:16:41 03 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:16:41 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:16:41 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:16:41 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:16:41 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:16:41 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:16:41 03 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:16:41 03 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:16:41 03 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:16:41 03 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:16:41 03 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:16:41 03 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:16:41 03 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:16:41 03 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:16:41 03 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:16:41 03 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 22:16:41 03 Feb 2017 UTC 01:19:09 04 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 23924 01:19:10 04 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:21:56 04 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 24198 01:21:56 04 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:21:56 04 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:21:56 04 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:21:56 04 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:21:56 04 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170203152155 ] 01:21:56 04 Feb 2017 UTC: INFO: Base.py(1333): PID:24206 01:21:56 04 Feb 2017 UTC: INFO: Base.py(1375): Started processing 01:21:56 04 Feb 2017 UTC 01:21:56 04 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:21:56 04 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:21:56 04 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:21:56 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:21:56 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:100 calls_made:1 call_cycle:0 01:21:56 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:21:56 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:100 calls_made:1 call_cycle:0 01:21:56 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:21:56 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:100 calls_made:1 call_cycle:0 01:21:56 04 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:100 calls_made:1 call_cycle:0 2249.3360 -15802.2010 02/04/17 01:17:13 UTC) to sdrifter@soest.hawaii.edu 01:21:56 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:100 calls_made:1 call_cycle:0 01:21:56 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:21:56 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:100 calls_made:1 call_cycle:0 01:21:56 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:21:56 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:100 calls_made:1 call_cycle:0 01:21:56 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:21:56 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:100 calls_made:1 call_cycle:0 01:21:56 04 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:21:56 04 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:21:58 04 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:21:58 04 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:21:58 04 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:21:58 04 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:21:58 04 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:21:58 04 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:21:59 04 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0100lz 01:21:59 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0100lz.x00 01:21:59 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0100lz.x01 01:21:59 04 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0100lz.r in process_file_group 01:21:59 04 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260100.log 01:21:59 04 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:21:59 04 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0100dz 01:21:59 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0100dz.x00 01:21:59 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0100dz.x01 01:21:59 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0100dz.x02 01:21:59 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0100dz.x03 01:21:59 04 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0100dz.r in process_file_group 01:21:59 04 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [100] 01:21:59 04 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [100] 01:21:59 04 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260100) for profiles 01:21:59 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:21:59 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/567) 565:567 to QC_BAD because CT out of water 01:21:59 04 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.143m) 01:21:59 04 Feb 2017 UTC: INFO: QC.py(365): Changed (5/567) 3:5 564 566 to QC_PROBABLY_BAD because raw temperature spikes 01:21:59 04 Feb 2017 UTC: INFO: QC.py(377): Changed (2/567) 566 567 to QC_BAD because raw salinity below bound 01:21:59 04 Feb 2017 UTC: INFO: QC.py(408): Changed (1/567) 233 to QC_PROBABLY_BAD because raw conductivity spikes 01:21:59 04 Feb 2017 UTC: INFO: QC.py(180): Changed (4/567) 3:5 564 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:21:59 04 Feb 2017 UTC: INFO: QC.py(180): Changed (1/567) 233 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 01:21:59 04 Feb 2017 UTC: INFO: QC.py(180): Changed (1/567) 565 to QC_BAD because changed raw cond implies changed raw salinity 01:21:59 04 Feb 2017 UTC: INFO: QC.py(365): Changed (5/567) 3:5 564 566 to QC_INTERPOLATED because temperature spikes 01:21:59 04 Feb 2017 UTC: INFO: QC.py(377): Changed (2/567) 566 567 to QC_BAD because salinity below bound 01:21:59 04 Feb 2017 UTC: INFO: QC.py(408): Changed (1/567) 233 to QC_INTERPOLATED because conductivity spikes 01:21:59 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/567) 219:224 to QC_BAD because slow apogee CT flow 01:21:59 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/567) 1:6 to QC_BAD because prior to dive start 01:21:59 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/567) 1:6 219:224 565:567 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:21:59 04 Feb 2017 UTC: INFO: QC.py(180): Changed (15/567) 1:6 219:224 565:567 to QC_BAD because changed corrected salin implies changed speed 01:22:00 04 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:22:00 04 Feb 2017 UTC: INFO: QC.py(180): Changed (1/567) 564 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 01:22:00 04 Feb 2017 UTC: INFO: QC.py(180): Changed (1/567) 233 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 01:22:00 04 Feb 2017 UTC: INFO: QC.py(180): Changed (1/567) 564 to QC_INTERPOLATED because changed corrected temp implies changed speed 01:22:00 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.87 cm/s 01:22:00 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.41 cm/s 01:22:00 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:22:00 04 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (158/567) 114 115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:22:00 04 Feb 2017 UTC: INFO: QC.py(180): Changed (5/567) 3:5 564 566 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 01:22:00 04 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (158/567) 114 115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 01:22:00 04 Feb 2017 UTC: INFO: QC.py(180): Changed (5/567) 3:5 564 566 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 01:22:00 04 Feb 2017 UTC: INFO: QC.py(180): Changed (15/567) 1:6 219:224 565:567 to QC_BAD because changed salinity implies changed optode oxygen 01:22:00 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:22:00 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:22:00 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 100: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.65% reduction 01:22:00 04 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.100 01:22:00 04 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:22:00 04 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:22:00 04 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:22:00 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:22:00 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 01:22:38 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 01:22:38 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 01:22:38 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 01:22:46 04 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:22:46 04 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:22:46 04 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:22:46 04 Feb 2017 UTC /home/sg626/p6260100.log /home/sg626/p6260100.eng /home/sg626/p6260100.asc /home/sg626/p6260100.pro /home/sg626/p6260100.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 01:22:46 04 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:22:46 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:22:46 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:22:46 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:22:46 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:22:46 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:22:46 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:22:46 04 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:22:46 04 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:22:46 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:22:46 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:22:46 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:22:46 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:22:46 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:22:46 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:22:46 04 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:22:46 04 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:22:46 04 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:22:46 04 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:22:46 04 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:22:46 04 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:22:46 04 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:22:46 04 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:22:46 04 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 01:22:46 04 Feb 2017 UTC 04:26:52 04 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 29613 04:26:52 04 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:29:12 04 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 29726 04:29:12 04 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:29:12 04 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:29:12 04 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:29:12 04 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:29:12 04 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170203182911 ] 04:29:12 04 Feb 2017 UTC: INFO: Base.py(1333): PID:29733 04:29:12 04 Feb 2017 UTC: INFO: Base.py(1375): Started processing 04:29:12 04 Feb 2017 UTC 04:29:12 04 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:29:12 04 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:29:12 04 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:29:12 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:29:12 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:101 calls_made:1 call_cycle:0 04:29:12 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:29:12 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:101 calls_made:1 call_cycle:0 04:29:12 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:29:12 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:101 calls_made:1 call_cycle:0 04:29:12 04 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:101 calls_made:1 call_cycle:0 2248.4110 -15802.7240 02/04/17 04:25:00 UTC) to sdrifter@soest.hawaii.edu 04:29:12 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:101 calls_made:1 call_cycle:0 04:29:12 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:29:12 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:101 calls_made:1 call_cycle:0 04:29:12 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:29:12 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:101 calls_made:1 call_cycle:0 04:29:12 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:29:12 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:101 calls_made:1 call_cycle:0 04:29:12 04 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:29:12 04 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:29:14 04 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:29:15 04 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:29:15 04 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:29:15 04 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:29:15 04 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:29:15 04 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:29:15 04 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0101lz 04:29:15 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0101lz.x00 04:29:15 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0101lz.x01 04:29:15 04 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0101lz.r in process_file_group 04:29:15 04 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260101.log 04:29:15 04 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:29:15 04 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0101dz 04:29:15 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0101dz.x00 04:29:15 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0101dz.x01 04:29:15 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0101dz.x02 04:29:15 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0101dz.x03 04:29:15 04 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0101dz.r in process_file_group 04:29:15 04 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [101] 04:29:15 04 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [101] 04:29:15 04 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260101) for profiles 04:29:15 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 04:29:15 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/562) 561 to QC_BAD because CT out of water 04:29:15 04 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.012m) 04:29:15 04 Feb 2017 UTC: INFO: QC.py(365): Changed (4/562) 3 5 210 247 to QC_PROBABLY_BAD because raw temperature spikes 04:29:15 04 Feb 2017 UTC: INFO: QC.py(180): Changed (4/562) 3 5 210 247 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:29:15 04 Feb 2017 UTC: INFO: QC.py(180): Changed (1/562) 561 to QC_BAD because changed raw cond implies changed raw salinity 04:29:15 04 Feb 2017 UTC: INFO: QC.py(365): Changed (4/562) 3 5 210 247 to QC_INTERPOLATED because temperature spikes 04:29:15 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/562) 226:231 to QC_BAD because slow apogee CT flow 04:29:15 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/562) 1:6 to QC_BAD because prior to dive start 04:29:15 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/562) 562 to QC_BAD because end of climb 04:29:15 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/562) 1:6 226:231 561 562 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:29:15 04 Feb 2017 UTC: INFO: QC.py(180): Changed (14/562) 1:6 226:231 561 562 to QC_BAD because changed corrected salin implies changed speed 04:29:16 04 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:29:16 04 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 101 interp_salinity data_points in_between 334 337 % suspect thermal-inertia points 336 04:29:16 04 Feb 2017 UTC: INFO: QC.py(180): Changed (2/562) 210 247 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 04:29:16 04 Feb 2017 UTC: INFO: QC.py(180): Changed (2/562) 210 247 to QC_INTERPOLATED because changed corrected temp implies changed speed 04:29:16 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.27 cm/s 04:29:16 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.49 cm/s 04:29:16 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:29:16 04 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (163/562) 118:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:29:16 04 Feb 2017 UTC: INFO: QC.py(180): Changed (2/562) 3 5 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:29:16 04 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (163/562) 118:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 04:29:16 04 Feb 2017 UTC: INFO: QC.py(180): Changed (2/562) 3 5 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:29:16 04 Feb 2017 UTC: INFO: QC.py(180): Changed (14/562) 1:6 226:231 561 562 to QC_BAD because changed salinity implies changed optode oxygen 04:29:16 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:29:16 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 04:29:16 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 101: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.49% reduction 04:29:16 04 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.101 04:29:16 04 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:29:16 04 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:29:16 04 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:29:17 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 04:29:17 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 04:29:55 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 04:29:55 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 04:29:55 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 04:30:03 04 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:30:03 04 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:30:03 04 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:30:03 04 Feb 2017 UTC /home/sg626/p6260101.log /home/sg626/p6260101.eng /home/sg626/p6260101.asc /home/sg626/p6260101.pro /home/sg626/p6260101.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 04:30:03 04 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:30:03 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:30:03 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:30:03 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:30:03 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:30:03 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:30:03 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:30:03 04 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:30:03 04 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:30:03 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:30:03 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:30:03 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:30:03 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:30:03 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:30:03 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:30:03 04 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:30:03 04 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:30:03 04 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:30:03 04 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:30:03 04 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:30:03 04 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:30:03 04 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:30:03 04 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:30:03 04 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 04:30:03 04 Feb 2017 UTC 07:34:26 04 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 2680 07:34:26 04 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:36:54 04 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 2795 07:36:54 04 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:36:54 04 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:36:54 04 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:36:54 04 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:36:54 04 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170203213653 ] 07:36:54 04 Feb 2017 UTC: INFO: Base.py(1333): PID:2803 07:36:54 04 Feb 2017 UTC: INFO: Base.py(1375): Started processing 07:36:54 04 Feb 2017 UTC 07:36:54 04 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:36:55 04 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:36:55 04 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:36:55 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:36:55 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:102 calls_made:1 call_cycle:0 07:36:55 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:36:55 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:102 calls_made:1 call_cycle:0 07:36:55 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:36:55 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:102 calls_made:1 call_cycle:0 07:36:55 04 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:102 calls_made:1 call_cycle:0 2248.4080 -15802.3610 02/04/17 07:32:31 UTC) to sdrifter@soest.hawaii.edu 07:36:55 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:102 calls_made:1 call_cycle:0 07:36:55 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:36:55 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:102 calls_made:1 call_cycle:0 07:36:55 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:36:55 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:102 calls_made:1 call_cycle:0 07:36:55 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:36:55 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:102 calls_made:1 call_cycle:0 07:36:55 04 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:36:55 04 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:36:57 04 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:36:57 04 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:36:57 04 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:36:57 04 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:36:57 04 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:36:57 04 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:36:57 04 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0102lz 07:36:57 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0102lz.x00 07:36:57 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0102lz.x01 07:36:57 04 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0102lz.r in process_file_group 07:36:57 04 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260102.log 07:36:57 04 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:36:57 04 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0102dz 07:36:57 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0102dz.x00 07:36:57 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0102dz.x01 07:36:57 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0102dz.x02 07:36:57 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0102dz.x03 07:36:57 04 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0102dz.r in process_file_group 07:36:58 04 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [102] 07:36:58 04 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [102] 07:36:58 04 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260102) for profiles 07:36:58 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 07:36:58 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/578) 577 to QC_BAD because CT out of water 07:36:58 04 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.089m) 07:36:58 04 Feb 2017 UTC: INFO: QC.py(365): Changed (5/578) 2 3 195 202 577 to QC_PROBABLY_BAD because raw temperature spikes 07:36:58 04 Feb 2017 UTC: INFO: QC.py(377): Changed (2/578) 577 578 to QC_BAD because raw salinity below bound 07:36:58 04 Feb 2017 UTC: INFO: QC.py(388): Changed (1/578) 578 to QC_BAD because bad raw salinity indicates raw conductivity issues 07:36:58 04 Feb 2017 UTC: INFO: QC.py(408): Changed (3/578) 3 195 202 to QC_PROBABLY_BAD because raw conductivity spikes 07:36:58 04 Feb 2017 UTC: INFO: QC.py(180): Changed (4/578) 2 3 195 202 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:36:58 04 Feb 2017 UTC: INFO: QC.py(365): Changed (5/578) 2 3 195 202 577 to QC_INTERPOLATED because temperature spikes 07:36:58 04 Feb 2017 UTC: INFO: QC.py(377): Changed (2/578) 577 578 to QC_BAD because salinity below bound 07:36:58 04 Feb 2017 UTC: INFO: QC.py(388): Changed (1/578) 578 to QC_BAD because bad salinity indicates conductivity issues 07:36:58 04 Feb 2017 UTC: INFO: QC.py(408): Changed (3/578) 3 195 202 to QC_INTERPOLATED because conductivity spikes 07:36:58 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/578) 224:229 to QC_BAD because slow apogee CT flow 07:36:58 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/578) 1:6 to QC_BAD because prior to dive start 07:36:58 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/578) 1:6 224:229 577 578 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:36:58 04 Feb 2017 UTC: INFO: QC.py(180): Changed (14/578) 1:6 224:229 577 578 to QC_BAD because changed corrected salin implies changed speed 07:36:58 04 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:36:58 04 Feb 2017 UTC: INFO: QC.py(180): Changed (2/578) 195 202 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 07:36:58 04 Feb 2017 UTC: INFO: QC.py(180): Changed (2/578) 195 202 to QC_INTERPOLATED because changed corrected temp implies changed speed 07:36:58 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.90 cm/s 07:36:58 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.37 cm/s 07:36:58 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:36:58 04 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/578) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:36:58 04 Feb 2017 UTC: INFO: QC.py(180): Changed (3/578) 2 3 577 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:36:58 04 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/578) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 07:36:58 04 Feb 2017 UTC: INFO: QC.py(180): Changed (3/578) 2 3 577 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:36:58 04 Feb 2017 UTC: INFO: QC.py(180): Changed (14/578) 1:6 224:229 577 578 to QC_BAD because changed salinity implies changed optode oxygen 07:36:58 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:36:58 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 07:36:59 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 102: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.42% reduction 07:36:59 04 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.102 07:36:59 04 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:36:59 04 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:36:59 04 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:36:59 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 07:36:59 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:37:38 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 07:37:38 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:37:38 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:37:46 04 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:37:46 04 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:37:46 04 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:37:46 04 Feb 2017 UTC /home/sg626/p6260102.log /home/sg626/p6260102.eng /home/sg626/p6260102.asc /home/sg626/p6260102.pro /home/sg626/p6260102.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:37:46 04 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:37:46 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:37:46 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:37:46 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:37:46 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:37:46 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:37:46 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:37:46 04 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:37:46 04 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:37:46 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:37:46 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:37:46 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:37:46 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:37:46 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:37:46 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:37:46 04 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:37:46 04 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:37:46 04 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:37:46 04 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:37:46 04 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:37:46 04 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:37:46 04 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:37:46 04 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:37:46 04 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 07:37:46 04 Feb 2017 UTC 10:34:51 04 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 8072 10:34:51 04 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:37:10 04 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 8188 10:37:10 04 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:37:10 04 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:37:10 04 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:37:10 04 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:37:10 04 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170204003710 ] 10:37:10 04 Feb 2017 UTC: INFO: Base.py(1333): PID:8195 10:37:10 04 Feb 2017 UTC: INFO: Base.py(1375): Started processing 10:37:10 04 Feb 2017 UTC 10:37:10 04 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:37:11 04 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:37:11 04 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:37:11 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:37:11 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:103 calls_made:1 call_cycle:0 10:37:11 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:37:11 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:103 calls_made:1 call_cycle:0 10:37:11 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:37:11 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:103 calls_made:1 call_cycle:0 10:37:11 04 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:103 calls_made:1 call_cycle:0 2248.1840 -15802.8010 02/04/17 10:32:52 UTC) to sdrifter@soest.hawaii.edu 10:37:16 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:103 calls_made:1 call_cycle:0 10:37:16 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:37:16 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:103 calls_made:1 call_cycle:0 10:37:16 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:37:16 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:103 calls_made:1 call_cycle:0 10:37:16 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:37:16 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:103 calls_made:1 call_cycle:0 10:37:16 04 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:37:16 04 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:37:18 04 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:37:18 04 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:37:18 04 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:37:18 04 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:37:18 04 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:37:18 04 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:37:18 04 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0103lz 10:37:18 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0103lz.x00 10:37:18 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0103lz.x01 10:37:18 04 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0103lz.r in process_file_group 10:37:18 04 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260103.log 10:37:18 04 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:37:18 04 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0103dz 10:37:18 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0103dz.x00 10:37:18 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0103dz.x01 10:37:18 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0103dz.x02 10:37:18 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0103dz.x03 10:37:18 04 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0103dz.r in process_file_group 10:37:19 04 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [103] 10:37:19 04 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [103] 10:37:19 04 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260103) for profiles 10:37:19 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 10:37:19 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/532) 532 to QC_BAD because CT out of water 10:37:19 04 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.126m) 10:37:19 04 Feb 2017 UTC: INFO: QC.py(365): Changed (6/532) 2 4 198 199 203 225 to QC_PROBABLY_BAD because raw temperature spikes 10:37:19 04 Feb 2017 UTC: INFO: QC.py(377): Changed (1/532) 532 to QC_BAD because raw salinity below bound 10:37:19 04 Feb 2017 UTC: INFO: QC.py(180): Changed (6/532) 2 4 198 199 203 225 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 10:37:19 04 Feb 2017 UTC: INFO: QC.py(365): Changed (6/532) 2 4 198 199 203 225 to QC_INTERPOLATED because temperature spikes 10:37:19 04 Feb 2017 UTC: INFO: QC.py(377): Changed (1/532) 532 to QC_BAD because salinity below bound 10:37:19 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/532) 222:227 to QC_BAD because slow apogee CT flow 10:37:19 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/532) 1:6 to QC_BAD because prior to dive start 10:37:19 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/532) 1:6 222:227 532 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:37:19 04 Feb 2017 UTC: INFO: QC.py(180): Changed (13/532) 1:6 222:227 532 to QC_BAD because changed corrected salin implies changed speed 10:37:19 04 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 10:37:19 04 Feb 2017 UTC: INFO: QC.py(180): Changed (3/532) 198 199 203 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 10:37:19 04 Feb 2017 UTC: INFO: QC.py(180): Changed (3/532) 198 199 203 to QC_INTERPOLATED because changed corrected temp implies changed speed 10:37:19 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 34.33 cm/s 10:37:19 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.59 cm/s 10:37:19 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:37:19 04 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (157/532) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:37:19 04 Feb 2017 UTC: INFO: QC.py(180): Changed (2/532) 2 4 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 10:37:19 04 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (157/532) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 10:37:19 04 Feb 2017 UTC: INFO: QC.py(180): Changed (2/532) 2 4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 10:37:19 04 Feb 2017 UTC: INFO: QC.py(180): Changed (13/532) 1:6 222:227 532 to QC_BAD because changed salinity implies changed optode oxygen 10:37:19 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:37:19 04 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:37:19 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 10:37:20 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 103: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.44% reduction 10:37:20 04 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.103 10:37:20 04 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:37:20 04 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:37:20 04 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:37:20 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 10:37:20 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 10:37:59 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 10:37:59 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 10:37:59 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 10:38:07 04 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:38:07 04 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:38:07 04 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 10:38:07 04 Feb 2017 UTC /home/sg626/p6260103.log /home/sg626/p6260103.eng /home/sg626/p6260103.asc /home/sg626/p6260103.pro /home/sg626/p6260103.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 10:38:07 04 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:38:07 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:38:07 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:38:07 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:38:07 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:38:07 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:38:07 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:38:07 04 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:38:07 04 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:38:07 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:38:07 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:38:07 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:38:07 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:38:07 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:38:07 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:38:07 04 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:38:07 04 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:38:07 04 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:38:07 04 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:38:07 04 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:38:07 04 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:38:07 04 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:38:07 04 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:38:07 04 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 10:38:07 04 Feb 2017 UTC 13:36:56 04 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 13693 13:36:56 04 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:39:22 04 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 13815 13:39:22 04 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:39:22 04 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:39:22 04 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:39:22 04 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:39:22 04 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170204033921 ] 13:39:22 04 Feb 2017 UTC: INFO: Base.py(1333): PID:13823 13:39:22 04 Feb 2017 UTC: INFO: Base.py(1375): Started processing 13:39:22 04 Feb 2017 UTC 13:39:22 04 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:39:22 04 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:39:22 04 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:39:22 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:39:22 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:104 calls_made:1 call_cycle:0 13:39:22 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:39:22 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:104 calls_made:1 call_cycle:0 13:39:22 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:39:22 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:104 calls_made:1 call_cycle:0 13:39:22 04 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:104 calls_made:1 call_cycle:0 2248.5830 -15801.6860 02/04/17 13:35:00 UTC) to sdrifter@soest.hawaii.edu 13:39:22 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:104 calls_made:1 call_cycle:0 13:39:22 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:39:22 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:104 calls_made:1 call_cycle:0 13:39:22 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:39:22 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:104 calls_made:1 call_cycle:0 13:39:22 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:39:22 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:104 calls_made:1 call_cycle:0 13:39:22 04 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:39:22 04 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:39:24 04 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:39:24 04 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:39:24 04 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:39:24 04 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:39:24 04 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:39:24 04 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:39:25 04 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0104lz 13:39:25 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0104lz.x00 13:39:25 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0104lz.x01 13:39:25 04 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0104lz.r in process_file_group 13:39:25 04 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260104.log 13:39:25 04 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:39:25 04 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0104dz 13:39:25 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0104dz.x00 13:39:25 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0104dz.x01 13:39:25 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0104dz.x02 13:39:25 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0104dz.x03 13:39:25 04 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0104dz.r in process_file_group 13:39:25 04 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [104] 13:39:25 04 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [104] 13:39:25 04 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260104) for profiles 13:39:25 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:39:25 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/564) 564 to QC_BAD because CT out of water 13:39:25 04 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.088m) 13:39:25 04 Feb 2017 UTC: INFO: QC.py(365): Changed (6/564) 2 206 211 224 233 236 to QC_PROBABLY_BAD because raw temperature spikes 13:39:25 04 Feb 2017 UTC: INFO: QC.py(377): Changed (1/564) 564 to QC_BAD because raw salinity below bound 13:39:25 04 Feb 2017 UTC: INFO: QC.py(408): Changed (4/564) 206 211 233 236 to QC_PROBABLY_BAD because raw conductivity spikes 13:39:25 04 Feb 2017 UTC: INFO: QC.py(180): Changed (6/564) 2 206 211 224 233 236 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:39:25 04 Feb 2017 UTC: INFO: QC.py(365): Changed (6/564) 2 206 211 224 233 236 to QC_INTERPOLATED because temperature spikes 13:39:25 04 Feb 2017 UTC: INFO: QC.py(377): Changed (1/564) 564 to QC_BAD because salinity below bound 13:39:25 04 Feb 2017 UTC: INFO: QC.py(408): Changed (4/564) 206 211 233 236 to QC_INTERPOLATED because conductivity spikes 13:39:25 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/564) 222:227 to QC_BAD because slow apogee CT flow 13:39:25 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/564) 1:6 to QC_BAD because prior to dive start 13:39:25 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/564) 1:6 222:227 564 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:39:25 04 Feb 2017 UTC: INFO: QC.py(180): Changed (13/564) 1:6 222:227 564 to QC_BAD because changed corrected salin implies changed speed 13:39:26 04 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:39:26 04 Feb 2017 UTC: INFO: QC.py(180): Changed (4/564) 206 211 233 236 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 13:39:26 04 Feb 2017 UTC: INFO: QC.py(180): Changed (4/564) 206 211 233 236 to QC_INTERPOLATED because changed corrected temp implies changed speed 13:39:26 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.27 cm/s 13:39:26 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.33 cm/s 13:39:26 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:39:26 04 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (155/564) 118:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:39:26 04 Feb 2017 UTC: INFO: QC.py(180): Changed (4/564) 2 206 211 236 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:39:26 04 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (155/564) 118:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:39:26 04 Feb 2017 UTC: INFO: QC.py(180): Changed (4/564) 2 206 211 236 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:39:26 04 Feb 2017 UTC: INFO: QC.py(180): Changed (13/564) 1:6 222:227 564 to QC_BAD because changed salinity implies changed optode oxygen 13:39:26 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:39:26 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:39:26 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 104: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.30% reduction 13:39:26 04 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.104 13:39:26 04 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:39:26 04 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:39:26 04 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:39:27 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:39:27 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:40:07 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 13:40:07 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:40:07 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:40:15 04 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:40:15 04 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:40:15 04 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:40:15 04 Feb 2017 UTC /home/sg626/p6260104.log /home/sg626/p6260104.eng /home/sg626/p6260104.asc /home/sg626/p6260104.pro /home/sg626/p6260104.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:40:15 04 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:40:15 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:40:15 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:40:15 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:40:15 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:40:15 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:40:15 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:40:15 04 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:40:15 04 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:40:15 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:40:15 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:40:15 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:40:15 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:40:15 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:40:15 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:40:15 04 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:40:15 04 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:40:15 04 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:40:15 04 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:40:15 04 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:40:15 04 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:40:15 04 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:40:15 04 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:40:15 04 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 13:40:15 04 Feb 2017 UTC 16:41:57 04 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 19749 16:41:57 04 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:42:07 04 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 19835 16:42:07 04 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:42:07 04 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:42:07 04 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:42:07 04 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:42:07 04 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170204064207 ] 16:42:07 04 Feb 2017 UTC: INFO: Base.py(1333): PID:19844 16:42:08 04 Feb 2017 UTC: INFO: Base.py(1375): Started processing 16:42:08 04 Feb 2017 UTC 16:42:08 04 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:42:08 04 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:42:08 04 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:42:08 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:42:08 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:1 call_cycle:0 16:42:08 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:42:08 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:1 call_cycle:0 16:42:08 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:42:08 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:1 call_cycle:0 16:42:08 04 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:105 calls_made:1 call_cycle:0 2248.1620 -15801.7910 02/04/17 16:40:01 UTC) to sdrifter@soest.hawaii.edu 16:42:08 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:1 call_cycle:0 16:42:08 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:42:08 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:1 call_cycle:0 16:42:08 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:42:08 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:1 call_cycle:0 16:42:08 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:42:08 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:1 call_cycle:0 16:42:08 04 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:42:08 04 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:42:10 04 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:42:10 04 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:42:10 04 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:42:10 04 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:42:10 04 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:42:10 04 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:42:11 04 Feb 2017 UTC: WARNING: Base.py(1624): No dives to process 16:42:11 04 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [] 16:42:11 04 Feb 2017 UTC: INFO: Base.py(1780): No dives found to profile 16:42:11 04 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.105 16:42:11 04 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:42:11 04 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:42:11 04 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:42:11 04 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:42:11 04 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:42:11 04 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:42:11 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:42:11 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:42:11 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:42:11 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:42:11 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:42:11 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:42:11 04 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:42:11 04 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:42:11 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:42:11 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:42:11 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:42:11 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:42:11 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:42:11 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:42:11 04 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:42:11 04 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:42:11 04 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:42:11 04 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:42:11 04 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:42:11 04 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:42:11 04 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:42:11 04 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:42:11 04 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 16:42:11 04 Feb 2017 UTC 16:44:30 04 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 20156 16:44:30 04 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:46:51 04 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 20342 16:46:51 04 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:46:51 04 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:46:51 04 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:46:51 04 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:46:51 04 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170204064650 ] 16:46:51 04 Feb 2017 UTC: INFO: Base.py(1333): PID:20350 16:46:51 04 Feb 2017 UTC: INFO: Base.py(1375): Started processing 16:46:51 04 Feb 2017 UTC 16:46:51 04 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:46:51 04 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:46:51 04 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:46:51 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:46:51 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:2 call_cycle:0 16:46:51 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:46:51 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:2 call_cycle:0 16:46:51 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:46:51 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:2 call_cycle:0 16:46:51 04 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:105 calls_made:2 call_cycle:0 2248.1620 -15801.7910 02/04/17 16:40:01 UTC) to sdrifter@soest.hawaii.edu 16:46:51 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:2 call_cycle:0 16:46:51 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:46:51 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:2 call_cycle:0 16:46:51 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:46:51 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:2 call_cycle:0 16:46:51 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:46:51 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:2 call_cycle:0 16:46:51 04 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:46:51 04 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:46:53 04 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:46:54 04 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:46:54 04 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:46:54 04 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:46:54 04 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:46:54 04 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:46:54 04 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0105lz 16:46:54 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0105lz.x00 16:46:54 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0105lz.x01 16:46:54 04 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0105lz.r in process_file_group 16:46:54 04 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260105.log 16:46:54 04 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:46:54 04 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0105dz 16:46:54 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0105dz.x00 16:46:54 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0105dz.x01 16:46:54 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0105dz.x02 16:46:54 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0105dz.x03 16:46:54 04 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0105dz.r in process_file_group 16:46:54 04 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [105] 16:46:54 04 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [105] 16:46:54 04 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260105) for profiles 16:46:54 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:46:54 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/562) 561 562 to QC_BAD because CT out of water 16:46:54 04 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.119m) 16:46:54 04 Feb 2017 UTC: INFO: QC.py(365): Changed (4/562) 5 211 225 237 to QC_PROBABLY_BAD because raw temperature spikes 16:46:54 04 Feb 2017 UTC: INFO: QC.py(377): Changed (1/562) 562 to QC_BAD because raw salinity below bound 16:46:54 04 Feb 2017 UTC: INFO: QC.py(408): Changed (4/562) 208 211 214 237 to QC_PROBABLY_BAD because raw conductivity spikes 16:46:55 04 Feb 2017 UTC: INFO: QC.py(180): Changed (4/562) 5 211 225 237 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:46:55 04 Feb 2017 UTC: INFO: QC.py(180): Changed (2/562) 208 214 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 16:46:55 04 Feb 2017 UTC: INFO: QC.py(180): Changed (1/562) 561 to QC_BAD because changed raw cond implies changed raw salinity 16:46:55 04 Feb 2017 UTC: INFO: QC.py(365): Changed (4/562) 5 211 225 237 to QC_INTERPOLATED because temperature spikes 16:46:55 04 Feb 2017 UTC: INFO: QC.py(377): Changed (1/562) 562 to QC_BAD because salinity below bound 16:46:55 04 Feb 2017 UTC: INFO: QC.py(408): Changed (4/562) 208 211 214 237 to QC_INTERPOLATED because conductivity spikes 16:46:55 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/562) 222:227 to QC_BAD because slow apogee CT flow 16:46:55 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/562) 1:6 to QC_BAD because prior to dive start 16:46:55 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/562) 1:6 222:227 561 562 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:46:55 04 Feb 2017 UTC: INFO: QC.py(180): Changed (14/562) 1:6 222:227 561 562 to QC_BAD because changed corrected salin implies changed speed 16:46:55 04 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:46:55 04 Feb 2017 UTC: INFO: QC.py(180): Changed (2/562) 211 237 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 16:46:55 04 Feb 2017 UTC: INFO: QC.py(180): Changed (2/562) 208 214 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 16:46:55 04 Feb 2017 UTC: INFO: QC.py(180): Changed (2/562) 211 237 to QC_INTERPOLATED because changed corrected temp implies changed speed 16:46:55 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.17 cm/s 16:46:55 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.54 cm/s 16:46:55 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:46:55 04 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/562) 119 120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:46:55 04 Feb 2017 UTC: INFO: QC.py(180): Changed (2/562) 5 211 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:46:55 04 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/562) 119 120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:46:55 04 Feb 2017 UTC: INFO: QC.py(180): Changed (2/562) 5 211 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:46:55 04 Feb 2017 UTC: INFO: QC.py(180): Changed (14/562) 1:6 222:227 561 562 to QC_BAD because changed salinity implies changed optode oxygen 16:46:55 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:46:55 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:46:55 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 105: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.49% reduction 16:46:56 04 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.105 16:46:56 04 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:46:56 04 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:46:56 04 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:46:56 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:46:56 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:47:36 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 16:47:36 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:47:36 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:47:44 04 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:47:44 04 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:47:44 04 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:47:44 04 Feb 2017 UTC /home/sg626/p6260105.log /home/sg626/p6260105.eng /home/sg626/p6260105.asc /home/sg626/p6260105.pro /home/sg626/p6260105.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:47:44 04 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:47:44 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:47:44 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:47:44 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:47:44 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:47:44 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:47:44 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:47:44 04 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:47:44 04 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:47:44 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:47:44 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:47:44 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:47:44 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:47:44 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:47:44 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:47:44 04 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:47:44 04 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:47:44 04 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:47:44 04 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:47:44 04 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:47:44 04 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:47:44 04 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:47:44 04 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:47:44 04 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 16:47:44 04 Feb 2017 UTC 19:49:47 04 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 30866 19:49:47 04 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:52:03 04 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 31203 19:52:03 04 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:52:03 04 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:52:03 04 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:52:03 04 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:52:03 04 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170204095202 ] 19:52:03 04 Feb 2017 UTC: INFO: Base.py(1333): PID:31211 19:52:03 04 Feb 2017 UTC: INFO: Base.py(1375): Started processing 19:52:03 04 Feb 2017 UTC 19:52:03 04 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:52:04 04 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:52:04 04 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:52:04 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:52:04 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:106 calls_made:1 call_cycle:0 19:52:04 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:52:04 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:106 calls_made:1 call_cycle:0 19:52:04 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:52:04 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:106 calls_made:1 call_cycle:0 19:52:04 04 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:106 calls_made:1 call_cycle:0 2247.5080 -15802.2410 02/04/17 19:47:50 UTC) to sdrifter@soest.hawaii.edu 19:52:04 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:106 calls_made:1 call_cycle:0 19:52:04 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:52:04 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:106 calls_made:1 call_cycle:0 19:52:04 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:52:04 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:106 calls_made:1 call_cycle:0 19:52:04 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:52:04 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:106 calls_made:1 call_cycle:0 19:52:04 04 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:52:04 04 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:52:06 04 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:52:06 04 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:52:06 04 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:52:06 04 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:52:06 04 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:52:06 04 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:52:06 04 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0106lz 19:52:06 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0106lz.x00 19:52:06 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0106lz.x01 19:52:06 04 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0106lz.r in process_file_group 19:52:06 04 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260106.log 19:52:06 04 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:52:06 04 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0106dz 19:52:06 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0106dz.x00 19:52:06 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0106dz.x01 19:52:06 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0106dz.x02 19:52:06 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0106dz.x03 19:52:06 04 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0106dz.r in process_file_group 19:52:07 04 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [106] 19:52:07 04 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [106] 19:52:07 04 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260106) for profiles 19:52:07 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 19:52:07 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/545) 544 545 to QC_BAD because CT out of water 19:52:07 04 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.162m) 19:52:07 04 Feb 2017 UTC: INFO: QC.py(365): Changed (4/545) 3 211 215 229 to QC_PROBABLY_BAD because raw temperature spikes 19:52:07 04 Feb 2017 UTC: INFO: QC.py(377): Changed (1/545) 544 to QC_BAD because raw salinity below bound 19:52:07 04 Feb 2017 UTC: INFO: QC.py(408): Changed (3/545) 211 215 229 to QC_PROBABLY_BAD because raw conductivity spikes 19:52:07 04 Feb 2017 UTC: INFO: QC.py(180): Changed (4/545) 3 211 215 229 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:52:07 04 Feb 2017 UTC: INFO: QC.py(180): Changed (1/545) 545 to QC_BAD because changed raw cond implies changed raw salinity 19:52:07 04 Feb 2017 UTC: INFO: QC.py(365): Changed (4/545) 3 211 215 229 to QC_INTERPOLATED because temperature spikes 19:52:07 04 Feb 2017 UTC: INFO: QC.py(377): Changed (1/545) 544 to QC_BAD because salinity below bound 19:52:07 04 Feb 2017 UTC: INFO: QC.py(408): Changed (3/545) 211 215 229 to QC_INTERPOLATED because conductivity spikes 19:52:07 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/545) 221:226 to QC_BAD because slow apogee CT flow 19:52:07 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/545) 1:6 to QC_BAD because prior to dive start 19:52:07 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/545) 543 to QC_BAD because end of climb 19:52:07 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/545) 1:6 221:226 543:545 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:52:07 04 Feb 2017 UTC: INFO: QC.py(180): Changed (15/545) 1:6 221:226 543:545 to QC_BAD because changed corrected salin implies changed speed 19:52:07 04 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:52:07 04 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 106 interp_salinity data_points in_between 367 371 % suspect thermal-inertia points 370 371 19:52:07 04 Feb 2017 UTC: INFO: QC.py(180): Changed (3/545) 211 215 229 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 19:52:08 04 Feb 2017 UTC: INFO: QC.py(180): Changed (3/545) 211 215 229 to QC_INTERPOLATED because changed corrected temp implies changed speed 19:52:08 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.03 cm/s 19:52:08 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.50 cm/s 19:52:08 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:52:08 04 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (163/545) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:52:08 04 Feb 2017 UTC: INFO: QC.py(180): Changed (2/545) 3 211 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 19:52:08 04 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (163/545) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 19:52:08 04 Feb 2017 UTC: INFO: QC.py(180): Changed (2/545) 3 211 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 19:52:08 04 Feb 2017 UTC: INFO: QC.py(180): Changed (15/545) 1:6 221:226 543:545 to QC_BAD because changed salinity implies changed optode oxygen 19:52:08 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:52:08 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 19:52:08 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 106: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.75% reduction 19:52:08 04 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.106 19:52:08 04 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:52:08 04 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:52:08 04 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:52:08 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 19:52:08 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 19:52:49 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 19:52:50 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 19:52:50 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 19:52:58 04 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:52:58 04 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:52:58 04 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:52:58 04 Feb 2017 UTC /home/sg626/p6260106.log /home/sg626/p6260106.eng /home/sg626/p6260106.asc /home/sg626/p6260106.pro /home/sg626/p6260106.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 19:52:58 04 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:52:58 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:52:58 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:52:58 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:52:58 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:52:58 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:52:58 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:52:58 04 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:52:58 04 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:52:58 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:52:58 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:52:58 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:52:58 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:52:58 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:52:58 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:52:58 04 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:52:58 04 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:52:58 04 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:52:58 04 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:52:58 04 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:52:58 04 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:52:58 04 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:52:58 04 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:52:58 04 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 19:52:58 04 Feb 2017 UTC 22:54:19 04 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 9272 22:54:19 04 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:56:46 04 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 9496 22:56:46 04 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:56:46 04 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:56:46 04 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:56:46 04 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:56:46 04 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170204125645 ] 22:56:46 04 Feb 2017 UTC: INFO: Base.py(1333): PID:9504 22:56:46 04 Feb 2017 UTC: INFO: Base.py(1375): Started processing 22:56:46 04 Feb 2017 UTC 22:56:46 04 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:56:46 04 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:56:46 04 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:56:46 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:56:46 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:107 calls_made:1 call_cycle:0 22:56:46 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:56:46 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:107 calls_made:1 call_cycle:0 22:56:46 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:56:46 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:107 calls_made:1 call_cycle:0 22:56:46 04 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:107 calls_made:1 call_cycle:0 2246.9810 -15802.7350 02/04/17 22:52:24 UTC) to sdrifter@soest.hawaii.edu 22:56:47 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:107 calls_made:1 call_cycle:0 22:56:47 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:56:47 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:107 calls_made:1 call_cycle:0 22:56:47 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:56:47 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:107 calls_made:1 call_cycle:0 22:56:47 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:56:47 04 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:107 calls_made:1 call_cycle:0 22:56:47 04 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:56:47 04 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:56:49 04 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:56:49 04 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:56:49 04 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:56:49 04 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:56:49 04 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:56:49 04 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:56:49 04 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0107lz 22:56:49 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0107lz.x00 22:56:49 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0107lz.x01 22:56:49 04 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0107lz.r in process_file_group 22:56:49 04 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260107.log 22:56:49 04 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 22:56:49 04 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0107dz 22:56:49 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0107dz.x00 22:56:49 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0107dz.x01 22:56:49 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0107dz.x02 22:56:49 04 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0107dz.x03 22:56:49 04 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0107dz.r in process_file_group 22:56:50 04 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [107] 22:56:50 04 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [107] 22:56:50 04 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260107) for profiles 22:56:50 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 22:56:50 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/560) 560 to QC_BAD because CT out of water 22:56:50 04 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.140m) 22:56:50 04 Feb 2017 UTC: INFO: QC.py(365): Changed (6/560) 2 3 198 215 229 234 to QC_PROBABLY_BAD because raw temperature spikes 22:56:50 04 Feb 2017 UTC: INFO: QC.py(408): Changed (4/560) 198 215 229 234 to QC_PROBABLY_BAD because raw conductivity spikes 22:56:50 04 Feb 2017 UTC: INFO: QC.py(180): Changed (6/560) 2 3 198 215 229 234 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 22:56:50 04 Feb 2017 UTC: INFO: QC.py(180): Changed (1/560) 560 to QC_BAD because changed raw cond implies changed raw salinity 22:56:50 04 Feb 2017 UTC: INFO: QC.py(365): Changed (6/560) 2 3 198 215 229 234 to QC_INTERPOLATED because temperature spikes 22:56:50 04 Feb 2017 UTC: INFO: QC.py(408): Changed (4/560) 198 215 229 234 to QC_INTERPOLATED because conductivity spikes 22:56:50 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/560) 224:229 to QC_BAD because slow apogee CT flow 22:56:50 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/560) 1:6 to QC_BAD because prior to dive start 22:56:50 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/560) 559 to QC_BAD because end of climb 22:56:50 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/560) 1:6 224:229 559 560 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:56:50 04 Feb 2017 UTC: INFO: QC.py(180): Changed (14/560) 1:6 224:229 559 560 to QC_BAD because changed corrected salin implies changed speed 22:56:50 04 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:56:50 04 Feb 2017 UTC: INFO: QC.py(180): Changed (3/560) 198 215 234 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 22:56:50 04 Feb 2017 UTC: INFO: QC.py(180): Changed (3/560) 198 215 234 to QC_INTERPOLATED because changed corrected temp implies changed speed 22:56:50 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.74 cm/s 22:56:50 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.86 cm/s 22:56:50 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:56:50 04 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (159/560) 119 120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:56:50 04 Feb 2017 UTC: INFO: QC.py(180): Changed (2/560) 2 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 22:56:50 04 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (159/560) 119 120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 22:56:50 04 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (3/560) 558:560 to QC_BAD because bad aa4330 oyxgen 22:56:50 04 Feb 2017 UTC: INFO: QC.py(180): Changed (2/560) 2 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 22:56:50 04 Feb 2017 UTC: INFO: QC.py(180): Changed (12/560) 1:6 224:229 to QC_BAD because changed salinity implies changed optode oxygen 22:56:50 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:56:50 04 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 22:56:50 04 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 22:56:51 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 107: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.50% reduction 22:56:51 04 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.107 22:56:51 04 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:56:51 04 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:56:51 04 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:56:51 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 22:56:51 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 22:57:33 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 22:57:33 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 22:57:33 04 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 22:57:41 04 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:57:41 04 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:57:41 04 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:57:41 04 Feb 2017 UTC /home/sg626/p6260107.log /home/sg626/p6260107.eng /home/sg626/p6260107.asc /home/sg626/p6260107.pro /home/sg626/p6260107.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 22:57:41 04 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:57:41 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:57:41 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:57:41 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:57:41 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:57:41 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:57:41 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:57:41 04 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:57:41 04 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:57:41 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:57:41 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:57:41 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:57:41 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:57:41 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:57:41 04 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:57:41 04 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:57:41 04 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:57:41 04 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:57:41 04 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:57:41 04 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:57:41 04 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:57:41 04 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:57:41 04 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:57:41 04 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 22:57:41 04 Feb 2017 UTC 02:05:29 05 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 21269 02:05:29 05 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:08:00 05 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 21452 02:08:00 05 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:08:00 05 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:08:00 05 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:08:00 05 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:08:01 05 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170204160800 ] 02:08:01 05 Feb 2017 UTC: INFO: Base.py(1333): PID:21460 02:08:01 05 Feb 2017 UTC: INFO: Base.py(1375): Started processing 02:08:01 05 Feb 2017 UTC 02:08:01 05 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:08:01 05 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:08:01 05 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:08:01 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:08:01 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:108 calls_made:1 call_cycle:0 02:08:01 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:08:01 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:108 calls_made:1 call_cycle:0 02:08:01 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:08:01 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:108 calls_made:1 call_cycle:0 02:08:01 05 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:108 calls_made:1 call_cycle:0 2246.4130 -15803.2630 02/05/17 02:03:32 UTC) to sdrifter@soest.hawaii.edu 02:08:01 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:108 calls_made:1 call_cycle:0 02:08:01 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:08:01 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:108 calls_made:1 call_cycle:0 02:08:01 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:08:01 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:108 calls_made:1 call_cycle:0 02:08:01 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:08:01 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:108 calls_made:1 call_cycle:0 02:08:01 05 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:08:01 05 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:08:03 05 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:08:04 05 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:08:04 05 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:08:04 05 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:08:04 05 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:08:04 05 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:08:04 05 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0108lz 02:08:04 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0108lz.x00 02:08:04 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0108lz.x01 02:08:04 05 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0108lz.r in process_file_group 02:08:04 05 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260108.log 02:08:04 05 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 02:08:04 05 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0108dz 02:08:04 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0108dz.x00 02:08:04 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0108dz.x01 02:08:04 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0108dz.x02 02:08:04 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0108dz.x03 02:08:04 05 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0108dz.r in process_file_group 02:08:04 05 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [108] 02:08:04 05 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [108] 02:08:04 05 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260108) for profiles 02:08:04 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 02:08:04 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/585) 584 585 to QC_BAD because CT out of water 02:08:04 05 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.160m) 02:08:04 05 Feb 2017 UTC: INFO: QC.py(365): Changed (11/585) 2 4 5 218 219 235 243 244 254 265 584 to QC_PROBABLY_BAD because raw temperature spikes 02:08:04 05 Feb 2017 UTC: INFO: QC.py(408): Changed (6/585) 218 219 235 243 244 265 to QC_PROBABLY_BAD because raw conductivity spikes 02:08:04 05 Feb 2017 UTC: INFO: QC.py(180): Changed (11/585) 2 4 5 218 219 235 243 244 254 265 584 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:08:04 05 Feb 2017 UTC: INFO: QC.py(180): Changed (2/585) 584 585 to QC_BAD because changed raw cond implies changed raw salinity 02:08:04 05 Feb 2017 UTC: INFO: QC.py(365): Changed (11/585) 2 4 5 218 219 235 243 244 254 265 584 to QC_INTERPOLATED because temperature spikes 02:08:04 05 Feb 2017 UTC: INFO: QC.py(408): Changed (6/585) 218 219 235 243 244 265 to QC_INTERPOLATED because conductivity spikes 02:08:04 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/585) 252:257 to QC_BAD because slow apogee CT flow 02:08:04 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/585) 1:6 to QC_BAD because prior to dive start 02:08:04 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/585) 1:6 252:257 584 585 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:08:04 05 Feb 2017 UTC: INFO: QC.py(180): Changed (14/585) 1:6 252:257 584 585 to QC_BAD because changed corrected salin implies changed speed 02:08:05 05 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:08:05 05 Feb 2017 UTC: INFO: QC.py(180): Changed (6/585) 218 219 235 243 244 265 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 02:08:05 05 Feb 2017 UTC: INFO: QC.py(180): Changed (6/585) 218 219 235 243 244 265 to QC_INTERPOLATED because changed corrected temp implies changed speed 02:08:05 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.99 cm/s 02:08:05 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.38 cm/s 02:08:05 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:08:05 05 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (165/585) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:08:05 05 Feb 2017 UTC: INFO: QC.py(180): Changed (4/585) 2 4 5 584 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:08:05 05 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (165/585) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 02:08:05 05 Feb 2017 UTC: INFO: QC.py(180): Changed (4/585) 2 4 5 584 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:08:05 05 Feb 2017 UTC: INFO: QC.py(180): Changed (14/585) 1:6 252:257 584 585 to QC_BAD because changed salinity implies changed optode oxygen 02:08:05 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:08:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 02:08:05 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 108: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.39% reduction 02:08:05 05 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.108 02:08:05 05 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:08:05 05 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:08:05 05 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:08:06 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 02:08:06 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 02:08:48 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 02:08:48 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 02:08:48 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 02:08:56 05 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:08:56 05 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:08:56 05 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:08:56 05 Feb 2017 UTC /home/sg626/p6260108.log /home/sg626/p6260108.eng /home/sg626/p6260108.asc /home/sg626/p6260108.pro /home/sg626/p6260108.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 02:08:56 05 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:08:56 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:08:56 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:08:56 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:08:56 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:08:56 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:08:56 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:08:56 05 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:08:56 05 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:08:56 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:08:56 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:08:56 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:08:56 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:08:56 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:08:56 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:08:56 05 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:08:56 05 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:08:56 05 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:08:56 05 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:08:56 05 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:08:56 05 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:08:56 05 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:08:56 05 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:08:56 05 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 02:08:56 05 Feb 2017 UTC 05:12:22 05 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 32276 05:12:23 05 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:14:55 05 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 32462 05:14:55 05 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:14:55 05 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:14:55 05 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:14:55 05 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:14:55 05 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170204191454 ] 05:14:55 05 Feb 2017 UTC: INFO: Base.py(1333): PID:32470 05:14:55 05 Feb 2017 UTC: INFO: Base.py(1375): Started processing 05:14:55 05 Feb 2017 UTC 05:14:55 05 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:14:55 05 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:14:55 05 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:14:55 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:14:55 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:109 calls_made:1 call_cycle:0 05:14:55 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:14:55 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:109 calls_made:1 call_cycle:0 05:14:55 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:14:55 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:109 calls_made:1 call_cycle:0 05:14:55 05 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:109 calls_made:1 call_cycle:0 2246.6240 -15802.8420 02/05/17 05:10:30 UTC) to sdrifter@soest.hawaii.edu 05:14:55 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:109 calls_made:1 call_cycle:0 05:14:55 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:14:55 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:109 calls_made:1 call_cycle:0 05:14:55 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:14:55 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:109 calls_made:1 call_cycle:0 05:14:55 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:14:55 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:109 calls_made:1 call_cycle:0 05:14:55 05 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:14:55 05 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:14:57 05 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:14:58 05 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:14:58 05 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:14:58 05 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:14:58 05 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:14:58 05 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:14:58 05 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0109lz 05:14:58 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0109lz.x00 05:14:58 05 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0109lz.r in process_file_group 05:14:58 05 Feb 2017 UTC: ERROR: BaseGZip.py(125): ./sg0109lz.r not a gzipped file 05:14:58 05 Feb 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0109lz.r - skipping 05:14:58 05 Feb 2017 UTC: ERROR: Base.py(243): Could not process sg0109lz - skipping 05:14:58 05 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:14:58 05 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0109lz 05:14:58 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0109lz.x00 05:14:58 05 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0109lz.r in process_file_group 05:14:58 05 Feb 2017 UTC: ERROR: BaseGZip.py(125): ./sg0109lz.r not a gzipped file 05:14:58 05 Feb 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0109lz.r - skipping 05:14:58 05 Feb 2017 UTC: ERROR: Base.py(272): Could not process sg0109lz - skipping 05:14:58 05 Feb 2017 UTC: WARNING: Base.py(1624): No dives to process 05:14:58 05 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [] 05:14:58 05 Feb 2017 UTC: INFO: Base.py(1780): No dives found to profile 05:14:58 05 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.109 05:14:58 05 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:14:58 05 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:14:58 05 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:14:58 05 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:14:58 05 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:14:58 05 Feb 2017 UTC: ERROR: Base.py(1960): Dive [109] failed to process completely. The following files were not processed completely: /home/sg626/sg0109lz.r Glider logout not seen - retransmissions from glider possible Consult baselog_170204191454 for details. 05:14:58 05 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:14:58 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:14:58 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:14:58 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:14:58 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:14:58 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:14:58 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:14:58 05 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:14:58 05 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:14:58 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:14:58 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:14:58 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:14:58 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:14:58 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:14:58 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:14:58 05 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:14:58 05 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:14:58 05 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:14:58 05 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:14:58 05 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:14:58 05 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:14:58 05 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:14:58 05 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:14:58 05 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 05:14:58 05 Feb 2017 UTC 05:16:05 05 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 32729 05:16:05 05 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:18:56 05 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 489 05:18:56 05 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:18:56 05 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:18:56 05 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:18:56 05 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:18:56 05 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170204191855 ] 05:18:56 05 Feb 2017 UTC: INFO: Base.py(1333): PID:498 05:18:56 05 Feb 2017 UTC: INFO: Base.py(1375): Started processing 05:18:56 05 Feb 2017 UTC 05:18:56 05 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:18:56 05 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:18:56 05 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:18:56 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:18:56 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:109 calls_made:2 call_cycle:0 05:18:56 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:18:56 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:109 calls_made:2 call_cycle:0 05:18:56 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:18:56 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:109 calls_made:2 call_cycle:0 05:18:56 05 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:109 calls_made:2 call_cycle:0 2246.6240 -15802.8420 02/05/17 05:10:30 UTC) to sdrifter@soest.hawaii.edu 05:18:56 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:109 calls_made:2 call_cycle:0 05:18:56 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:18:56 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:109 calls_made:2 call_cycle:0 05:18:56 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:18:56 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:109 calls_made:2 call_cycle:0 05:18:56 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:18:56 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:109 calls_made:2 call_cycle:0 05:18:56 05 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:18:56 05 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:18:59 05 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:18:59 05 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:18:59 05 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:18:59 05 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:18:59 05 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:18:59 05 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:18:59 05 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0109lz 05:18:59 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0109lz.x00 05:18:59 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0109lz.x01 05:18:59 05 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0109lz.r in process_file_group 05:18:59 05 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260109.log 05:18:59 05 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:18:59 05 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0109dz 05:18:59 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0109dz.x00 05:18:59 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0109dz.x01 05:18:59 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0109dz.x02 05:18:59 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0109dz.x03 05:18:59 05 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0109dz.r in process_file_group 05:18:59 05 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [109] 05:18:59 05 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [109] 05:19:00 05 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260109) for profiles 05:19:00 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:19:00 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/584) 584 to QC_BAD because CT out of water 05:19:00 05 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.127m) 05:19:00 05 Feb 2017 UTC: INFO: QC.py(365): Changed (4/584) 3 222 223 247 to QC_PROBABLY_BAD because raw temperature spikes 05:19:00 05 Feb 2017 UTC: INFO: QC.py(377): Changed (1/584) 584 to QC_BAD because raw salinity below bound 05:19:00 05 Feb 2017 UTC: INFO: QC.py(408): Changed (5/584) 3 203 204 218 222 to QC_PROBABLY_BAD because raw conductivity spikes 05:19:00 05 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <196 pt uncorrectable 989.0m SUSPECT weak conductivity anomaly n:-0.25 p:0.36> 05:19:00 05 Feb 2017 UTC: INFO: QC.py(180): Changed (4/584) 3 222 223 247 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:19:00 05 Feb 2017 UTC: INFO: QC.py(180): Changed (3/584) 203 204 218 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 05:19:00 05 Feb 2017 UTC: INFO: QC.py(365): Changed (4/584) 3 222 223 247 to QC_INTERPOLATED because temperature spikes 05:19:00 05 Feb 2017 UTC: INFO: QC.py(377): Changed (1/584) 584 to QC_BAD because salinity below bound 05:19:00 05 Feb 2017 UTC: INFO: QC.py(408): Changed (5/584) 3 203 204 218 222 to QC_INTERPOLATED because conductivity spikes 05:19:00 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/584) 245:250 to QC_BAD because slow apogee CT flow 05:19:00 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/584) 1:6 to QC_BAD because prior to dive start 05:19:00 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/584) 1:6 245:250 584 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:19:00 05 Feb 2017 UTC: INFO: QC.py(180): Changed (13/584) 1:6 245:250 584 to QC_BAD because changed corrected salin implies changed speed 05:19:00 05 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:19:00 05 Feb 2017 UTC: INFO: QC.py(180): Changed (2/584) 222 223 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 05:19:00 05 Feb 2017 UTC: INFO: QC.py(180): Changed (3/584) 203 204 218 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 05:19:00 05 Feb 2017 UTC: INFO: QC.py(180): Changed (2/584) 222 223 to QC_INTERPOLATED because changed corrected temp implies changed speed 05:19:00 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.43 cm/s 05:19:00 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.99 cm/s 05:19:00 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:19:00 05 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/584) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:19:00 05 Feb 2017 UTC: INFO: QC.py(180): Changed (1/584) 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:19:00 05 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/584) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:19:00 05 Feb 2017 UTC: INFO: QC.py(180): Changed (1/584) 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:19:00 05 Feb 2017 UTC: INFO: QC.py(180): Changed (13/584) 1:6 245:250 584 to QC_BAD because changed salinity implies changed optode oxygen 05:19:00 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:19:00 05 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:19:00 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 05:19:01 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 109: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.23% reduction 05:19:01 05 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.109 05:19:01 05 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:19:01 05 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:19:01 05 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:19:01 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 05:19:01 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 05:19:43 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 05:19:43 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 05:19:43 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 05:19:52 05 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:19:52 05 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:19:52 05 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:19:52 05 Feb 2017 UTC /home/sg626/p6260109.log /home/sg626/p6260109.eng /home/sg626/p6260109.asc /home/sg626/p6260109.pro /home/sg626/p6260109.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 05:19:52 05 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:19:52 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:19:52 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:19:52 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:19:52 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:19:52 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:19:52 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:19:52 05 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:19:52 05 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:19:52 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:19:52 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:19:52 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:19:52 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:19:52 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:19:52 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:19:52 05 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:19:52 05 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:19:52 05 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:19:52 05 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:19:52 05 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:19:52 05 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:19:52 05 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:19:52 05 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:19:52 05 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 05:19:52 05 Feb 2017 UTC 08:23:26 05 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 12902 08:23:26 05 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:26:01 05 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 13134 08:26:02 05 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:26:02 05 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:26:02 05 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:26:02 05 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:26:02 05 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170204222601 ] 08:26:02 05 Feb 2017 UTC: INFO: Base.py(1333): PID:13141 08:26:02 05 Feb 2017 UTC: INFO: Base.py(1375): Started processing 08:26:02 05 Feb 2017 UTC 08:26:02 05 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:26:02 05 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:26:02 05 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:26:02 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:26:02 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:110 calls_made:1 call_cycle:0 08:26:02 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:26:02 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:110 calls_made:1 call_cycle:0 08:26:02 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:26:02 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:110 calls_made:1 call_cycle:0 08:26:02 05 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:110 calls_made:1 call_cycle:0 2246.6600 -15803.0820 02/05/17 08:21:31 UTC) to sdrifter@soest.hawaii.edu 08:26:02 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:110 calls_made:1 call_cycle:0 08:26:02 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:26:02 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:110 calls_made:1 call_cycle:0 08:26:02 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:26:02 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:110 calls_made:1 call_cycle:0 08:26:02 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:26:02 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:110 calls_made:1 call_cycle:0 08:26:02 05 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:26:02 05 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:26:04 05 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:26:05 05 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:26:05 05 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:26:05 05 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:26:05 05 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:26:05 05 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:26:05 05 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0110lz 08:26:05 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0110lz.x00 08:26:05 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0110lz.x01 08:26:05 05 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0110lz.r in process_file_group 08:26:05 05 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260110.log 08:26:05 05 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:26:05 05 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0110dz 08:26:05 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0110dz.x00 08:26:05 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0110dz.x01 08:26:05 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0110dz.x02 08:26:05 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0110dz.x03 08:26:05 05 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0110dz.r in process_file_group 08:26:05 05 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [110] 08:26:05 05 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [110] 08:26:05 05 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260110) for profiles 08:26:05 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:26:05 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/596) 594:596 to QC_BAD because CT out of water 08:26:05 05 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.239m) 08:26:05 05 Feb 2017 UTC: INFO: QC.py(365): Changed (9/596) 2 4 206:208 212 213 232 247 to QC_PROBABLY_BAD because raw temperature spikes 08:26:05 05 Feb 2017 UTC: INFO: QC.py(377): Changed (1/596) 595 to QC_BAD because raw salinity below bound 08:26:05 05 Feb 2017 UTC: INFO: QC.py(408): Changed (5/596) 206:208 213 247 to QC_PROBABLY_BAD because raw conductivity spikes 08:26:05 05 Feb 2017 UTC: INFO: QC.py(180): Changed (9/596) 2 4 206:208 212 213 232 247 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:26:05 05 Feb 2017 UTC: INFO: QC.py(180): Changed (2/596) 594 596 to QC_BAD because changed raw cond implies changed raw salinity 08:26:05 05 Feb 2017 UTC: INFO: QC.py(365): Changed (9/596) 2 4 206:208 212 213 232 247 to QC_INTERPOLATED because temperature spikes 08:26:05 05 Feb 2017 UTC: INFO: QC.py(377): Changed (1/596) 595 to QC_BAD because salinity below bound 08:26:05 05 Feb 2017 UTC: INFO: QC.py(408): Changed (5/596) 206:208 213 247 to QC_INTERPOLATED because conductivity spikes 08:26:05 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/596) 230:235 to QC_BAD because slow apogee CT flow 08:26:05 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/596) 1:6 to QC_BAD because prior to dive start 08:26:05 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/596) 1:6 230:235 594:596 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:26:05 05 Feb 2017 UTC: INFO: QC.py(180): Changed (15/596) 1:6 230:235 594:596 to QC_BAD because changed corrected salin implies changed speed 08:26:06 05 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:26:06 05 Feb 2017 UTC: INFO: QC.py(180): Changed (6/596) 206:208 212 213 247 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 08:26:06 05 Feb 2017 UTC: INFO: QC.py(180): Changed (6/596) 206:208 212 213 247 to QC_INTERPOLATED because changed corrected temp implies changed speed 08:26:06 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.61 cm/s 08:26:06 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.66 cm/s 08:26:06 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:26:06 05 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (157/596) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:26:06 05 Feb 2017 UTC: INFO: QC.py(180): Changed (3/596) 2 4 206 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:26:06 05 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (157/596) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:26:06 05 Feb 2017 UTC: INFO: QC.py(180): Changed (3/596) 2 4 206 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:26:06 05 Feb 2017 UTC: INFO: QC.py(180): Changed (15/596) 1:6 230:235 594:596 to QC_BAD because changed salinity implies changed optode oxygen 08:26:06 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:26:06 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 08:26:06 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 110: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.52% reduction 08:26:06 05 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.110 08:26:06 05 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:26:06 05 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:26:06 05 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:26:07 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 08:26:07 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 08:26:50 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 08:26:50 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 08:26:50 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 08:26:59 05 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:26:59 05 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:26:59 05 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:26:59 05 Feb 2017 UTC /home/sg626/p6260110.log /home/sg626/p6260110.eng /home/sg626/p6260110.asc /home/sg626/p6260110.pro /home/sg626/p6260110.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 08:26:59 05 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:26:59 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:26:59 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:26:59 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:26:59 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:26:59 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:26:59 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:26:59 05 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:26:59 05 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:26:59 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:26:59 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:26:59 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:26:59 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:26:59 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:26:59 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:26:59 05 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:26:59 05 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:26:59 05 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:26:59 05 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:26:59 05 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:26:59 05 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:26:59 05 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:26:59 05 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:26:59 05 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 08:26:59 05 Feb 2017 UTC 11:25:49 05 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 24682 11:25:49 05 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 11:28:21 05 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 24864 11:28:21 05 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:28:21 05 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 11:28:21 05 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 11:28:21 05 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:28:21 05 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170205012820 ] 11:28:21 05 Feb 2017 UTC: INFO: Base.py(1333): PID:24872 11:28:21 05 Feb 2017 UTC: INFO: Base.py(1375): Started processing 11:28:21 05 Feb 2017 UTC 11:28:21 05 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 11:28:21 05 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 11:28:21 05 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:28:21 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:28:21 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:111 calls_made:1 call_cycle:0 11:28:21 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:28:21 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:111 calls_made:1 call_cycle:0 11:28:21 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:28:21 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:111 calls_made:1 call_cycle:0 11:28:21 05 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:111 calls_made:1 call_cycle:0 2247.0570 -15802.4240 02/05/17 11:23:55 UTC) to sdrifter@soest.hawaii.edu 11:28:21 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:111 calls_made:1 call_cycle:0 11:28:21 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:28:21 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:111 calls_made:1 call_cycle:0 11:28:21 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:28:21 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:111 calls_made:1 call_cycle:0 11:28:21 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:28:21 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:111 calls_made:1 call_cycle:0 11:28:21 05 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:28:21 05 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:28:24 05 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:28:24 05 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:28:24 05 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 11:28:24 05 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:28:24 05 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:28:24 05 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 11:28:24 05 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0111lz 11:28:24 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0111lz.x00 11:28:24 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0111lz.x01 11:28:24 05 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0111lz.r in process_file_group 11:28:24 05 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260111.log 11:28:24 05 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 11:28:24 05 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0111dz 11:28:24 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0111dz.x00 11:28:24 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0111dz.x01 11:28:24 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0111dz.x02 11:28:24 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0111dz.x03 11:28:24 05 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0111dz.r in process_file_group 11:28:25 05 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [111] 11:28:25 05 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [111] 11:28:25 05 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260111) for profiles 11:28:25 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 11:28:25 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/573) 573 to QC_BAD because CT out of water 11:28:25 05 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.071m) 11:28:25 05 Feb 2017 UTC: INFO: QC.py(365): Changed (6/573) 2 213 214 236 242 243 to QC_PROBABLY_BAD because raw temperature spikes 11:28:25 05 Feb 2017 UTC: INFO: QC.py(408): Changed (2/573) 213 242 to QC_PROBABLY_BAD because raw conductivity spikes 11:28:25 05 Feb 2017 UTC: INFO: QC.py(180): Changed (6/573) 2 213 214 236 242 243 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 11:28:25 05 Feb 2017 UTC: INFO: QC.py(180): Changed (1/573) 573 to QC_BAD because changed raw cond implies changed raw salinity 11:28:25 05 Feb 2017 UTC: INFO: QC.py(365): Changed (6/573) 2 213 214 236 242 243 to QC_INTERPOLATED because temperature spikes 11:28:25 05 Feb 2017 UTC: INFO: QC.py(408): Changed (2/573) 213 242 to QC_INTERPOLATED because conductivity spikes 11:28:25 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/573) 233:238 to QC_BAD because slow apogee CT flow 11:28:25 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/573) 1:6 to QC_BAD because prior to dive start 11:28:25 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/573) 572 to QC_BAD because end of climb 11:28:25 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/573) 1:6 233:238 572 573 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 11:28:25 05 Feb 2017 UTC: INFO: QC.py(180): Changed (14/573) 1:6 233:238 572 573 to QC_BAD because changed corrected salin implies changed speed 11:28:25 05 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 11:28:25 05 Feb 2017 UTC: INFO: QC.py(180): Changed (4/573) 213 214 242 243 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 11:28:25 05 Feb 2017 UTC: INFO: QC.py(180): Changed (4/573) 213 214 242 243 to QC_INTERPOLATED because changed corrected temp implies changed speed 11:28:25 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.01 cm/s 11:28:25 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.27 cm/s 11:28:25 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 11:28:25 05 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (152/573) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 11:28:25 05 Feb 2017 UTC: INFO: QC.py(180): Changed (2/573) 2 236 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 11:28:25 05 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (152/573) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 11:28:25 05 Feb 2017 UTC: INFO: QC.py(180): Changed (2/573) 2 236 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 11:28:25 05 Feb 2017 UTC: INFO: QC.py(180): Changed (14/573) 1:6 233:238 572 573 to QC_BAD because changed salinity implies changed optode oxygen 11:28:25 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 11:28:25 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 11:28:26 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 111: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.44% reduction 11:28:26 05 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.111 11:28:26 05 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:28:26 05 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:28:26 05 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:28:26 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 11:28:26 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 11:29:09 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 11:29:09 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 11:29:09 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 11:29:18 05 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:29:18 05 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:29:18 05 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:29:18 05 Feb 2017 UTC /home/sg626/p6260111.log /home/sg626/p6260111.eng /home/sg626/p6260111.asc /home/sg626/p6260111.pro /home/sg626/p6260111.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 11:29:18 05 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:29:18 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:29:18 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:29:18 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:29:18 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:29:18 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:29:18 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:29:18 05 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:29:18 05 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:29:18 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:29:18 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:29:18 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:29:18 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:29:18 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:29:18 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:29:18 05 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:29:18 05 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 11:29:18 05 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 11:29:18 05 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 11:29:18 05 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 11:29:18 05 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:29:18 05 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:29:18 05 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:29:18 05 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 11:29:18 05 Feb 2017 UTC 14:31:25 05 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 3264 14:31:25 05 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:34:00 05 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 3460 14:34:00 05 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:34:00 05 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 14:34:00 05 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 14:34:00 05 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:34:00 05 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170205043400 ] 14:34:00 05 Feb 2017 UTC: INFO: Base.py(1333): PID:3468 14:34:00 05 Feb 2017 UTC: INFO: Base.py(1375): Started processing 14:34:00 05 Feb 2017 UTC 14:34:00 05 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 14:34:01 05 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 14:34:01 05 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:34:01 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:34:01 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:112 calls_made:1 call_cycle:0 14:34:01 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:34:01 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:112 calls_made:1 call_cycle:0 14:34:01 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:34:01 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:112 calls_made:1 call_cycle:0 14:34:01 05 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:112 calls_made:1 call_cycle:0 2247.0250 -15802.6340 02/05/17 14:29:18 UTC) to sdrifter@soest.hawaii.edu 14:34:01 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:112 calls_made:1 call_cycle:0 14:34:01 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:34:01 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:112 calls_made:1 call_cycle:0 14:34:01 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:34:01 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:112 calls_made:1 call_cycle:0 14:34:01 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:34:01 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:112 calls_made:1 call_cycle:0 14:34:01 05 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:34:01 05 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:34:03 05 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:34:03 05 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:34:03 05 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 14:34:03 05 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:34:03 05 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:34:03 05 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 14:34:04 05 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0112lz 14:34:04 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0112lz.x00 14:34:04 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0112lz.x01 14:34:04 05 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0112lz.r in process_file_group 14:34:04 05 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260112.log 14:34:04 05 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 14:34:04 05 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0112dz 14:34:04 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0112dz.x00 14:34:04 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0112dz.x01 14:34:04 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0112dz.x02 14:34:04 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0112dz.x03 14:34:04 05 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0112dz.r in process_file_group 14:34:04 05 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [112] 14:34:04 05 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [112] 14:34:04 05 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260112) for profiles 14:34:04 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 14:34:04 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/560) 559 560 to QC_BAD because CT out of water 14:34:04 05 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.116m) 14:34:04 05 Feb 2017 UTC: INFO: QC.py(365): Changed (5/560) 211 226 227 232 237 to QC_PROBABLY_BAD because raw temperature spikes 14:34:04 05 Feb 2017 UTC: INFO: QC.py(408): Changed (5/560) 211 226 227 232 237 to QC_PROBABLY_BAD because raw conductivity spikes 14:34:04 05 Feb 2017 UTC: INFO: QC.py(180): Changed (5/560) 211 226 227 232 237 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:34:04 05 Feb 2017 UTC: INFO: QC.py(180): Changed (2/560) 559 560 to QC_BAD because changed raw cond implies changed raw salinity 14:34:04 05 Feb 2017 UTC: INFO: QC.py(365): Changed (5/560) 211 226 227 232 237 to QC_INTERPOLATED because temperature spikes 14:34:04 05 Feb 2017 UTC: INFO: QC.py(408): Changed (5/560) 211 226 227 232 237 to QC_INTERPOLATED because conductivity spikes 14:34:04 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/560) 238:243 to QC_BAD because slow apogee CT flow 14:34:04 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/560) 1:6 to QC_BAD because prior to dive start 14:34:04 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/560) 558 to QC_BAD because end of climb 14:34:04 05 Feb 2017 UTC: INFO: QC.py(488): Changed (1/560) 237 to QC_PROBABLY_BAD because bad interpolation anchors 14:34:04 05 Feb 2017 UTC: INFO: QC.py(489): SUGGESTION: 112 bad_conductivity data_points in_between 235 237 % bad interpolation anchors 14:34:04 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/560) 1:6 238:243 558:560 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:34:04 05 Feb 2017 UTC: INFO: QC.py(180): Changed (15/560) 1:6 238:243 558:560 to QC_BAD because changed corrected salin implies changed speed 14:34:05 05 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:34:05 05 Feb 2017 UTC: INFO: QC.py(180): Changed (5/560) 211 226 227 232 237 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 14:34:05 05 Feb 2017 UTC: INFO: QC.py(180): Changed (1/560) 237 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 14:34:05 05 Feb 2017 UTC: INFO: QC.py(180): Changed (5/560) 211 226 227 232 237 to QC_INTERPOLATED because changed corrected temp implies changed speed 14:34:05 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.07 cm/s 14:34:05 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.42 cm/s 14:34:05 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:34:05 05 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/560) 128:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:34:05 05 Feb 2017 UTC: INFO: QC.py(180): Changed (2/560) 211 226 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 14:34:05 05 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/560) 128:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 14:34:05 05 Feb 2017 UTC: INFO: QC.py(180): Changed (2/560) 211 226 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 14:34:05 05 Feb 2017 UTC: INFO: QC.py(180): Changed (15/560) 1:6 238:243 558:560 to QC_BAD because changed salinity implies changed optode oxygen 14:34:05 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:34:05 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 14:34:05 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 112: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.68% reduction 14:34:05 05 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.112 14:34:05 05 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:34:05 05 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:34:05 05 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:34:05 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 14:34:05 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 14:34:49 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 14:34:49 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 14:34:49 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 14:34:58 05 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:34:58 05 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:34:58 05 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:34:58 05 Feb 2017 UTC /home/sg626/p6260112.log /home/sg626/p6260112.eng /home/sg626/p6260112.asc /home/sg626/p6260112.pro /home/sg626/p6260112.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 14:34:58 05 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:34:58 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:34:58 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:34:58 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:34:58 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:34:58 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:34:58 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:34:58 05 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:34:58 05 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:34:58 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:34:58 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:34:58 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:34:58 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:34:58 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:34:58 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:34:58 05 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:34:58 05 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:34:58 05 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:34:58 05 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:34:58 05 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:34:58 05 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:34:58 05 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:34:58 05 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:34:58 05 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 14:34:58 05 Feb 2017 UTC 17:37:55 05 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 14004 17:37:55 05 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:40:42 05 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 14361 17:40:42 05 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:40:42 05 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:40:42 05 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:40:42 05 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:40:42 05 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170205074042 ] 17:40:42 05 Feb 2017 UTC: INFO: Base.py(1333): PID:14368 17:40:43 05 Feb 2017 UTC: INFO: Base.py(1375): Started processing 17:40:43 05 Feb 2017 UTC 17:40:43 05 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:40:43 05 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:40:43 05 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:40:43 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:40:43 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:113 calls_made:1 call_cycle:0 17:40:43 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:40:43 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:113 calls_made:1 call_cycle:0 17:40:43 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:40:43 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:113 calls_made:1 call_cycle:0 17:40:43 05 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:113 calls_made:1 call_cycle:0 2247.2000 -15801.7020 02/05/17 17:36:00 UTC) to sdrifter@soest.hawaii.edu 17:40:43 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:113 calls_made:1 call_cycle:0 17:40:43 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:40:43 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:113 calls_made:1 call_cycle:0 17:40:43 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:40:43 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:113 calls_made:1 call_cycle:0 17:40:43 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:40:43 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:113 calls_made:1 call_cycle:0 17:40:43 05 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:40:43 05 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:40:45 05 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:40:46 05 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:40:46 05 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:40:46 05 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:40:46 05 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:40:46 05 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:40:46 05 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0113lz 17:40:46 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0113lz.x00 17:40:46 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0113lz.x01 17:40:46 05 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0113lz.r in process_file_group 17:40:46 05 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260113.log 17:40:46 05 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:40:46 05 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0113dz 17:40:46 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0113dz.x00 17:40:46 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0113dz.x01 17:40:46 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0113dz.x02 17:40:46 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0113dz.x03 17:40:46 05 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0113dz.r in process_file_group 17:40:46 05 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [113] 17:40:46 05 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [113] 17:40:46 05 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260113) for profiles 17:40:46 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:40:46 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/570) 569 570 to QC_BAD because CT out of water 17:40:46 05 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.223m) 17:40:46 05 Feb 2017 UTC: INFO: QC.py(365): Changed (8/570) 2:4 209 236 243 246 569 to QC_PROBABLY_BAD because raw temperature spikes 17:40:46 05 Feb 2017 UTC: INFO: QC.py(377): Changed (1/570) 569 to QC_BAD because raw salinity below bound 17:40:46 05 Feb 2017 UTC: INFO: QC.py(408): Changed (2/570) 236 246 to QC_PROBABLY_BAD because raw conductivity spikes 17:40:46 05 Feb 2017 UTC: INFO: QC.py(180): Changed (7/570) 2:4 209 236 243 246 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:40:46 05 Feb 2017 UTC: INFO: QC.py(180): Changed (1/570) 570 to QC_BAD because changed raw cond implies changed raw salinity 17:40:46 05 Feb 2017 UTC: INFO: QC.py(365): Changed (8/570) 2:4 209 236 243 246 569 to QC_INTERPOLATED because temperature spikes 17:40:46 05 Feb 2017 UTC: INFO: QC.py(377): Changed (1/570) 569 to QC_BAD because salinity below bound 17:40:46 05 Feb 2017 UTC: INFO: QC.py(408): Changed (2/570) 236 246 to QC_INTERPOLATED because conductivity spikes 17:40:46 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/570) 240:245 to QC_BAD because slow apogee CT flow 17:40:46 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/570) 1:6 to QC_BAD because prior to dive start 17:40:46 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/570) 568 to QC_BAD because end of climb 17:40:46 05 Feb 2017 UTC: INFO: QC.py(488): Changed (1/570) 246 to QC_PROBABLY_BAD because bad interpolation anchors 17:40:46 05 Feb 2017 UTC: INFO: QC.py(489): SUGGESTION: 113 bad_conductivity data_points in_between 244 246 % bad interpolation anchors 17:40:46 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/570) 1:6 240:245 568:570 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:40:46 05 Feb 2017 UTC: INFO: QC.py(180): Changed (15/570) 1:6 240:245 568:570 to QC_BAD because changed corrected salin implies changed speed 17:40:47 05 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:40:47 05 Feb 2017 UTC: INFO: QC.py(180): Changed (3/570) 209 236 246 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 17:40:47 05 Feb 2017 UTC: INFO: QC.py(180): Changed (1/570) 246 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 17:40:47 05 Feb 2017 UTC: INFO: QC.py(180): Changed (3/570) 209 236 246 to QC_INTERPOLATED because changed corrected temp implies changed speed 17:40:47 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.59 cm/s 17:40:47 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.64 cm/s 17:40:47 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:40:47 05 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/570) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:40:47 05 Feb 2017 UTC: INFO: QC.py(180): Changed (6/570) 2:4 236 246 569 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:40:47 05 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/570) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:40:47 05 Feb 2017 UTC: INFO: QC.py(180): Changed (6/570) 2:4 236 246 569 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:40:47 05 Feb 2017 UTC: INFO: QC.py(180): Changed (1/570) 246 to QC_PROBABLY_BAD because changed salinity implies changed optode oxygen 17:40:47 05 Feb 2017 UTC: INFO: QC.py(180): Changed (15/570) 1:6 240:245 568:570 to QC_BAD because changed salinity implies changed optode oxygen 17:40:47 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:40:47 05 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:40:47 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:40:47 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 113: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.63% reduction 17:40:47 05 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.113 17:40:47 05 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:40:47 05 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:40:47 05 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:40:47 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:40:47 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:41:32 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 17:41:32 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:41:32 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:41:41 05 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:41:41 05 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:41:41 05 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:41:41 05 Feb 2017 UTC /home/sg626/p6260113.log /home/sg626/p6260113.eng /home/sg626/p6260113.asc /home/sg626/p6260113.pro /home/sg626/p6260113.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:41:41 05 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:41:41 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:41:41 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:41:41 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:41:41 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:41:41 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:41:41 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:41:41 05 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:41:41 05 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:41:41 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:41:41 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:41:41 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:41:41 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:41:41 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:41:41 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:41:41 05 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:41:41 05 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:41:41 05 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:41:41 05 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:41:41 05 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:41:41 05 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:41:41 05 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:41:41 05 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:41:41 05 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 17:41:41 05 Feb 2017 UTC 20:45:26 05 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 24615 20:45:26 05 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:48:15 05 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 24820 20:48:15 05 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:48:15 05 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:48:15 05 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:48:15 05 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:48:15 05 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170205104815 ] 20:48:15 05 Feb 2017 UTC: INFO: Base.py(1333): PID:24828 20:48:16 05 Feb 2017 UTC: INFO: Base.py(1375): Started processing 20:48:16 05 Feb 2017 UTC 20:48:16 05 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:48:16 05 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:48:16 05 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:48:16 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:48:16 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:114 calls_made:1 call_cycle:0 20:48:16 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:48:16 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:114 calls_made:1 call_cycle:0 20:48:16 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:48:16 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:114 calls_made:1 call_cycle:0 20:48:16 05 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:114 calls_made:1 call_cycle:0 2246.8080 -15802.2310 02/05/17 20:43:31 UTC) to sdrifter@soest.hawaii.edu 20:48:16 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:114 calls_made:1 call_cycle:0 20:48:16 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:48:16 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:114 calls_made:1 call_cycle:0 20:48:16 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:48:16 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:114 calls_made:1 call_cycle:0 20:48:16 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:48:16 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:114 calls_made:1 call_cycle:0 20:48:16 05 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:48:16 05 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:48:18 05 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:48:19 05 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:48:19 05 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:48:19 05 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:48:19 05 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:48:19 05 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:48:19 05 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0114lz 20:48:19 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0114lz.x00 20:48:19 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0114lz.x01 20:48:19 05 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0114lz.r in process_file_group 20:48:19 05 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260114.log 20:48:19 05 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:48:19 05 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0114dz 20:48:19 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0114dz.x00 20:48:19 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0114dz.x01 20:48:19 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0114dz.x02 20:48:19 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0114dz.x03 20:48:19 05 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0114dz.r in process_file_group 20:48:19 05 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [114] 20:48:19 05 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [114] 20:48:19 05 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260114) for profiles 20:48:19 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 20:48:19 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/580) 578:580 to QC_BAD because CT out of water 20:48:19 05 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.125m) 20:48:19 05 Feb 2017 UTC: INFO: QC.py(365): Changed (4/580) 228 235 261 579 to QC_PROBABLY_BAD because raw temperature spikes 20:48:19 05 Feb 2017 UTC: INFO: QC.py(377): Changed (1/580) 580 to QC_BAD because raw salinity below bound 20:48:19 05 Feb 2017 UTC: INFO: QC.py(408): Changed (3/580) 228 237 261 to QC_PROBABLY_BAD because raw conductivity spikes 20:48:19 05 Feb 2017 UTC: INFO: QC.py(180): Changed (4/580) 228 235 261 579 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 20:48:19 05 Feb 2017 UTC: INFO: QC.py(180): Changed (1/580) 237 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 20:48:19 05 Feb 2017 UTC: INFO: QC.py(180): Changed (2/580) 578 579 to QC_BAD because changed raw cond implies changed raw salinity 20:48:19 05 Feb 2017 UTC: INFO: QC.py(365): Changed (4/580) 228 235 261 579 to QC_INTERPOLATED because temperature spikes 20:48:19 05 Feb 2017 UTC: INFO: QC.py(377): Changed (1/580) 580 to QC_BAD because salinity below bound 20:48:19 05 Feb 2017 UTC: INFO: QC.py(408): Changed (3/580) 228 237 261 to QC_INTERPOLATED because conductivity spikes 20:48:19 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/580) 239:244 to QC_BAD because slow apogee CT flow 20:48:19 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/580) 1:6 to QC_BAD because prior to dive start 20:48:19 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/580) 1:6 239:244 578:580 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 20:48:19 05 Feb 2017 UTC: INFO: QC.py(180): Changed (15/580) 1:6 239:244 578:580 to QC_BAD because changed corrected salin implies changed speed 20:48:20 05 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 20:48:20 05 Feb 2017 UTC: INFO: QC.py(180): Changed (3/580) 228 235 261 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 20:48:20 05 Feb 2017 UTC: INFO: QC.py(180): Changed (1/580) 237 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 20:48:20 05 Feb 2017 UTC: INFO: QC.py(180): Changed (3/580) 228 235 261 to QC_INTERPOLATED because changed corrected temp implies changed speed 20:48:20 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.98 cm/s 20:48:20 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.51 cm/s 20:48:20 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 20:48:20 05 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/580) 133:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 20:48:20 05 Feb 2017 UTC: INFO: QC.py(180): Changed (2/580) 261 579 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 20:48:20 05 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/580) 133:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 20:48:20 05 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/580) 579 580 to QC_BAD because bad aa4330 oyxgen 20:48:20 05 Feb 2017 UTC: INFO: QC.py(180): Changed (1/580) 261 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 20:48:20 05 Feb 2017 UTC: INFO: QC.py(180): Changed (13/580) 1:6 239:244 578 to QC_BAD because changed salinity implies changed optode oxygen 20:48:20 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 20:48:20 05 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 20:48:20 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 20:48:20 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 114: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.59% reduction 20:48:20 05 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.114 20:48:20 05 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:48:20 05 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:48:20 05 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:48:21 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 20:48:21 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 20:49:05 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 20:49:06 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 20:49:06 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 20:49:15 05 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:49:15 05 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:49:15 05 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:49:15 05 Feb 2017 UTC /home/sg626/p6260114.log /home/sg626/p6260114.eng /home/sg626/p6260114.asc /home/sg626/p6260114.pro /home/sg626/p6260114.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 20:49:15 05 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:49:15 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:49:15 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:49:15 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:49:15 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:49:15 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:49:15 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:49:15 05 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:49:15 05 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:49:15 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:49:15 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:49:15 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:49:15 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:49:15 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:49:15 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:49:15 05 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:49:15 05 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:49:15 05 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:49:15 05 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:49:15 05 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:49:15 05 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:49:15 05 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:49:15 05 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:49:15 05 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 20:49:15 05 Feb 2017 UTC 23:48:30 05 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 2947 23:48:30 05 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 23:51:19 05 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 3234 23:51:19 05 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:51:19 05 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:51:19 05 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:51:19 05 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:51:19 05 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170205135119 ] 23:51:19 05 Feb 2017 UTC: INFO: Base.py(1333): PID:3242 23:51:19 05 Feb 2017 UTC: INFO: Base.py(1375): Started processing 23:51:19 05 Feb 2017 UTC 23:51:19 05 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:51:20 05 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:51:20 05 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:51:20 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:51:20 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:115 calls_made:2 call_cycle:0 23:51:20 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:51:20 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:115 calls_made:2 call_cycle:0 23:51:20 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:51:20 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:115 calls_made:2 call_cycle:0 23:51:20 05 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:115 calls_made:2 call_cycle:0 2246.5610 -15802.5450 02/05/17 23:44:14 UTC) to sdrifter@soest.hawaii.edu 23:51:20 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:115 calls_made:2 call_cycle:0 23:51:20 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:51:20 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:115 calls_made:2 call_cycle:0 23:51:20 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:51:20 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:115 calls_made:2 call_cycle:0 23:51:20 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:51:20 05 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:115 calls_made:2 call_cycle:0 23:51:20 05 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:51:20 05 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:51:22 05 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:51:22 05 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:51:22 05 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:51:22 05 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:51:22 05 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:51:22 05 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:51:23 05 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0115lz 23:51:23 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0115lz.x00 23:51:23 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0115lz.x01 23:51:23 05 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0115lz.r in process_file_group 23:51:23 05 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260115.log 23:51:23 05 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:51:23 05 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0115dz 23:51:23 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0115dz.x00 23:51:23 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0115dz.x01 23:51:23 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0115dz.x02 23:51:23 05 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0115dz.x03 23:51:23 05 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0115dz.r in process_file_group 23:51:23 05 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [115] 23:51:23 05 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [115] 23:51:23 05 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260115) for profiles 23:51:23 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 23:51:23 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/543) 543 to QC_BAD because CT out of water 23:51:23 05 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.103m) 23:51:23 05 Feb 2017 UTC: INFO: QC.py(365): Changed (1/543) 220 to QC_PROBABLY_BAD because raw temperature spikes 23:51:23 05 Feb 2017 UTC: INFO: QC.py(408): Changed (2/543) 210 220 to QC_PROBABLY_BAD because raw conductivity spikes 23:51:23 05 Feb 2017 UTC: INFO: QC.py(180): Changed (1/543) 220 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 23:51:23 05 Feb 2017 UTC: INFO: QC.py(180): Changed (1/543) 210 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 23:51:23 05 Feb 2017 UTC: INFO: QC.py(180): Changed (1/543) 543 to QC_BAD because changed raw cond implies changed raw salinity 23:51:23 05 Feb 2017 UTC: INFO: QC.py(365): Changed (1/543) 220 to QC_INTERPOLATED because temperature spikes 23:51:23 05 Feb 2017 UTC: INFO: QC.py(408): Changed (2/543) 210 220 to QC_INTERPOLATED because conductivity spikes 23:51:23 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/543) 222:227 to QC_BAD because slow apogee CT flow 23:51:23 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/543) 1:6 to QC_BAD because prior to dive start 23:51:23 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/543) 1:6 222:227 543 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 23:51:23 05 Feb 2017 UTC: INFO: QC.py(180): Changed (13/543) 1:6 222:227 543 to QC_BAD because changed corrected salin implies changed speed 23:51:24 05 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 23:51:24 05 Feb 2017 UTC: INFO: QC.py(180): Changed (1/543) 220 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 23:51:24 05 Feb 2017 UTC: INFO: QC.py(180): Changed (1/543) 210 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 23:51:24 05 Feb 2017 UTC: INFO: QC.py(180): Changed (1/543) 220 to QC_INTERPOLATED because changed corrected temp implies changed speed 23:51:24 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.40 cm/s 23:51:24 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.64 cm/s 23:51:24 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 23:51:24 05 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (156/543) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 23:51:24 05 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (156/543) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 23:51:24 05 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/543) 540 543 to QC_BAD because bad aa4330 oyxgen 23:51:24 05 Feb 2017 UTC: INFO: QC.py(180): Changed (12/543) 1:6 222:227 to QC_BAD because changed salinity implies changed optode oxygen 23:51:24 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 23:51:24 05 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 23:51:24 05 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 23:51:24 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 115: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.39% reduction 23:51:24 05 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.115 23:51:24 05 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:51:24 05 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:51:24 05 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:51:24 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 23:51:24 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 23:52:10 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 23:52:11 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 23:52:11 05 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 23:52:20 05 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:52:20 05 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:52:20 05 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:52:20 05 Feb 2017 UTC /home/sg626/p6260115.log /home/sg626/p6260115.eng /home/sg626/p6260115.asc /home/sg626/p6260115.pro /home/sg626/p6260115.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 23:52:20 05 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:52:20 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:52:20 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:52:20 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:52:20 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:52:20 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:52:20 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:52:20 05 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:52:20 05 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:52:20 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:52:20 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:52:20 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:52:20 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:52:20 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:52:20 05 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:52:20 05 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:52:20 05 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:52:20 05 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:52:20 05 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:52:20 05 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:52:20 05 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:52:20 05 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:52:20 05 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:52:20 05 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 23:52:20 05 Feb 2017 UTC 02:49:13 06 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 13101 02:49:13 06 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:52:10 06 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 13390 02:52:10 06 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:52:10 06 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:52:10 06 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:52:10 06 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:52:10 06 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170205165209 ] 02:52:10 06 Feb 2017 UTC: INFO: Base.py(1333): PID:13398 02:52:10 06 Feb 2017 UTC: INFO: Base.py(1375): Started processing 02:52:10 06 Feb 2017 UTC 02:52:10 06 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:52:10 06 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:52:10 06 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:52:10 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:52:10 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:116 calls_made:1 call_cycle:0 02:52:10 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:52:10 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:116 calls_made:1 call_cycle:0 02:52:10 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:52:10 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:116 calls_made:1 call_cycle:0 02:52:10 06 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:116 calls_made:1 call_cycle:0 2246.6410 -15802.7360 02/06/17 02:47:18 UTC) to sdrifter@soest.hawaii.edu 02:52:10 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:116 calls_made:1 call_cycle:0 02:52:10 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:52:10 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:116 calls_made:1 call_cycle:0 02:52:10 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:52:10 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:116 calls_made:1 call_cycle:0 02:52:10 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:52:10 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:116 calls_made:1 call_cycle:0 02:52:10 06 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:52:10 06 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:52:13 06 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:52:13 06 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:52:13 06 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:52:13 06 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:52:13 06 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:52:13 06 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:52:13 06 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0116lz 02:52:13 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0116lz.x00 02:52:13 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0116lz.x01 02:52:13 06 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0116lz.r in process_file_group 02:52:13 06 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260116.log 02:52:13 06 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 02:52:13 06 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0116dz 02:52:13 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0116dz.x00 02:52:13 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0116dz.x01 02:52:13 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0116dz.x02 02:52:13 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0116dz.x03 02:52:13 06 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0116dz.r in process_file_group 02:52:14 06 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [116] 02:52:14 06 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [116] 02:52:14 06 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260116) for profiles 02:52:14 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 02:52:14 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/550) 549 to QC_BAD because CT out of water 02:52:14 06 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.192m) 02:52:14 06 Feb 2017 UTC: INFO: QC.py(365): Changed (3/550) 2 3 231 to QC_PROBABLY_BAD because raw temperature spikes 02:52:14 06 Feb 2017 UTC: INFO: QC.py(180): Changed (3/550) 2 3 231 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:52:14 06 Feb 2017 UTC: INFO: QC.py(180): Changed (1/550) 549 to QC_BAD because changed raw cond implies changed raw salinity 02:52:14 06 Feb 2017 UTC: INFO: QC.py(365): Changed (3/550) 2 3 231 to QC_INTERPOLATED because temperature spikes 02:52:14 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/550) 228:233 to QC_BAD because slow apogee CT flow 02:52:14 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/550) 1:6 to QC_BAD because prior to dive start 02:52:14 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/550) 548 550 to QC_BAD because end of climb 02:52:14 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/550) 1:6 228:233 548:550 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:52:14 06 Feb 2017 UTC: INFO: QC.py(180): Changed (15/550) 1:6 228:233 548:550 to QC_BAD because changed corrected salin implies changed speed 02:52:14 06 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:52:14 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.92 cm/s 02:52:14 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.58 cm/s 02:52:14 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:52:14 06 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (154/550) 124 125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:52:14 06 Feb 2017 UTC: INFO: QC.py(180): Changed (3/550) 2 3 231 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:52:14 06 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (154/550) 124 125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 02:52:14 06 Feb 2017 UTC: INFO: QC.py(180): Changed (3/550) 2 3 231 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:52:14 06 Feb 2017 UTC: INFO: QC.py(180): Changed (15/550) 1:6 228:233 548:550 to QC_BAD because changed salinity implies changed optode oxygen 02:52:14 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:52:14 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 02:52:15 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 116: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.73% reduction 02:52:15 06 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.116 02:52:15 06 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:52:15 06 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:52:15 06 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:52:15 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 02:52:15 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 02:53:01 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 02:53:02 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 02:53:02 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 02:53:11 06 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:53:11 06 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:53:11 06 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:53:11 06 Feb 2017 UTC /home/sg626/p6260116.log /home/sg626/p6260116.eng /home/sg626/p6260116.asc /home/sg626/p6260116.pro /home/sg626/p6260116.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 02:53:11 06 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:53:11 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:53:11 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:53:11 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:53:11 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:53:11 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:53:11 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:53:11 06 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:53:11 06 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:53:11 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:53:11 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:53:11 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:53:11 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:53:11 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:53:11 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:53:11 06 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:53:11 06 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:53:11 06 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:53:11 06 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:53:11 06 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:53:11 06 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:53:11 06 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:53:11 06 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:53:11 06 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 02:53:11 06 Feb 2017 UTC 05:56:53 06 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 25122 05:56:53 06 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:59:30 06 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 25386 05:59:30 06 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:59:30 06 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:59:30 06 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:59:30 06 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:59:30 06 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170205195929 ] 05:59:30 06 Feb 2017 UTC: INFO: Base.py(1333): PID:25394 05:59:30 06 Feb 2017 UTC: INFO: Base.py(1375): Started processing 05:59:30 06 Feb 2017 UTC 05:59:30 06 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:59:31 06 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:59:31 06 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:59:31 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:59:31 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:117 calls_made:1 call_cycle:0 05:59:31 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:59:31 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:117 calls_made:1 call_cycle:0 05:59:31 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:59:31 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:117 calls_made:1 call_cycle:0 05:59:31 06 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:117 calls_made:1 call_cycle:0 2246.4520 -15802.7220 02/06/17 05:54:59 UTC) to sdrifter@soest.hawaii.edu 05:59:31 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:117 calls_made:1 call_cycle:0 05:59:31 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:59:31 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:117 calls_made:1 call_cycle:0 05:59:31 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:59:31 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:117 calls_made:1 call_cycle:0 05:59:31 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:59:31 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:117 calls_made:1 call_cycle:0 05:59:31 06 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:59:31 06 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:59:33 06 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:59:33 06 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:59:33 06 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:59:33 06 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:59:33 06 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:59:33 06 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:59:34 06 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0117lz 05:59:34 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0117lz.x00 05:59:34 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0117lz.x01 05:59:34 06 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0117lz.r in process_file_group 05:59:34 06 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260117.log 05:59:34 06 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:59:34 06 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0117dz 05:59:34 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0117dz.x00 05:59:34 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0117dz.x01 05:59:34 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0117dz.x02 05:59:34 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0117dz.x03 05:59:34 06 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0117dz.r in process_file_group 05:59:34 06 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [117] 05:59:34 06 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [117] 05:59:34 06 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260117) for profiles 05:59:34 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:59:34 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/567) 567 to QC_BAD because CT out of water 05:59:34 06 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.237m) 05:59:34 06 Feb 2017 UTC: INFO: QC.py(365): Changed (6/567) 2 192 216 234 244 246 to QC_PROBABLY_BAD because raw temperature spikes 05:59:34 06 Feb 2017 UTC: INFO: QC.py(377): Changed (1/567) 567 to QC_BAD because raw salinity below bound 05:59:34 06 Feb 2017 UTC: INFO: QC.py(408): Changed (5/567) 192 203 216 244 258 to QC_PROBABLY_BAD because raw conductivity spikes 05:59:34 06 Feb 2017 UTC: INFO: QC.py(180): Changed (6/567) 2 192 216 234 244 246 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:59:34 06 Feb 2017 UTC: INFO: QC.py(180): Changed (2/567) 203 258 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 05:59:34 06 Feb 2017 UTC: INFO: QC.py(365): Changed (6/567) 2 192 216 234 244 246 to QC_INTERPOLATED because temperature spikes 05:59:34 06 Feb 2017 UTC: INFO: QC.py(377): Changed (1/567) 567 to QC_BAD because salinity below bound 05:59:34 06 Feb 2017 UTC: INFO: QC.py(408): Changed (5/567) 192 203 216 244 258 to QC_INTERPOLATED because conductivity spikes 05:59:34 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/567) 231:236 to QC_BAD because slow apogee CT flow 05:59:34 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/567) 1:6 to QC_BAD because prior to dive start 05:59:34 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/567) 566 to QC_BAD because end of climb 05:59:34 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/567) 1:6 231:236 566 567 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:59:34 06 Feb 2017 UTC: INFO: QC.py(180): Changed (14/567) 1:6 231:236 566 567 to QC_BAD because changed corrected salin implies changed speed 05:59:35 06 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:59:35 06 Feb 2017 UTC: INFO: QC.py(180): Changed (4/567) 192 216 244 246 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 05:59:35 06 Feb 2017 UTC: INFO: QC.py(180): Changed (2/567) 203 258 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 05:59:35 06 Feb 2017 UTC: INFO: QC.py(180): Changed (4/567) 192 216 244 246 to QC_INTERPOLATED because changed corrected temp implies changed speed 05:59:35 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.30 cm/s 05:59:35 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.60 cm/s 05:59:35 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:59:35 06 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/567) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:59:35 06 Feb 2017 UTC: INFO: QC.py(180): Changed (3/567) 2 216 246 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:59:35 06 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/567) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:59:35 06 Feb 2017 UTC: INFO: QC.py(180): Changed (3/567) 2 216 246 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:59:35 06 Feb 2017 UTC: INFO: QC.py(180): Changed (14/567) 1:6 231:236 566 567 to QC_BAD because changed salinity implies changed optode oxygen 05:59:35 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:59:35 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 05:59:35 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 117: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.47% reduction 05:59:35 06 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.117 05:59:35 06 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:59:35 06 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:59:35 06 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:59:35 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 05:59:35 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 06:00:22 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 06:00:23 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 06:00:23 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 06:00:32 06 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:00:32 06 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:00:32 06 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 06:00:32 06 Feb 2017 UTC /home/sg626/p6260117.log /home/sg626/p6260117.eng /home/sg626/p6260117.asc /home/sg626/p6260117.pro /home/sg626/p6260117.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 06:00:32 06 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:00:32 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:00:32 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:00:32 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:00:32 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:00:32 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:00:32 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:00:32 06 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:00:32 06 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:00:32 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:00:32 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:00:32 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:00:32 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:00:32 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:00:32 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:00:32 06 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:00:32 06 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 06:00:32 06 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 06:00:32 06 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 06:00:32 06 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 06:00:32 06 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:00:32 06 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:00:32 06 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:00:32 06 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 06:00:32 06 Feb 2017 UTC 09:04:56 06 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 32343 09:04:56 06 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:07:44 06 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 32466 09:07:44 06 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:07:44 06 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:07:44 06 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:07:44 06 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:07:44 06 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170205230743 ] 09:07:44 06 Feb 2017 UTC: INFO: Base.py(1333): PID:32473 09:07:44 06 Feb 2017 UTC: INFO: Base.py(1375): Started processing 09:07:44 06 Feb 2017 UTC 09:07:44 06 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:07:45 06 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:07:45 06 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:07:45 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:07:45 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:118 calls_made:2 call_cycle:0 09:07:45 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:07:45 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:118 calls_made:2 call_cycle:0 09:07:45 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:07:45 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:118 calls_made:2 call_cycle:0 09:07:45 06 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:118 calls_made:2 call_cycle:0 2246.1550 -15802.9690 02/06/17 09:00:40 UTC) to sdrifter@soest.hawaii.edu 09:07:45 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:118 calls_made:2 call_cycle:0 09:07:45 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:07:45 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:118 calls_made:2 call_cycle:0 09:07:45 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:07:45 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:118 calls_made:2 call_cycle:0 09:07:45 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:07:45 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:118 calls_made:2 call_cycle:0 09:07:45 06 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:07:45 06 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:07:47 06 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:07:47 06 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:07:47 06 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:07:47 06 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:07:47 06 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:07:47 06 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:07:48 06 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0118lz 09:07:48 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0118lz.x00 09:07:48 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0118lz.x01 09:07:48 06 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0118lz.r in process_file_group 09:07:48 06 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260118.log 09:07:48 06 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:07:48 06 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0118dz 09:07:48 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0118dz.x00 09:07:48 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0118dz.x01 09:07:48 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0118dz.x02 09:07:48 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0118dz.x03 09:07:48 06 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0118dz.r in process_file_group 09:07:48 06 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [118] 09:07:48 06 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [118] 09:07:48 06 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260118) for profiles 09:07:48 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 09:07:48 06 Feb 2017 UTC: INFO: QC.py(365): Changed (8/567) 2 3 197 205 209:211 245 to QC_PROBABLY_BAD because raw temperature spikes 09:07:48 06 Feb 2017 UTC: INFO: QC.py(408): Changed (6/567) 205 209:211 240 245 to QC_PROBABLY_BAD because raw conductivity spikes 09:07:48 06 Feb 2017 UTC: INFO: QC.py(180): Changed (8/567) 2 3 197 205 209:211 245 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 09:07:48 06 Feb 2017 UTC: INFO: QC.py(180): Changed (1/567) 240 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 09:07:48 06 Feb 2017 UTC: INFO: QC.py(365): Changed (8/567) 2 3 197 205 209:211 245 to QC_INTERPOLATED because temperature spikes 09:07:48 06 Feb 2017 UTC: INFO: QC.py(408): Changed (6/567) 205 209:211 240 245 to QC_INTERPOLATED because conductivity spikes 09:07:48 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/567) 224:229 to QC_BAD because slow apogee CT flow 09:07:48 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/567) 1:6 to QC_BAD because prior to dive start 09:07:48 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/567) 1:6 224:229 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:07:48 06 Feb 2017 UTC: INFO: QC.py(180): Changed (12/567) 1:6 224:229 to QC_BAD because changed corrected salin implies changed speed 09:07:49 06 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:07:49 06 Feb 2017 UTC: INFO: QC.py(180): Changed (6/567) 197 205 209:211 245 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 09:07:49 06 Feb 2017 UTC: INFO: QC.py(180): Changed (1/567) 240 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 09:07:49 06 Feb 2017 UTC: INFO: QC.py(180): Changed (6/567) 197 205 209:211 245 to QC_INTERPOLATED because changed corrected temp implies changed speed 09:07:49 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.49 cm/s 09:07:49 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.90 cm/s 09:07:49 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:07:49 06 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/567) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:07:49 06 Feb 2017 UTC: INFO: QC.py(180): Changed (3/567) 2 3 211 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:07:49 06 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/567) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 09:07:49 06 Feb 2017 UTC: INFO: QC.py(180): Changed (3/567) 2 3 211 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:07:49 06 Feb 2017 UTC: INFO: QC.py(180): Changed (12/567) 1:6 224:229 to QC_BAD because changed salinity implies changed optode oxygen 09:07:49 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:07:49 06 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:07:49 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 09:07:49 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 118: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.12% reduction 09:07:49 06 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.118 09:07:49 06 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:07:49 06 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:07:49 06 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:07:49 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 09:07:49 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 09:08:37 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 09:08:37 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 09:08:37 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 09:08:46 06 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:08:46 06 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:08:46 06 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:08:46 06 Feb 2017 UTC /home/sg626/p6260118.log /home/sg626/p6260118.eng /home/sg626/p6260118.asc /home/sg626/p6260118.pro /home/sg626/p6260118.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 09:08:46 06 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:08:46 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:08:46 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:08:46 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:08:46 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:08:46 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:08:46 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:08:46 06 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:08:46 06 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:08:46 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:08:46 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:08:46 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:08:46 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:08:46 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:08:46 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:08:46 06 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:08:46 06 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:08:46 06 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:08:46 06 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:08:46 06 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:08:46 06 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:08:46 06 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:08:46 06 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:08:46 06 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 09:08:46 06 Feb 2017 UTC 12:13:58 06 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 5899 12:13:58 06 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:16:32 06 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 6006 12:16:32 06 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:16:32 06 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:16:32 06 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:16:32 06 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:16:32 06 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170206021632 ] 12:16:32 06 Feb 2017 UTC: INFO: Base.py(1333): PID:6014 12:16:32 06 Feb 2017 UTC: INFO: Base.py(1375): Started processing 12:16:32 06 Feb 2017 UTC 12:16:32 06 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:16:33 06 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:16:33 06 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:16:33 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:16:33 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:119 calls_made:1 call_cycle:0 12:16:33 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:16:33 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:119 calls_made:1 call_cycle:0 12:16:33 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:16:33 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:119 calls_made:1 call_cycle:0 12:16:33 06 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:119 calls_made:1 call_cycle:0 2246.4630 -15802.0050 02/06/17 12:11:54 UTC) to sdrifter@soest.hawaii.edu 12:16:33 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:119 calls_made:1 call_cycle:0 12:16:33 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:16:33 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:119 calls_made:1 call_cycle:0 12:16:33 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:16:33 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:119 calls_made:1 call_cycle:0 12:16:33 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:16:33 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:119 calls_made:1 call_cycle:0 12:16:33 06 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:16:33 06 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:16:35 06 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:16:35 06 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:16:35 06 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:16:35 06 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:16:35 06 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:16:35 06 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:16:36 06 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0119lz 12:16:36 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0119lz.x00 12:16:36 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0119lz.x01 12:16:36 06 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0119lz.r in process_file_group 12:16:36 06 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260119.log 12:16:36 06 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:16:36 06 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0119dz 12:16:36 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0119dz.x00 12:16:36 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0119dz.x01 12:16:36 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0119dz.x02 12:16:36 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0119dz.x03 12:16:36 06 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0119dz.r in process_file_group 12:16:36 06 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [119] 12:16:36 06 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [119] 12:16:36 06 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260119) for profiles 12:16:36 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 12:16:36 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/577) 576 577 to QC_BAD because CT out of water 12:16:36 06 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.140m) 12:16:36 06 Feb 2017 UTC: INFO: QC.py(365): Changed (5/577) 2 213 218 222 240 to QC_PROBABLY_BAD because raw temperature spikes 12:16:36 06 Feb 2017 UTC: INFO: QC.py(408): Changed (2/577) 218 240 to QC_PROBABLY_BAD because raw conductivity spikes 12:16:36 06 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <179 pt uncorrectable 890.7m SUSPECT weak conductivity anomaly n:-0.29 p:0.26> 12:16:36 06 Feb 2017 UTC: INFO: QC.py(180): Changed (5/577) 2 213 218 222 240 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 12:16:36 06 Feb 2017 UTC: INFO: QC.py(180): Changed (2/577) 576 577 to QC_BAD because changed raw cond implies changed raw salinity 12:16:36 06 Feb 2017 UTC: INFO: QC.py(365): Changed (5/577) 2 213 218 222 240 to QC_INTERPOLATED because temperature spikes 12:16:36 06 Feb 2017 UTC: INFO: QC.py(408): Changed (2/577) 218 240 to QC_INTERPOLATED because conductivity spikes 12:16:36 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/577) 227:232 to QC_BAD because slow apogee CT flow 12:16:36 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/577) 1:6 to QC_BAD because prior to dive start 12:16:36 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/577) 575 to QC_BAD because end of climb 12:16:36 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/577) 1:6 227:232 575:577 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:16:36 06 Feb 2017 UTC: INFO: QC.py(180): Changed (15/577) 1:6 227:232 575:577 to QC_BAD because changed corrected salin implies changed speed 12:16:37 06 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:16:37 06 Feb 2017 UTC: INFO: QC.py(180): Changed (4/577) 213 218 222 240 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 12:16:37 06 Feb 2017 UTC: INFO: QC.py(180): Changed (4/577) 213 218 222 240 to QC_INTERPOLATED because changed corrected temp implies changed speed 12:16:37 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.28 cm/s 12:16:37 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.61 cm/s 12:16:37 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:16:37 06 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/577) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:16:37 06 Feb 2017 UTC: INFO: QC.py(180): Changed (1/577) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 12:16:37 06 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/577) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 12:16:37 06 Feb 2017 UTC: INFO: QC.py(180): Changed (1/577) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 12:16:37 06 Feb 2017 UTC: INFO: QC.py(180): Changed (15/577) 1:6 227:232 575:577 to QC_BAD because changed salinity implies changed optode oxygen 12:16:37 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:16:37 06 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:16:37 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 12:16:37 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 119: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.60% reduction 12:16:37 06 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.119 12:16:37 06 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:16:37 06 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:16:37 06 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:16:37 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 12:16:37 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 12:17:25 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 12:17:25 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 12:17:25 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 12:17:34 06 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:17:34 06 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:17:34 06 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 12:17:34 06 Feb 2017 UTC /home/sg626/p6260119.log /home/sg626/p6260119.eng /home/sg626/p6260119.asc /home/sg626/p6260119.pro /home/sg626/p6260119.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 12:17:34 06 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:17:34 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:17:34 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:17:34 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:17:34 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:17:34 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:17:34 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:17:34 06 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:17:34 06 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:17:34 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:17:34 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:17:34 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:17:34 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:17:34 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:17:34 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:17:34 06 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:17:34 06 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 12:17:34 06 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 12:17:34 06 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 12:17:34 06 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 12:17:34 06 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:17:34 06 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:17:34 06 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:17:34 06 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 12:17:34 06 Feb 2017 UTC 15:21:40 06 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 11185 15:21:40 06 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 15:24:47 06 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 11309 15:24:47 06 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 15:24:47 06 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 15:24:47 06 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 15:24:47 06 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 15:24:47 06 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170206052447 ] 15:24:47 06 Feb 2017 UTC: INFO: Base.py(1333): PID:11317 15:24:47 06 Feb 2017 UTC: INFO: Base.py(1375): Started processing 15:24:47 06 Feb 2017 UTC 15:24:47 06 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 15:24:48 06 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 15:24:48 06 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 15:24:48 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:24:48 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:120 calls_made:1 call_cycle:0 15:24:48 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:24:48 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:120 calls_made:1 call_cycle:0 15:24:48 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:24:48 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:120 calls_made:1 call_cycle:0 15:24:48 06 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:120 calls_made:1 call_cycle:0 2246.3500 -15802.4040 02/06/17 15:19:43 UTC) to sdrifter@soest.hawaii.edu 15:24:48 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:120 calls_made:1 call_cycle:0 15:24:48 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:24:48 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:120 calls_made:1 call_cycle:0 15:24:48 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:24:48 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:120 calls_made:1 call_cycle:0 15:24:48 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:24:48 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:120 calls_made:1 call_cycle:0 15:24:48 06 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:24:48 06 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 15:24:50 06 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 15:24:51 06 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 15:24:51 06 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 15:24:51 06 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 15:24:51 06 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 15:24:51 06 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 15:24:51 06 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0120lz 15:24:51 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0120lz.x00 15:24:51 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0120lz.x01 15:24:51 06 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0120lz.r in process_file_group 15:24:51 06 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260120.log 15:24:51 06 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 15:24:51 06 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0120dz 15:24:51 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0120dz.x00 15:24:51 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0120dz.x01 15:24:51 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0120dz.x02 15:24:51 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0120dz.x03 15:24:51 06 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0120dz.r in process_file_group 15:24:51 06 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [120] 15:24:51 06 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [120] 15:24:51 06 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260120) for profiles 15:24:51 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 15:24:51 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/579) 577:579 to QC_BAD because CT out of water 15:24:51 06 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.296m) 15:24:52 06 Feb 2017 UTC: INFO: QC.py(365): Changed (4/579) 3 246 247 578 to QC_PROBABLY_BAD because raw temperature spikes 15:24:52 06 Feb 2017 UTC: INFO: QC.py(408): Changed (3/579) 223 246 247 to QC_PROBABLY_BAD because raw conductivity spikes 15:24:52 06 Feb 2017 UTC: INFO: QC.py(180): Changed (4/579) 3 246 247 578 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 15:24:52 06 Feb 2017 UTC: INFO: QC.py(180): Changed (1/579) 223 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 15:24:52 06 Feb 2017 UTC: INFO: QC.py(180): Changed (3/579) 577:579 to QC_BAD because changed raw cond implies changed raw salinity 15:24:52 06 Feb 2017 UTC: INFO: QC.py(365): Changed (4/579) 3 246 247 578 to QC_INTERPOLATED because temperature spikes 15:24:52 06 Feb 2017 UTC: INFO: QC.py(408): Changed (3/579) 223 246 247 to QC_INTERPOLATED because conductivity spikes 15:24:52 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/579) 232:237 to QC_BAD because slow apogee CT flow 15:24:52 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/579) 1:6 to QC_BAD because prior to dive start 15:24:52 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/579) 1:6 232:237 577:579 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 15:24:52 06 Feb 2017 UTC: INFO: QC.py(180): Changed (15/579) 1:6 232:237 577:579 to QC_BAD because changed corrected salin implies changed speed 15:24:52 06 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 15:24:52 06 Feb 2017 UTC: INFO: QC.py(180): Changed (2/579) 246 247 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 15:24:52 06 Feb 2017 UTC: INFO: QC.py(180): Changed (1/579) 223 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 15:24:52 06 Feb 2017 UTC: INFO: QC.py(180): Changed (2/579) 246 247 to QC_INTERPOLATED because changed corrected temp implies changed speed 15:24:52 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.51 cm/s 15:24:52 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.57 cm/s 15:24:52 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 15:24:52 06 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/579) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 15:24:52 06 Feb 2017 UTC: INFO: QC.py(180): Changed (3/579) 3 246 578 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 15:24:52 06 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/579) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 15:24:52 06 Feb 2017 UTC: INFO: QC.py(180): Changed (3/579) 3 246 578 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 15:24:52 06 Feb 2017 UTC: INFO: QC.py(180): Changed (15/579) 1:6 232:237 577:579 to QC_BAD because changed salinity implies changed optode oxygen 15:24:52 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 15:24:52 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 15:24:53 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 120: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.59% reduction 15:24:53 06 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.120 15:24:53 06 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 15:24:53 06 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 15:24:53 06 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 15:24:53 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 15:24:53 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 15:25:40 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 15:25:41 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 15:25:41 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 15:25:50 06 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 15:25:50 06 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 15:25:50 06 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 15:25:50 06 Feb 2017 UTC /home/sg626/p6260120.log /home/sg626/p6260120.eng /home/sg626/p6260120.asc /home/sg626/p6260120.pro /home/sg626/p6260120.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 15:25:50 06 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 15:25:50 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:25:50 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:25:50 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:25:50 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:25:50 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:25:50 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:25:50 06 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:25:50 06 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 15:25:50 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:25:50 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:25:50 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:25:50 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:25:50 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:25:50 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:25:50 06 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:25:50 06 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 15:25:50 06 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 15:25:50 06 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 15:25:50 06 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 15:25:50 06 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 15:25:50 06 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 15:25:50 06 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 15:25:50 06 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 15:25:50 06 Feb 2017 UTC 18:32:43 06 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 16948 18:32:43 06 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 18:35:52 06 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 17068 18:35:52 06 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:35:52 06 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 18:35:52 06 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 18:35:52 06 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:35:52 06 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170206083552 ] 18:35:52 06 Feb 2017 UTC: INFO: Base.py(1333): PID:17076 18:35:52 06 Feb 2017 UTC: INFO: Base.py(1375): Started processing 18:35:52 06 Feb 2017 UTC 18:35:52 06 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 18:35:53 06 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 18:35:53 06 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:35:53 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:35:53 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:121 calls_made:1 call_cycle:0 18:35:53 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:35:53 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:121 calls_made:1 call_cycle:0 18:35:53 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:35:53 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:121 calls_made:1 call_cycle:0 18:35:53 06 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:121 calls_made:1 call_cycle:0 2246.2510 -15801.7910 02/06/17 18:30:30 UTC) to sdrifter@soest.hawaii.edu 18:35:53 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:121 calls_made:1 call_cycle:0 18:35:53 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:35:53 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:121 calls_made:1 call_cycle:0 18:35:53 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:35:53 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:121 calls_made:1 call_cycle:0 18:35:53 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:35:53 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:121 calls_made:1 call_cycle:0 18:35:53 06 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:35:53 06 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:35:55 06 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:35:55 06 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:35:55 06 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 18:35:55 06 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:35:55 06 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:35:55 06 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 18:35:56 06 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0121lz 18:35:56 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0121lz.x00 18:35:56 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0121lz.x01 18:35:56 06 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0121lz.r in process_file_group 18:35:56 06 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260121.log 18:35:56 06 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 18:35:56 06 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0121dz 18:35:56 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0121dz.x00 18:35:56 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0121dz.x01 18:35:56 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0121dz.x02 18:35:56 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0121dz.x03 18:35:56 06 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0121dz.r in process_file_group 18:35:56 06 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [121] 18:35:56 06 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [121] 18:35:56 06 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260121) for profiles 18:35:56 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 18:35:56 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/589) 588 589 to QC_BAD because CT out of water 18:35:56 06 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.123m) 18:35:56 06 Feb 2017 UTC: INFO: QC.py(365): Changed (6/589) 3 210 212 232 242 252 to QC_PROBABLY_BAD because raw temperature spikes 18:35:56 06 Feb 2017 UTC: INFO: QC.py(377): Changed (1/589) 588 to QC_BAD because raw salinity below bound 18:35:56 06 Feb 2017 UTC: INFO: QC.py(408): Changed (3/589) 212 232 252 to QC_PROBABLY_BAD because raw conductivity spikes 18:35:56 06 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <191 pt uncorrectable 949.8m SUSPECT weak conductivity anomaly n:-0.31 p:0.29> 18:35:56 06 Feb 2017 UTC: INFO: QC.py(180): Changed (6/589) 3 210 212 232 242 252 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 18:35:56 06 Feb 2017 UTC: INFO: QC.py(180): Changed (1/589) 589 to QC_BAD because changed raw cond implies changed raw salinity 18:35:56 06 Feb 2017 UTC: INFO: QC.py(365): Changed (6/589) 3 210 212 232 242 252 to QC_INTERPOLATED because temperature spikes 18:35:56 06 Feb 2017 UTC: INFO: QC.py(377): Changed (1/589) 588 to QC_BAD because salinity below bound 18:35:56 06 Feb 2017 UTC: INFO: QC.py(408): Changed (3/589) 212 232 252 to QC_INTERPOLATED because conductivity spikes 18:35:56 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/589) 234:239 to QC_BAD because slow apogee CT flow 18:35:56 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/589) 1:6 to QC_BAD because prior to dive start 18:35:56 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/589) 1:6 234:239 588 589 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 18:35:56 06 Feb 2017 UTC: INFO: QC.py(180): Changed (14/589) 1:6 234:239 588 589 to QC_BAD because changed corrected salin implies changed speed 18:35:57 06 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 18:35:57 06 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 121 interp_salinity data_points in_between 340 350 % suspect thermal-inertia points 343 18:35:57 06 Feb 2017 UTC: INFO: QC.py(180): Changed (5/589) 210 212 232 242 252 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 18:35:57 06 Feb 2017 UTC: INFO: QC.py(180): Changed (5/589) 210 212 232 242 252 to QC_INTERPOLATED because changed corrected temp implies changed speed 18:35:57 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.90 cm/s 18:35:57 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.34 cm/s 18:35:57 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 18:35:57 06 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (163/589) 123:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 18:35:57 06 Feb 2017 UTC: INFO: QC.py(180): Changed (1/589) 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 18:35:57 06 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (163/589) 123:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 18:35:57 06 Feb 2017 UTC: INFO: QC.py(180): Changed (1/589) 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 18:35:57 06 Feb 2017 UTC: INFO: QC.py(180): Changed (14/589) 1:6 234:239 588 589 to QC_BAD because changed salinity implies changed optode oxygen 18:35:57 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 18:35:57 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 18:35:57 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 121: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.38% reduction 18:35:57 06 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.121 18:35:57 06 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:35:57 06 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:35:57 06 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:35:57 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 18:35:57 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 18:36:46 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 18:36:47 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 18:36:47 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 18:36:56 06 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:36:56 06 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:36:56 06 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:36:56 06 Feb 2017 UTC /home/sg626/p6260121.log /home/sg626/p6260121.eng /home/sg626/p6260121.asc /home/sg626/p6260121.pro /home/sg626/p6260121.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 18:36:56 06 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:36:56 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:36:56 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:36:56 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:36:56 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:36:56 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:36:56 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:36:56 06 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:36:56 06 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:36:56 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:36:56 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:36:56 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:36:56 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:36:56 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:36:56 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:36:56 06 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:36:56 06 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 18:36:56 06 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 18:36:56 06 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 18:36:56 06 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 18:36:56 06 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:36:56 06 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:36:56 06 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:36:56 06 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 18:36:56 06 Feb 2017 UTC 21:38:28 06 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 22539 21:38:28 06 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:40:39 06 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 22810 21:40:39 06 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:40:39 06 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:40:39 06 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:40:39 06 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:40:39 06 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170206114038 ] 21:40:39 06 Feb 2017 UTC: INFO: Base.py(1333): PID:22818 21:40:39 06 Feb 2017 UTC: INFO: Base.py(1375): Started processing 21:40:39 06 Feb 2017 UTC 21:40:39 06 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:40:39 06 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:40:39 06 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:40:39 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:40:39 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:122 calls_made:1 call_cycle:0 21:40:39 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:40:39 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:122 calls_made:1 call_cycle:0 21:40:39 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:40:39 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:122 calls_made:1 call_cycle:0 21:40:39 06 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:122 calls_made:1 call_cycle:0 2245.9320 -15802.3590 02/06/17 21:36:31 UTC) to sdrifter@soest.hawaii.edu 21:40:39 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:122 calls_made:1 call_cycle:0 21:40:39 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:40:39 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:122 calls_made:1 call_cycle:0 21:40:39 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:40:39 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:122 calls_made:1 call_cycle:0 21:40:39 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:40:39 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:122 calls_made:1 call_cycle:0 21:40:39 06 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:40:39 06 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:40:42 06 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:40:42 06 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:40:42 06 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:40:42 06 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:40:42 06 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:40:42 06 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:40:42 06 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0122lz 21:40:42 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0122lz.x00 21:40:42 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0122lz.x01 21:40:42 06 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0122lz.r in process_file_group 21:40:42 06 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260122.log 21:40:42 06 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:40:42 06 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0122dz 21:40:42 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0122dz.x00 21:40:42 06 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0122dz.r in process_file_group 21:40:42 06 Feb 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0122dz.r - expected 0x2460762763, generated 0x24657ddb 21:40:42 06 Feb 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0122dz.r - expected 0x27b6886, generated 0x3081 21:40:42 06 Feb 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0122dz.r - skipping 21:40:42 06 Feb 2017 UTC: ERROR: Base.py(272): Could not process sg0122dz - skipping 21:40:42 06 Feb 2017 UTC: WARNING: Base.py(1624): No dives to process 21:40:42 06 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [122] 21:40:42 06 Feb 2017 UTC: INFO: Base.py(1780): No dives found to profile 21:40:42 06 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.122 21:40:42 06 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:40:42 06 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:40:42 06 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:40:42 06 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:40:42 06 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:40:42 06 Feb 2017 UTC: ERROR: Base.py(1960): Dive [122] failed to process completely. The following files were not processed completely: /home/sg626/sg0122dz.r Glider logout seen - transmissions from glider complete Consult baselog_170206114038 for details. 21:40:42 06 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:40:42 06 Feb 2017 UTC /home/sg626/p6260122.log 21:40:42 06 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:40:42 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:40:42 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:40:42 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:40:42 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:40:42 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:40:42 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:40:42 06 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:40:42 06 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:40:42 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:40:42 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:40:42 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:40:42 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:40:42 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:40:42 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:40:42 06 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:40:42 06 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:40:42 06 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:40:42 06 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:40:42 06 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:40:42 06 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:40:42 06 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:40:42 06 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:40:42 06 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 21:40:42 06 Feb 2017 UTC 21:42:55 06 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 23147 21:42:55 06 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:44:40 06 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 23307 21:44:40 06 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:44:40 06 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:44:40 06 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:44:40 06 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:44:40 06 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170206114440 ] 21:44:40 06 Feb 2017 UTC: INFO: Base.py(1333): PID:23315 21:44:40 06 Feb 2017 UTC: INFO: Base.py(1375): Started processing 21:44:40 06 Feb 2017 UTC 21:44:40 06 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:44:41 06 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:44:41 06 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:44:41 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:44:41 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:122 calls_made:2 call_cycle:0 21:44:41 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:44:41 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:122 calls_made:2 call_cycle:0 21:44:41 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:44:41 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:122 calls_made:2 call_cycle:0 21:44:41 06 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:122 calls_made:2 call_cycle:0 2245.9320 -15802.3590 02/06/17 21:36:31 UTC) to sdrifter@soest.hawaii.edu 21:44:41 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:122 calls_made:2 call_cycle:0 21:44:41 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:44:41 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:122 calls_made:2 call_cycle:0 21:44:41 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:44:41 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:122 calls_made:2 call_cycle:0 21:44:41 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:44:41 06 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:122 calls_made:2 call_cycle:0 21:44:41 06 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:44:41 06 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:44:43 06 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:44:43 06 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:44:43 06 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:44:43 06 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:44:43 06 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:44:43 06 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:44:44 06 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:44:44 06 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0122dz 21:44:44 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0122dz.x00 21:44:44 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0122dz.x01 21:44:44 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0122dz.x02 21:44:44 06 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0122dz.x03 21:44:44 06 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0122dz.r in process_file_group 21:44:44 06 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [122] 21:44:44 06 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [122] 21:44:44 06 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260122) for profiles 21:44:44 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:44:44 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/572) 571 572 to QC_BAD because CT out of water 21:44:44 06 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.117m) 21:44:44 06 Feb 2017 UTC: INFO: QC.py(365): Changed (7/572) 3 5 225 230 245 324 325 to QC_PROBABLY_BAD because raw temperature spikes 21:44:44 06 Feb 2017 UTC: INFO: QC.py(408): Changed (3/572) 3 225 233 to QC_PROBABLY_BAD because raw conductivity spikes 21:44:44 06 Feb 2017 UTC: INFO: QC.py(180): Changed (7/572) 3 5 225 230 245 324 325 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:44:44 06 Feb 2017 UTC: INFO: QC.py(180): Changed (1/572) 233 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 21:44:44 06 Feb 2017 UTC: INFO: QC.py(180): Changed (2/572) 571 572 to QC_BAD because changed raw cond implies changed raw salinity 21:44:44 06 Feb 2017 UTC: INFO: QC.py(365): Changed (7/572) 3 5 225 230 245 324 325 to QC_INTERPOLATED because temperature spikes 21:44:44 06 Feb 2017 UTC: INFO: QC.py(408): Changed (3/572) 3 225 233 to QC_INTERPOLATED because conductivity spikes 21:44:44 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/572) 227:232 to QC_BAD because slow apogee CT flow 21:44:44 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/572) 1:6 to QC_BAD because prior to dive start 21:44:44 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/572) 570 to QC_BAD because end of climb 21:44:44 06 Feb 2017 UTC: INFO: QC.py(488): Changed (1/572) 233 to QC_PROBABLY_BAD because bad interpolation anchors 21:44:44 06 Feb 2017 UTC: INFO: QC.py(489): SUGGESTION: 122 bad_conductivity data_points in_between 231 233 % bad interpolation anchors 21:44:44 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/572) 1:6 227:232 570:572 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:44:44 06 Feb 2017 UTC: INFO: QC.py(180): Changed (15/572) 1:6 227:232 570:572 to QC_BAD because changed corrected salin implies changed speed 21:44:45 06 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:44:45 06 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 122 interp_salinity data_points in_between 343 351 % suspect thermal-inertia points 346 21:44:45 06 Feb 2017 UTC: INFO: QC.py(180): Changed (4/572) 225 245 324 325 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 21:44:45 06 Feb 2017 UTC: INFO: QC.py(180): Changed (1/572) 233 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 21:44:45 06 Feb 2017 UTC: INFO: QC.py(180): Changed (4/572) 225 245 324 325 to QC_INTERPOLATED because changed corrected temp implies changed speed 21:44:45 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.69 cm/s 21:44:45 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.75 cm/s 21:44:45 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:44:45 06 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (157/572) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:44:45 06 Feb 2017 UTC: INFO: QC.py(180): Changed (4/572) 3 5 324 325 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:44:45 06 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (157/572) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:44:45 06 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/572) 570 572 to QC_BAD because bad aa4330 oyxgen 21:44:45 06 Feb 2017 UTC: INFO: QC.py(180): Changed (4/572) 3 5 324 325 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:44:45 06 Feb 2017 UTC: INFO: QC.py(180): Changed (13/572) 1:6 227:232 571 to QC_BAD because changed salinity implies changed optode oxygen 21:44:45 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:44:45 06 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:44:45 06 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:44:45 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 122: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.62% reduction 21:44:45 06 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.122 21:44:45 06 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:44:45 06 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:44:45 06 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:44:46 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:44:46 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 21:45:34 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 21:45:35 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 21:45:35 06 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 21:45:44 06 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:45:44 06 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:45:44 06 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:45:44 06 Feb 2017 UTC /home/sg626/p6260122.eng /home/sg626/p6260122.asc /home/sg626/p6260122.pro /home/sg626/p6260122.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 21:45:44 06 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:45:44 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:45:44 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:45:44 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:45:44 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:45:44 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:45:44 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:45:44 06 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:45:44 06 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:45:44 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:45:44 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:45:44 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:45:44 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:45:44 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:45:44 06 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:45:44 06 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:45:44 06 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:45:44 06 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:45:44 06 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:45:44 06 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:45:44 06 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:45:44 06 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:45:44 06 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:45:44 06 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 21:45:44 06 Feb 2017 UTC 00:44:59 07 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 29059 00:44:59 07 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:47:41 07 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 29165 00:47:41 07 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:47:41 07 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:47:41 07 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:47:41 07 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:47:41 07 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170206144740 ] 00:47:41 07 Feb 2017 UTC: INFO: Base.py(1333): PID:29173 00:47:41 07 Feb 2017 UTC: INFO: Base.py(1375): Started processing 00:47:41 07 Feb 2017 UTC 00:47:41 07 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:47:41 07 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:47:41 07 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:47:41 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:47:41 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:123 calls_made:1 call_cycle:0 00:47:41 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:47:41 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:123 calls_made:1 call_cycle:0 00:47:41 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:47:41 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:123 calls_made:1 call_cycle:0 00:47:41 07 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:123 calls_made:1 call_cycle:0 2245.7740 -15802.9650 02/07/17 00:43:00 UTC) to sdrifter@soest.hawaii.edu 00:47:41 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:123 calls_made:1 call_cycle:0 00:47:41 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:47:41 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:123 calls_made:1 call_cycle:0 00:47:41 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:47:41 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:123 calls_made:1 call_cycle:0 00:47:41 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:47:41 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:123 calls_made:1 call_cycle:0 00:47:41 07 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:47:41 07 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:47:44 07 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:47:44 07 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:47:44 07 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:47:44 07 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:47:44 07 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:47:44 07 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:47:44 07 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0123lz 00:47:44 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0123lz.x00 00:47:44 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0123lz.x01 00:47:44 07 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0123lz.r in process_file_group 00:47:44 07 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260123.log 00:47:44 07 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:47:44 07 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0123dz 00:47:44 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0123dz.x00 00:47:44 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0123dz.x01 00:47:44 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0123dz.x02 00:47:44 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0123dz.x03 00:47:44 07 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0123dz.r in process_file_group 00:47:45 07 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [123] 00:47:45 07 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [123] 00:47:45 07 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260123) for profiles 00:47:45 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 00:47:45 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/548) 548 to QC_BAD because CT out of water 00:47:45 07 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.137m) 00:47:45 07 Feb 2017 UTC: INFO: QC.py(365): Changed (2/548) 2 235 to QC_PROBABLY_BAD because raw temperature spikes 00:47:45 07 Feb 2017 UTC: INFO: QC.py(180): Changed (2/548) 2 235 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:47:45 07 Feb 2017 UTC: INFO: QC.py(180): Changed (1/548) 548 to QC_BAD because changed raw cond implies changed raw salinity 00:47:45 07 Feb 2017 UTC: INFO: QC.py(365): Changed (2/548) 2 235 to QC_INTERPOLATED because temperature spikes 00:47:45 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/548) 233:238 to QC_BAD because slow apogee CT flow 00:47:45 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/548) 1:6 to QC_BAD because prior to dive start 00:47:45 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/548) 547 to QC_BAD because end of climb 00:47:45 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/548) 1:6 233:238 547 548 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:47:45 07 Feb 2017 UTC: INFO: QC.py(180): Changed (14/548) 1:6 233:238 547 548 to QC_BAD because changed corrected salin implies changed speed 00:47:45 07 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:47:45 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.33 cm/s 00:47:45 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.37 cm/s 00:47:45 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:47:45 07 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (158/548) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:47:45 07 Feb 2017 UTC: INFO: QC.py(180): Changed (1/548) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:47:45 07 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (158/548) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 00:47:45 07 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/548) 546 548 to QC_BAD because bad aa4330 oyxgen 00:47:45 07 Feb 2017 UTC: INFO: QC.py(180): Changed (1/548) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:47:45 07 Feb 2017 UTC: INFO: QC.py(180): Changed (13/548) 1:6 233:238 547 to QC_BAD because changed salinity implies changed optode oxygen 00:47:45 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:47:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 00:47:46 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 123: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.55% reduction 00:47:46 07 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.123 00:47:46 07 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:47:46 07 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:47:46 07 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:47:46 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 00:47:46 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 00:48:36 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 00:48:36 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 00:48:36 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 00:48:45 07 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:48:45 07 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:48:45 07 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:48:45 07 Feb 2017 UTC /home/sg626/p6260123.log /home/sg626/p6260123.eng /home/sg626/p6260123.asc /home/sg626/p6260123.pro /home/sg626/p6260123.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 00:48:45 07 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:48:45 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:48:45 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:48:45 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:48:45 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:48:45 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:48:45 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:48:45 07 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:48:45 07 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:48:45 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:48:45 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:48:45 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:48:45 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:48:45 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:48:45 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:48:45 07 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:48:45 07 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:48:45 07 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:48:45 07 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:48:45 07 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:48:45 07 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:48:45 07 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:48:45 07 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:48:45 07 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 00:48:45 07 Feb 2017 UTC 03:46:50 07 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 2979 03:46:50 07 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:49:27 07 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 3085 03:49:27 07 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:49:27 07 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:49:27 07 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:49:27 07 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:49:27 07 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170206174927 ] 03:49:27 07 Feb 2017 UTC: INFO: Base.py(1333): PID:3093 03:49:27 07 Feb 2017 UTC: INFO: Base.py(1375): Started processing 03:49:27 07 Feb 2017 UTC 03:49:27 07 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:49:28 07 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:49:28 07 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:49:28 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:49:28 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:124 calls_made:1 call_cycle:0 03:49:28 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:49:28 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:124 calls_made:1 call_cycle:0 03:49:28 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:49:28 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:124 calls_made:1 call_cycle:0 03:49:28 07 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:124 calls_made:1 call_cycle:0 2245.6400 -15803.5300 02/07/17 03:44:55 UTC) to sdrifter@soest.hawaii.edu 03:49:28 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:124 calls_made:1 call_cycle:0 03:49:28 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:49:28 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:124 calls_made:1 call_cycle:0 03:49:28 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:49:28 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:124 calls_made:1 call_cycle:0 03:49:28 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:49:28 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:124 calls_made:1 call_cycle:0 03:49:28 07 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:49:28 07 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:49:30 07 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:49:30 07 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:49:30 07 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:49:30 07 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:49:30 07 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:49:30 07 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:49:31 07 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0124lz 03:49:31 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0124lz.x00 03:49:31 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0124lz.x01 03:49:31 07 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0124lz.r in process_file_group 03:49:31 07 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260124.log 03:49:31 07 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:49:31 07 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0124dz 03:49:31 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0124dz.x00 03:49:31 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0124dz.x01 03:49:31 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0124dz.x02 03:49:31 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0124dz.x03 03:49:31 07 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0124dz.r in process_file_group 03:49:31 07 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [124] 03:49:31 07 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [124] 03:49:31 07 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260124) for profiles 03:49:31 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 03:49:31 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/530) 530 to QC_BAD because CT out of water 03:49:31 07 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.143m) 03:49:31 07 Feb 2017 UTC: INFO: QC.py(365): Changed (6/530) 2 221 223 225 229 233 to QC_PROBABLY_BAD because raw temperature spikes 03:49:31 07 Feb 2017 UTC: INFO: QC.py(408): Changed (4/530) 223 225 229 233 to QC_PROBABLY_BAD because raw conductivity spikes 03:49:31 07 Feb 2017 UTC: INFO: QC.py(180): Changed (6/530) 2 221 223 225 229 233 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 03:49:31 07 Feb 2017 UTC: INFO: QC.py(180): Changed (1/530) 530 to QC_BAD because changed raw cond implies changed raw salinity 03:49:31 07 Feb 2017 UTC: INFO: QC.py(365): Changed (6/530) 2 221 223 225 229 233 to QC_INTERPOLATED because temperature spikes 03:49:31 07 Feb 2017 UTC: INFO: QC.py(408): Changed (4/530) 223 225 229 233 to QC_INTERPOLATED because conductivity spikes 03:49:31 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/530) 227:232 to QC_BAD because slow apogee CT flow 03:49:31 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/530) 1:6 to QC_BAD because prior to dive start 03:49:31 07 Feb 2017 UTC: INFO: QC.py(488): Changed (1/530) 233 to QC_PROBABLY_BAD because bad interpolation anchors 03:49:31 07 Feb 2017 UTC: INFO: QC.py(489): SUGGESTION: 124 bad_conductivity data_points in_between 231 233 % bad interpolation anchors 03:49:31 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/530) 1:6 227:232 530 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:49:31 07 Feb 2017 UTC: INFO: QC.py(180): Changed (13/530) 1:6 227:232 530 to QC_BAD because changed corrected salin implies changed speed 03:49:32 07 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 03:49:32 07 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 124 interp_salinity data_points in_between 365 370 % suspect thermal-inertia points 366 03:49:32 07 Feb 2017 UTC: INFO: QC.py(180): Changed (4/530) 221 223 225 233 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 03:49:32 07 Feb 2017 UTC: INFO: QC.py(180): Changed (1/530) 233 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 03:49:32 07 Feb 2017 UTC: INFO: QC.py(180): Changed (4/530) 221 223 225 233 to QC_INTERPOLATED because changed corrected temp implies changed speed 03:49:32 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.85 cm/s 03:49:32 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.78 cm/s 03:49:32 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:49:32 07 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (159/530) 123:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:49:32 07 Feb 2017 UTC: INFO: QC.py(180): Changed (2/530) 2 221 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:49:32 07 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (159/530) 123:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 03:49:32 07 Feb 2017 UTC: INFO: QC.py(180): Changed (2/530) 2 221 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 03:49:32 07 Feb 2017 UTC: INFO: QC.py(180): Changed (13/530) 1:6 227:232 530 to QC_BAD because changed salinity implies changed optode oxygen 03:49:32 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:49:32 07 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:49:32 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 03:49:32 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 124: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.45% reduction 03:49:32 07 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.124 03:49:32 07 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:49:32 07 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:49:32 07 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:49:32 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 03:49:32 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 03:50:23 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 03:50:24 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 03:50:24 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 03:50:33 07 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:50:33 07 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:50:33 07 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:50:33 07 Feb 2017 UTC /home/sg626/p6260124.log /home/sg626/p6260124.eng /home/sg626/p6260124.asc /home/sg626/p6260124.pro /home/sg626/p6260124.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 03:50:33 07 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:50:33 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:50:33 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:50:33 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:50:33 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:50:33 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:50:33 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:50:33 07 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:50:33 07 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:50:33 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:50:33 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:50:33 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:50:33 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:50:33 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:50:33 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:50:33 07 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:50:33 07 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:50:33 07 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:50:33 07 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:50:33 07 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:50:33 07 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:50:33 07 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:50:33 07 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:50:33 07 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 03:50:33 07 Feb 2017 UTC 06:57:27 07 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 8808 06:57:27 07 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:00:10 07 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 9013 07:00:10 07 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:00:10 07 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:00:10 07 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:00:10 07 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:00:10 07 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170206210009 ] 07:00:10 07 Feb 2017 UTC: INFO: Base.py(1333): PID:9021 07:00:10 07 Feb 2017 UTC: INFO: Base.py(1375): Started processing 07:00:10 07 Feb 2017 UTC 07:00:10 07 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:00:11 07 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:00:11 07 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:00:11 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:00:11 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:125 calls_made:1 call_cycle:0 07:00:11 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:00:11 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:125 calls_made:1 call_cycle:0 07:00:11 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:00:11 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:125 calls_made:1 call_cycle:0 07:00:11 07 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:125 calls_made:1 call_cycle:0 2245.8450 -15803.1470 02/07/17 06:55:30 UTC) to sdrifter@soest.hawaii.edu 07:00:11 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:125 calls_made:1 call_cycle:0 07:00:11 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:00:11 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:125 calls_made:1 call_cycle:0 07:00:11 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:00:11 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:125 calls_made:1 call_cycle:0 07:00:11 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:00:11 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:125 calls_made:1 call_cycle:0 07:00:11 07 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:00:11 07 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:00:13 07 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:00:13 07 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:00:13 07 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:00:13 07 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:00:13 07 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:00:13 07 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:00:14 07 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0125lz 07:00:14 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0125lz.x00 07:00:14 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0125lz.x01 07:00:14 07 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0125lz.r in process_file_group 07:00:14 07 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260125.log 07:00:14 07 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:00:14 07 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0125dz 07:00:14 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0125dz.x00 07:00:14 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0125dz.x01 07:00:14 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0125dz.x02 07:00:14 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0125dz.x03 07:00:14 07 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0125dz.r in process_file_group 07:00:14 07 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [125] 07:00:14 07 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [125] 07:00:14 07 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260125) for profiles 07:00:14 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 07:00:14 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/575) 575 to QC_BAD because CT out of water 07:00:14 07 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.033m) 07:00:14 07 Feb 2017 UTC: INFO: QC.py(365): Changed (3/575) 216 220 227 to QC_PROBABLY_BAD because raw temperature spikes 07:00:14 07 Feb 2017 UTC: INFO: QC.py(408): Changed (2/575) 248 382 to QC_PROBABLY_BAD because raw conductivity spikes 07:00:14 07 Feb 2017 UTC: INFO: QC.py(180): Changed (3/575) 216 220 227 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:00:14 07 Feb 2017 UTC: INFO: QC.py(180): Changed (2/575) 248 382 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 07:00:14 07 Feb 2017 UTC: INFO: QC.py(180): Changed (1/575) 575 to QC_BAD because changed raw cond implies changed raw salinity 07:00:14 07 Feb 2017 UTC: INFO: QC.py(365): Changed (3/575) 216 220 227 to QC_INTERPOLATED because temperature spikes 07:00:14 07 Feb 2017 UTC: INFO: QC.py(408): Changed (2/575) 248 382 to QC_INTERPOLATED because conductivity spikes 07:00:14 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/575) 237:242 to QC_BAD because slow apogee CT flow 07:00:14 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/575) 1:6 to QC_BAD because prior to dive start 07:00:14 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/575) 1:6 237:242 575 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:00:14 07 Feb 2017 UTC: INFO: QC.py(180): Changed (13/575) 1:6 237:242 575 to QC_BAD because changed corrected salin implies changed speed 07:00:15 07 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:00:15 07 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 125 interp_salinity data_points in_between 351 356 % suspect thermal-inertia points 353:355 07:00:15 07 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 125 interp_salinity data_points in_between 378 384 % suspect thermal-inertia points 380 07:00:15 07 Feb 2017 UTC: INFO: QC.py(180): Changed (3/575) 216 220 227 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 07:00:15 07 Feb 2017 UTC: INFO: QC.py(180): Changed (2/575) 248 382 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 07:00:15 07 Feb 2017 UTC: INFO: QC.py(180): Changed (3/575) 216 220 227 to QC_INTERPOLATED because changed corrected temp implies changed speed 07:00:15 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.34 cm/s 07:00:15 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.94 cm/s 07:00:15 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:00:15 07 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (165/575) 130 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:00:15 07 Feb 2017 UTC: INFO: QC.py(180): Changed (1/575) 216 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:00:15 07 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (165/575) 130 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 07:00:15 07 Feb 2017 UTC: INFO: QC.py(180): Changed (1/575) 216 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:00:15 07 Feb 2017 UTC: INFO: QC.py(180): Changed (13/575) 1:6 237:242 575 to QC_BAD because changed salinity implies changed optode oxygen 07:00:15 07 Feb 2017 UTC: INFO: QC.py(180): Changed (1/575) 382 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 07:00:15 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:00:15 07 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:00:15 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 07:00:15 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 125: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.26% reduction 07:00:16 07 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.125 07:00:16 07 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:00:16 07 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:00:16 07 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:00:16 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 07:00:16 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:01:06 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 07:01:07 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:01:07 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:01:16 07 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:01:16 07 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:01:16 07 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:01:16 07 Feb 2017 UTC /home/sg626/p6260125.log /home/sg626/p6260125.eng /home/sg626/p6260125.asc /home/sg626/p6260125.pro /home/sg626/p6260125.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:01:16 07 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:01:16 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:01:16 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:01:16 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:01:16 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:01:16 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:01:16 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:01:16 07 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:01:16 07 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:01:16 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:01:16 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:01:16 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:01:16 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:01:16 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:01:16 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:01:16 07 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:01:16 07 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:01:16 07 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:01:16 07 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:01:16 07 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:01:16 07 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:01:16 07 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:01:16 07 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:01:16 07 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 07:01:16 07 Feb 2017 UTC 10:05:20 07 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 14764 10:05:20 07 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:08:01 07 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 14879 10:08:01 07 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:08:01 07 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:08:01 07 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:08:01 07 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:08:01 07 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170207000800 ] 10:08:01 07 Feb 2017 UTC: INFO: Base.py(1333): PID:14887 10:08:01 07 Feb 2017 UTC: INFO: Base.py(1375): Started processing 10:08:01 07 Feb 2017 UTC 10:08:01 07 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:08:01 07 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:08:01 07 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:08:01 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:08:01 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:126 calls_made:1 call_cycle:0 10:08:01 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:08:01 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:126 calls_made:1 call_cycle:0 10:08:01 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:08:01 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:126 calls_made:1 call_cycle:0 10:08:01 07 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:126 calls_made:1 call_cycle:0 2245.8360 -15803.4590 02/07/17 10:03:22 UTC) to sdrifter@soest.hawaii.edu 10:08:01 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:126 calls_made:1 call_cycle:0 10:08:01 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:08:01 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:126 calls_made:1 call_cycle:0 10:08:01 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:08:01 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:126 calls_made:1 call_cycle:0 10:08:01 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:08:01 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:126 calls_made:1 call_cycle:0 10:08:01 07 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:08:01 07 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:08:04 07 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:08:04 07 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:08:04 07 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:08:04 07 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:08:04 07 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:08:04 07 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:08:04 07 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0126lz 10:08:04 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0126lz.x00 10:08:04 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0126lz.x01 10:08:04 07 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0126lz.r in process_file_group 10:08:04 07 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260126.log 10:08:04 07 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:08:04 07 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0126dz 10:08:04 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0126dz.x00 10:08:04 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0126dz.x01 10:08:04 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0126dz.x02 10:08:04 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0126dz.x03 10:08:04 07 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0126dz.r in process_file_group 10:08:05 07 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [126] 10:08:05 07 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [126] 10:08:05 07 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260126) for profiles 10:08:05 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 10:08:05 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/561) 560 561 to QC_BAD because CT out of water 10:08:05 07 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.103m) 10:08:05 07 Feb 2017 UTC: INFO: QC.py(365): Changed (5/561) 2:4 229 560 to QC_PROBABLY_BAD because raw temperature spikes 10:08:05 07 Feb 2017 UTC: INFO: QC.py(377): Changed (1/561) 561 to QC_BAD because raw salinity below bound 10:08:05 07 Feb 2017 UTC: INFO: QC.py(408): Changed (2/561) 215 229 to QC_PROBABLY_BAD because raw conductivity spikes 10:08:05 07 Feb 2017 UTC: INFO: QC.py(180): Changed (5/561) 2:4 229 560 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 10:08:05 07 Feb 2017 UTC: INFO: QC.py(180): Changed (1/561) 215 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 10:08:05 07 Feb 2017 UTC: INFO: QC.py(180): Changed (1/561) 560 to QC_BAD because changed raw cond implies changed raw salinity 10:08:05 07 Feb 2017 UTC: INFO: QC.py(365): Changed (5/561) 2:4 229 560 to QC_INTERPOLATED because temperature spikes 10:08:05 07 Feb 2017 UTC: INFO: QC.py(377): Changed (1/561) 561 to QC_BAD because salinity below bound 10:08:05 07 Feb 2017 UTC: INFO: QC.py(408): Changed (2/561) 215 229 to QC_INTERPOLATED because conductivity spikes 10:08:05 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/561) 227:231 to QC_BAD because slow apogee CT flow 10:08:05 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/561) 1:6 to QC_BAD because prior to dive start 10:08:05 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/561) 1:6 227:231 560 561 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:08:05 07 Feb 2017 UTC: INFO: QC.py(180): Changed (13/561) 1:6 227:231 560 561 to QC_BAD because changed corrected salin implies changed speed 10:08:06 07 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 10:08:06 07 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 126 interp_salinity data_points in_between 359 375 % suspect thermal-inertia points 363:365 369 10:08:06 07 Feb 2017 UTC: INFO: QC.py(180): Changed (1/561) 215 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 10:08:06 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.98 cm/s 10:08:06 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.89 cm/s 10:08:06 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:08:06 07 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/561) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:08:06 07 Feb 2017 UTC: INFO: QC.py(180): Changed (4/561) 2:4 560 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 10:08:06 07 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/561) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 10:08:06 07 Feb 2017 UTC: INFO: QC.py(180): Changed (4/561) 2:4 560 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 10:08:06 07 Feb 2017 UTC: INFO: QC.py(180): Changed (13/561) 1:6 227:231 560 561 to QC_BAD because changed salinity implies changed optode oxygen 10:08:06 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:08:06 07 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:08:06 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 10:08:06 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 126: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.32% reduction 10:08:06 07 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.126 10:08:06 07 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:08:06 07 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:08:06 07 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:08:06 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 10:08:06 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 10:08:57 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 10:08:57 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 10:08:57 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 10:09:07 07 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:09:07 07 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:09:07 07 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 10:09:07 07 Feb 2017 UTC /home/sg626/p6260126.log /home/sg626/p6260126.eng /home/sg626/p6260126.asc /home/sg626/p6260126.pro /home/sg626/p6260126.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 10:09:07 07 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:09:07 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:09:07 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:09:07 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:09:07 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:09:07 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:09:07 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:09:07 07 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:09:07 07 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:09:07 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:09:07 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:09:07 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:09:07 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:09:07 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:09:07 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:09:07 07 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:09:07 07 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:09:07 07 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:09:07 07 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:09:07 07 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:09:07 07 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:09:07 07 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:09:07 07 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:09:07 07 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 10:09:07 07 Feb 2017 UTC 13:12:38 07 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 20303 13:12:38 07 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:15:18 07 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 20428 13:15:18 07 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:15:18 07 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:15:18 07 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:15:18 07 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:15:18 07 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170207031518 ] 13:15:18 07 Feb 2017 UTC: INFO: Base.py(1333): PID:20435 13:15:18 07 Feb 2017 UTC: INFO: Base.py(1375): Started processing 13:15:18 07 Feb 2017 UTC 13:15:18 07 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:15:19 07 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:15:19 07 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:15:19 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:15:19 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:127 calls_made:1 call_cycle:0 13:15:19 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:15:19 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:127 calls_made:1 call_cycle:0 13:15:19 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:15:19 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:127 calls_made:1 call_cycle:0 13:15:19 07 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:127 calls_made:1 call_cycle:0 2245.8500 -15802.8850 02/07/17 13:10:43 UTC) to sdrifter@soest.hawaii.edu 13:15:19 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:127 calls_made:1 call_cycle:0 13:15:19 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:15:19 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:127 calls_made:1 call_cycle:0 13:15:19 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:15:19 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:127 calls_made:1 call_cycle:0 13:15:19 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:15:19 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:127 calls_made:1 call_cycle:0 13:15:19 07 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:15:19 07 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:15:21 07 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:15:22 07 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:15:22 07 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:15:22 07 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:15:22 07 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:15:22 07 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:15:22 07 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0127lz 13:15:22 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0127lz.x00 13:15:22 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0127lz.x01 13:15:22 07 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0127lz.r in process_file_group 13:15:22 07 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260127.log 13:15:22 07 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:15:22 07 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0127dz 13:15:22 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0127dz.x00 13:15:22 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0127dz.x01 13:15:22 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0127dz.x02 13:15:22 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0127dz.x03 13:15:22 07 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0127dz.r in process_file_group 13:15:22 07 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [127] 13:15:22 07 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [127] 13:15:22 07 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260127) for profiles 13:15:22 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:15:23 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/541) 541 to QC_BAD because CT out of water 13:15:23 07 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.098m) 13:15:23 07 Feb 2017 UTC: INFO: QC.py(365): Changed (1/541) 2 to QC_PROBABLY_BAD because raw temperature spikes 13:15:23 07 Feb 2017 UTC: INFO: QC.py(408): Changed (1/541) 234 to QC_PROBABLY_BAD because raw conductivity spikes 13:15:23 07 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <204 pt uncorrectable 1003.7m SUSPECT weak conductivity anomaly n:-0.31 p:0.30> 13:15:23 07 Feb 2017 UTC: INFO: QC.py(180): Changed (1/541) 2 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:15:23 07 Feb 2017 UTC: INFO: QC.py(180): Changed (1/541) 234 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 13:15:23 07 Feb 2017 UTC: INFO: QC.py(180): Changed (1/541) 541 to QC_BAD because changed raw cond implies changed raw salinity 13:15:23 07 Feb 2017 UTC: INFO: QC.py(365): Changed (1/541) 2 to QC_INTERPOLATED because temperature spikes 13:15:23 07 Feb 2017 UTC: INFO: QC.py(408): Changed (1/541) 234 to QC_INTERPOLATED because conductivity spikes 13:15:23 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/541) 232:236 to QC_BAD because slow apogee CT flow 13:15:23 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/541) 1:6 to QC_BAD because prior to dive start 13:15:23 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/541) 1:6 232:236 541 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:15:23 07 Feb 2017 UTC: INFO: QC.py(180): Changed (12/541) 1:6 232:236 541 to QC_BAD because changed corrected salin implies changed speed 13:15:23 07 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:15:23 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.58 cm/s 13:15:23 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.56 cm/s 13:15:23 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:15:23 07 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (164/541) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:15:23 07 Feb 2017 UTC: INFO: QC.py(180): Changed (1/541) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:15:23 07 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (164/541) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:15:23 07 Feb 2017 UTC: INFO: QC.py(180): Changed (1/541) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:15:23 07 Feb 2017 UTC: INFO: QC.py(180): Changed (12/541) 1:6 232:236 541 to QC_BAD because changed salinity implies changed optode oxygen 13:15:23 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:15:23 07 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:15:23 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:15:24 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 127: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.22% reduction 13:15:24 07 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.127 13:15:24 07 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:15:24 07 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:15:24 07 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:15:24 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:15:24 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:16:15 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 13:16:16 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:16:16 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:16:25 07 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:16:25 07 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:16:25 07 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:16:25 07 Feb 2017 UTC /home/sg626/p6260127.log /home/sg626/p6260127.eng /home/sg626/p6260127.asc /home/sg626/p6260127.pro /home/sg626/p6260127.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:16:25 07 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:16:25 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:16:25 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:16:25 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:16:25 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:16:25 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:16:25 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:16:25 07 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:16:25 07 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:16:25 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:16:25 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:16:25 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:16:25 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:16:25 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:16:25 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:16:25 07 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:16:25 07 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:16:25 07 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:16:25 07 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:16:25 07 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:16:25 07 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:16:25 07 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:16:25 07 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:16:25 07 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 13:16:25 07 Feb 2017 UTC 16:28:38 07 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 26181 16:28:38 07 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:29:06 07 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 26261 16:29:06 07 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:29:06 07 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:29:06 07 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:29:06 07 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:29:06 07 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170207062906 ] 16:29:06 07 Feb 2017 UTC: INFO: Base.py(1333): PID:26269 16:29:07 07 Feb 2017 UTC: INFO: Base.py(1375): Started processing 16:29:07 07 Feb 2017 UTC 16:29:07 07 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:29:07 07 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:29:07 07 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:29:07 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:29:07 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:128 calls_made:4 call_cycle:0 16:29:07 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:29:07 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:128 calls_made:4 call_cycle:0 16:29:07 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:29:07 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:128 calls_made:4 call_cycle:0 16:29:07 07 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:128 calls_made:4 call_cycle:0 2245.7980 -15803.1310 02/07/17 16:19:30 UTC) to sdrifter@soest.hawaii.edu 16:29:07 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:128 calls_made:4 call_cycle:0 16:29:07 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:29:07 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:128 calls_made:4 call_cycle:0 16:29:07 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:29:07 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:128 calls_made:4 call_cycle:0 16:29:07 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:29:07 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:128 calls_made:4 call_cycle:0 16:29:07 07 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:29:07 07 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:29:10 07 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:29:10 07 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:29:10 07 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:29:10 07 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:29:10 07 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:29:10 07 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:29:10 07 Feb 2017 UTC: WARNING: Base.py(1624): No dives to process 16:29:10 07 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [] 16:29:10 07 Feb 2017 UTC: INFO: Base.py(1780): No dives found to profile 16:29:10 07 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.128 16:29:10 07 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:29:10 07 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:29:10 07 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:29:10 07 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:29:10 07 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:29:10 07 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:29:10 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:29:10 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:29:10 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:29:10 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:29:10 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:29:10 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:29:10 07 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:29:10 07 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:29:10 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:29:10 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:29:10 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:29:10 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:29:10 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:29:10 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:29:10 07 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:29:10 07 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:29:10 07 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:29:10 07 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:29:10 07 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:29:10 07 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:29:10 07 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:29:10 07 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:29:10 07 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 16:29:10 07 Feb 2017 UTC 16:31:21 07 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 26674 16:31:21 07 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:34:06 07 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 26790 16:34:06 07 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:34:06 07 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:34:06 07 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:34:06 07 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:34:06 07 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170207063406 ] 16:34:06 07 Feb 2017 UTC: INFO: Base.py(1333): PID:26798 16:34:06 07 Feb 2017 UTC: INFO: Base.py(1375): Started processing 16:34:06 07 Feb 2017 UTC 16:34:06 07 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:34:07 07 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:34:07 07 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:34:07 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:34:07 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:128 calls_made:5 call_cycle:0 16:34:07 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:34:07 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:128 calls_made:5 call_cycle:0 16:34:07 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:34:07 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:128 calls_made:5 call_cycle:0 16:34:07 07 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:128 calls_made:5 call_cycle:0 2245.7980 -15803.1310 02/07/17 16:19:30 UTC) to sdrifter@soest.hawaii.edu 16:34:07 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:128 calls_made:5 call_cycle:0 16:34:07 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:34:07 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:128 calls_made:5 call_cycle:0 16:34:07 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:34:07 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:128 calls_made:5 call_cycle:0 16:34:07 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:34:07 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:128 calls_made:5 call_cycle:0 16:34:07 07 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:34:07 07 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:34:09 07 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:34:10 07 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:34:10 07 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:34:10 07 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:34:10 07 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:34:10 07 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:34:10 07 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0128lz 16:34:10 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0128lz.x00 16:34:10 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0128lz.x01 16:34:10 07 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0128lz.r in process_file_group 16:34:10 07 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260128.log 16:34:10 07 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:34:10 07 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0128dz 16:34:10 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0128dz.x00 16:34:10 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0128dz.x01 16:34:10 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0128dz.x02 16:34:10 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0128dz.x03 16:34:10 07 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0128dz.r in process_file_group 16:34:10 07 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [128] 16:34:10 07 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [128] 16:34:10 07 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260128) for profiles 16:34:10 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:34:11 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/575) 574 575 to QC_BAD because CT out of water 16:34:11 07 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.134m) 16:34:11 07 Feb 2017 UTC: INFO: QC.py(365): Changed (3/575) 2 212 228 to QC_PROBABLY_BAD because raw temperature spikes 16:34:11 07 Feb 2017 UTC: INFO: QC.py(377): Changed (1/575) 575 to QC_BAD because raw salinity below bound 16:34:11 07 Feb 2017 UTC: INFO: QC.py(408): Changed (1/575) 238 to QC_PROBABLY_BAD because raw conductivity spikes 16:34:11 07 Feb 2017 UTC: INFO: QC.py(180): Changed (3/575) 2 212 228 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:34:11 07 Feb 2017 UTC: INFO: QC.py(180): Changed (1/575) 238 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 16:34:11 07 Feb 2017 UTC: INFO: QC.py(180): Changed (1/575) 574 to QC_BAD because changed raw cond implies changed raw salinity 16:34:11 07 Feb 2017 UTC: INFO: QC.py(365): Changed (3/575) 2 212 228 to QC_INTERPOLATED because temperature spikes 16:34:11 07 Feb 2017 UTC: INFO: QC.py(377): Changed (1/575) 575 to QC_BAD because salinity below bound 16:34:11 07 Feb 2017 UTC: INFO: QC.py(408): Changed (1/575) 238 to QC_INTERPOLATED because conductivity spikes 16:34:11 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/575) 226:230 to QC_BAD because slow apogee CT flow 16:34:11 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/575) 1:6 to QC_BAD because prior to dive start 16:34:11 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/575) 573 to QC_BAD because end of climb 16:34:11 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/575) 1:6 226:230 573:575 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:34:11 07 Feb 2017 UTC: INFO: QC.py(180): Changed (14/575) 1:6 226:230 573:575 to QC_BAD because changed corrected salin implies changed speed 16:34:11 07 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:34:11 07 Feb 2017 UTC: INFO: QC.py(180): Changed (1/575) 212 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 16:34:11 07 Feb 2017 UTC: INFO: QC.py(180): Changed (1/575) 238 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 16:34:11 07 Feb 2017 UTC: INFO: QC.py(180): Changed (1/575) 212 to QC_INTERPOLATED because changed corrected temp implies changed speed 16:34:11 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.14 cm/s 16:34:11 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.75 cm/s 16:34:11 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:34:11 07 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (162/575) 123:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:34:11 07 Feb 2017 UTC: INFO: QC.py(180): Changed (1/575) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:34:11 07 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (162/575) 123:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:34:11 07 Feb 2017 UTC: INFO: QC.py(180): Changed (1/575) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:34:11 07 Feb 2017 UTC: INFO: QC.py(180): Changed (14/575) 1:6 226:230 573:575 to QC_BAD because changed salinity implies changed optode oxygen 16:34:11 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:34:11 07 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:34:11 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:34:12 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 128: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.43% reduction 16:34:12 07 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.128 16:34:12 07 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:34:12 07 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:34:12 07 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:34:12 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:34:12 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:35:04 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 16:35:05 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:35:05 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:35:14 07 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:35:14 07 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:35:14 07 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:35:14 07 Feb 2017 UTC /home/sg626/p6260128.log /home/sg626/p6260128.eng /home/sg626/p6260128.asc /home/sg626/p6260128.pro /home/sg626/p6260128.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:35:14 07 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:35:14 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:35:14 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:35:14 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:35:14 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:35:14 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:35:14 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:35:14 07 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:35:14 07 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:35:14 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:35:14 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:35:14 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:35:14 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:35:14 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:35:14 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:35:14 07 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:35:14 07 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:35:14 07 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:35:14 07 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:35:14 07 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:35:14 07 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:35:14 07 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:35:14 07 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:35:14 07 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 16:35:14 07 Feb 2017 UTC 19:42:03 07 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 32460 19:42:03 07 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:44:40 07 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 32584 19:44:40 07 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:44:40 07 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:44:40 07 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:44:40 07 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:44:40 07 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170207094440 ] 19:44:40 07 Feb 2017 UTC: INFO: Base.py(1333): PID:32592 19:44:40 07 Feb 2017 UTC: INFO: Base.py(1375): Started processing 19:44:40 07 Feb 2017 UTC 19:44:40 07 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:44:41 07 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:44:41 07 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:44:41 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:44:41 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:129 calls_made:1 call_cycle:0 19:44:41 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:44:41 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:129 calls_made:1 call_cycle:0 19:44:41 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:44:41 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:129 calls_made:1 call_cycle:0 19:44:41 07 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:129 calls_made:1 call_cycle:0 2245.6000 -15803.5930 02/07/17 19:40:01 UTC) to sdrifter@soest.hawaii.edu 19:44:41 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:129 calls_made:1 call_cycle:0 19:44:41 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:44:41 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:129 calls_made:1 call_cycle:0 19:44:41 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:44:41 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:129 calls_made:1 call_cycle:0 19:44:41 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:44:41 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:129 calls_made:1 call_cycle:0 19:44:41 07 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:44:41 07 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:44:43 07 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:44:44 07 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:44:44 07 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:44:44 07 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:44:44 07 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:44:44 07 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:44:44 07 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0129lz 19:44:44 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0129lz.x00 19:44:44 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0129lz.x01 19:44:44 07 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0129lz.r in process_file_group 19:44:44 07 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260129.log 19:44:44 07 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:44:44 07 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0129dz 19:44:44 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0129dz.x00 19:44:44 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0129dz.x01 19:44:44 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0129dz.x02 19:44:44 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0129dz.x03 19:44:44 07 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0129dz.r in process_file_group 19:44:44 07 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [129] 19:44:44 07 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [129] 19:44:44 07 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260129) for profiles 19:44:44 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 19:44:44 07 Feb 2017 UTC: INFO: QC.py(365): Changed (6/569) 214 220 225 232 237 240 to QC_PROBABLY_BAD because raw temperature spikes 19:44:44 07 Feb 2017 UTC: INFO: QC.py(408): Changed (5/569) 214 225 229 232 240 to QC_PROBABLY_BAD because raw conductivity spikes 19:44:45 07 Feb 2017 UTC: INFO: QC.py(180): Changed (6/569) 214 220 225 232 237 240 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:44:45 07 Feb 2017 UTC: INFO: QC.py(180): Changed (1/569) 229 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 19:44:45 07 Feb 2017 UTC: INFO: QC.py(365): Changed (6/569) 214 220 225 232 237 240 to QC_INTERPOLATED because temperature spikes 19:44:45 07 Feb 2017 UTC: INFO: QC.py(408): Changed (5/569) 214 225 229 232 240 to QC_INTERPOLATED because conductivity spikes 19:44:45 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/569) 235:240 to QC_BAD because slow apogee CT flow 19:44:45 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/569) 1:6 to QC_BAD because prior to dive start 19:44:45 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/569) 1:6 235:240 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:44:45 07 Feb 2017 UTC: INFO: QC.py(180): Changed (12/569) 1:6 235:240 to QC_BAD because changed corrected salin implies changed speed 19:44:45 07 Feb 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 568 19:44:45 07 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:44:45 07 Feb 2017 UTC: INFO: QC.py(180): Changed (4/569) 214 220 225 232 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 19:44:45 07 Feb 2017 UTC: INFO: QC.py(180): Changed (1/569) 229 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 19:44:45 07 Feb 2017 UTC: INFO: QC.py(180): Changed (4/569) 214 220 225 232 to QC_INTERPOLATED because changed corrected temp implies changed speed 19:44:45 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.03 cm/s 19:44:45 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.85 cm/s 19:44:45 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:44:45 07 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (166/569) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:44:45 07 Feb 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/569) 568 to QC_BAD because slow flow in SBE43 19:44:45 07 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (166/569) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 19:44:45 07 Feb 2017 UTC: INFO: QC.py(180): Changed (12/569) 1:6 235:240 to QC_BAD because changed salinity implies changed optode oxygen 19:44:45 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:44:45 07 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:44:45 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 19:44:46 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 129: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.11% reduction 19:44:46 07 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.129 19:44:46 07 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:44:46 07 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:44:46 07 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:44:46 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 19:44:46 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 19:45:39 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 19:45:40 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 19:45:40 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 19:45:50 07 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:45:50 07 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:45:50 07 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:45:50 07 Feb 2017 UTC /home/sg626/p6260129.log /home/sg626/p6260129.eng /home/sg626/p6260129.asc /home/sg626/p6260129.pro /home/sg626/p6260129.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 19:45:50 07 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:45:50 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:45:50 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:45:50 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:45:50 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:45:50 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:45:50 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:45:50 07 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:45:50 07 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:45:50 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:45:50 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:45:50 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:45:50 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:45:50 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:45:50 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:45:50 07 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:45:50 07 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:45:50 07 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:45:50 07 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:45:50 07 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:45:50 07 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:45:50 07 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:45:50 07 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:45:50 07 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 19:45:50 07 Feb 2017 UTC 22:38:18 07 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 5421 22:38:18 07 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:40:53 07 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 5620 22:40:53 07 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:40:53 07 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:40:53 07 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:40:53 07 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:40:53 07 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170207124052 ] 22:40:53 07 Feb 2017 UTC: INFO: Base.py(1333): PID:5628 22:40:53 07 Feb 2017 UTC: INFO: Base.py(1375): Started processing 22:40:53 07 Feb 2017 UTC 22:40:53 07 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:40:53 07 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:40:53 07 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:40:53 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:40:53 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:130 calls_made:1 call_cycle:0 22:40:53 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:40:53 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:130 calls_made:1 call_cycle:0 22:40:53 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:40:53 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:130 calls_made:1 call_cycle:0 22:40:53 07 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:130 calls_made:1 call_cycle:0 2247.3540 -15804.4790 02/07/17 22:36:24 UTC) to sdrifter@soest.hawaii.edu 22:40:53 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:130 calls_made:1 call_cycle:0 22:40:53 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:40:53 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:130 calls_made:1 call_cycle:0 22:40:53 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:40:53 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:130 calls_made:1 call_cycle:0 22:40:53 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:40:53 07 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:130 calls_made:1 call_cycle:0 22:40:53 07 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:40:53 07 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:40:56 07 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:40:56 07 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:40:56 07 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:40:56 07 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:40:56 07 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:40:56 07 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:40:56 07 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0130lz 22:40:56 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0130lz.x00 22:40:56 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0130lz.x01 22:40:56 07 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0130lz.r in process_file_group 22:40:56 07 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260130.log 22:40:56 07 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 22:40:56 07 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0130dz 22:40:56 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0130dz.x00 22:40:56 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0130dz.x01 22:40:56 07 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0130dz.x02 22:40:56 07 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0130dz.r in process_file_group 22:40:57 07 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [130] 22:40:57 07 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [130] 22:40:57 07 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260130) for profiles 22:40:57 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 22:40:57 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/472) 471 to QC_BAD because CT out of water 22:40:57 07 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.101m) 22:40:57 07 Feb 2017 UTC: INFO: QC.py(365): Changed (9/472) 3 200 205 207 213 214 230 231 239 to QC_PROBABLY_BAD because raw temperature spikes 22:40:57 07 Feb 2017 UTC: INFO: QC.py(408): Changed (6/472) 205 207 213 214 230 231 to QC_PROBABLY_BAD because raw conductivity spikes 22:40:57 07 Feb 2017 UTC: INFO: QC.py(180): Changed (9/472) 3 200 205 207 213 214 230 231 239 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 22:40:57 07 Feb 2017 UTC: INFO: QC.py(180): Changed (1/472) 471 to QC_BAD because changed raw cond implies changed raw salinity 22:40:57 07 Feb 2017 UTC: INFO: QC.py(365): Changed (9/472) 3 200 205 207 213 214 230 231 239 to QC_INTERPOLATED because temperature spikes 22:40:57 07 Feb 2017 UTC: INFO: QC.py(408): Changed (6/472) 205 207 213 214 230 231 to QC_INTERPOLATED because conductivity spikes 22:40:57 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/472) 221:226 to QC_BAD because slow apogee CT flow 22:40:57 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/472) 1:6 to QC_BAD because prior to dive start 22:40:57 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/472) 470 472 to QC_BAD because end of climb 22:40:57 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/472) 1:6 221:226 470:472 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:40:57 07 Feb 2017 UTC: INFO: QC.py(180): Changed (15/472) 1:6 221:226 470:472 to QC_BAD because changed corrected salin implies changed speed 22:40:57 07 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:40:57 07 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 130 interp_salinity data_points in_between 306 329 % suspect thermal-inertia points 315 316 22:40:57 07 Feb 2017 UTC: INFO: QC.py(180): Changed (8/472) 200 205 207 213 214 230 231 239 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 22:40:57 07 Feb 2017 UTC: INFO: QC.py(180): Changed (8/472) 200 205 207 213 214 230 231 239 to QC_INTERPOLATED because changed corrected temp implies changed speed 22:40:57 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 35.46 cm/s 22:40:57 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.80 cm/s 22:40:57 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:40:57 07 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (163/472) 119 120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:40:57 07 Feb 2017 UTC: INFO: QC.py(180): Changed (2/472) 3 231 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 22:40:57 07 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (163/472) 119 120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 22:40:57 07 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/472) 470 to QC_BAD because bad aa4330 oyxgen 22:40:57 07 Feb 2017 UTC: INFO: QC.py(180): Changed (2/472) 3 231 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 22:40:57 07 Feb 2017 UTC: INFO: QC.py(180): Changed (14/472) 1:6 221:226 471 472 to QC_BAD because changed salinity implies changed optode oxygen 22:40:57 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:40:57 07 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 22:40:57 07 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 22:40:58 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 130: Data set size for profile, binned and kkyy files reduced by 15 points, a 3.18% reduction 22:40:58 07 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.130 22:40:58 07 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:40:58 07 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:40:58 07 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:40:58 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 22:40:58 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 22:41:51 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 22:41:52 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 22:41:52 07 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 22:42:02 07 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:42:02 07 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:42:02 07 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:42:02 07 Feb 2017 UTC /home/sg626/p6260130.log /home/sg626/p6260130.eng /home/sg626/p6260130.asc /home/sg626/p6260130.pro /home/sg626/p6260130.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 22:42:02 07 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:42:02 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:42:02 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:42:02 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:42:02 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:42:02 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:42:02 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:42:02 07 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:42:02 07 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:42:02 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:42:02 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:42:02 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:42:02 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:42:02 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:42:02 07 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:42:02 07 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:42:02 07 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:42:02 07 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:42:02 07 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:42:02 07 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:42:02 07 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:42:02 07 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:42:02 07 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:42:02 07 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 22:42:02 07 Feb 2017 UTC 01:45:44 08 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 10850 01:45:44 08 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:48:23 08 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 10965 01:48:23 08 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:48:23 08 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:48:23 08 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:48:23 08 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:48:23 08 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170207154823 ] 01:48:23 08 Feb 2017 UTC: INFO: Base.py(1333): PID:10973 01:48:23 08 Feb 2017 UTC: INFO: Base.py(1375): Started processing 01:48:23 08 Feb 2017 UTC 01:48:23 08 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:48:24 08 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:48:24 08 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:48:24 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:48:24 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:131 calls_made:1 call_cycle:0 01:48:24 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:48:24 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:131 calls_made:1 call_cycle:0 01:48:24 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:48:24 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:131 calls_made:1 call_cycle:0 01:48:24 08 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:131 calls_made:1 call_cycle:0 2249.3800 -15804.4340 02/08/17 01:43:51 UTC) to sdrifter@soest.hawaii.edu 01:48:24 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:131 calls_made:1 call_cycle:0 01:48:24 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:48:24 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:131 calls_made:1 call_cycle:0 01:48:24 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:48:24 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:131 calls_made:1 call_cycle:0 01:48:24 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:48:24 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:131 calls_made:1 call_cycle:0 01:48:24 08 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:48:24 08 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:48:26 08 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:48:27 08 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:48:27 08 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:48:27 08 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:48:27 08 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:48:27 08 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:48:27 08 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0131lz 01:48:27 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0131lz.x00 01:48:27 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0131lz.x01 01:48:27 08 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0131lz.r in process_file_group 01:48:27 08 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260131.log 01:48:27 08 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:48:27 08 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0131dz 01:48:27 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0131dz.x00 01:48:27 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0131dz.x01 01:48:27 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0131dz.x02 01:48:27 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0131dz.x03 01:48:27 08 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0131dz.r in process_file_group 01:48:27 08 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [131] 01:48:27 08 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [131] 01:48:27 08 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260131) for profiles 01:48:27 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:48:27 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/558) 556:558 to QC_BAD because CT out of water 01:48:27 08 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.147m) 01:48:27 08 Feb 2017 UTC: INFO: QC.py(377): Changed (2/558) 556 557 to QC_BAD because raw salinity below bound 01:48:28 08 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(963): Restarting anomaly after 44.22m: -0.2743 at 272.93m (124) 01:48:28 08 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <186 pt uncorrectable 907.9m SUSPECT weak conductivity anomaly n:-0.27 p:0.25> 01:48:28 08 Feb 2017 UTC: INFO: QC.py(180): Changed (1/558) 558 to QC_BAD because changed raw cond implies changed raw salinity 01:48:28 08 Feb 2017 UTC: INFO: QC.py(377): Changed (2/558) 556 557 to QC_BAD because salinity below bound 01:48:28 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/558) 216:220 to QC_BAD because slow apogee CT flow 01:48:28 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/558) 1:6 to QC_BAD because prior to dive start 01:48:28 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/558) 555 to QC_BAD because end of climb 01:48:28 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/558) 1:6 216:220 555:558 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:48:28 08 Feb 2017 UTC: INFO: QC.py(180): Changed (15/558) 1:6 216:220 555:558 to QC_BAD because changed corrected salin implies changed speed 01:48:28 08 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:48:28 08 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 131 interp_salinity data_points in_between 329 337 % suspect thermal-inertia points 331 332 01:48:28 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.43 cm/s 01:48:28 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.87 cm/s 01:48:28 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:48:28 08 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (163/558) 113:115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:48:28 08 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (163/558) 113:115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 01:48:28 08 Feb 2017 UTC: INFO: QC.py(180): Changed (15/558) 1:6 216:220 555:558 to QC_BAD because changed salinity implies changed optode oxygen 01:48:28 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:48:28 08 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:48:28 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:48:29 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 131: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.69% reduction 01:48:29 08 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.131 01:48:29 08 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:48:29 08 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:48:29 08 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:48:29 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:48:29 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 01:49:23 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 01:49:23 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 01:49:23 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 01:49:33 08 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:49:33 08 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:49:33 08 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:49:33 08 Feb 2017 UTC /home/sg626/p6260131.log /home/sg626/p6260131.eng /home/sg626/p6260131.asc /home/sg626/p6260131.pro /home/sg626/p6260131.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 01:49:33 08 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:49:33 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:49:33 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:49:33 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:49:33 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:49:33 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:49:33 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:49:33 08 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:49:33 08 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:49:33 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:49:33 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:49:33 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:49:33 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:49:33 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:49:33 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:49:33 08 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:49:33 08 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:49:33 08 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:49:33 08 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:49:33 08 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:49:33 08 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:49:33 08 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:49:33 08 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:49:33 08 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 01:49:33 08 Feb 2017 UTC 04:37:20 08 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 16118 04:37:20 08 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:40:11 08 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 16326 04:40:11 08 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:40:11 08 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:40:11 08 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:40:11 08 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:40:11 08 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170207184010 ] 04:40:11 08 Feb 2017 UTC: INFO: Base.py(1333): PID:16334 04:40:11 08 Feb 2017 UTC: INFO: Base.py(1375): Started processing 04:40:11 08 Feb 2017 UTC 04:40:11 08 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:40:11 08 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:40:11 08 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:40:11 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:40:11 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:132 calls_made:1 call_cycle:0 04:40:11 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:40:11 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:132 calls_made:1 call_cycle:0 04:40:11 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:40:11 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:132 calls_made:1 call_cycle:0 04:40:11 08 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:132 calls_made:1 call_cycle:0 2250.6320 -15803.7580 02/08/17 04:35:24 UTC) to sdrifter@soest.hawaii.edu 04:40:11 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:132 calls_made:1 call_cycle:0 04:40:11 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:40:11 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:132 calls_made:1 call_cycle:0 04:40:11 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:40:11 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:132 calls_made:1 call_cycle:0 04:40:11 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:40:11 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:132 calls_made:1 call_cycle:0 04:40:11 08 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:40:11 08 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:40:14 08 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:40:14 08 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:40:14 08 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:40:14 08 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:40:14 08 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:40:14 08 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:40:15 08 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0132lz 04:40:15 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0132lz.x00 04:40:15 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0132lz.x01 04:40:15 08 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0132lz.r in process_file_group 04:40:15 08 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260132.log 04:40:15 08 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:40:15 08 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0132dz 04:40:15 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0132dz.x00 04:40:15 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0132dz.x01 04:40:15 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0132dz.x02 04:40:15 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0132dz.x03 04:40:15 08 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0132dz.r in process_file_group 04:40:15 08 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [132] 04:40:15 08 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [132] 04:40:15 08 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260132) for profiles 04:40:15 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 04:40:15 08 Feb 2017 UTC: INFO: QC.py(365): Changed (3/516) 2 205 209 to QC_PROBABLY_BAD because raw temperature spikes 04:40:15 08 Feb 2017 UTC: INFO: QC.py(408): Changed (1/516) 209 to QC_PROBABLY_BAD because raw conductivity spikes 04:40:15 08 Feb 2017 UTC: INFO: QC.py(180): Changed (3/516) 2 205 209 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:40:15 08 Feb 2017 UTC: INFO: QC.py(365): Changed (3/516) 2 205 209 to QC_INTERPOLATED because temperature spikes 04:40:15 08 Feb 2017 UTC: INFO: QC.py(408): Changed (1/516) 209 to QC_INTERPOLATED because conductivity spikes 04:40:15 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/516) 203:207 to QC_BAD because slow apogee CT flow 04:40:15 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/516) 1:6 to QC_BAD because prior to dive start 04:40:15 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3343): SUGGESTION: 132 interp_conductivity data_points between 114 121 % 43.0m SUSPECT unresolved strong conductivity anomaly 04:40:15 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/516) 1:6 203:207 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:40:15 08 Feb 2017 UTC: INFO: QC.py(180): Changed (11/516) 1:6 203:207 to QC_BAD because changed corrected salin implies changed speed 04:40:15 08 Feb 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 516 04:40:16 08 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:40:16 08 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 132 interp_salinity data_points in_between 295 302 % suspect thermal-inertia points 04:40:16 08 Feb 2017 UTC: INFO: QC.py(180): Changed (1/516) 209 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 04:40:16 08 Feb 2017 UTC: INFO: QC.py(180): Changed (1/516) 209 to QC_INTERPOLATED because changed corrected temp implies changed speed 04:40:16 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.31 cm/s 04:40:16 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.96 cm/s 04:40:16 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:40:16 08 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (146/516) 112:115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:40:16 08 Feb 2017 UTC: INFO: QC.py(180): Changed (1/516) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:40:16 08 Feb 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/516) 516 to QC_BAD because slow flow in SBE43 04:40:16 08 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (146/516) 112:115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 04:40:16 08 Feb 2017 UTC: INFO: QC.py(180): Changed (1/516) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:40:16 08 Feb 2017 UTC: INFO: QC.py(180): Changed (11/516) 1:6 203:207 to QC_BAD because changed salinity implies changed optode oxygen 04:40:16 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:40:16 08 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:40:16 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 04:40:16 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 132: Data set size for profile, binned and kkyy files reduced by 11 points, a 2.13% reduction 04:40:16 08 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.132 04:40:16 08 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:40:16 08 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:40:16 08 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:40:16 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 04:40:16 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 04:41:10 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 04:41:11 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 04:41:11 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 04:41:21 08 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:41:21 08 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:41:21 08 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:41:21 08 Feb 2017 UTC /home/sg626/p6260132.log /home/sg626/p6260132.eng /home/sg626/p6260132.asc /home/sg626/p6260132.pro /home/sg626/p6260132.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 04:41:21 08 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:41:21 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:41:21 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:41:21 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:41:21 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:41:21 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:41:21 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:41:21 08 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:41:21 08 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:41:21 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:41:21 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:41:21 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:41:21 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:41:21 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:41:21 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:41:21 08 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:41:21 08 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:41:21 08 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:41:21 08 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:41:21 08 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:41:21 08 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:41:21 08 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:41:21 08 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:41:21 08 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 04:41:21 08 Feb 2017 UTC 07:27:59 08 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 21415 07:27:59 08 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:30:39 08 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 21619 07:30:39 08 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:30:39 08 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:30:39 08 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:30:39 08 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:30:39 08 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170207213038 ] 07:30:39 08 Feb 2017 UTC: INFO: Base.py(1333): PID:21627 07:30:39 08 Feb 2017 UTC: INFO: Base.py(1375): Started processing 07:30:39 08 Feb 2017 UTC 07:30:39 08 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:30:39 08 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:30:39 08 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:30:39 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:30:39 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:133 calls_made:1 call_cycle:0 07:30:39 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:30:39 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:133 calls_made:1 call_cycle:0 07:30:39 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:30:39 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:133 calls_made:1 call_cycle:0 07:30:39 08 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:133 calls_made:1 call_cycle:0 2251.0070 -15803.3010 02/08/17 07:26:01 UTC) to sdrifter@soest.hawaii.edu 07:30:39 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:133 calls_made:1 call_cycle:0 07:30:39 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:30:39 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:133 calls_made:1 call_cycle:0 07:30:39 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:30:39 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:133 calls_made:1 call_cycle:0 07:30:39 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:30:39 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:133 calls_made:1 call_cycle:0 07:30:39 08 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:30:39 08 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:30:42 08 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:30:42 08 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:30:42 08 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:30:42 08 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:30:42 08 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:30:42 08 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:30:43 08 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0133lz 07:30:43 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0133lz.x00 07:30:43 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0133lz.x01 07:30:43 08 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0133lz.r in process_file_group 07:30:43 08 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260133.log 07:30:43 08 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:30:43 08 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0133dz 07:30:43 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0133dz.x00 07:30:43 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0133dz.x01 07:30:43 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0133dz.x02 07:30:43 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0133dz.x03 07:30:43 08 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0133dz.r in process_file_group 07:30:43 08 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [133] 07:30:43 08 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [133] 07:30:43 08 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260133) for profiles 07:30:43 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 07:30:43 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/529) 528 529 to QC_BAD because CT out of water 07:30:43 08 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.147m) 07:30:43 08 Feb 2017 UTC: INFO: QC.py(365): Changed (2/529) 206 528 to QC_PROBABLY_BAD because raw temperature spikes 07:30:43 08 Feb 2017 UTC: INFO: QC.py(408): Changed (1/529) 206 to QC_PROBABLY_BAD because raw conductivity spikes 07:30:43 08 Feb 2017 UTC: INFO: QC.py(180): Changed (2/529) 206 528 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:30:43 08 Feb 2017 UTC: INFO: QC.py(180): Changed (2/529) 528 529 to QC_BAD because changed raw cond implies changed raw salinity 07:30:43 08 Feb 2017 UTC: INFO: QC.py(365): Changed (2/529) 206 528 to QC_INTERPOLATED because temperature spikes 07:30:43 08 Feb 2017 UTC: INFO: QC.py(408): Changed (1/529) 206 to QC_INTERPOLATED because conductivity spikes 07:30:43 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/529) 204:208 to QC_BAD because slow apogee CT flow 07:30:43 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/529) 1:6 to QC_BAD because prior to dive start 07:30:43 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/529) 527 to QC_BAD because end of climb 07:30:43 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/529) 1:6 204:208 527:529 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:30:43 08 Feb 2017 UTC: INFO: QC.py(180): Changed (14/529) 1:6 204:208 527:529 to QC_BAD because changed corrected salin implies changed speed 07:30:44 08 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:30:44 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.23 cm/s 07:30:44 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.08 cm/s 07:30:44 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:30:44 08 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (144/529) 115 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:30:44 08 Feb 2017 UTC: INFO: QC.py(180): Changed (2/529) 206 528 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:30:44 08 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (144/529) 115 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 07:30:44 08 Feb 2017 UTC: INFO: QC.py(180): Changed (2/529) 206 528 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:30:44 08 Feb 2017 UTC: INFO: QC.py(180): Changed (14/529) 1:6 204:208 527:529 to QC_BAD because changed salinity implies changed optode oxygen 07:30:44 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:30:44 08 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:30:44 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 07:30:44 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 133: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.65% reduction 07:30:44 08 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.133 07:30:44 08 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:30:44 08 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:30:44 08 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:30:44 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 07:30:44 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:31:40 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 07:31:40 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:31:40 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:31:51 08 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:31:51 08 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:31:51 08 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:31:51 08 Feb 2017 UTC /home/sg626/p6260133.log /home/sg626/p6260133.eng /home/sg626/p6260133.asc /home/sg626/p6260133.pro /home/sg626/p6260133.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:31:51 08 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:31:51 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:31:51 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:31:51 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:31:51 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:31:51 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:31:51 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:31:51 08 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:31:51 08 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:31:51 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:31:51 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:31:51 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:31:51 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:31:51 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:31:51 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:31:51 08 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:31:51 08 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:31:51 08 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:31:51 08 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:31:51 08 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:31:51 08 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:31:51 08 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:31:51 08 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:31:51 08 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 07:31:51 08 Feb 2017 UTC 10:16:54 08 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 26297 10:16:54 08 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:19:29 08 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 26413 10:19:29 08 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:19:29 08 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:19:29 08 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:19:29 08 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:19:29 08 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170208001928 ] 10:19:29 08 Feb 2017 UTC: INFO: Base.py(1333): PID:26421 10:19:29 08 Feb 2017 UTC: INFO: Base.py(1375): Started processing 10:19:29 08 Feb 2017 UTC 10:19:29 08 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:19:30 08 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:19:30 08 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:19:30 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:19:30 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:134 calls_made:1 call_cycle:0 10:19:30 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:19:30 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:134 calls_made:1 call_cycle:0 10:19:30 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:19:30 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:134 calls_made:1 call_cycle:0 10:19:30 08 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:134 calls_made:1 call_cycle:0 2250.7630 -15803.0060 02/08/17 10:15:00 UTC) to sdrifter@soest.hawaii.edu 10:19:30 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:134 calls_made:1 call_cycle:0 10:19:30 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:19:30 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:134 calls_made:1 call_cycle:0 10:19:30 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:19:30 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:134 calls_made:1 call_cycle:0 10:19:30 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:19:30 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:134 calls_made:1 call_cycle:0 10:19:30 08 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:19:30 08 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:19:32 08 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:19:33 08 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:19:33 08 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:19:33 08 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:19:33 08 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:19:33 08 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:19:33 08 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0134lz 10:19:33 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0134lz.x00 10:19:33 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0134lz.x01 10:19:33 08 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0134lz.r in process_file_group 10:19:33 08 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260134.log 10:19:33 08 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:19:33 08 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0134dz 10:19:33 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0134dz.x00 10:19:33 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0134dz.x01 10:19:33 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0134dz.x02 10:19:33 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0134dz.x03 10:19:33 08 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0134dz.r in process_file_group 10:19:33 08 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [134] 10:19:33 08 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [134] 10:19:33 08 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260134) for profiles 10:19:33 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 10:19:33 08 Feb 2017 UTC: INFO: QC.py(365): Changed (1/502) 197 to QC_PROBABLY_BAD because raw temperature spikes 10:19:33 08 Feb 2017 UTC: INFO: QC.py(408): Changed (2/502) 198 299 to QC_PROBABLY_BAD because raw conductivity spikes 10:19:33 08 Feb 2017 UTC: INFO: QC.py(180): Changed (1/502) 197 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 10:19:33 08 Feb 2017 UTC: INFO: QC.py(180): Changed (2/502) 198 299 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 10:19:33 08 Feb 2017 UTC: INFO: QC.py(365): Changed (1/502) 197 to QC_INTERPOLATED because temperature spikes 10:19:33 08 Feb 2017 UTC: INFO: QC.py(408): Changed (2/502) 198 299 to QC_INTERPOLATED because conductivity spikes 10:19:33 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/502) 196:200 to QC_BAD because slow apogee CT flow 10:19:33 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/502) 1:6 to QC_BAD because prior to dive start 10:19:33 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/502) 1:6 196:200 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:19:33 08 Feb 2017 UTC: INFO: QC.py(180): Changed (11/502) 1:6 196:200 to QC_BAD because changed corrected salin implies changed speed 10:19:34 08 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 10:19:34 08 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 134 interp_salinity data_points in_between 249 293 % suspect thermal-inertia points 280 10:19:34 08 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 134 interp_salinity data_points in_between 327 338 % suspect thermal-inertia points 332:334 10:19:34 08 Feb 2017 UTC: INFO: QC.py(180): Changed (1/502) 299 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 10:19:34 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.16 cm/s 10:19:34 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.30 cm/s 10:19:34 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:19:34 08 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (144/502) 109 110 112:115 117:120 122:125 127:130 132:135 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:19:34 08 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (144/502) 109 110 112:115 117:120 122:125 127:130 132:135 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 10:19:34 08 Feb 2017 UTC: INFO: QC.py(180): Changed (11/502) 1:6 196:200 to QC_BAD because changed salinity implies changed optode oxygen 10:19:34 08 Feb 2017 UTC: INFO: QC.py(180): Changed (1/502) 299 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 10:19:34 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:19:34 08 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:19:34 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 10:19:34 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 134: Data set size for profile, binned and kkyy files reduced by 11 points, a 2.19% reduction 10:19:34 08 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.134 10:19:34 08 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:19:34 08 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:19:34 08 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:19:35 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 10:19:35 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 10:20:31 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 10:20:31 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 10:20:31 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 10:20:41 08 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:20:41 08 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:20:41 08 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 10:20:41 08 Feb 2017 UTC /home/sg626/p6260134.log /home/sg626/p6260134.eng /home/sg626/p6260134.asc /home/sg626/p6260134.pro /home/sg626/p6260134.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 10:20:41 08 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:20:41 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:20:41 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:20:41 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:20:41 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:20:41 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:20:41 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:20:41 08 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:20:41 08 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:20:41 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:20:41 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:20:41 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:20:41 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:20:41 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:20:41 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:20:41 08 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:20:41 08 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:20:41 08 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:20:41 08 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:20:41 08 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:20:41 08 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:20:41 08 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:20:41 08 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:20:41 08 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 10:20:41 08 Feb 2017 UTC 13:32:53 08 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 4768 13:32:53 08 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:35:33 08 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 5005 13:35:33 08 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:35:33 08 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:35:33 08 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:35:33 08 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:35:33 08 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170208033533 ] 13:35:33 08 Feb 2017 UTC: INFO: Base.py(1333): PID:5013 13:35:33 08 Feb 2017 UTC: INFO: Base.py(1375): Started processing 13:35:33 08 Feb 2017 UTC 13:35:33 08 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:35:34 08 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:35:34 08 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:35:34 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:35:34 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:135 calls_made:1 call_cycle:0 13:35:34 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:35:34 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:135 calls_made:1 call_cycle:0 13:35:34 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:35:34 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:135 calls_made:1 call_cycle:0 13:35:34 08 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:135 calls_made:1 call_cycle:0 2250.7410 -15802.9070 02/08/17 13:30:55 UTC) to sdrifter@soest.hawaii.edu 13:35:34 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:135 calls_made:1 call_cycle:0 13:35:34 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:35:34 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:135 calls_made:1 call_cycle:0 13:35:34 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:35:34 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:135 calls_made:1 call_cycle:0 13:35:34 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:35:34 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:135 calls_made:1 call_cycle:0 13:35:34 08 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:35:34 08 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:35:36 08 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:35:37 08 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:35:37 08 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:35:37 08 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:35:37 08 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:35:37 08 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:35:37 08 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0135lz 13:35:37 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0135lz.x00 13:35:37 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0135lz.x01 13:35:37 08 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0135lz.r in process_file_group 13:35:37 08 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260135.log 13:35:37 08 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:35:37 08 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0135dz 13:35:37 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0135dz.x00 13:35:37 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0135dz.x01 13:35:37 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0135dz.x02 13:35:37 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0135dz.x03 13:35:37 08 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0135dz.r in process_file_group 13:35:38 08 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [135] 13:35:38 08 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [135] 13:35:38 08 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260135) for profiles 13:35:38 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:35:38 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/592) 592 to QC_BAD because CT out of water 13:35:38 08 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.020m) 13:35:38 08 Feb 2017 UTC: INFO: QC.py(365): Changed (5/592) 2 118 229 590 591 to QC_PROBABLY_BAD because raw temperature spikes 13:35:38 08 Feb 2017 UTC: INFO: QC.py(408): Changed (1/592) 118 to QC_PROBABLY_BAD because raw conductivity spikes 13:35:38 08 Feb 2017 UTC: INFO: QC.py(180): Changed (5/592) 2 118 229 590 591 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:35:38 08 Feb 2017 UTC: INFO: QC.py(180): Changed (1/592) 592 to QC_BAD because changed raw cond implies changed raw salinity 13:35:38 08 Feb 2017 UTC: INFO: QC.py(365): Changed (5/592) 2 118 229 590 591 to QC_INTERPOLATED because temperature spikes 13:35:38 08 Feb 2017 UTC: INFO: QC.py(408): Changed (1/592) 118 to QC_INTERPOLATED because conductivity spikes 13:35:38 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (4/592) 228:231 to QC_BAD because slow apogee CT flow 13:35:38 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/592) 1:6 to QC_BAD because prior to dive start 13:35:38 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/592) 1:6 228:231 592 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:35:38 08 Feb 2017 UTC: INFO: QC.py(180): Changed (11/592) 1:6 228:231 592 to QC_BAD because changed corrected salin implies changed speed 13:35:38 08 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:35:38 08 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 135 interp_salinity data_points in_between 272 337 % suspect thermal-inertia points 324 13:35:38 08 Feb 2017 UTC: INFO: QC.py(180): Changed (3/592) 118 590 591 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 13:35:38 08 Feb 2017 UTC: INFO: QC.py(180): Changed (3/592) 118 590 591 to QC_INTERPOLATED because changed corrected temp implies changed speed 13:35:38 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.87 cm/s 13:35:38 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.28 cm/s 13:35:38 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:35:38 08 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (172/592) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:35:38 08 Feb 2017 UTC: INFO: QC.py(180): Changed (4/592) 2 118 590 591 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:35:38 08 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (172/592) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:35:38 08 Feb 2017 UTC: INFO: QC.py(180): Changed (4/592) 2 118 590 591 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:35:38 08 Feb 2017 UTC: INFO: QC.py(180): Changed (11/592) 1:6 228:231 592 to QC_BAD because changed salinity implies changed optode oxygen 13:35:38 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:35:38 08 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 13:35:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:35:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:35:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:35:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:35:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:35:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:35:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:35:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:35:39 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:35:39 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:35:39 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:35:39 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:35:39 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:35:39 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:35:39 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:35:39 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:35:39 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:35:39 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:35:39 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:35:39 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:35:39 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:35:39 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:35:39 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:35:39 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:35:39 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:35:39 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:35:39 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:35:39 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:35:39 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:35:39 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:35:39 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:35:39 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:35:39 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 135: Data set size for profile, binned and kkyy files reduced by 11 points, a 1.86% reduction 13:35:39 08 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.135 13:35:39 08 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:35:39 08 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:35:39 08 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:35:39 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:35:39 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:36:35 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 13:36:35 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:36:35 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:36:46 08 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:36:46 08 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:36:46 08 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:36:46 08 Feb 2017 UTC /home/sg626/p6260135.log /home/sg626/p6260135.eng /home/sg626/p6260135.asc /home/sg626/p6260135.pro /home/sg626/p6260135.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:36:46 08 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:36:46 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:36:46 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:36:46 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:36:46 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:36:46 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:36:46 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:36:46 08 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:36:46 08 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:36:46 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:36:46 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:36:46 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:36:46 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:36:46 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:36:46 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:36:46 08 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:36:46 08 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:36:46 08 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:36:46 08 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:36:46 08 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:36:46 08 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:36:46 08 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:36:46 08 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:36:46 08 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 13:36:46 08 Feb 2017 UTC 16:20:55 08 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 17529 16:20:55 08 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:23:27 08 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 17753 16:23:27 08 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:23:27 08 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:23:27 08 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:23:27 08 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:23:27 08 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170208062327 ] 16:23:27 08 Feb 2017 UTC: INFO: Base.py(1333): PID:17761 16:23:27 08 Feb 2017 UTC: INFO: Base.py(1375): Started processing 16:23:27 08 Feb 2017 UTC 16:23:27 08 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:23:28 08 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:23:28 08 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:23:28 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:23:28 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:136 calls_made:1 call_cycle:0 16:23:28 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:23:28 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:136 calls_made:1 call_cycle:0 16:23:28 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:23:28 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:136 calls_made:1 call_cycle:0 16:23:28 08 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:136 calls_made:1 call_cycle:0 2250.6010 -15803.0530 02/08/17 16:19:00 UTC) to sdrifter@soest.hawaii.edu 16:23:28 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:136 calls_made:1 call_cycle:0 16:23:28 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:23:28 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:136 calls_made:1 call_cycle:0 16:23:28 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:23:28 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:136 calls_made:1 call_cycle:0 16:23:28 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:23:28 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:136 calls_made:1 call_cycle:0 16:23:28 08 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:23:28 08 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:23:31 08 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:23:31 08 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:23:31 08 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:23:31 08 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:23:31 08 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:23:31 08 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:23:31 08 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0136lz 16:23:31 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0136lz.x00 16:23:31 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0136lz.x01 16:23:31 08 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0136lz.r in process_file_group 16:23:31 08 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260136.log 16:23:31 08 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:23:31 08 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0136dz 16:23:31 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0136dz.x00 16:23:31 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0136dz.x01 16:23:31 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0136dz.x02 16:23:31 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0136dz.x03 16:23:31 08 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0136dz.r in process_file_group 16:23:32 08 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [136] 16:23:32 08 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [136] 16:23:32 08 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260136) for profiles 16:23:32 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:23:32 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/503) 502 to QC_BAD because CT out of water 16:23:32 08 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.030m) 16:23:32 08 Feb 2017 UTC: INFO: QC.py(365): Changed (4/503) 2:4 502 to QC_PROBABLY_BAD because raw temperature spikes 16:23:32 08 Feb 2017 UTC: INFO: QC.py(180): Changed (4/503) 2:4 502 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:23:32 08 Feb 2017 UTC: INFO: QC.py(180): Changed (1/503) 502 to QC_BAD because changed raw cond implies changed raw salinity 16:23:32 08 Feb 2017 UTC: INFO: QC.py(365): Changed (4/503) 2:4 502 to QC_INTERPOLATED because temperature spikes 16:23:32 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/503) 197:201 to QC_BAD because slow apogee CT flow 16:23:32 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/503) 1:6 to QC_BAD because prior to dive start 16:23:32 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/503) 503 to QC_BAD because end of climb 16:23:32 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/503) 1:6 197:201 502 503 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:23:32 08 Feb 2017 UTC: INFO: QC.py(180): Changed (13/503) 1:6 197:201 502 503 to QC_BAD because changed corrected salin implies changed speed 16:23:32 08 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:23:32 08 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 136 interp_salinity data_points in_between 290 305 % suspect thermal-inertia points 301 302 16:23:32 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.00 cm/s 16:23:32 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.15 cm/s 16:23:32 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:23:32 08 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (143/503) 109 110 112:115 117:120 122:125 127:130 132:135 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:23:32 08 Feb 2017 UTC: INFO: QC.py(180): Changed (4/503) 2:4 502 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:23:32 08 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (143/503) 109 110 112:115 117:120 122:125 127:130 132:135 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:23:32 08 Feb 2017 UTC: INFO: QC.py(180): Changed (4/503) 2:4 502 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:23:32 08 Feb 2017 UTC: INFO: QC.py(180): Changed (13/503) 1:6 197:201 502 503 to QC_BAD because changed salinity implies changed optode oxygen 16:23:32 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:23:32 08 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 16:23:32 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:23:32 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:23:32 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:23:32 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:23:32 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:23:32 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:23:32 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:23:32 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:23:33 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:23:33 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:23:33 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:23:33 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:23:33 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:23:33 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:23:33 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:23:33 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:23:33 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:23:33 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:23:33 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:23:33 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:23:33 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:23:33 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:23:33 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:23:33 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:23:33 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:23:33 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:23:33 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:23:33 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:23:33 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:23:33 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:23:33 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:23:33 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:23:33 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 136: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.58% reduction 16:23:33 08 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.136 16:23:33 08 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:23:33 08 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:23:33 08 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:23:33 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:23:33 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:24:29 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 16:24:30 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:24:30 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:24:40 08 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:24:40 08 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:24:40 08 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:24:40 08 Feb 2017 UTC /home/sg626/p6260136.log /home/sg626/p6260136.eng /home/sg626/p6260136.asc /home/sg626/p6260136.pro /home/sg626/p6260136.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:24:40 08 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:24:40 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:24:40 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:24:40 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:24:40 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:24:40 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:24:40 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:24:40 08 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:24:40 08 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:24:40 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:24:40 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:24:40 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:24:40 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:24:40 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:24:40 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:24:40 08 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:24:40 08 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:24:40 08 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:24:40 08 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:24:40 08 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:24:40 08 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:24:40 08 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:24:40 08 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:24:40 08 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 16:24:40 08 Feb 2017 UTC 19:08:05 08 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 30521 19:08:05 08 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:10:33 08 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 30823 19:10:33 08 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:10:33 08 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:10:33 08 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:10:33 08 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:10:33 08 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170208091033 ] 19:10:33 08 Feb 2017 UTC: INFO: Base.py(1333): PID:30831 19:10:33 08 Feb 2017 UTC: INFO: Base.py(1375): Started processing 19:10:33 08 Feb 2017 UTC 19:10:33 08 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:10:34 08 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:10:34 08 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:10:34 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:10:34 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:137 calls_made:1 call_cycle:0 19:10:34 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:10:34 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:137 calls_made:1 call_cycle:0 19:10:34 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:10:34 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:137 calls_made:1 call_cycle:0 19:10:34 08 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:137 calls_made:1 call_cycle:0 2250.8760 -15802.9690 02/08/17 19:06:13 UTC) to sdrifter@soest.hawaii.edu 19:10:34 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:137 calls_made:1 call_cycle:0 19:10:34 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:10:34 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:137 calls_made:1 call_cycle:0 19:10:34 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:10:34 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:137 calls_made:1 call_cycle:0 19:10:34 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:10:34 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:137 calls_made:1 call_cycle:0 19:10:34 08 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:10:34 08 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:10:37 08 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:10:37 08 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:10:37 08 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:10:37 08 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:10:37 08 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:10:37 08 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:10:37 08 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0137lz 19:10:37 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0137lz.x00 19:10:37 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0137lz.x01 19:10:37 08 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0137lz.r in process_file_group 19:10:37 08 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260137.log 19:10:37 08 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:10:37 08 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0137dz 19:10:37 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0137dz.x00 19:10:37 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0137dz.x01 19:10:37 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0137dz.x02 19:10:37 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0137dz.x03 19:10:37 08 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0137dz.r in process_file_group 19:10:38 08 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [137] 19:10:38 08 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [137] 19:10:38 08 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260137) for profiles 19:10:38 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 19:10:38 08 Feb 2017 UTC: INFO: QC.py(365): Changed (1/498) 497 to QC_PROBABLY_BAD because raw temperature spikes 19:10:38 08 Feb 2017 UTC: INFO: QC.py(180): Changed (1/498) 497 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:10:38 08 Feb 2017 UTC: INFO: QC.py(365): Changed (1/498) 497 to QC_INTERPOLATED because temperature spikes 19:10:38 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/498) 198:202 to QC_BAD because slow apogee CT flow 19:10:38 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/498) 1:6 to QC_BAD because prior to dive start 19:10:38 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/498) 497 498 to QC_BAD because end of climb 19:10:38 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/498) 1:6 198:202 497 498 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:10:38 08 Feb 2017 UTC: INFO: QC.py(180): Changed (13/498) 1:6 198:202 497 498 to QC_BAD because changed corrected salin implies changed speed 19:10:38 08 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:10:38 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.84 cm/s 19:10:38 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.27 cm/s 19:10:38 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:10:38 08 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (145/498) 110 112:115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:10:38 08 Feb 2017 UTC: INFO: QC.py(180): Changed (1/498) 497 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 19:10:38 08 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (145/498) 110 112:115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 19:10:38 08 Feb 2017 UTC: INFO: QC.py(180): Changed (1/498) 497 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 19:10:38 08 Feb 2017 UTC: INFO: QC.py(180): Changed (13/498) 1:6 198:202 497 498 to QC_BAD because changed salinity implies changed optode oxygen 19:10:38 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:10:38 08 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:10:38 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 19:10:39 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 137: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.61% reduction 19:10:39 08 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.137 19:10:39 08 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:10:39 08 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:10:39 08 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:10:39 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 19:10:39 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 19:11:36 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 19:11:36 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 19:11:36 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 19:11:47 08 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:11:47 08 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:11:47 08 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:11:47 08 Feb 2017 UTC /home/sg626/p6260137.log /home/sg626/p6260137.eng /home/sg626/p6260137.asc /home/sg626/p6260137.pro /home/sg626/p6260137.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 19:11:47 08 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:11:47 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:11:47 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:11:47 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:11:47 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:11:47 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:11:47 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:11:47 08 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:11:47 08 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:11:47 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:11:47 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:11:47 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:11:47 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:11:47 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:11:47 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:11:47 08 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:11:47 08 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:11:47 08 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:11:47 08 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:11:47 08 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:11:47 08 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:11:47 08 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:11:47 08 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:11:47 08 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 19:11:47 08 Feb 2017 UTC 22:02:59 08 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 9328 22:02:59 08 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:05:56 08 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 9453 22:05:56 08 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:05:56 08 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:05:56 08 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:05:56 08 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:05:56 08 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170208120556 ] 22:05:56 08 Feb 2017 UTC: INFO: Base.py(1333): PID:9460 22:05:57 08 Feb 2017 UTC: INFO: Base.py(1375): Started processing 22:05:57 08 Feb 2017 UTC 22:05:57 08 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:05:57 08 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:05:57 08 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:05:57 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:05:57 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:138 calls_made:3 call_cycle:0 22:05:57 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:05:57 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:138 calls_made:3 call_cycle:0 22:05:57 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:05:57 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:138 calls_made:3 call_cycle:0 22:05:57 08 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:138 calls_made:3 call_cycle:0 2250.7980 -15802.9790 02/08/17 21:57:18 UTC) to sdrifter@soest.hawaii.edu 22:05:57 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:138 calls_made:3 call_cycle:0 22:05:57 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:05:57 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:138 calls_made:3 call_cycle:0 22:05:57 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:05:57 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:138 calls_made:3 call_cycle:0 22:05:57 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:05:57 08 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:138 calls_made:3 call_cycle:0 22:05:57 08 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:05:57 08 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:06:00 08 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:06:00 08 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:06:00 08 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:06:00 08 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:06:00 08 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:06:00 08 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:06:00 08 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0138lz 22:06:00 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0138lz.x00 22:06:00 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0138lz.x01 22:06:00 08 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0138lz.r in process_file_group 22:06:00 08 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260138.log 22:06:00 08 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 22:06:00 08 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0138dz 22:06:00 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0138dz.x00 22:06:00 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0138dz.x01 22:06:00 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0138dz.x02 22:06:00 08 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0138dz.x03 22:06:00 08 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0138dz.r in process_file_group 22:06:01 08 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [138] 22:06:01 08 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [138] 22:06:01 08 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260138) for profiles 22:06:01 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 22:06:01 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/519) 518 519 to QC_BAD because CT out of water 22:06:01 08 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.078m) 22:06:01 08 Feb 2017 UTC: INFO: QC.py(365): Changed (4/519) 4 5 201 216 to QC_PROBABLY_BAD because raw temperature spikes 22:06:01 08 Feb 2017 UTC: INFO: QC.py(377): Changed (1/519) 518 to QC_BAD because raw salinity below bound 22:06:01 08 Feb 2017 UTC: INFO: QC.py(180): Changed (4/519) 4 5 201 216 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 22:06:01 08 Feb 2017 UTC: INFO: QC.py(180): Changed (1/519) 519 to QC_BAD because changed raw cond implies changed raw salinity 22:06:01 08 Feb 2017 UTC: INFO: QC.py(365): Changed (4/519) 4 5 201 216 to QC_INTERPOLATED because temperature spikes 22:06:01 08 Feb 2017 UTC: INFO: QC.py(377): Changed (1/519) 518 to QC_BAD because salinity below bound 22:06:01 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/519) 208:212 to QC_BAD because slow apogee CT flow 22:06:01 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/519) 1:6 to QC_BAD because prior to dive start 22:06:01 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/519) 1:6 208:212 518 519 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:06:01 08 Feb 2017 UTC: INFO: QC.py(180): Changed (13/519) 1:6 208:212 518 519 to QC_BAD because changed corrected salin implies changed speed 22:06:02 08 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:06:02 08 Feb 2017 UTC: INFO: QC.py(180): Changed (2/519) 201 216 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 22:06:02 08 Feb 2017 UTC: INFO: QC.py(180): Changed (2/519) 201 216 to QC_INTERPOLATED because changed corrected temp implies changed speed 22:06:02 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.50 cm/s 22:06:02 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.02 cm/s 22:06:02 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:06:02 08 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (146/519) 118:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:06:02 08 Feb 2017 UTC: INFO: QC.py(180): Changed (4/519) 4 5 201 216 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 22:06:02 08 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (146/519) 118:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 22:06:02 08 Feb 2017 UTC: INFO: QC.py(180): Changed (4/519) 4 5 201 216 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 22:06:02 08 Feb 2017 UTC: INFO: QC.py(180): Changed (13/519) 1:6 208:212 518 519 to QC_BAD because changed salinity implies changed optode oxygen 22:06:02 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:06:02 08 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 22:06:02 08 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 22:06:02 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 138: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.50% reduction 22:06:02 08 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.138 22:06:02 08 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:06:02 08 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:06:02 08 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:06:02 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 22:06:02 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 22:07:00 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 22:07:00 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 22:07:00 08 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 22:07:11 08 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:07:11 08 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:07:11 08 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:07:11 08 Feb 2017 UTC /home/sg626/p6260138.log /home/sg626/p6260138.eng /home/sg626/p6260138.asc /home/sg626/p6260138.pro /home/sg626/p6260138.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 22:07:11 08 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:07:11 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:07:11 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:07:11 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:07:11 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:07:11 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:07:11 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:07:11 08 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:07:11 08 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:07:11 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:07:11 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:07:11 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:07:11 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:07:11 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:07:11 08 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:07:11 08 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:07:11 08 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:07:11 08 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:07:11 08 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:07:11 08 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:07:11 08 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:07:11 08 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:07:11 08 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:07:11 08 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 22:07:11 08 Feb 2017 UTC 01:14:29 09 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 17467 01:14:29 09 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 01:17:37 09 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 17637 01:17:37 09 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:17:37 09 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:17:37 09 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:17:37 09 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:17:37 09 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170208151736 ] 01:17:37 09 Feb 2017 UTC: INFO: Base.py(1333): PID:17645 01:17:37 09 Feb 2017 UTC: INFO: Base.py(1375): Started processing 01:17:37 09 Feb 2017 UTC 01:17:37 09 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:17:37 09 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:17:37 09 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:17:37 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:17:37 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:139 calls_made:1 call_cycle:0 01:17:37 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:17:37 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:139 calls_made:1 call_cycle:0 01:17:37 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:17:37 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:139 calls_made:1 call_cycle:0 01:17:37 09 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:139 calls_made:1 call_cycle:0 2250.7090 -15803.0630 02/09/17 01:12:30 UTC) to sdrifter@soest.hawaii.edu 01:17:38 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:139 calls_made:1 call_cycle:0 01:17:38 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:17:38 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:139 calls_made:1 call_cycle:0 01:17:38 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:17:38 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:139 calls_made:1 call_cycle:0 01:17:38 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:17:38 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:139 calls_made:1 call_cycle:0 01:17:38 09 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:17:38 09 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:17:40 09 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:17:41 09 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:17:41 09 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:17:41 09 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:17:41 09 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:17:41 09 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:17:41 09 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0139lz 01:17:41 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0139lz.x00 01:17:41 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0139lz.x01 01:17:41 09 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0139lz.r in process_file_group 01:17:41 09 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260139.log 01:17:41 09 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:17:41 09 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0139dz 01:17:41 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0139dz.x00 01:17:41 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0139dz.x01 01:17:41 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0139dz.x02 01:17:41 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0139dz.x03 01:17:41 09 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0139dz.r in process_file_group 01:17:41 09 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [139] 01:17:41 09 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [139] 01:17:41 09 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260139) for profiles 01:17:41 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:17:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/594) 594 to QC_BAD because CT out of water 01:17:42 09 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.002m) 01:17:42 09 Feb 2017 UTC: INFO: QC.py(365): Changed (3/594) 2:4 to QC_PROBABLY_BAD because raw temperature spikes 01:17:42 09 Feb 2017 UTC: INFO: QC.py(408): Changed (1/594) 4 to QC_PROBABLY_BAD because raw conductivity spikes 01:17:42 09 Feb 2017 UTC: INFO: QC.py(180): Changed (3/594) 2:4 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:17:42 09 Feb 2017 UTC: INFO: QC.py(180): Changed (1/594) 594 to QC_BAD because changed raw cond implies changed raw salinity 01:17:42 09 Feb 2017 UTC: INFO: QC.py(365): Changed (3/594) 2:4 to QC_INTERPOLATED because temperature spikes 01:17:42 09 Feb 2017 UTC: INFO: QC.py(408): Changed (1/594) 4 to QC_INTERPOLATED because conductivity spikes 01:17:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/594) 222:226 to QC_BAD because slow apogee CT flow 01:17:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/594) 1:6 to QC_BAD because prior to dive start 01:17:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/594) 1:6 222:226 594 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:17:42 09 Feb 2017 UTC: INFO: QC.py(180): Changed (12/594) 1:6 222:226 594 to QC_BAD because changed corrected salin implies changed speed 01:17:42 09 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:17:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.07 cm/s 01:17:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.68 cm/s 01:17:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:17:42 09 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (162/594) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:17:42 09 Feb 2017 UTC: INFO: QC.py(180): Changed (3/594) 2:4 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 01:17:42 09 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (162/594) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 01:17:42 09 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/594) 594 to QC_BAD because bad aa4330 oyxgen 01:17:42 09 Feb 2017 UTC: INFO: QC.py(180): Changed (3/594) 2:4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 01:17:42 09 Feb 2017 UTC: INFO: QC.py(180): Changed (11/594) 1:6 222:226 to QC_BAD because changed salinity implies changed optode oxygen 01:17:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:17:42 09 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:17:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:17:43 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 139: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.02% reduction 01:17:43 09 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.139 01:17:43 09 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.139 01:17:43 09 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:17:43 09 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:17:43 09 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:17:43 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:17:43 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 01:18:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 01:18:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 01:18:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 01:18:53 09 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:18:53 09 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:18:53 09 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:18:53 09 Feb 2017 UTC /home/sg626/p6260139.log /home/sg626/p6260139.eng /home/sg626/p6260139.asc /home/sg626/p6260139.pro /home/sg626/p6260139.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 01:18:53 09 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:18:53 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:18:53 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:18:53 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:18:53 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:18:53 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:18:53 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:18:53 09 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:18:53 09 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:18:53 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:18:53 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:18:53 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:18:53 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:18:53 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:18:53 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:18:53 09 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:18:53 09 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:18:53 09 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:18:53 09 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:18:53 09 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:18:53 09 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:18:53 09 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:18:53 09 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:18:53 09 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 01:18:53 09 Feb 2017 UTC 04:22:51 09 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 26046 04:22:51 09 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:25:33 09 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 26215 04:25:33 09 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:25:33 09 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:25:33 09 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:25:33 09 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:25:33 09 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170208182533 ] 04:25:33 09 Feb 2017 UTC: INFO: Base.py(1333): PID:26225 04:25:33 09 Feb 2017 UTC: INFO: Base.py(1375): Started processing 04:25:33 09 Feb 2017 UTC 04:25:33 09 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:25:34 09 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:25:34 09 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:25:34 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:25:34 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:140 calls_made:1 call_cycle:0 04:25:34 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:25:34 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:140 calls_made:1 call_cycle:0 04:25:34 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:25:34 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:140 calls_made:1 call_cycle:0 04:25:34 09 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:140 calls_made:1 call_cycle:0 2252.7470 -15802.6600 02/09/17 04:20:57 UTC) to sdrifter@soest.hawaii.edu 04:25:34 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:140 calls_made:1 call_cycle:0 04:25:34 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:25:34 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:140 calls_made:1 call_cycle:0 04:25:34 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:25:34 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:140 calls_made:1 call_cycle:0 04:25:34 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:25:34 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:140 calls_made:1 call_cycle:0 04:25:34 09 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:25:34 09 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:25:37 09 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:25:37 09 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:25:37 09 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:25:37 09 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:25:37 09 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:25:37 09 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:25:38 09 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0140lz 04:25:38 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0140lz.x00 04:25:38 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0140lz.x01 04:25:38 09 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0140lz.r in process_file_group 04:25:38 09 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260140.log 04:25:38 09 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:25:38 09 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0140dz 04:25:38 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0140dz.x00 04:25:38 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0140dz.x01 04:25:38 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0140dz.x02 04:25:38 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0140dz.x03 04:25:38 09 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0140dz.r in process_file_group 04:25:38 09 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [140] 04:25:38 09 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [140] 04:25:38 09 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260140) for profiles 04:25:38 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 04:25:38 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/555) 555 to QC_BAD because CT out of water 04:25:38 09 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.013m) 04:25:38 09 Feb 2017 UTC: INFO: QC.py(365): Changed (3/555) 3 221 222 to QC_PROBABLY_BAD because raw temperature spikes 04:25:38 09 Feb 2017 UTC: INFO: QC.py(408): Changed (1/555) 221 to QC_PROBABLY_BAD because raw conductivity spikes 04:25:38 09 Feb 2017 UTC: INFO: QC.py(180): Changed (3/555) 3 221 222 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:25:38 09 Feb 2017 UTC: INFO: QC.py(180): Changed (1/555) 555 to QC_BAD because changed raw cond implies changed raw salinity 04:25:38 09 Feb 2017 UTC: INFO: QC.py(365): Changed (3/555) 3 221 222 to QC_INTERPOLATED because temperature spikes 04:25:38 09 Feb 2017 UTC: INFO: QC.py(408): Changed (1/555) 221 to QC_INTERPOLATED because conductivity spikes 04:25:38 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/555) 219:223 to QC_BAD because slow apogee CT flow 04:25:38 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/555) 1:6 to QC_BAD because prior to dive start 04:25:38 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/555) 554 to QC_BAD because end of climb 04:25:38 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/555) 1:6 219:223 554 555 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:25:38 09 Feb 2017 UTC: INFO: QC.py(180): Changed (13/555) 1:6 219:223 554 555 to QC_BAD because changed corrected salin implies changed speed 04:25:39 09 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:25:39 09 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 140 interp_salinity data_points in_between 361 406 % suspect thermal-inertia points 366 04:25:39 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.71 cm/s 04:25:39 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.88 cm/s 04:25:39 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:25:39 09 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (165/555) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:25:39 09 Feb 2017 UTC: INFO: QC.py(180): Changed (2/555) 3 221 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:25:39 09 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (165/555) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 04:25:39 09 Feb 2017 UTC: INFO: QC.py(180): Changed (2/555) 3 221 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:25:39 09 Feb 2017 UTC: INFO: QC.py(180): Changed (13/555) 1:6 219:223 554 555 to QC_BAD because changed salinity implies changed optode oxygen 04:25:39 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:25:39 09 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:25:39 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 04:25:39 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 140: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.34% reduction 04:25:39 09 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.140 04:25:39 09 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:25:39 09 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:25:39 09 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:25:39 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 04:25:39 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 04:26:37 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 04:26:38 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 04:26:38 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 04:26:49 09 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:26:49 09 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:26:49 09 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:26:49 09 Feb 2017 UTC /home/sg626/p6260140.log /home/sg626/p6260140.eng /home/sg626/p6260140.asc /home/sg626/p6260140.pro /home/sg626/p6260140.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 04:26:49 09 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:26:49 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:26:49 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:26:49 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:26:49 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:26:49 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:26:49 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:26:49 09 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:26:49 09 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:26:49 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:26:49 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:26:49 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:26:49 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:26:49 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:26:49 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:26:49 09 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:26:49 09 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:26:49 09 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:26:49 09 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:26:49 09 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:26:49 09 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:26:49 09 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:26:49 09 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:26:49 09 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 04:26:49 09 Feb 2017 UTC 07:33:58 09 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 3569 07:33:58 09 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:36:36 09 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 3735 07:36:36 09 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:36:36 09 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:36:36 09 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:36:36 09 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:36:36 09 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170208213636 ] 07:36:36 09 Feb 2017 UTC: INFO: Base.py(1333): PID:3743 07:36:36 09 Feb 2017 UTC: INFO: Base.py(1375): Started processing 07:36:36 09 Feb 2017 UTC 07:36:36 09 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:36:37 09 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:36:37 09 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:36:37 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:36:37 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:141 calls_made:1 call_cycle:0 07:36:37 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:36:37 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:141 calls_made:1 call_cycle:0 07:36:37 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:36:37 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:141 calls_made:1 call_cycle:0 07:36:37 09 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:141 calls_made:1 call_cycle:0 2254.4790 -15802.0580 02/09/17 07:32:00 UTC) to sdrifter@soest.hawaii.edu 07:36:37 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:141 calls_made:1 call_cycle:0 07:36:37 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:36:37 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:141 calls_made:1 call_cycle:0 07:36:37 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:36:37 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:141 calls_made:1 call_cycle:0 07:36:37 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:36:37 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:141 calls_made:1 call_cycle:0 07:36:37 09 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:36:37 09 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:36:39 09 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:36:40 09 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:36:40 09 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:36:40 09 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:36:40 09 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:36:40 09 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:36:40 09 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0141lz 07:36:40 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0141lz.x00 07:36:40 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0141lz.x01 07:36:40 09 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0141lz.r in process_file_group 07:36:40 09 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260141.log 07:36:40 09 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:36:40 09 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0141dz 07:36:40 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0141dz.x00 07:36:40 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0141dz.x01 07:36:40 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0141dz.x02 07:36:40 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0141dz.x03 07:36:40 09 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0141dz.r in process_file_group 07:36:41 09 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [141] 07:36:41 09 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [141] 07:36:41 09 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260141) for profiles 07:36:41 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 07:36:41 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/565) 565 to QC_BAD because CT out of water 07:36:41 09 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.081m) 07:36:41 09 Feb 2017 UTC: INFO: QC.py(365): Changed (2/565) 3 4 to QC_PROBABLY_BAD because raw temperature spikes 07:36:41 09 Feb 2017 UTC: INFO: QC.py(180): Changed (2/565) 3 4 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:36:41 09 Feb 2017 UTC: INFO: QC.py(180): Changed (1/565) 565 to QC_BAD because changed raw cond implies changed raw salinity 07:36:41 09 Feb 2017 UTC: INFO: QC.py(365): Changed (2/565) 3 4 to QC_INTERPOLATED because temperature spikes 07:36:41 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/565) 222:226 to QC_BAD because slow apogee CT flow 07:36:41 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/565) 1:6 to QC_BAD because prior to dive start 07:36:41 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/565) 1:6 222:226 565 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:36:41 09 Feb 2017 UTC: INFO: QC.py(180): Changed (12/565) 1:6 222:226 565 to QC_BAD because changed corrected salin implies changed speed 07:36:41 09 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:36:41 09 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 141 interp_salinity data_points in_between 308 332 % suspect thermal-inertia points 330:332 07:36:41 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.29 cm/s 07:36:41 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.14 cm/s 07:36:41 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:36:41 09 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (167/565) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:36:41 09 Feb 2017 UTC: INFO: QC.py(180): Changed (2/565) 3 4 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:36:41 09 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (167/565) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 07:36:41 09 Feb 2017 UTC: INFO: QC.py(180): Changed (2/565) 3 4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:36:41 09 Feb 2017 UTC: INFO: QC.py(180): Changed (12/565) 1:6 222:226 565 to QC_BAD because changed salinity implies changed optode oxygen 07:36:41 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:36:41 09 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:36:41 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 07:36:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 141: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.12% reduction 07:36:42 09 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.141 07:36:42 09 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:36:42 09 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:36:42 09 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:36:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 07:36:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:37:41 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 07:37:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:37:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:37:53 09 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:37:53 09 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:37:53 09 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:37:53 09 Feb 2017 UTC /home/sg626/p6260141.log /home/sg626/p6260141.eng /home/sg626/p6260141.asc /home/sg626/p6260141.pro /home/sg626/p6260141.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:37:53 09 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:37:53 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:37:53 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:37:53 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:37:53 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:37:53 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:37:53 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:37:53 09 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:37:53 09 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:37:53 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:37:53 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:37:53 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:37:53 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:37:53 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:37:53 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:37:53 09 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:37:53 09 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:37:53 09 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:37:53 09 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:37:53 09 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:37:53 09 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:37:53 09 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:37:53 09 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:37:53 09 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 07:37:53 09 Feb 2017 UTC 10:43:30 09 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 10927 10:43:30 09 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:46:37 09 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 11046 10:46:37 09 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:46:37 09 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:46:37 09 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:46:37 09 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:46:37 09 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170209004636 ] 10:46:37 09 Feb 2017 UTC: INFO: Base.py(1333): PID:11054 10:46:37 09 Feb 2017 UTC: INFO: Base.py(1375): Started processing 10:46:37 09 Feb 2017 UTC 10:46:37 09 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:46:38 09 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:46:38 09 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:46:38 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:46:38 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:142 calls_made:1 call_cycle:0 10:46:38 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:46:38 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:142 calls_made:1 call_cycle:0 10:46:38 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:46:38 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:142 calls_made:1 call_cycle:0 10:46:38 09 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:142 calls_made:1 call_cycle:0 2256.0970 -15801.3610 02/09/17 10:41:36 UTC) to sdrifter@soest.hawaii.edu 10:46:38 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:142 calls_made:1 call_cycle:0 10:46:38 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:46:38 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:142 calls_made:1 call_cycle:0 10:46:38 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:46:38 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:142 calls_made:1 call_cycle:0 10:46:38 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:46:38 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:142 calls_made:1 call_cycle:0 10:46:38 09 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:46:38 09 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:46:40 09 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:46:41 09 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:46:41 09 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:46:41 09 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:46:41 09 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:46:41 09 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:46:41 09 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0142lz 10:46:41 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0142lz.x00 10:46:41 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0142lz.x01 10:46:41 09 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0142lz.r in process_file_group 10:46:41 09 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260142.log 10:46:41 09 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:46:41 09 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0142dz 10:46:41 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0142dz.x00 10:46:41 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0142dz.x01 10:46:41 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0142dz.x02 10:46:41 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0142dz.x03 10:46:41 09 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0142dz.r in process_file_group 10:46:42 09 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [142] 10:46:42 09 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [142] 10:46:42 09 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260142) for profiles 10:46:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 10:46:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/547) 546 547 to QC_BAD because CT out of water 10:46:42 09 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.140m) 10:46:42 09 Feb 2017 UTC: INFO: QC.py(365): Changed (1/547) 3 to QC_PROBABLY_BAD because raw temperature spikes 10:46:42 09 Feb 2017 UTC: INFO: QC.py(377): Changed (1/547) 546 to QC_BAD because raw salinity below bound 10:46:42 09 Feb 2017 UTC: INFO: QC.py(180): Changed (1/547) 3 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 10:46:42 09 Feb 2017 UTC: INFO: QC.py(180): Changed (1/547) 547 to QC_BAD because changed raw cond implies changed raw salinity 10:46:42 09 Feb 2017 UTC: INFO: QC.py(365): Changed (1/547) 3 to QC_INTERPOLATED because temperature spikes 10:46:42 09 Feb 2017 UTC: INFO: QC.py(377): Changed (1/547) 546 to QC_BAD because salinity below bound 10:46:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/547) 228:232 to QC_BAD because slow apogee CT flow 10:46:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/547) 1:6 to QC_BAD because prior to dive start 10:46:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/547) 545 to QC_BAD because end of climb 10:46:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/547) 1:6 228:232 545:547 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:46:42 09 Feb 2017 UTC: INFO: QC.py(180): Changed (14/547) 1:6 228:232 545:547 to QC_BAD because changed corrected salin implies changed speed 10:46:42 09 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 10:46:42 09 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 142 interp_salinity data_points in_between 304 333 % suspect thermal-inertia points 331 10:46:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.09 cm/s 10:46:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.24 cm/s 10:46:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:46:42 09 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (168/547) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:46:42 09 Feb 2017 UTC: INFO: QC.py(180): Changed (1/547) 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 10:46:42 09 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (168/547) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 10:46:42 09 Feb 2017 UTC: INFO: QC.py(180): Changed (1/547) 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 10:46:42 09 Feb 2017 UTC: INFO: QC.py(180): Changed (14/547) 1:6 228:232 545:547 to QC_BAD because changed salinity implies changed optode oxygen 10:46:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:46:42 09 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:46:42 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 10:46:43 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 142: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.56% reduction 10:46:43 09 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.142 10:46:43 09 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:46:43 09 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:46:43 09 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:46:43 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 10:46:43 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 10:47:43 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 10:47:44 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 10:47:44 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 10:47:54 09 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:47:54 09 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:47:54 09 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 10:47:54 09 Feb 2017 UTC /home/sg626/p6260142.log /home/sg626/p6260142.eng /home/sg626/p6260142.asc /home/sg626/p6260142.pro /home/sg626/p6260142.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 10:47:54 09 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:47:54 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:47:54 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:47:54 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:47:54 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:47:54 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:47:54 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:47:54 09 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:47:54 09 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:47:54 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:47:54 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:47:54 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:47:54 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:47:54 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:47:54 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:47:54 09 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:47:54 09 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:47:54 09 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:47:54 09 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:47:54 09 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:47:54 09 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:47:54 09 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:47:54 09 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:47:54 09 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 10:47:54 09 Feb 2017 UTC 14:00:14 09 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 16875 14:00:14 09 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:01:43 09 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 17147 14:01:43 09 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:01:43 09 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 14:01:43 09 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 14:01:43 09 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:01:43 09 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170209040142 ] 14:01:43 09 Feb 2017 UTC: INFO: Base.py(1333): PID:17154 14:01:43 09 Feb 2017 UTC: INFO: Base.py(1375): Started processing 14:01:43 09 Feb 2017 UTC 14:01:43 09 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 14:01:44 09 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 14:01:44 09 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:01:44 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:01:44 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:143 calls_made:1 call_cycle:0 14:01:44 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:01:44 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:143 calls_made:1 call_cycle:0 14:01:44 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:01:44 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:143 calls_made:1 call_cycle:0 14:01:44 09 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:143 calls_made:1 call_cycle:0 2257.6180 -15800.4280 02/09/17 13:58:00 UTC) to sdrifter@soest.hawaii.edu 14:01:44 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:143 calls_made:1 call_cycle:0 14:01:44 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:01:44 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:143 calls_made:1 call_cycle:0 14:01:44 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:01:44 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:143 calls_made:1 call_cycle:0 14:01:44 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:01:44 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:143 calls_made:1 call_cycle:0 14:01:44 09 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:01:44 09 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:01:46 09 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:01:47 09 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:01:47 09 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 14:01:47 09 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:01:47 09 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:01:47 09 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 14:01:47 09 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0143lz 14:01:47 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0143lz.x00 14:01:47 09 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0143lz.r in process_file_group 14:01:47 09 Feb 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0143lz.r - expected 0x2988630226, generated 0x8717dfc8 14:01:47 09 Feb 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0143lz.r - expected 0x26eb45c0, generated 0x309f 14:01:47 09 Feb 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0143lz.r - skipping 14:01:47 09 Feb 2017 UTC: ERROR: Base.py(243): Could not process sg0143lz - skipping 14:01:47 09 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 14:01:47 09 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0143lz 14:01:47 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0143lz.x00 14:01:47 09 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0143lz.r in process_file_group 14:01:47 09 Feb 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0143lz.r - expected 0x2988630226, generated 0x8717dfc8 14:01:47 09 Feb 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0143lz.r - expected 0x26eb45c0, generated 0x309f 14:01:47 09 Feb 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0143lz.r - skipping 14:01:47 09 Feb 2017 UTC: ERROR: Base.py(272): Could not process sg0143lz - skipping 14:01:47 09 Feb 2017 UTC: WARNING: Base.py(1624): No dives to process 14:01:47 09 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [] 14:01:47 09 Feb 2017 UTC: INFO: Base.py(1780): No dives found to profile 14:01:47 09 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.143 14:01:47 09 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:01:47 09 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:01:47 09 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:01:47 09 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:01:47 09 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:01:47 09 Feb 2017 UTC: ERROR: Base.py(1960): Dive [143] failed to process completely. The following files were not processed completely: /home/sg626/sg0143lz.r Glider logout not seen - retransmissions from glider possible Consult baselog_170209040142 for details. 14:01:47 09 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:01:47 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:01:47 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:01:47 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:01:47 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:01:47 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:01:47 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:01:47 09 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:01:47 09 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:01:47 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:01:47 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:01:47 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:01:47 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:01:47 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:01:47 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:01:47 09 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:01:47 09 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:01:47 09 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:01:47 09 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:01:47 09 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:01:47 09 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:01:47 09 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:01:47 09 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:01:47 09 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 14:01:47 09 Feb 2017 UTC 14:07:23 09 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 17440 14:07:23 09 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:09:38 09 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 17558 14:09:38 09 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:09:38 09 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 14:09:38 09 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 14:09:38 09 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:09:38 09 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170209040937 ] 14:09:38 09 Feb 2017 UTC: INFO: Base.py(1333): PID:17566 14:09:38 09 Feb 2017 UTC: INFO: Base.py(1375): Started processing 14:09:38 09 Feb 2017 UTC 14:09:38 09 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 14:09:38 09 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 14:09:38 09 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:09:38 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:09:38 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:143 calls_made:4 call_cycle:0 14:09:38 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:09:38 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:143 calls_made:4 call_cycle:0 14:09:38 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:09:38 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:143 calls_made:4 call_cycle:0 14:09:38 09 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:143 calls_made:4 call_cycle:0 2257.6180 -15800.4280 02/09/17 13:58:00 UTC) to sdrifter@soest.hawaii.edu 14:09:38 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:143 calls_made:4 call_cycle:0 14:09:38 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:09:38 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:143 calls_made:4 call_cycle:0 14:09:38 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:09:38 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:143 calls_made:4 call_cycle:0 14:09:38 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:09:38 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:143 calls_made:4 call_cycle:0 14:09:38 09 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:09:38 09 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:09:41 09 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:09:41 09 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:09:41 09 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 14:09:41 09 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:09:41 09 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:09:41 09 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 14:09:42 09 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0143lz 14:09:42 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0143lz.x00 14:09:42 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0143lz.x01 14:09:42 09 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0143lz.r in process_file_group 14:09:42 09 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260143.log 14:09:42 09 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 14:09:42 09 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0143dz 14:09:42 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0143dz.x00 14:09:42 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0143dz.x01 14:09:42 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0143dz.x02 14:09:42 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0143dz.x03 14:09:42 09 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0143dz.r in process_file_group 14:09:42 09 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [143] 14:09:42 09 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [143] 14:09:42 09 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260143) for profiles 14:09:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 14:09:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/574) 572:574 to QC_BAD because CT out of water 14:09:42 09 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.119m) 14:09:42 09 Feb 2017 UTC: INFO: QC.py(365): Changed (1/574) 573 to QC_PROBABLY_BAD because raw temperature spikes 14:09:42 09 Feb 2017 UTC: INFO: QC.py(377): Changed (1/574) 574 to QC_BAD because raw salinity below bound 14:09:42 09 Feb 2017 UTC: INFO: QC.py(180): Changed (1/574) 573 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:09:42 09 Feb 2017 UTC: INFO: QC.py(180): Changed (2/574) 572 573 to QC_BAD because changed raw cond implies changed raw salinity 14:09:42 09 Feb 2017 UTC: INFO: QC.py(365): Changed (1/574) 573 to QC_INTERPOLATED because temperature spikes 14:09:42 09 Feb 2017 UTC: INFO: QC.py(377): Changed (1/574) 574 to QC_BAD because salinity below bound 14:09:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/574) 226:230 to QC_BAD because slow apogee CT flow 14:09:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/574) 1:6 to QC_BAD because prior to dive start 14:09:42 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/574) 1:6 226:230 572:574 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:09:42 09 Feb 2017 UTC: INFO: QC.py(180): Changed (14/574) 1:6 226:230 572:574 to QC_BAD because changed corrected salin implies changed speed 14:09:43 09 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:09:43 09 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 143 interp_salinity data_points in_between 283 336 % suspect thermal-inertia points 335 14:09:43 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.20 cm/s 14:09:43 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.14 cm/s 14:09:43 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:09:43 09 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (172/574) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:09:43 09 Feb 2017 UTC: INFO: QC.py(180): Changed (1/574) 573 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 14:09:43 09 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (172/574) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 14:09:43 09 Feb 2017 UTC: INFO: QC.py(180): Changed (1/574) 573 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 14:09:43 09 Feb 2017 UTC: INFO: QC.py(180): Changed (14/574) 1:6 226:230 572:574 to QC_BAD because changed salinity implies changed optode oxygen 14:09:43 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:09:43 09 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:09:43 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 14:09:43 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 143: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.44% reduction 14:09:43 09 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.143 14:09:43 09 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:09:43 09 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:09:43 09 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:09:44 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 14:09:44 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 14:10:44 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 14:10:44 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 14:10:44 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 14:10:56 09 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:10:56 09 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:10:56 09 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:10:56 09 Feb 2017 UTC /home/sg626/p6260143.log /home/sg626/p6260143.eng /home/sg626/p6260143.asc /home/sg626/p6260143.pro /home/sg626/p6260143.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 14:10:56 09 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:10:56 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:10:56 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:10:56 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:10:56 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:10:56 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:10:56 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:10:56 09 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:10:56 09 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:10:56 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:10:56 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:10:56 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:10:56 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:10:56 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:10:56 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:10:56 09 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:10:56 09 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:10:56 09 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:10:56 09 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:10:56 09 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:10:56 09 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:10:56 09 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:10:56 09 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:10:56 09 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 14:10:56 09 Feb 2017 UTC 17:13:10 09 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 22754 17:13:11 09 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:15:58 09 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 22877 17:15:58 09 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:15:58 09 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:15:58 09 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:15:58 09 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:15:58 09 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170209071557 ] 17:15:58 09 Feb 2017 UTC: INFO: Base.py(1333): PID:22884 17:15:58 09 Feb 2017 UTC: INFO: Base.py(1375): Started processing 17:15:58 09 Feb 2017 UTC 17:15:58 09 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:15:58 09 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:15:58 09 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:15:58 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:15:58 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:144 calls_made:1 call_cycle:0 17:15:58 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:15:58 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:144 calls_made:1 call_cycle:0 17:15:58 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:15:58 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:144 calls_made:1 call_cycle:0 17:15:58 09 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:144 calls_made:1 call_cycle:0 2259.4180 -15759.5340 02/09/17 17:11:13 UTC) to sdrifter@soest.hawaii.edu 17:15:59 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:144 calls_made:1 call_cycle:0 17:15:59 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:15:59 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:144 calls_made:1 call_cycle:0 17:15:59 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:15:59 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:144 calls_made:1 call_cycle:0 17:15:59 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:15:59 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:144 calls_made:1 call_cycle:0 17:15:59 09 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:15:59 09 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:16:01 09 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:16:02 09 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:16:02 09 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:16:02 09 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:16:02 09 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:16:02 09 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:16:02 09 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0144lz 17:16:02 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0144lz.x00 17:16:02 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0144lz.x01 17:16:02 09 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0144lz.r in process_file_group 17:16:02 09 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260144.log 17:16:02 09 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:16:02 09 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0144dz 17:16:02 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0144dz.x00 17:16:02 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0144dz.x01 17:16:02 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0144dz.x02 17:16:02 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0144dz.x03 17:16:02 09 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0144dz.r in process_file_group 17:16:02 09 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [144] 17:16:02 09 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [144] 17:16:03 09 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260144) for profiles 17:16:03 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:16:03 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/539) 538 539 to QC_BAD because CT out of water 17:16:03 09 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.061m) 17:16:03 09 Feb 2017 UTC: INFO: QC.py(365): Changed (2/539) 2 3 to QC_PROBABLY_BAD because raw temperature spikes 17:16:03 09 Feb 2017 UTC: INFO: QC.py(377): Changed (1/539) 539 to QC_BAD because raw salinity below bound 17:16:03 09 Feb 2017 UTC: INFO: QC.py(180): Changed (2/539) 2 3 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:16:03 09 Feb 2017 UTC: INFO: QC.py(180): Changed (1/539) 538 to QC_BAD because changed raw cond implies changed raw salinity 17:16:03 09 Feb 2017 UTC: INFO: QC.py(365): Changed (2/539) 2 3 to QC_INTERPOLATED because temperature spikes 17:16:03 09 Feb 2017 UTC: INFO: QC.py(377): Changed (1/539) 539 to QC_BAD because salinity below bound 17:16:03 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/539) 214:218 to QC_BAD because slow apogee CT flow 17:16:03 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/539) 1:6 to QC_BAD because prior to dive start 17:16:03 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/539) 1:6 214:218 538 539 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:16:03 09 Feb 2017 UTC: INFO: QC.py(180): Changed (13/539) 1:6 214:218 538 539 to QC_BAD because changed corrected salin implies changed speed 17:16:03 09 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:16:03 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.31 cm/s 17:16:03 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.09 cm/s 17:16:03 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:16:03 09 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (165/539) 112:115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:16:03 09 Feb 2017 UTC: INFO: QC.py(180): Changed (2/539) 2 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:16:03 09 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (165/539) 112:115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:16:03 09 Feb 2017 UTC: INFO: QC.py(180): Changed (2/539) 2 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:16:03 09 Feb 2017 UTC: INFO: QC.py(180): Changed (13/539) 1:6 214:218 538 539 to QC_BAD because changed salinity implies changed optode oxygen 17:16:03 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:16:03 09 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:16:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:16:04 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 144: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.41% reduction 17:16:04 09 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.144 17:16:04 09 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:16:04 09 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:16:04 09 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:16:04 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:16:04 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:17:05 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 17:17:06 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:17:06 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:17:17 09 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:17:17 09 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:17:17 09 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:17:17 09 Feb 2017 UTC /home/sg626/p6260144.log /home/sg626/p6260144.eng /home/sg626/p6260144.asc /home/sg626/p6260144.pro /home/sg626/p6260144.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:17:17 09 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:17:17 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:17:17 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:17:17 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:17:17 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:17:17 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:17:17 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:17:17 09 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:17:17 09 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:17:17 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:17:17 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:17:17 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:17:17 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:17:17 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:17:17 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:17:17 09 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:17:17 09 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:17:17 09 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:17:17 09 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:17:17 09 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:17:17 09 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:17:17 09 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:17:17 09 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:17:17 09 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 17:17:17 09 Feb 2017 UTC 20:24:58 09 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 28226 20:24:58 09 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:27:44 09 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 28368 20:27:44 09 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:27:44 09 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:27:44 09 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:27:44 09 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:27:44 09 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170209102743 ] 20:27:44 09 Feb 2017 UTC: INFO: Base.py(1333): PID:28386 20:27:44 09 Feb 2017 UTC: INFO: Base.py(1375): Started processing 20:27:44 09 Feb 2017 UTC 20:27:44 09 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:27:45 09 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:27:45 09 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:27:45 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:27:45 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:145 calls_made:1 call_cycle:0 20:27:45 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:27:45 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:145 calls_made:1 call_cycle:0 20:27:45 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:27:45 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:145 calls_made:1 call_cycle:0 20:27:45 09 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:145 calls_made:1 call_cycle:0 2300.8020 -15758.6540 02/09/17 20:23:00 UTC) to sdrifter@soest.hawaii.edu 20:27:45 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:145 calls_made:1 call_cycle:0 20:27:45 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:27:45 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:145 calls_made:1 call_cycle:0 20:27:45 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:27:45 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:145 calls_made:1 call_cycle:0 20:27:45 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:27:45 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:145 calls_made:1 call_cycle:0 20:27:45 09 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:27:45 09 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:27:47 09 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:27:48 09 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:27:48 09 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:27:48 09 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:27:48 09 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:27:48 09 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:27:48 09 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0145lz 20:27:48 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0145lz.x00 20:27:48 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0145lz.x01 20:27:48 09 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0145lz.r in process_file_group 20:27:48 09 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260145.log 20:27:48 09 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:27:48 09 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0145dz 20:27:48 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0145dz.x00 20:27:48 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0145dz.x01 20:27:48 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0145dz.x02 20:27:48 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0145dz.x03 20:27:48 09 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0145dz.r in process_file_group 20:27:49 09 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [145] 20:27:49 09 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [145] 20:27:49 09 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260145) for profiles 20:27:49 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 20:27:49 09 Feb 2017 UTC: INFO: QC.py(365): Changed (2/570) 4 569 to QC_PROBABLY_BAD because raw temperature spikes 20:27:49 09 Feb 2017 UTC: INFO: QC.py(377): Changed (1/570) 570 to QC_BAD because raw salinity below bound 20:27:49 09 Feb 2017 UTC: INFO: QC.py(388): Changed (1/570) 570 to QC_BAD because bad raw salinity indicates raw conductivity issues 20:27:49 09 Feb 2017 UTC: INFO: QC.py(180): Changed (2/570) 4 569 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 20:27:49 09 Feb 2017 UTC: INFO: QC.py(365): Changed (2/570) 4 569 to QC_INTERPOLATED because temperature spikes 20:27:49 09 Feb 2017 UTC: INFO: QC.py(377): Changed (1/570) 570 to QC_BAD because salinity below bound 20:27:49 09 Feb 2017 UTC: INFO: QC.py(388): Changed (1/570) 570 to QC_BAD because bad salinity indicates conductivity issues 20:27:49 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/570) 216:220 to QC_BAD because slow apogee CT flow 20:27:49 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/570) 1:6 to QC_BAD because prior to dive start 20:27:49 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/570) 569 to QC_BAD because end of climb 20:27:49 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/570) 1:6 216:220 569 570 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 20:27:49 09 Feb 2017 UTC: INFO: QC.py(180): Changed (13/570) 1:6 216:220 569 570 to QC_BAD because changed corrected salin implies changed speed 20:27:49 09 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 20:27:49 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.72 cm/s 20:27:49 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.04 cm/s 20:27:49 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 20:27:49 09 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (165/570) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 20:27:49 09 Feb 2017 UTC: INFO: QC.py(180): Changed (2/570) 4 569 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 20:27:49 09 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (165/570) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 20:27:49 09 Feb 2017 UTC: INFO: QC.py(180): Changed (2/570) 4 569 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 20:27:49 09 Feb 2017 UTC: INFO: QC.py(180): Changed (13/570) 1:6 216:220 569 570 to QC_BAD because changed salinity implies changed optode oxygen 20:27:49 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 20:27:49 09 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 20:27:49 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 20:27:50 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 145: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.28% reduction 20:27:50 09 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.145 20:27:50 09 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:27:50 09 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:27:50 09 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:27:50 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 20:27:50 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 20:28:51 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 20:28:51 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 20:28:51 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 20:29:02 09 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:29:02 09 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:29:02 09 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:29:02 09 Feb 2017 UTC /home/sg626/p6260145.log /home/sg626/p6260145.eng /home/sg626/p6260145.asc /home/sg626/p6260145.pro /home/sg626/p6260145.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 20:29:02 09 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:29:02 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:29:02 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:29:02 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:29:02 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:29:02 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:29:02 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:29:02 09 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:29:02 09 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:29:02 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:29:02 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:29:02 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:29:02 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:29:02 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:29:02 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:29:02 09 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:29:02 09 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:29:02 09 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:29:02 09 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:29:02 09 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:29:02 09 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:29:02 09 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:29:02 09 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:29:02 09 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 20:29:02 09 Feb 2017 UTC 23:37:26 09 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 1892 23:37:26 09 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 23:39:58 09 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 1998 23:39:58 09 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:39:58 09 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:39:58 09 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:39:58 09 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:39:58 09 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170209133957 ] 23:39:58 09 Feb 2017 UTC: INFO: Base.py(1333): PID:2006 23:39:58 09 Feb 2017 UTC: INFO: Base.py(1375): Started processing 23:39:58 09 Feb 2017 UTC 23:39:58 09 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:39:58 09 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:39:58 09 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:39:58 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:39:58 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:146 calls_made:1 call_cycle:0 23:39:58 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:39:58 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:146 calls_made:1 call_cycle:0 23:39:58 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:39:58 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:146 calls_made:1 call_cycle:0 23:39:58 09 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:146 calls_made:1 call_cycle:0 2300.9170 -15758.0530 02/09/17 23:35:29 UTC) to sdrifter@soest.hawaii.edu 23:39:59 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:146 calls_made:1 call_cycle:0 23:39:59 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:39:59 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:146 calls_made:1 call_cycle:0 23:39:59 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:39:59 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:146 calls_made:1 call_cycle:0 23:39:59 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:39:59 09 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:146 calls_made:1 call_cycle:0 23:39:59 09 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:39:59 09 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:40:01 09 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:40:02 09 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:40:02 09 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:40:02 09 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:40:02 09 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:40:02 09 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:40:02 09 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0146lz 23:40:02 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0146lz.x00 23:40:02 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0146lz.x01 23:40:02 09 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0146lz.r in process_file_group 23:40:02 09 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260146.log 23:40:02 09 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:40:02 09 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0146dz 23:40:02 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0146dz.x00 23:40:02 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0146dz.x01 23:40:02 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0146dz.x02 23:40:02 09 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0146dz.x03 23:40:02 09 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0146dz.r in process_file_group 23:40:03 09 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [146] 23:40:03 09 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [146] 23:40:03 09 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260146) for profiles 23:40:03 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 23:40:03 09 Feb 2017 UTC: INFO: QC.py(365): Changed (2/567) 2 3 to QC_PROBABLY_BAD because raw temperature spikes 23:40:03 09 Feb 2017 UTC: INFO: QC.py(408): Changed (1/567) 3 to QC_PROBABLY_BAD because raw conductivity spikes 23:40:03 09 Feb 2017 UTC: INFO: QC.py(180): Changed (2/567) 2 3 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 23:40:03 09 Feb 2017 UTC: INFO: QC.py(365): Changed (2/567) 2 3 to QC_INTERPOLATED because temperature spikes 23:40:03 09 Feb 2017 UTC: INFO: QC.py(408): Changed (1/567) 3 to QC_INTERPOLATED because conductivity spikes 23:40:03 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/567) 221:225 to QC_BAD because slow apogee CT flow 23:40:03 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/567) 1:6 to QC_BAD because prior to dive start 23:40:03 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/567) 1:6 221:225 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 23:40:03 09 Feb 2017 UTC: INFO: QC.py(180): Changed (11/567) 1:6 221:225 to QC_BAD because changed corrected salin implies changed speed 23:40:03 09 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 23:40:03 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.12 cm/s 23:40:03 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.95 cm/s 23:40:03 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 23:40:03 09 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (168/567) 119 120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 23:40:03 09 Feb 2017 UTC: INFO: QC.py(180): Changed (2/567) 2 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 23:40:03 09 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (168/567) 119 120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 23:40:03 09 Feb 2017 UTC: INFO: QC.py(180): Changed (2/567) 2 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 23:40:03 09 Feb 2017 UTC: INFO: QC.py(180): Changed (11/567) 1:6 221:225 to QC_BAD because changed salinity implies changed optode oxygen 23:40:03 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 23:40:03 09 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 23:40:03 09 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 23:40:04 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 146: Data set size for profile, binned and kkyy files reduced by 11 points, a 1.94% reduction 23:40:04 09 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.146 23:40:04 09 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:40:04 09 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:40:04 09 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:40:04 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 23:40:04 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 23:41:05 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 23:41:06 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 23:41:06 09 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 23:41:17 09 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:41:17 09 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:41:17 09 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:41:17 09 Feb 2017 UTC /home/sg626/p6260146.log /home/sg626/p6260146.eng /home/sg626/p6260146.asc /home/sg626/p6260146.pro /home/sg626/p6260146.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 23:41:17 09 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:41:17 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:41:17 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:41:17 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:41:17 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:41:17 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:41:17 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:41:17 09 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:41:17 09 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:41:17 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:41:17 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:41:17 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:41:17 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:41:17 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:41:17 09 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:41:17 09 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:41:17 09 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:41:17 09 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:41:17 09 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:41:17 09 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:41:17 09 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:41:17 09 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:41:17 09 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:41:17 09 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 23:41:17 09 Feb 2017 UTC 02:42:41 10 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 8100 02:42:41 10 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:45:35 10 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 8159 02:45:35 10 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:45:35 10 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:45:35 10 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:45:35 10 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:45:35 10 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170209164524 ] 02:45:35 10 Feb 2017 UTC: INFO: Base.py(1333): PID:8166 02:45:35 10 Feb 2017 UTC: INFO: Base.py(1375): Started processing 02:45:35 10 Feb 2017 UTC 02:45:35 10 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:45:36 10 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:45:36 10 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:45:36 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:45:36 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:147 calls_made:1 call_cycle:0 02:45:36 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:45:36 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:147 calls_made:1 call_cycle:0 02:45:36 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:45:36 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:147 calls_made:1 call_cycle:0 02:45:36 10 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:147 calls_made:1 call_cycle:0 2301.3460 -15757.3000 02/10/17 02:40:25 UTC) to sdrifter@soest.hawaii.edu 02:45:37 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:147 calls_made:1 call_cycle:0 02:45:37 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:45:37 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:147 calls_made:1 call_cycle:0 02:45:37 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:45:37 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:147 calls_made:1 call_cycle:0 02:45:37 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:45:37 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:147 calls_made:1 call_cycle:0 02:45:37 10 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:45:37 10 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:45:40 10 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:45:41 10 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:45:41 10 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:45:41 10 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:45:41 10 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:45:41 10 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:45:42 10 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0147lz 02:45:42 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0147lz.x00 02:45:42 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0147lz.x01 02:45:42 10 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0147lz.r in process_file_group 02:45:42 10 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260147.log 02:45:42 10 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 02:45:42 10 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0147dz 02:45:42 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0147dz.x00 02:45:42 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0147dz.x01 02:45:42 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0147dz.x02 02:45:42 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0147dz.x03 02:45:42 10 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0147dz.r in process_file_group 02:45:42 10 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [147] 02:45:42 10 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [147] 02:45:43 10 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260147) for profiles 02:45:43 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 02:45:43 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/504) 503 to QC_BAD because CT out of water 02:45:43 10 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.023m) 02:45:43 10 Feb 2017 UTC: INFO: QC.py(408): Changed (1/504) 3 to QC_PROBABLY_BAD because raw conductivity spikes 02:45:43 10 Feb 2017 UTC: INFO: QC.py(180): Changed (1/504) 3 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 02:45:43 10 Feb 2017 UTC: INFO: QC.py(180): Changed (1/504) 503 to QC_BAD because changed raw cond implies changed raw salinity 02:45:43 10 Feb 2017 UTC: INFO: QC.py(408): Changed (1/504) 3 to QC_INTERPOLATED because conductivity spikes 02:45:43 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/504) 231:235 to QC_BAD because slow apogee CT flow 02:45:43 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/504) 1:6 to QC_BAD because prior to dive start 02:45:43 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/504) 504 to QC_BAD because end of climb 02:45:43 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/504) 1:6 231:235 503 504 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:45:43 10 Feb 2017 UTC: INFO: QC.py(180): Changed (13/504) 1:6 231:235 503 504 to QC_BAD because changed corrected salin implies changed speed 02:45:44 10 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:45:44 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.61 cm/s 02:45:44 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.87 cm/s 02:45:44 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:45:44 10 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (170/504) 124 125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:45:44 10 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (170/504) 124 125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 02:45:44 10 Feb 2017 UTC: INFO: QC.py(180): Changed (13/504) 1:6 231:235 503 504 to QC_BAD because changed salinity implies changed optode oxygen 02:45:44 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:45:44 10 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:45:44 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 02:45:53 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 147: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.58% reduction 02:45:53 10 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.147 02:45:53 10 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:45:53 10 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:45:53 10 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:45:54 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 02:45:54 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 02:47:02 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 02:47:03 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 02:47:03 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 02:47:16 10 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:47:16 10 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:47:16 10 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:47:16 10 Feb 2017 UTC /home/sg626/p6260147.log /home/sg626/p6260147.eng /home/sg626/p6260147.asc /home/sg626/p6260147.pro /home/sg626/p6260147.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 02:47:16 10 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:47:16 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:47:16 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:47:16 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:47:16 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:47:16 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:47:16 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:47:16 10 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:47:16 10 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:47:16 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:47:16 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:47:16 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:47:16 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:47:16 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:47:16 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:47:16 10 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:47:16 10 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:47:16 10 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:47:16 10 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:47:16 10 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:47:16 10 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:47:16 10 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:47:16 10 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:47:16 10 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 02:47:16 10 Feb 2017 UTC 05:49:14 10 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 13342 05:49:14 10 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:51:58 10 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 13531 05:51:58 10 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:51:58 10 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:51:58 10 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:51:58 10 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:51:58 10 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170209195157 ] 05:51:58 10 Feb 2017 UTC: INFO: Base.py(1333): PID:13538 05:51:59 10 Feb 2017 UTC: INFO: Base.py(1375): Started processing 05:51:59 10 Feb 2017 UTC 05:51:59 10 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:51:59 10 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:51:59 10 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:51:59 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:51:59 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:148 calls_made:1 call_cycle:0 05:51:59 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:51:59 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:148 calls_made:1 call_cycle:0 05:51:59 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:51:59 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:148 calls_made:1 call_cycle:0 05:51:59 10 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:148 calls_made:1 call_cycle:0 2302.2200 -15756.0950 02/10/17 05:47:07 UTC) to sdrifter@soest.hawaii.edu 05:51:59 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:148 calls_made:1 call_cycle:0 05:51:59 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:51:59 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:148 calls_made:1 call_cycle:0 05:51:59 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:51:59 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:148 calls_made:1 call_cycle:0 05:51:59 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:51:59 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:148 calls_made:1 call_cycle:0 05:51:59 10 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:51:59 10 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:52:02 10 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:52:02 10 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:52:02 10 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:52:02 10 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:52:02 10 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:52:02 10 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:52:03 10 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0148lz 05:52:03 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0148lz.x00 05:52:03 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0148lz.x01 05:52:03 10 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0148lz.r in process_file_group 05:52:03 10 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260148.log 05:52:03 10 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:52:03 10 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0148dz 05:52:03 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0148dz.x00 05:52:03 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0148dz.x01 05:52:03 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0148dz.x02 05:52:03 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0148dz.x03 05:52:03 10 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0148dz.r in process_file_group 05:52:03 10 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [148] 05:52:03 10 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [148] 05:52:03 10 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260148) for profiles 05:52:03 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:52:03 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/524) 524 to QC_BAD because CT out of water 05:52:03 10 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.033m) 05:52:03 10 Feb 2017 UTC: INFO: QC.py(365): Changed (2/524) 2 200 to QC_PROBABLY_BAD because raw temperature spikes 05:52:03 10 Feb 2017 UTC: INFO: QC.py(377): Changed (1/524) 524 to QC_BAD because raw salinity below bound 05:52:03 10 Feb 2017 UTC: INFO: QC.py(408): Changed (1/524) 200 to QC_PROBABLY_BAD because raw conductivity spikes 05:52:03 10 Feb 2017 UTC: INFO: QC.py(180): Changed (2/524) 2 200 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:52:03 10 Feb 2017 UTC: INFO: QC.py(365): Changed (2/524) 2 200 to QC_INTERPOLATED because temperature spikes 05:52:03 10 Feb 2017 UTC: INFO: QC.py(377): Changed (1/524) 524 to QC_BAD because salinity below bound 05:52:03 10 Feb 2017 UTC: INFO: QC.py(408): Changed (1/524) 200 to QC_INTERPOLATED because conductivity spikes 05:52:03 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/524) 227:231 to QC_BAD because slow apogee CT flow 05:52:03 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/524) 1:6 to QC_BAD because prior to dive start 05:52:03 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/524) 1:6 227:231 524 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:52:03 10 Feb 2017 UTC: INFO: QC.py(180): Changed (12/524) 1:6 227:231 524 to QC_BAD because changed corrected salin implies changed speed 05:52:04 10 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:52:04 10 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 148 interp_salinity data_points in_between 270 332 % suspect thermal-inertia points 322 323 05:52:04 10 Feb 2017 UTC: INFO: QC.py(180): Changed (1/524) 200 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 05:52:04 10 Feb 2017 UTC: INFO: QC.py(180): Changed (1/524) 200 to QC_INTERPOLATED because changed corrected temp implies changed speed 05:52:04 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.86 cm/s 05:52:04 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.77 cm/s 05:52:04 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:52:04 10 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (169/524) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:52:04 10 Feb 2017 UTC: INFO: QC.py(180): Changed (1/524) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:52:04 10 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (169/524) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:52:04 10 Feb 2017 UTC: INFO: QC.py(180): Changed (1/524) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:52:04 10 Feb 2017 UTC: INFO: QC.py(180): Changed (12/524) 1:6 227:231 524 to QC_BAD because changed salinity implies changed optode oxygen 05:52:04 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:52:04 10 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:52:04 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 05:52:06 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 148: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.29% reduction 05:52:06 10 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.148 05:52:06 10 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:52:06 10 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:52:06 10 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:52:06 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 05:52:06 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 05:53:08 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 05:53:09 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 05:53:09 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 05:53:20 10 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:53:20 10 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:53:20 10 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:53:20 10 Feb 2017 UTC /home/sg626/p6260148.log /home/sg626/p6260148.eng /home/sg626/p6260148.asc /home/sg626/p6260148.pro /home/sg626/p6260148.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 05:53:20 10 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:53:20 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:53:20 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:53:20 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:53:20 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:53:20 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:53:20 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:53:20 10 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:53:20 10 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:53:20 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:53:20 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:53:20 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:53:20 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:53:20 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:53:20 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:53:20 10 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:53:20 10 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:53:20 10 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:53:20 10 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:53:20 10 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:53:20 10 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:53:20 10 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:53:20 10 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:53:20 10 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 05:53:20 10 Feb 2017 UTC 08:56:58 10 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 20071 08:56:58 10 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:59:38 10 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 20250 08:59:38 10 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:59:38 10 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:59:38 10 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:59:38 10 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:59:38 10 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170209225937 ] 08:59:38 10 Feb 2017 UTC: INFO: Base.py(1333): PID:20257 08:59:38 10 Feb 2017 UTC: INFO: Base.py(1375): Started processing 08:59:38 10 Feb 2017 UTC 08:59:38 10 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:59:38 10 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:59:38 10 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:59:38 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:59:38 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:149 calls_made:1 call_cycle:0 08:59:38 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:59:38 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:149 calls_made:1 call_cycle:0 08:59:38 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:59:38 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:149 calls_made:1 call_cycle:0 08:59:38 10 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:149 calls_made:1 call_cycle:0 2302.6110 -15754.9500 02/10/17 08:55:00 UTC) to sdrifter@soest.hawaii.edu 08:59:38 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:149 calls_made:1 call_cycle:0 08:59:38 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:59:38 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:149 calls_made:1 call_cycle:0 08:59:38 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:59:38 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:149 calls_made:1 call_cycle:0 08:59:38 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:59:38 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:149 calls_made:1 call_cycle:0 08:59:38 10 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:59:38 10 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:59:41 10 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:59:42 10 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:59:42 10 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:59:42 10 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:59:42 10 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:59:42 10 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:59:42 10 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0149lz 08:59:42 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0149lz.x00 08:59:42 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0149lz.x01 08:59:42 10 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0149lz.r in process_file_group 08:59:42 10 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260149.log 08:59:42 10 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:59:42 10 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0149dz 08:59:42 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0149dz.x00 08:59:42 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0149dz.x01 08:59:42 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0149dz.x02 08:59:42 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0149dz.x03 08:59:42 10 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0149dz.r in process_file_group 08:59:42 10 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [149] 08:59:42 10 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [149] 08:59:42 10 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260149) for profiles 08:59:42 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:59:42 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/548) 547 548 to QC_BAD because CT out of water 08:59:42 10 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.076m) 08:59:42 10 Feb 2017 UTC: INFO: QC.py(365): Changed (2/548) 2 3 to QC_PROBABLY_BAD because raw temperature spikes 08:59:42 10 Feb 2017 UTC: INFO: QC.py(180): Changed (2/548) 2 3 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:59:42 10 Feb 2017 UTC: INFO: QC.py(180): Changed (2/548) 547 548 to QC_BAD because changed raw cond implies changed raw salinity 08:59:43 10 Feb 2017 UTC: INFO: QC.py(365): Changed (2/548) 2 3 to QC_INTERPOLATED because temperature spikes 08:59:43 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/548) 215:219 to QC_BAD because slow apogee CT flow 08:59:43 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/548) 1:6 to QC_BAD because prior to dive start 08:59:43 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/548) 1:6 215:219 547 548 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:59:43 10 Feb 2017 UTC: INFO: QC.py(180): Changed (13/548) 1:6 215:219 547 548 to QC_BAD because changed corrected salin implies changed speed 08:59:43 10 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:59:43 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.18 cm/s 08:59:43 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.00 cm/s 08:59:43 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:59:43 10 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (165/548) 113:115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:59:43 10 Feb 2017 UTC: INFO: QC.py(180): Changed (2/548) 2 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:59:43 10 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (165/548) 113:115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:59:43 10 Feb 2017 UTC: INFO: QC.py(180): Changed (2/548) 2 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:59:43 10 Feb 2017 UTC: INFO: QC.py(180): Changed (13/548) 1:6 215:219 547 548 to QC_BAD because changed salinity implies changed optode oxygen 08:59:43 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:59:43 10 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:59:43 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 08:59:43 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 149: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.37% reduction 08:59:44 10 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.149 08:59:44 10 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:59:44 10 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:59:44 10 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:59:44 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 08:59:44 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 09:00:47 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 09:00:48 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 09:00:48 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 09:00:59 10 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:00:59 10 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:00:59 10 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:00:59 10 Feb 2017 UTC /home/sg626/p6260149.log /home/sg626/p6260149.eng /home/sg626/p6260149.asc /home/sg626/p6260149.pro /home/sg626/p6260149.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 09:00:59 10 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:00:59 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:00:59 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:00:59 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:00:59 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:00:59 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:00:59 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:00:59 10 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:00:59 10 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:00:59 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:00:59 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:00:59 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:00:59 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:00:59 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:00:59 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:00:59 10 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:00:59 10 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:00:59 10 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:00:59 10 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:00:59 10 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:00:59 10 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:00:59 10 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:00:59 10 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:00:59 10 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 09:00:59 10 Feb 2017 UTC 12:06:18 10 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 28133 12:06:18 10 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:08:55 10 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 28250 12:08:55 10 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:08:55 10 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:08:55 10 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:08:55 10 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:08:55 10 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170210020854 ] 12:08:55 10 Feb 2017 UTC: INFO: Base.py(1333): PID:28257 12:08:55 10 Feb 2017 UTC: INFO: Base.py(1375): Started processing 12:08:55 10 Feb 2017 UTC 12:08:55 10 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:08:56 10 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:08:56 10 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:08:56 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:08:56 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:150 calls_made:1 call_cycle:0 12:08:56 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:08:56 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:150 calls_made:1 call_cycle:0 12:08:56 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:08:56 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:150 calls_made:1 call_cycle:0 12:08:56 10 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:150 calls_made:1 call_cycle:0 2303.6700 -15754.1350 02/10/17 12:04:19 UTC) to sdrifter@soest.hawaii.edu 12:08:56 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:150 calls_made:1 call_cycle:0 12:08:56 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:08:56 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:150 calls_made:1 call_cycle:0 12:08:56 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:08:56 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:150 calls_made:1 call_cycle:0 12:08:56 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:08:56 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:150 calls_made:1 call_cycle:0 12:08:56 10 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:08:56 10 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:08:59 10 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:08:59 10 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:08:59 10 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:08:59 10 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:08:59 10 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:08:59 10 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:09:00 10 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0150lz 12:09:00 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0150lz.x00 12:09:00 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0150lz.x01 12:09:00 10 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0150lz.r in process_file_group 12:09:00 10 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260150.log 12:09:00 10 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:09:00 10 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0150dz 12:09:00 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0150dz.x00 12:09:00 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0150dz.x01 12:09:00 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0150dz.x02 12:09:00 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0150dz.x03 12:09:00 10 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0150dz.r in process_file_group 12:09:00 10 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [150] 12:09:00 10 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [150] 12:09:00 10 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260150) for profiles 12:09:00 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 12:09:00 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/561) 561 to QC_BAD because CT out of water 12:09:00 10 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.080m) 12:09:00 10 Feb 2017 UTC: INFO: QC.py(365): Changed (7/561) 2 194 217 220 221 224 241 to QC_PROBABLY_BAD because raw temperature spikes 12:09:00 10 Feb 2017 UTC: INFO: QC.py(377): Changed (1/561) 561 to QC_BAD because raw salinity below bound 12:09:00 10 Feb 2017 UTC: INFO: QC.py(408): Changed (4/561) 217 220 222 241 to QC_PROBABLY_BAD because raw conductivity spikes 12:09:00 10 Feb 2017 UTC: INFO: QC.py(180): Changed (7/561) 2 194 217 220 221 224 241 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 12:09:00 10 Feb 2017 UTC: INFO: QC.py(180): Changed (1/561) 222 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 12:09:00 10 Feb 2017 UTC: INFO: QC.py(365): Changed (7/561) 2 194 217 220 221 224 241 to QC_INTERPOLATED because temperature spikes 12:09:00 10 Feb 2017 UTC: INFO: QC.py(377): Changed (1/561) 561 to QC_BAD because salinity below bound 12:09:00 10 Feb 2017 UTC: INFO: QC.py(408): Changed (4/561) 217 220 222 241 to QC_INTERPOLATED because conductivity spikes 12:09:00 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/561) 221:225 to QC_BAD because slow apogee CT flow 12:09:00 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/561) 1:6 to QC_BAD because prior to dive start 12:09:00 10 Feb 2017 UTC: INFO: QC.py(488): Changed (1/561) 220 to QC_PROBABLY_BAD because bad interpolation anchors 12:09:00 10 Feb 2017 UTC: INFO: QC.py(489): SUGGESTION: 150 bad_conductivity data_points in_between 218 220 % bad interpolation anchors 12:09:00 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/561) 1:6 221:225 561 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:09:00 10 Feb 2017 UTC: INFO: QC.py(180): Changed (12/561) 1:6 221:225 561 to QC_BAD because changed corrected salin implies changed speed 12:09:00 10 Feb 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 560 12:09:01 10 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:09:01 10 Feb 2017 UTC: INFO: QC.py(180): Changed (4/561) 194 217 220 241 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 12:09:01 10 Feb 2017 UTC: INFO: QC.py(180): Changed (1/561) 220 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 12:09:01 10 Feb 2017 UTC: INFO: QC.py(180): Changed (4/561) 194 217 220 241 to QC_INTERPOLATED because changed corrected temp implies changed speed 12:09:01 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.25 cm/s 12:09:01 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.09 cm/s 12:09:01 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:09:01 10 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (166/561) 119 120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:09:01 10 Feb 2017 UTC: INFO: QC.py(180): Changed (3/561) 2 221 241 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 12:09:01 10 Feb 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/561) 560 to QC_BAD because slow flow in SBE43 12:09:01 10 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (166/561) 119 120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 12:09:01 10 Feb 2017 UTC: INFO: QC.py(180): Changed (3/561) 2 221 241 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 12:09:01 10 Feb 2017 UTC: INFO: QC.py(180): Changed (12/561) 1:6 221:225 561 to QC_BAD because changed salinity implies changed optode oxygen 12:09:01 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:09:01 10 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:09:01 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 12:09:01 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 150: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.14% reduction 12:09:01 10 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.150 12:09:01 10 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:09:01 10 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:09:01 10 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:09:01 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 12:09:01 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 12:10:06 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 12:10:07 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 12:10:07 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 12:10:18 10 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:10:18 10 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:10:18 10 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 12:10:18 10 Feb 2017 UTC /home/sg626/p6260150.log /home/sg626/p6260150.eng /home/sg626/p6260150.asc /home/sg626/p6260150.pro /home/sg626/p6260150.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 12:10:18 10 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:10:18 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:10:18 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:10:18 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:10:18 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:10:18 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:10:18 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:10:18 10 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:10:18 10 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:10:18 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:10:18 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:10:18 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:10:18 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:10:18 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:10:18 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:10:18 10 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:10:18 10 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 12:10:18 10 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 12:10:18 10 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 12:10:18 10 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 12:10:18 10 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:10:18 10 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:10:18 10 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:10:18 10 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 12:10:18 10 Feb 2017 UTC 15:12:00 10 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 1255 15:12:00 10 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 15:14:43 10 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 1379 15:14:43 10 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 15:14:43 10 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 15:14:43 10 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 15:14:43 10 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 15:14:43 10 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170210051442 ] 15:14:43 10 Feb 2017 UTC: INFO: Base.py(1333): PID:1386 15:14:43 10 Feb 2017 UTC: INFO: Base.py(1375): Started processing 15:14:43 10 Feb 2017 UTC 15:14:43 10 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 15:14:43 10 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 15:14:43 10 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 15:14:43 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:14:43 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:151 calls_made:1 call_cycle:0 15:14:43 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:14:43 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:151 calls_made:1 call_cycle:0 15:14:43 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:14:43 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:151 calls_made:1 call_cycle:0 15:14:43 10 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:151 calls_made:1 call_cycle:0 2305.0080 -15753.4820 02/10/17 15:10:00 UTC) to sdrifter@soest.hawaii.edu 15:14:43 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:151 calls_made:1 call_cycle:0 15:14:43 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:14:43 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:151 calls_made:1 call_cycle:0 15:14:43 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:14:43 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:151 calls_made:1 call_cycle:0 15:14:43 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:14:43 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:151 calls_made:1 call_cycle:0 15:14:43 10 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:14:43 10 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 15:14:46 10 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 15:14:47 10 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 15:14:47 10 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 15:14:47 10 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 15:14:47 10 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 15:14:47 10 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 15:14:47 10 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0151lz 15:14:47 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0151lz.x00 15:14:47 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0151lz.x01 15:14:47 10 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0151lz.r in process_file_group 15:14:47 10 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260151.log 15:14:47 10 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 15:14:47 10 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0151dz 15:14:47 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0151dz.x00 15:14:47 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0151dz.x01 15:14:47 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0151dz.x02 15:14:47 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0151dz.x03 15:14:47 10 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0151dz.r in process_file_group 15:14:47 10 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [151] 15:14:47 10 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [151] 15:14:47 10 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260151) for profiles 15:14:47 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 15:14:47 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/541) 541 to QC_BAD because CT out of water 15:14:47 10 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.042m) 15:14:47 10 Feb 2017 UTC: INFO: QC.py(365): Changed (3/541) 196:198 to QC_PROBABLY_BAD because raw temperature spikes 15:14:47 10 Feb 2017 UTC: INFO: QC.py(408): Changed (3/541) 196:198 to QC_PROBABLY_BAD because raw conductivity spikes 15:14:48 10 Feb 2017 UTC: INFO: QC.py(180): Changed (3/541) 196:198 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 15:14:48 10 Feb 2017 UTC: INFO: QC.py(180): Changed (1/541) 541 to QC_BAD because changed raw cond implies changed raw salinity 15:14:48 10 Feb 2017 UTC: INFO: QC.py(365): Changed (3/541) 196:198 to QC_INTERPOLATED because temperature spikes 15:14:48 10 Feb 2017 UTC: INFO: QC.py(408): Changed (3/541) 196:198 to QC_INTERPOLATED because conductivity spikes 15:14:48 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/541) 217:221 to QC_BAD because slow apogee CT flow 15:14:48 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/541) 1:6 to QC_BAD because prior to dive start 15:14:48 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/541) 1:6 217:221 541 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 15:14:48 10 Feb 2017 UTC: INFO: QC.py(180): Changed (12/541) 1:6 217:221 541 to QC_BAD because changed corrected salin implies changed speed 15:14:48 10 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 15:14:48 10 Feb 2017 UTC: INFO: QC.py(180): Changed (3/541) 196:198 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 15:14:48 10 Feb 2017 UTC: INFO: QC.py(180): Changed (3/541) 196:198 to QC_INTERPOLATED because changed corrected temp implies changed speed 15:14:48 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.16 cm/s 15:14:48 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.34 cm/s 15:14:48 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 15:14:48 10 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (162/541) 118:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 15:14:48 10 Feb 2017 UTC: INFO: QC.py(180): Changed (1/541) 196 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 15:14:48 10 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (162/541) 118:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 15:14:48 10 Feb 2017 UTC: INFO: QC.py(180): Changed (1/541) 196 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 15:14:48 10 Feb 2017 UTC: INFO: QC.py(180): Changed (12/541) 1:6 217:221 541 to QC_BAD because changed salinity implies changed optode oxygen 15:14:48 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 15:14:48 10 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 15:14:48 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 15:14:49 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 151: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.22% reduction 15:14:49 10 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.151 15:14:49 10 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 15:14:49 10 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 15:14:49 10 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 15:14:49 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 15:14:49 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 15:15:53 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 15:15:54 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 15:15:54 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 15:16:06 10 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 15:16:06 10 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 15:16:06 10 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 15:16:06 10 Feb 2017 UTC /home/sg626/p6260151.log /home/sg626/p6260151.eng /home/sg626/p6260151.asc /home/sg626/p6260151.pro /home/sg626/p6260151.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 15:16:06 10 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 15:16:06 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:16:06 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:16:06 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:16:06 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:16:06 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:16:06 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:16:06 10 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:16:06 10 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 15:16:06 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:16:06 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:16:06 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:16:06 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:16:06 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:16:06 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:16:06 10 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:16:06 10 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 15:16:06 10 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 15:16:06 10 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 15:16:06 10 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 15:16:06 10 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 15:16:06 10 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 15:16:06 10 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 15:16:06 10 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 15:16:06 10 Feb 2017 UTC 18:22:29 10 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 6689 18:22:29 10 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 18:25:08 10 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 6796 18:25:08 10 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:25:08 10 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 18:25:08 10 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 18:25:08 10 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:25:08 10 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170210082507 ] 18:25:08 10 Feb 2017 UTC: INFO: Base.py(1333): PID:6803 18:25:08 10 Feb 2017 UTC: INFO: Base.py(1375): Started processing 18:25:08 10 Feb 2017 UTC 18:25:08 10 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 18:25:09 10 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 18:25:09 10 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:25:09 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:25:09 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:152 calls_made:1 call_cycle:0 18:25:09 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:25:09 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:152 calls_made:1 call_cycle:0 18:25:09 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:25:09 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:152 calls_made:1 call_cycle:0 18:25:09 10 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:152 calls_made:1 call_cycle:0 2306.9080 -15752.5780 02/10/17 18:20:29 UTC) to sdrifter@soest.hawaii.edu 18:25:09 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:152 calls_made:1 call_cycle:0 18:25:09 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:25:09 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:152 calls_made:1 call_cycle:0 18:25:09 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:25:09 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:152 calls_made:1 call_cycle:0 18:25:09 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:25:09 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:152 calls_made:1 call_cycle:0 18:25:09 10 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:25:09 10 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:25:11 10 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:25:12 10 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:25:12 10 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 18:25:12 10 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:25:12 10 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:25:12 10 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 18:25:12 10 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0152lz 18:25:12 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0152lz.x00 18:25:12 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0152lz.x01 18:25:12 10 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0152lz.r in process_file_group 18:25:12 10 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260152.log 18:25:12 10 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 18:25:12 10 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0152dz 18:25:12 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0152dz.x00 18:25:12 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0152dz.x01 18:25:12 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0152dz.x02 18:25:12 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0152dz.x03 18:25:12 10 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0152dz.r in process_file_group 18:25:13 10 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [152] 18:25:13 10 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [152] 18:25:13 10 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260152) for profiles 18:25:13 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 18:25:13 10 Feb 2017 UTC: INFO: QC.py(365): Changed (13/546) 2 4 183 184 190 191 194 195 228 229 255 256 261 to QC_PROBABLY_BAD because raw temperature spikes 18:25:13 10 Feb 2017 UTC: INFO: QC.py(408): Changed (9/546) 183 184 190 191 194 195 255 256 261 to QC_PROBABLY_BAD because raw conductivity spikes 18:25:13 10 Feb 2017 UTC: INFO: QC.py(180): Changed (13/546) 2 4 183 184 190 191 194 195 228 229 255 256 261 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 18:25:13 10 Feb 2017 UTC: INFO: QC.py(365): Changed (13/546) 2 4 183 184 190 191 194 195 228 229 255 256 261 to QC_INTERPOLATED because temperature spikes 18:25:13 10 Feb 2017 UTC: INFO: QC.py(408): Changed (9/546) 183 184 190 191 194 195 255 256 261 to QC_INTERPOLATED because conductivity spikes 18:25:13 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/546) 227:231 to QC_BAD because slow apogee CT flow 18:25:13 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/546) 1:6 to QC_BAD because prior to dive start 18:25:13 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/546) 1:6 227:231 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 18:25:13 10 Feb 2017 UTC: INFO: QC.py(180): Changed (11/546) 1:6 227:231 to QC_BAD because changed corrected salin implies changed speed 18:25:13 10 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 18:25:13 10 Feb 2017 UTC: INFO: QC.py(180): Changed (9/546) 183 184 190 191 194 195 255 256 261 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 18:25:13 10 Feb 2017 UTC: INFO: QC.py(180): Changed (9/546) 183 184 190 191 194 195 255 256 261 to QC_INTERPOLATED because changed corrected temp implies changed speed 18:25:13 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.83 cm/s 18:25:13 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.13 cm/s 18:25:13 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 18:25:13 10 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (167/546) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 18:25:13 10 Feb 2017 UTC: INFO: QC.py(180): Changed (5/546) 2 4 191 256 261 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 18:25:13 10 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (167/546) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 18:25:13 10 Feb 2017 UTC: INFO: QC.py(180): Changed (5/546) 2 4 191 256 261 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 18:25:13 10 Feb 2017 UTC: INFO: QC.py(180): Changed (11/546) 1:6 227:231 to QC_BAD because changed salinity implies changed optode oxygen 18:25:13 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 18:25:13 10 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 18:25:13 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 18:25:13 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 18:25:13 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 18:25:13 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 18:25:13 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 18:25:13 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 18:25:13 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 18:25:13 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 18:25:14 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 18:25:14 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 18:25:14 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 18:25:14 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 18:25:14 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 18:25:14 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 18:25:14 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 18:25:14 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 18:25:14 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 18:25:14 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 18:25:14 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 18:25:14 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 18:25:14 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 18:25:14 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 18:25:14 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 18:25:14 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 18:25:14 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 18:25:14 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 18:25:14 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 18:25:14 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 18:25:14 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 18:25:14 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 18:25:14 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 18:25:14 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 18:25:14 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 152: Data set size for profile, binned and kkyy files reduced by 11 points, a 2.01% reduction 18:25:14 10 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.152 18:25:14 10 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:25:14 10 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:25:14 10 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:25:14 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 18:25:14 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 18:26:19 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 18:26:19 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 18:26:19 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 18:26:31 10 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:26:31 10 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:26:31 10 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:26:31 10 Feb 2017 UTC /home/sg626/p6260152.log /home/sg626/p6260152.eng /home/sg626/p6260152.asc /home/sg626/p6260152.pro /home/sg626/p6260152.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 18:26:31 10 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:26:31 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:26:31 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:26:31 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:26:31 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:26:31 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:26:31 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:26:31 10 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:26:31 10 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:26:31 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:26:31 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:26:31 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:26:31 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:26:31 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:26:31 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:26:31 10 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:26:31 10 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 18:26:31 10 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 18:26:31 10 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 18:26:31 10 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 18:26:31 10 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:26:31 10 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:26:31 10 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:26:31 10 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 18:26:31 10 Feb 2017 UTC 21:27:42 10 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 12348 21:27:42 10 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:30:15 10 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 12544 21:30:15 10 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:30:15 10 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:30:15 10 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:30:15 10 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:30:15 10 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170210113014 ] 21:30:15 10 Feb 2017 UTC: INFO: Base.py(1333): PID:12559 21:30:15 10 Feb 2017 UTC: INFO: Base.py(1375): Started processing 21:30:15 10 Feb 2017 UTC 21:30:15 10 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:30:15 10 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:30:15 10 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:30:15 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:30:15 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:153 calls_made:1 call_cycle:0 21:30:15 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:30:15 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:153 calls_made:1 call_cycle:0 21:30:15 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:30:15 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:153 calls_made:1 call_cycle:0 21:30:15 10 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:153 calls_made:1 call_cycle:0 2308.6930 -15751.1160 02/10/17 21:25:31 UTC) to sdrifter@soest.hawaii.edu 21:30:15 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:153 calls_made:1 call_cycle:0 21:30:15 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:30:15 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:153 calls_made:1 call_cycle:0 21:30:15 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:30:15 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:153 calls_made:1 call_cycle:0 21:30:15 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:30:15 10 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:153 calls_made:1 call_cycle:0 21:30:15 10 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:30:15 10 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:30:18 10 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:30:19 10 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:30:19 10 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:30:19 10 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:30:19 10 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:30:19 10 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:30:19 10 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0153lz 21:30:19 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0153lz.x00 21:30:19 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0153lz.x01 21:30:19 10 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0153lz.r in process_file_group 21:30:19 10 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260153.log 21:30:19 10 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:30:19 10 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0153dz 21:30:19 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0153dz.x00 21:30:19 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0153dz.x01 21:30:19 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0153dz.x02 21:30:19 10 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0153dz.x03 21:30:19 10 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0153dz.r in process_file_group 21:30:20 10 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [153] 21:30:20 10 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [153] 21:30:20 10 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260153) for profiles 21:30:20 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:30:20 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/532) 530:532 to QC_BAD because CT out of water 21:30:20 10 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.093m) 21:30:20 10 Feb 2017 UTC: INFO: QC.py(365): Changed (6/532) 4 183 199 223 530 531 to QC_PROBABLY_BAD because raw temperature spikes 21:30:20 10 Feb 2017 UTC: INFO: QC.py(408): Changed (3/532) 183 199 223 to QC_PROBABLY_BAD because raw conductivity spikes 21:30:20 10 Feb 2017 UTC: INFO: QC.py(180): Changed (6/532) 4 183 199 223 530 531 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:30:20 10 Feb 2017 UTC: INFO: QC.py(180): Changed (3/532) 530:532 to QC_BAD because changed raw cond implies changed raw salinity 21:30:20 10 Feb 2017 UTC: INFO: QC.py(365): Changed (6/532) 4 183 199 223 530 531 to QC_INTERPOLATED because temperature spikes 21:30:20 10 Feb 2017 UTC: INFO: QC.py(408): Changed (3/532) 183 199 223 to QC_INTERPOLATED because conductivity spikes 21:30:20 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/532) 221:225 to QC_BAD because slow apogee CT flow 21:30:20 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/532) 1:6 to QC_BAD because prior to dive start 21:30:20 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/532) 528 529 to QC_BAD because end of climb 21:30:20 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/532) 1:6 221:225 528:532 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:30:20 10 Feb 2017 UTC: INFO: QC.py(180): Changed (16/532) 1:6 221:225 528:532 to QC_BAD because changed corrected salin implies changed speed 21:30:20 10 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:30:20 10 Feb 2017 UTC: INFO: QC.py(180): Changed (2/532) 183 199 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 21:30:20 10 Feb 2017 UTC: INFO: QC.py(180): Changed (2/532) 183 199 to QC_INTERPOLATED because changed corrected temp implies changed speed 21:30:20 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.25 cm/s 21:30:20 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.95 cm/s 21:30:20 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:30:20 10 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (166/532) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:30:20 10 Feb 2017 UTC: INFO: QC.py(180): Changed (3/532) 4 530 531 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:30:20 10 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (166/532) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:30:20 10 Feb 2017 UTC: INFO: QC.py(180): Changed (3/532) 4 530 531 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:30:20 10 Feb 2017 UTC: INFO: QC.py(180): Changed (16/532) 1:6 221:225 528:532 to QC_BAD because changed salinity implies changed optode oxygen 21:30:20 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:30:20 10 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:30:20 10 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:30:21 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 153: Data set size for profile, binned and kkyy files reduced by 16 points, a 3.01% reduction 21:30:21 10 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.153 21:30:21 10 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:30:21 10 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:30:21 10 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:30:21 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:30:21 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 21:31:26 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 21:31:26 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 21:31:26 10 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 21:31:38 10 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:31:38 10 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:31:38 10 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:31:38 10 Feb 2017 UTC /home/sg626/p6260153.log /home/sg626/p6260153.eng /home/sg626/p6260153.asc /home/sg626/p6260153.pro /home/sg626/p6260153.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 21:31:38 10 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:31:38 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:31:38 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:31:38 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:31:38 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:31:38 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:31:38 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:31:38 10 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:31:38 10 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:31:38 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:31:38 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:31:38 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:31:38 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:31:38 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:31:38 10 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:31:38 10 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:31:38 10 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:31:38 10 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:31:38 10 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:31:38 10 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:31:38 10 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:31:38 10 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:31:38 10 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:31:38 10 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 21:31:38 10 Feb 2017 UTC 00:35:01 11 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 17540 00:35:01 11 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:36:19 11 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 17633 00:36:19 11 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:36:19 11 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:36:19 11 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:36:19 11 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:36:19 11 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170210143618 ] 00:36:19 11 Feb 2017 UTC: INFO: Base.py(1333): PID:17640 00:36:19 11 Feb 2017 UTC: INFO: Base.py(1375): Started processing 00:36:19 11 Feb 2017 UTC 00:36:19 11 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:36:19 11 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:36:19 11 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:36:19 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:36:19 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:154 calls_made:1 call_cycle:0 00:36:19 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:36:19 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:154 calls_made:1 call_cycle:0 00:36:19 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:36:19 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:154 calls_made:1 call_cycle:0 00:36:19 11 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:154 calls_made:1 call_cycle:0 2308.5490 -15749.8100 02/11/17 00:32:54 UTC) to sdrifter@soest.hawaii.edu 00:36:19 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:154 calls_made:1 call_cycle:0 00:36:19 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:36:19 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:154 calls_made:1 call_cycle:0 00:36:19 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:36:19 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:154 calls_made:1 call_cycle:0 00:36:19 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:36:19 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:154 calls_made:1 call_cycle:0 00:36:19 11 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:36:19 11 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:36:22 11 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:36:23 11 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:36:23 11 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:36:23 11 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:36:23 11 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:36:23 11 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:36:23 11 Feb 2017 UTC: WARNING: Base.py(1624): No dives to process 00:36:23 11 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [] 00:36:23 11 Feb 2017 UTC: INFO: Base.py(1780): No dives found to profile 00:36:23 11 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.154 00:36:23 11 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:36:23 11 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:36:23 11 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:36:23 11 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:36:23 11 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:36:23 11 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:36:23 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:36:23 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:36:23 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:36:23 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:36:23 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:36:23 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:36:23 11 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:36:23 11 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:36:23 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:36:23 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:36:23 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:36:23 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:36:23 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:36:23 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:36:23 11 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:36:23 11 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:36:23 11 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:36:23 11 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:36:23 11 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:36:23 11 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:36:23 11 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:36:23 11 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:36:23 11 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 00:36:23 11 Feb 2017 UTC 00:40:23 11 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 17999 00:40:23 11 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:43:09 11 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 18116 00:43:09 11 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:43:09 11 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:43:09 11 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:43:09 11 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:43:09 11 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170210144308 ] 00:43:09 11 Feb 2017 UTC: INFO: Base.py(1333): PID:18124 00:43:09 11 Feb 2017 UTC: INFO: Base.py(1375): Started processing 00:43:09 11 Feb 2017 UTC 00:43:09 11 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:43:10 11 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:43:10 11 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:43:10 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:43:10 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:154 calls_made:3 call_cycle:0 00:43:10 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:43:10 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:154 calls_made:3 call_cycle:0 00:43:10 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:43:10 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:154 calls_made:3 call_cycle:0 00:43:10 11 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:154 calls_made:3 call_cycle:0 2308.5490 -15749.8100 02/11/17 00:32:54 UTC) to sdrifter@soest.hawaii.edu 00:43:10 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:154 calls_made:3 call_cycle:0 00:43:10 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:43:10 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:154 calls_made:3 call_cycle:0 00:43:10 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:43:10 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:154 calls_made:3 call_cycle:0 00:43:10 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:43:10 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:154 calls_made:3 call_cycle:0 00:43:10 11 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:43:10 11 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:43:13 11 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:43:13 11 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:43:13 11 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:43:13 11 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:43:13 11 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:43:13 11 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:43:13 11 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0154lz 00:43:13 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0154lz.x00 00:43:13 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0154lz.x01 00:43:13 11 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0154lz.r in process_file_group 00:43:13 11 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260154.log 00:43:13 11 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:43:13 11 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0154dz 00:43:13 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0154dz.x00 00:43:13 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0154dz.x01 00:43:13 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0154dz.x02 00:43:13 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0154dz.x03 00:43:13 11 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0154dz.r in process_file_group 00:43:14 11 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [154] 00:43:14 11 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [154] 00:43:14 11 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260154) for profiles 00:43:14 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 00:43:14 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/554) 553 554 to QC_BAD because CT out of water 00:43:14 11 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.120m) 00:43:14 11 Feb 2017 UTC: INFO: QC.py(365): Changed (8/554) 2 169 174 176 206 219 251 252 to QC_PROBABLY_BAD because raw temperature spikes 00:43:14 11 Feb 2017 UTC: INFO: QC.py(377): Changed (1/554) 554 to QC_BAD because raw salinity below bound 00:43:14 11 Feb 2017 UTC: INFO: QC.py(408): Changed (3/554) 174 219 251 to QC_PROBABLY_BAD because raw conductivity spikes 00:43:14 11 Feb 2017 UTC: INFO: QC.py(180): Changed (8/554) 2 169 174 176 206 219 251 252 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:43:14 11 Feb 2017 UTC: INFO: QC.py(180): Changed (1/554) 553 to QC_BAD because changed raw cond implies changed raw salinity 00:43:14 11 Feb 2017 UTC: INFO: QC.py(365): Changed (8/554) 2 169 174 176 206 219 251 252 to QC_INTERPOLATED because temperature spikes 00:43:14 11 Feb 2017 UTC: INFO: QC.py(377): Changed (1/554) 554 to QC_BAD because salinity below bound 00:43:14 11 Feb 2017 UTC: INFO: QC.py(408): Changed (3/554) 174 219 251 to QC_INTERPOLATED because conductivity spikes 00:43:14 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/554) 217:221 to QC_BAD because slow apogee CT flow 00:43:14 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/554) 1:6 to QC_BAD because prior to dive start 00:43:14 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/554) 1:6 217:221 553 554 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:43:14 11 Feb 2017 UTC: INFO: QC.py(180): Changed (13/554) 1:6 217:221 553 554 to QC_BAD because changed corrected salin implies changed speed 00:43:15 11 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:43:15 11 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 154 interp_salinity data_points in_between 260 324 % suspect thermal-inertia points 308 309 00:43:15 11 Feb 2017 UTC: INFO: QC.py(180): Changed (6/554) 169 174 176 206 251 252 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 00:43:15 11 Feb 2017 UTC: INFO: QC.py(180): Changed (6/554) 169 174 176 206 251 252 to QC_INTERPOLATED because changed corrected temp implies changed speed 00:43:15 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.62 cm/s 00:43:15 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.78 cm/s 00:43:15 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:43:15 11 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (163/554) 114 115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:43:15 11 Feb 2017 UTC: INFO: QC.py(180): Changed (4/554) 2 176 206 251 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:43:15 11 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (163/554) 114 115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 00:43:15 11 Feb 2017 UTC: INFO: QC.py(180): Changed (4/554) 2 176 206 251 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:43:15 11 Feb 2017 UTC: INFO: QC.py(180): Changed (13/554) 1:6 217:221 553 554 to QC_BAD because changed salinity implies changed optode oxygen 00:43:15 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:43:15 11 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:43:15 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 00:43:15 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 154: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.35% reduction 00:43:15 11 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.154 00:43:15 11 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:43:15 11 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:43:15 11 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:43:15 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 00:43:15 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 00:44:21 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 00:44:22 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 00:44:22 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 00:44:34 11 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:44:34 11 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:44:34 11 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:44:34 11 Feb 2017 UTC /home/sg626/p6260154.log /home/sg626/p6260154.eng /home/sg626/p6260154.asc /home/sg626/p6260154.pro /home/sg626/p6260154.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 00:44:34 11 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:44:34 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:44:34 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:44:34 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:44:34 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:44:34 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:44:34 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:44:34 11 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:44:34 11 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:44:34 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:44:34 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:44:34 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:44:34 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:44:34 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:44:34 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:44:34 11 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:44:34 11 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:44:34 11 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:44:34 11 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:44:34 11 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:44:34 11 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:44:34 11 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:44:34 11 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:44:34 11 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 00:44:34 11 Feb 2017 UTC 03:48:20 11 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 23226 03:48:20 11 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:50:58 11 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 23433 03:50:58 11 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:50:58 11 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:50:58 11 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:50:58 11 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:50:58 11 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170210175058 ] 03:50:58 11 Feb 2017 UTC: INFO: Base.py(1333): PID:23440 03:50:58 11 Feb 2017 UTC: INFO: Base.py(1375): Started processing 03:50:58 11 Feb 2017 UTC 03:50:58 11 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:50:59 11 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:50:59 11 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:50:59 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:50:59 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:155 calls_made:1 call_cycle:0 03:50:59 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:50:59 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:155 calls_made:1 call_cycle:0 03:50:59 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:50:59 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:155 calls_made:1 call_cycle:0 03:50:59 11 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:155 calls_made:1 call_cycle:0 2309.6070 -15748.4320 02/11/17 03:46:21 UTC) to sdrifter@soest.hawaii.edu 03:50:59 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:155 calls_made:1 call_cycle:0 03:50:59 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:50:59 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:155 calls_made:1 call_cycle:0 03:50:59 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:50:59 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:155 calls_made:1 call_cycle:0 03:50:59 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:50:59 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:155 calls_made:1 call_cycle:0 03:50:59 11 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:50:59 11 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:51:02 11 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:51:02 11 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:51:02 11 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:51:02 11 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:51:02 11 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:51:02 11 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:51:03 11 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0155lz 03:51:03 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0155lz.x00 03:51:03 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0155lz.x01 03:51:03 11 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0155lz.r in process_file_group 03:51:03 11 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260155.log 03:51:03 11 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:51:03 11 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0155dz 03:51:03 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0155dz.x00 03:51:03 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0155dz.x01 03:51:03 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0155dz.x02 03:51:03 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0155dz.x03 03:51:03 11 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0155dz.r in process_file_group 03:51:03 11 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [155] 03:51:03 11 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [155] 03:51:03 11 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260155) for profiles 03:51:03 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 03:51:03 11 Feb 2017 UTC: INFO: QC.py(365): Changed (4/548) 187 210 211 266 to QC_PROBABLY_BAD because raw temperature spikes 03:51:03 11 Feb 2017 UTC: INFO: QC.py(408): Changed (3/548) 187 210 231 to QC_PROBABLY_BAD because raw conductivity spikes 03:51:03 11 Feb 2017 UTC: INFO: QC.py(180): Changed (4/548) 187 210 211 266 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 03:51:03 11 Feb 2017 UTC: INFO: QC.py(180): Changed (1/548) 231 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 03:51:03 11 Feb 2017 UTC: INFO: QC.py(365): Changed (4/548) 187 210 211 266 to QC_INTERPOLATED because temperature spikes 03:51:03 11 Feb 2017 UTC: INFO: QC.py(408): Changed (3/548) 187 210 231 to QC_INTERPOLATED because conductivity spikes 03:51:03 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/548) 229:233 to QC_BAD because slow apogee CT flow 03:51:03 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/548) 1:6 to QC_BAD because prior to dive start 03:51:03 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/548) 1:6 229:233 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:51:03 11 Feb 2017 UTC: INFO: QC.py(180): Changed (11/548) 1:6 229:233 to QC_BAD because changed corrected salin implies changed speed 03:51:04 11 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 03:51:04 11 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 155 interp_salinity data_points in_between 263 337 % suspect thermal-inertia points 311 03:51:04 11 Feb 2017 UTC: INFO: QC.py(180): Changed (4/548) 187 210 211 266 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 03:51:04 11 Feb 2017 UTC: INFO: QC.py(180): Changed (4/548) 187 210 211 266 to QC_INTERPOLATED because changed corrected temp implies changed speed 03:51:04 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.46 cm/s 03:51:04 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.91 cm/s 03:51:04 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:51:04 11 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (166/548) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:51:04 11 Feb 2017 UTC: INFO: QC.py(180): Changed (2/548) 211 266 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:51:04 11 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (166/548) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 03:51:04 11 Feb 2017 UTC: INFO: QC.py(180): Changed (2/548) 211 266 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 03:51:04 11 Feb 2017 UTC: INFO: QC.py(180): Changed (11/548) 1:6 229:233 to QC_BAD because changed salinity implies changed optode oxygen 03:51:04 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:51:04 11 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:51:04 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 03:51:04 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 155: Data set size for profile, binned and kkyy files reduced by 11 points, a 2.01% reduction 03:51:04 11 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.155 03:51:04 11 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:51:04 11 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:51:04 11 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:51:04 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 03:51:04 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 03:52:11 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 03:52:12 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 03:52:12 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 03:52:24 11 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:52:24 11 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:52:24 11 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:52:24 11 Feb 2017 UTC /home/sg626/p6260155.log /home/sg626/p6260155.eng /home/sg626/p6260155.asc /home/sg626/p6260155.pro /home/sg626/p6260155.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 03:52:24 11 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:52:24 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:52:24 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:52:24 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:52:24 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:52:24 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:52:24 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:52:24 11 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:52:24 11 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:52:24 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:52:24 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:52:24 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:52:24 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:52:24 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:52:24 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:52:24 11 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:52:24 11 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:52:24 11 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:52:24 11 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:52:24 11 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:52:24 11 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:52:24 11 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:52:24 11 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:52:24 11 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 03:52:24 11 Feb 2017 UTC 06:52:28 11 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 28719 06:52:28 11 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:55:07 11 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 28854 06:55:07 11 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:55:07 11 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 06:55:07 11 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 06:55:07 11 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:55:07 11 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170210205507 ] 06:55:07 11 Feb 2017 UTC: INFO: Base.py(1333): PID:28861 06:55:08 11 Feb 2017 UTC: INFO: Base.py(1375): Started processing 06:55:08 11 Feb 2017 UTC 06:55:08 11 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 06:55:08 11 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 06:55:08 11 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:55:08 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:55:08 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:156 calls_made:1 call_cycle:0 06:55:08 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:55:08 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:156 calls_made:1 call_cycle:0 06:55:08 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:55:08 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:156 calls_made:1 call_cycle:0 06:55:08 11 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:156 calls_made:1 call_cycle:0 2310.1650 -15746.8740 02/11/17 06:50:30 UTC) to sdrifter@soest.hawaii.edu 06:55:08 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:156 calls_made:1 call_cycle:0 06:55:08 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:55:08 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:156 calls_made:1 call_cycle:0 06:55:08 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:55:08 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:156 calls_made:1 call_cycle:0 06:55:08 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:55:08 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:156 calls_made:1 call_cycle:0 06:55:08 11 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:55:08 11 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:55:11 11 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:55:11 11 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:55:11 11 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 06:55:11 11 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:55:12 11 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:55:12 11 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 06:55:12 11 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0156lz 06:55:12 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0156lz.x00 06:55:12 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0156lz.x01 06:55:12 11 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0156lz.r in process_file_group 06:55:12 11 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260156.log 06:55:12 11 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 06:55:12 11 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0156dz 06:55:12 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0156dz.x00 06:55:12 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0156dz.x01 06:55:12 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0156dz.x02 06:55:12 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0156dz.x03 06:55:12 11 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0156dz.r in process_file_group 06:55:12 11 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [156] 06:55:12 11 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [156] 06:55:12 11 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260156) for profiles 06:55:12 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 06:55:12 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/552) 551 552 to QC_BAD because CT out of water 06:55:12 11 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.140m) 06:55:12 11 Feb 2017 UTC: INFO: QC.py(365): Changed (2/552) 2 253 to QC_PROBABLY_BAD because raw temperature spikes 06:55:13 11 Feb 2017 UTC: INFO: QC.py(377): Changed (2/552) 551 552 to QC_BAD because raw salinity below bound 06:55:13 11 Feb 2017 UTC: INFO: QC.py(180): Changed (2/552) 2 253 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 06:55:13 11 Feb 2017 UTC: INFO: QC.py(365): Changed (2/552) 2 253 to QC_INTERPOLATED because temperature spikes 06:55:13 11 Feb 2017 UTC: INFO: QC.py(377): Changed (2/552) 551 552 to QC_BAD because salinity below bound 06:55:13 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/552) 221:225 to QC_BAD because slow apogee CT flow 06:55:13 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/552) 1:6 to QC_BAD because prior to dive start 06:55:13 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/552) 550 to QC_BAD because end of climb 06:55:13 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/552) 1:6 221:225 550:552 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 06:55:13 11 Feb 2017 UTC: INFO: QC.py(180): Changed (14/552) 1:6 221:225 550:552 to QC_BAD because changed corrected salin implies changed speed 06:55:13 11 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 06:55:13 11 Feb 2017 UTC: INFO: QC.py(180): Changed (1/552) 253 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 06:55:13 11 Feb 2017 UTC: INFO: QC.py(180): Changed (1/552) 253 to QC_INTERPOLATED because changed corrected temp implies changed speed 06:55:13 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.33 cm/s 06:55:13 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.71 cm/s 06:55:13 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 06:55:13 11 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (159/552) 123:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 06:55:13 11 Feb 2017 UTC: INFO: QC.py(180): Changed (1/552) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 06:55:13 11 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (159/552) 123:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 06:55:13 11 Feb 2017 UTC: INFO: QC.py(180): Changed (1/552) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 06:55:13 11 Feb 2017 UTC: INFO: QC.py(180): Changed (14/552) 1:6 221:225 550:552 to QC_BAD because changed salinity implies changed optode oxygen 06:55:13 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 06:55:13 11 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 06:55:13 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 06:55:13 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 156: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.54% reduction 06:55:14 11 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.156 06:55:14 11 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:55:14 11 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:55:14 11 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:55:14 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 06:55:14 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 06:56:21 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 06:56:21 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 06:56:21 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 06:56:34 11 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:56:34 11 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:56:34 11 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 06:56:34 11 Feb 2017 UTC /home/sg626/p6260156.log /home/sg626/p6260156.eng /home/sg626/p6260156.asc /home/sg626/p6260156.pro /home/sg626/p6260156.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 06:56:34 11 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:56:34 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:56:34 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:56:34 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:56:34 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:56:34 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:56:34 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:56:34 11 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:56:34 11 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:56:34 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:56:34 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:56:34 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:56:34 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:56:34 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:56:34 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:56:34 11 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:56:34 11 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 06:56:34 11 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 06:56:34 11 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 06:56:34 11 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 06:56:34 11 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:56:34 11 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:56:34 11 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:56:34 11 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 06:56:34 11 Feb 2017 UTC 09:48:50 11 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 1246 09:48:50 11 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:51:10 11 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 1450 09:51:10 11 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:51:10 11 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:51:10 11 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:51:10 11 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:51:10 11 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170210235110 ] 09:51:10 11 Feb 2017 UTC: INFO: Base.py(1333): PID:1459 09:51:11 11 Feb 2017 UTC: INFO: Base.py(1375): Started processing 09:51:11 11 Feb 2017 UTC 09:51:11 11 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:51:11 11 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:51:11 11 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:51:11 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:51:11 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:157 calls_made:1 call_cycle:0 09:51:11 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:51:11 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:157 calls_made:1 call_cycle:0 09:51:11 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:51:11 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:157 calls_made:1 call_cycle:0 09:51:11 11 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:157 calls_made:1 call_cycle:0 2311.1320 -15745.0600 02/11/17 09:46:58 UTC) to sdrifter@soest.hawaii.edu 09:51:11 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:157 calls_made:1 call_cycle:0 09:51:11 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:51:11 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:157 calls_made:1 call_cycle:0 09:51:11 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:51:11 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:157 calls_made:1 call_cycle:0 09:51:11 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:51:11 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:157 calls_made:1 call_cycle:0 09:51:11 11 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:51:11 11 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:51:14 11 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:51:14 11 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:51:14 11 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:51:14 11 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:51:14 11 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:51:14 11 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:51:15 11 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0157lz 09:51:15 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0157lz.x00 09:51:15 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0157lz.x01 09:51:15 11 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0157lz.r in process_file_group 09:51:15 11 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260157.log 09:51:15 11 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:51:15 11 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0157dz 09:51:15 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0157dz.x00 09:51:15 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0157dz.x01 09:51:15 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0157dz.x02 09:51:15 11 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0157dz.r in process_file_group 09:51:15 11 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [157] 09:51:15 11 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [157] 09:51:15 11 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260157) for profiles 09:51:15 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 09:51:15 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/486) 485 486 to QC_BAD because CT out of water 09:51:15 11 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.149m) 09:51:15 11 Feb 2017 UTC: INFO: QC.py(365): Changed (2/486) 221 245 to QC_PROBABLY_BAD because raw temperature spikes 09:51:15 11 Feb 2017 UTC: INFO: QC.py(377): Changed (1/486) 485 to QC_BAD because raw salinity below bound 09:51:15 11 Feb 2017 UTC: INFO: QC.py(408): Changed (3/486) 221 242 245 to QC_PROBABLY_BAD because raw conductivity spikes 09:51:15 11 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <185 pt uncorrectable 900.6m SUSPECT weak conductivity anomaly n:-0.31 p:0.32> 09:51:15 11 Feb 2017 UTC: INFO: QC.py(180): Changed (2/486) 221 245 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 09:51:15 11 Feb 2017 UTC: INFO: QC.py(180): Changed (1/486) 242 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 09:51:15 11 Feb 2017 UTC: INFO: QC.py(180): Changed (1/486) 486 to QC_BAD because changed raw cond implies changed raw salinity 09:51:15 11 Feb 2017 UTC: INFO: QC.py(365): Changed (2/486) 221 245 to QC_INTERPOLATED because temperature spikes 09:51:15 11 Feb 2017 UTC: INFO: QC.py(377): Changed (1/486) 485 to QC_BAD because salinity below bound 09:51:15 11 Feb 2017 UTC: INFO: QC.py(408): Changed (3/486) 221 242 245 to QC_INTERPOLATED because conductivity spikes 09:51:15 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/486) 214:218 to QC_BAD because slow apogee CT flow 09:51:15 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/486) 1:6 to QC_BAD because prior to dive start 09:51:15 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/486) 1:6 214:218 485 486 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:51:15 11 Feb 2017 UTC: INFO: QC.py(180): Changed (13/486) 1:6 214:218 485 486 to QC_BAD because changed corrected salin implies changed speed 09:51:16 11 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:51:16 11 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 157 interp_salinity data_points in_between 237 312 % suspect thermal-inertia points 298 09:51:16 11 Feb 2017 UTC: INFO: QC.py(180): Changed (2/486) 221 245 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 09:51:16 11 Feb 2017 UTC: INFO: QC.py(180): Changed (1/486) 242 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 09:51:16 11 Feb 2017 UTC: INFO: QC.py(180): Changed (2/486) 221 245 to QC_INTERPOLATED because changed corrected temp implies changed speed 09:51:16 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 34.42 cm/s 09:51:16 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.71 cm/s 09:51:16 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:51:16 11 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/486) 112:115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:51:16 11 Feb 2017 UTC: INFO: QC.py(180): Changed (1/486) 221 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:51:16 11 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/486) 112:115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 09:51:16 11 Feb 2017 UTC: INFO: QC.py(180): Changed (1/486) 221 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:51:16 11 Feb 2017 UTC: INFO: QC.py(180): Changed (13/486) 1:6 214:218 485 486 to QC_BAD because changed salinity implies changed optode oxygen 09:51:16 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:51:16 11 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:51:16 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 09:51:16 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 157: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.67% reduction 09:51:16 11 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.157 09:51:16 11 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:51:16 11 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:51:16 11 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:51:17 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 09:51:17 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 09:52:24 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 09:52:25 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 09:52:25 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 09:52:37 11 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:52:37 11 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:52:37 11 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:52:37 11 Feb 2017 UTC /home/sg626/p6260157.log /home/sg626/p6260157.eng /home/sg626/p6260157.asc /home/sg626/p6260157.pro /home/sg626/p6260157.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 09:52:37 11 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:52:37 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:52:37 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:52:37 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:52:37 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:52:37 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:52:37 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:52:37 11 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:52:37 11 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:52:37 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:52:37 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:52:37 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:52:37 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:52:37 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:52:37 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:52:37 11 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:52:37 11 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:52:37 11 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:52:37 11 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:52:37 11 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:52:37 11 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:52:37 11 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:52:37 11 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:52:37 11 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 09:52:37 11 Feb 2017 UTC 12:48:08 11 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 6562 12:48:08 11 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:49:47 11 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 6669 12:49:47 11 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:49:47 11 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:49:47 11 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:49:47 11 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:49:47 11 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170211024946 ] 12:49:47 11 Feb 2017 UTC: INFO: Base.py(1333): PID:6676 12:49:47 11 Feb 2017 UTC: INFO: Base.py(1375): Started processing 12:49:47 11 Feb 2017 UTC 12:49:47 11 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:49:48 11 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:49:48 11 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:49:48 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:49:48 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:158 calls_made:1 call_cycle:0 12:49:48 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:49:48 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:158 calls_made:1 call_cycle:0 12:49:48 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:49:48 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:158 calls_made:1 call_cycle:0 12:49:48 11 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:158 calls_made:1 call_cycle:0 2312.0760 -15743.4920 02/11/17 12:46:14 UTC) to sdrifter@soest.hawaii.edu 12:49:48 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:158 calls_made:1 call_cycle:0 12:49:48 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:49:48 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:158 calls_made:1 call_cycle:0 12:49:48 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:49:48 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:158 calls_made:1 call_cycle:0 12:49:48 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:49:48 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:158 calls_made:1 call_cycle:0 12:49:48 11 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:49:48 11 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:49:51 11 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:49:51 11 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:49:51 11 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:49:51 11 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:49:51 11 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:49:51 11 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:49:52 11 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0158lz 12:49:52 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0158lz.x00 12:49:52 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0158lz.x01 12:49:52 11 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0158lz.r in process_file_group 12:49:52 11 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260158.log 12:49:52 11 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:49:52 11 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0158dz 12:49:52 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0158dz.x00 12:49:52 11 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0158dz.r in process_file_group 12:49:52 11 Feb 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0158dz.r - expected 0x1715749293, generated 0x489fae07 12:49:52 11 Feb 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0158dz.r - expected 0x53f4f3ff, generated 0x2e4a 12:49:52 11 Feb 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0158dz.r - skipping 12:49:52 11 Feb 2017 UTC: ERROR: Base.py(272): Could not process sg0158dz - skipping 12:49:52 11 Feb 2017 UTC: WARNING: Base.py(1624): No dives to process 12:49:52 11 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [158] 12:49:52 11 Feb 2017 UTC: INFO: Base.py(1780): No dives found to profile 12:49:52 11 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.158 12:49:52 11 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:49:52 11 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:49:52 11 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:49:52 11 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:49:52 11 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:49:52 11 Feb 2017 UTC: ERROR: Base.py(1960): Dive [158] failed to process completely. The following files were not processed completely: /home/sg626/sg0158dz.r Glider logout not seen - retransmissions from glider possible Consult baselog_170211024946 for details. 12:49:52 11 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 12:49:52 11 Feb 2017 UTC /home/sg626/p6260158.log 12:49:52 11 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:49:52 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:49:52 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:49:52 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:49:52 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:49:52 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:49:52 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:49:52 11 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:49:52 11 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:49:52 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:49:52 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:49:52 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:49:52 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:49:52 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:49:52 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:49:52 11 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:49:52 11 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 12:49:52 11 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 12:49:52 11 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 12:49:52 11 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 12:49:52 11 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:49:52 11 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:49:52 11 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:49:52 11 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 12:49:52 11 Feb 2017 UTC 12:52:05 11 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 7003 12:52:05 11 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:54:00 11 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 7112 12:54:00 11 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:54:00 11 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:54:00 11 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:54:00 11 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:54:00 11 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170211025359 ] 12:54:00 11 Feb 2017 UTC: INFO: Base.py(1333): PID:7119 12:54:00 11 Feb 2017 UTC: INFO: Base.py(1375): Started processing 12:54:00 11 Feb 2017 UTC 12:54:00 11 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:54:00 11 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:54:00 11 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:54:00 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:54:00 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:158 calls_made:2 call_cycle:0 12:54:00 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:54:00 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:158 calls_made:2 call_cycle:0 12:54:00 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:54:00 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:158 calls_made:2 call_cycle:0 12:54:00 11 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:158 calls_made:2 call_cycle:0 2312.0760 -15743.4920 02/11/17 12:46:14 UTC) to sdrifter@soest.hawaii.edu 12:54:01 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:158 calls_made:2 call_cycle:0 12:54:01 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:54:01 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:158 calls_made:2 call_cycle:0 12:54:01 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:54:01 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:158 calls_made:2 call_cycle:0 12:54:01 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:54:01 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:158 calls_made:2 call_cycle:0 12:54:01 11 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:54:01 11 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:54:04 11 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:54:04 11 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:54:04 11 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:54:04 11 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:54:04 11 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:54:04 11 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:54:04 11 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:54:04 11 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0158dz 12:54:04 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0158dz.x00 12:54:04 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0158dz.x01 12:54:04 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0158dz.x02 12:54:04 11 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0158dz.r in process_file_group 12:54:05 11 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [158] 12:54:05 11 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [158] 12:54:05 11 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260158) for profiles 12:54:05 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 12:54:05 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/491) 491 to QC_BAD because CT out of water 12:54:05 11 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.142m) 12:54:05 11 Feb 2017 UTC: INFO: QC.py(365): Changed (11/491) 196 201 212 215 217 218 220 226 232 237 240 to QC_PROBABLY_BAD because raw temperature spikes 12:54:05 11 Feb 2017 UTC: INFO: QC.py(377): Changed (1/491) 491 to QC_BAD because raw salinity below bound 12:54:05 11 Feb 2017 UTC: INFO: QC.py(408): Changed (12/491) 184 192 196 201 212 215 217 218 220 226 237 240 to QC_PROBABLY_BAD because raw conductivity spikes 12:54:05 11 Feb 2017 UTC: INFO: QC.py(180): Changed (11/491) 196 201 212 215 217 218 220 226 232 237 240 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 12:54:05 11 Feb 2017 UTC: INFO: QC.py(180): Changed (2/491) 184 192 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 12:54:05 11 Feb 2017 UTC: INFO: QC.py(365): Changed (11/491) 196 201 212 215 217 218 220 226 232 237 240 to QC_INTERPOLATED because temperature spikes 12:54:05 11 Feb 2017 UTC: INFO: QC.py(377): Changed (1/491) 491 to QC_BAD because salinity below bound 12:54:05 11 Feb 2017 UTC: INFO: QC.py(408): Changed (12/491) 184 192 196 201 212 215 217 218 220 226 237 240 to QC_INTERPOLATED because conductivity spikes 12:54:05 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/491) 215:219 to QC_BAD because slow apogee CT flow 12:54:05 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/491) 1:6 to QC_BAD because prior to dive start 12:54:05 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/491) 490 to QC_BAD because end of climb 12:54:05 11 Feb 2017 UTC: INFO: QC.py(488): Changed (1/491) 220 to QC_PROBABLY_BAD because bad interpolation anchors 12:54:05 11 Feb 2017 UTC: INFO: QC.py(489): SUGGESTION: 158 bad_conductivity data_points in_between 218 220 % bad interpolation anchors 12:54:05 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/491) 1:6 215:219 490 491 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:54:05 11 Feb 2017 UTC: INFO: QC.py(180): Changed (13/491) 1:6 215:219 490 491 to QC_BAD because changed corrected salin implies changed speed 12:54:06 11 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:54:06 11 Feb 2017 UTC: INFO: QC.py(180): Changed (8/491) 196 201 212 220 226 232 237 240 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 12:54:06 11 Feb 2017 UTC: INFO: QC.py(180): Changed (1/491) 220 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 12:54:06 11 Feb 2017 UTC: INFO: QC.py(180): Changed (2/491) 184 192 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 12:54:06 11 Feb 2017 UTC: INFO: QC.py(180): Changed (8/491) 196 201 212 220 226 232 237 240 to QC_INTERPOLATED because changed corrected temp implies changed speed 12:54:06 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 34.41 cm/s 12:54:06 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.72 cm/s 12:54:06 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:54:06 11 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (162/491) 113:115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:54:06 11 Feb 2017 UTC: INFO: QC.py(180): Changed (3/491) 196 201 226 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 12:54:06 11 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (162/491) 113:115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 12:54:06 11 Feb 2017 UTC: INFO: QC.py(180): Changed (3/491) 196 201 226 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 12:54:06 11 Feb 2017 UTC: INFO: QC.py(180): Changed (13/491) 1:6 215:219 490 491 to QC_BAD because changed salinity implies changed optode oxygen 12:54:06 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:54:06 11 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:54:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 12:54:06 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 158: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.65% reduction 12:54:06 11 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.158 12:54:06 11 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:54:06 11 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:54:06 11 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:54:06 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 12:54:06 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 12:55:13 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 12:55:14 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 12:55:14 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 12:55:26 11 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:55:26 11 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:55:26 11 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 12:55:26 11 Feb 2017 UTC /home/sg626/p6260158.eng /home/sg626/p6260158.asc /home/sg626/p6260158.pro /home/sg626/p6260158.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 12:55:26 11 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:55:26 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:55:26 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:55:26 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:55:26 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:55:26 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:55:26 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:55:26 11 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:55:26 11 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:55:26 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:55:26 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:55:26 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:55:26 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:55:26 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:55:26 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:55:26 11 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:55:26 11 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 12:55:26 11 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 12:55:26 11 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 12:55:26 11 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 12:55:26 11 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:55:26 11 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:55:26 11 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:55:26 11 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 12:55:26 11 Feb 2017 UTC 15:45:57 11 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 11955 15:45:57 11 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 15:48:20 11 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 12065 15:48:20 11 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 15:48:20 11 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 15:48:20 11 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 15:48:20 11 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 15:48:20 11 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170211054820 ] 15:48:20 11 Feb 2017 UTC: INFO: Base.py(1333): PID:12072 15:48:20 11 Feb 2017 UTC: INFO: Base.py(1375): Started processing 15:48:20 11 Feb 2017 UTC 15:48:20 11 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 15:48:21 11 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 15:48:21 11 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 15:48:21 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:48:21 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:159 calls_made:1 call_cycle:0 15:48:21 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:48:21 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:159 calls_made:1 call_cycle:0 15:48:21 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:48:21 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:159 calls_made:1 call_cycle:0 15:48:21 11 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:159 calls_made:1 call_cycle:0 2312.8460 -15742.4120 02/11/17 15:44:00 UTC) to sdrifter@soest.hawaii.edu 15:48:21 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:159 calls_made:1 call_cycle:0 15:48:21 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:48:21 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:159 calls_made:1 call_cycle:0 15:48:21 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:48:21 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:159 calls_made:1 call_cycle:0 15:48:21 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:48:21 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:159 calls_made:1 call_cycle:0 15:48:21 11 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:48:21 11 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 15:48:24 11 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 15:48:24 11 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 15:48:24 11 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 15:48:24 11 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 15:48:24 11 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 15:48:24 11 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 15:48:25 11 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0159lz 15:48:25 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0159lz.x00 15:48:25 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0159lz.x01 15:48:25 11 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0159lz.r in process_file_group 15:48:25 11 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260159.log 15:48:25 11 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 15:48:25 11 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0159dz 15:48:25 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0159dz.x00 15:48:25 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0159dz.x01 15:48:25 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0159dz.x02 15:48:25 11 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0159dz.r in process_file_group 15:48:25 11 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [159] 15:48:25 11 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [159] 15:48:25 11 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260159) for profiles 15:48:25 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 15:48:25 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/464) 463 464 to QC_BAD because CT out of water 15:48:25 11 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.164m) 15:48:25 11 Feb 2017 UTC: INFO: QC.py(365): Changed (18/464) 4 5 170 181 184 186 189 194 196 197 199 201 203 ... to QC_PROBABLY_BAD because raw temperature spikes 15:48:25 11 Feb 2017 UTC: INFO: QC.py(377): Changed (1/464) 464 to QC_BAD because raw salinity below bound 15:48:25 11 Feb 2017 UTC: INFO: QC.py(408): Changed (17/464) 170 174 181 184 189 192 194 196 197 199 201 203 ... to QC_PROBABLY_BAD because raw conductivity spikes 15:48:25 11 Feb 2017 UTC: INFO: QC.py(180): Changed (18/464) 4 5 170 181 184 186 189 194 196 197 199 201 203 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 15:48:25 11 Feb 2017 UTC: INFO: QC.py(180): Changed (2/464) 174 192 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 15:48:25 11 Feb 2017 UTC: INFO: QC.py(180): Changed (1/464) 463 to QC_BAD because changed raw cond implies changed raw salinity 15:48:25 11 Feb 2017 UTC: INFO: QC.py(365): Changed (18/464) 4 5 170 181 184 186 189 194 196 197 199 201 203 ... to QC_INTERPOLATED because temperature spikes 15:48:25 11 Feb 2017 UTC: INFO: QC.py(377): Changed (1/464) 464 to QC_BAD because salinity below bound 15:48:25 11 Feb 2017 UTC: INFO: QC.py(408): Changed (17/464) 170 174 181 184 189 192 194 196 197 199 201 203 ... to QC_INTERPOLATED because conductivity spikes 15:48:25 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/464) 216:220 to QC_BAD because slow apogee CT flow 15:48:25 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/464) 1:6 to QC_BAD because prior to dive start 15:48:25 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/464) 1:6 216:220 463 464 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 15:48:25 11 Feb 2017 UTC: INFO: QC.py(180): Changed (13/464) 1:6 216:220 463 464 to QC_BAD because changed corrected salin implies changed speed 15:48:26 11 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 15:48:26 11 Feb 2017 UTC: INFO: QC.py(180): Changed (16/464) 170 181 184 186 189 194 196 197 199 201 203 227 ... to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 15:48:26 11 Feb 2017 UTC: INFO: QC.py(180): Changed (2/464) 174 192 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 15:48:26 11 Feb 2017 UTC: INFO: QC.py(180): Changed (16/464) 170 181 184 186 189 194 196 197 199 201 203 227 ... to QC_INTERPOLATED because changed corrected temp implies changed speed 15:48:26 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 35.74 cm/s 15:48:26 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.86 cm/s 15:48:26 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 15:48:26 11 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/464) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 15:48:26 11 Feb 2017 UTC: INFO: QC.py(180): Changed (6/464) 4 5 181 186 196 201 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 15:48:26 11 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/464) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 15:48:26 11 Feb 2017 UTC: INFO: QC.py(180): Changed (6/464) 4 5 181 186 196 201 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 15:48:26 11 Feb 2017 UTC: INFO: QC.py(180): Changed (13/464) 1:6 216:220 463 464 to QC_BAD because changed salinity implies changed optode oxygen 15:48:26 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 15:48:26 11 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 15:48:26 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 15:48:26 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 159: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.80% reduction 15:48:26 11 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.159 15:48:26 11 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 15:48:26 11 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 15:48:26 11 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 15:48:26 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 15:48:26 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 15:49:34 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 15:49:35 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 15:49:35 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 15:49:47 11 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 15:49:47 11 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 15:49:47 11 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 15:49:47 11 Feb 2017 UTC /home/sg626/p6260159.log /home/sg626/p6260159.eng /home/sg626/p6260159.asc /home/sg626/p6260159.pro /home/sg626/p6260159.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 15:49:47 11 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 15:49:47 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:49:47 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:49:47 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:49:47 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:49:47 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:49:47 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:49:47 11 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:49:47 11 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 15:49:47 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:49:47 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:49:47 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:49:47 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:49:47 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:49:47 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:49:47 11 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:49:47 11 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 15:49:47 11 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 15:49:47 11 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 15:49:47 11 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 15:49:47 11 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 15:49:47 11 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 15:49:47 11 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 15:49:47 11 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 15:49:47 11 Feb 2017 UTC 18:43:22 11 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 17325 18:43:22 11 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 18:46:00 11 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 17447 18:46:00 11 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:46:00 11 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 18:46:00 11 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 18:46:00 11 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:46:00 11 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170211084559 ] 18:46:00 11 Feb 2017 UTC: INFO: Base.py(1333): PID:17454 18:46:00 11 Feb 2017 UTC: INFO: Base.py(1375): Started processing 18:46:00 11 Feb 2017 UTC 18:46:00 11 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 18:46:01 11 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 18:46:01 11 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:46:01 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:46:01 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:160 calls_made:1 call_cycle:0 18:46:01 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:46:01 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:160 calls_made:1 call_cycle:0 18:46:01 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:46:01 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:160 calls_made:1 call_cycle:0 18:46:01 11 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:160 calls_made:1 call_cycle:0 2313.7900 -15741.0240 02/11/17 18:41:25 UTC) to sdrifter@soest.hawaii.edu 18:46:01 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:160 calls_made:1 call_cycle:0 18:46:01 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:46:01 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:160 calls_made:1 call_cycle:0 18:46:01 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:46:01 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:160 calls_made:1 call_cycle:0 18:46:01 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:46:01 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:160 calls_made:1 call_cycle:0 18:46:01 11 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:46:01 11 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:46:04 11 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:46:04 11 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:46:04 11 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 18:46:04 11 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:46:04 11 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:46:04 11 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 18:46:05 11 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0160lz 18:46:05 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0160lz.x00 18:46:05 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0160lz.x01 18:46:05 11 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0160lz.r in process_file_group 18:46:05 11 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260160.log 18:46:05 11 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 18:46:05 11 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0160dz 18:46:05 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0160dz.x00 18:46:05 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0160dz.x01 18:46:05 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0160dz.x02 18:46:05 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0160dz.x03 18:46:05 11 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0160dz.r in process_file_group 18:46:05 11 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [160] 18:46:05 11 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [160] 18:46:05 11 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260160) for profiles 18:46:05 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 18:46:05 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/495) 495 to QC_BAD because CT out of water 18:46:05 11 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.090m) 18:46:05 11 Feb 2017 UTC: INFO: QC.py(365): Changed (19/495) 2 177 182 183 185:188 192 193 208 218 220 236 238 ... to QC_PROBABLY_BAD because raw temperature spikes 18:46:05 11 Feb 2017 UTC: INFO: QC.py(377): Changed (1/495) 495 to QC_BAD because raw salinity below bound 18:46:05 11 Feb 2017 UTC: INFO: QC.py(408): Changed (18/495) 177 182 183 185:188 192 198 208 211 218 220 236 ... to QC_PROBABLY_BAD because raw conductivity spikes 18:46:05 11 Feb 2017 UTC: INFO: QC.py(180): Changed (19/495) 2 177 182 183 185:188 192 193 208 218 220 236 238 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 18:46:05 11 Feb 2017 UTC: INFO: QC.py(180): Changed (2/495) 198 211 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 18:46:05 11 Feb 2017 UTC: INFO: QC.py(365): Changed (19/495) 2 177 182 183 185:188 192 193 208 218 220 236 238 ... to QC_INTERPOLATED because temperature spikes 18:46:05 11 Feb 2017 UTC: INFO: QC.py(377): Changed (1/495) 495 to QC_BAD because salinity below bound 18:46:05 11 Feb 2017 UTC: INFO: QC.py(408): Changed (18/495) 177 182 183 185:188 192 198 208 211 218 220 236 ... to QC_INTERPOLATED because conductivity spikes 18:46:05 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/495) 218:222 to QC_BAD because slow apogee CT flow 18:46:05 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/495) 1:6 to QC_BAD because prior to dive start 18:46:05 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/495) 494 to QC_BAD because end of climb 18:46:05 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/495) 1:6 218:222 494 495 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 18:46:05 11 Feb 2017 UTC: INFO: QC.py(180): Changed (13/495) 1:6 218:222 494 495 to QC_BAD because changed corrected salin implies changed speed 18:46:06 11 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 18:46:06 11 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 160 interp_salinity data_points in_between 266 316 % suspect thermal-inertia points 305 18:46:06 11 Feb 2017 UTC: INFO: QC.py(180): Changed (16/495) 177 182 183 185:188 192 193 208 236 238 240 248 ... to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 18:46:06 11 Feb 2017 UTC: INFO: QC.py(180): Changed (2/495) 198 211 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 18:46:06 11 Feb 2017 UTC: INFO: QC.py(180): Changed (16/495) 177 182 183 185:188 192 193 208 236 238 240 248 ... to QC_INTERPOLATED because changed corrected temp implies changed speed 18:46:06 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 34.04 cm/s 18:46:06 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.91 cm/s 18:46:06 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 18:46:06 11 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/495) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 18:46:06 11 Feb 2017 UTC: INFO: QC.py(180): Changed (4/495) 2 186 236 251 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 18:46:06 11 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/495) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 18:46:06 11 Feb 2017 UTC: INFO: QC.py(180): Changed (4/495) 2 186 236 251 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 18:46:06 11 Feb 2017 UTC: INFO: QC.py(180): Changed (13/495) 1:6 218:222 494 495 to QC_BAD because changed salinity implies changed optode oxygen 18:46:06 11 Feb 2017 UTC: INFO: QC.py(180): Changed (1/495) 211 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 18:46:06 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 18:46:06 11 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 18:46:06 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 18:46:06 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 160: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.63% reduction 18:46:06 11 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.160 18:46:06 11 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:46:06 11 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:46:06 11 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:46:06 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 18:46:06 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 18:47:15 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 18:47:15 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 18:47:15 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 18:47:28 11 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:47:28 11 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:47:28 11 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:47:28 11 Feb 2017 UTC /home/sg626/p6260160.log /home/sg626/p6260160.eng /home/sg626/p6260160.asc /home/sg626/p6260160.pro /home/sg626/p6260160.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 18:47:28 11 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:47:28 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:47:28 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:47:28 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:47:28 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:47:28 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:47:28 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:47:28 11 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:47:28 11 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:47:28 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:47:28 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:47:28 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:47:28 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:47:28 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:47:28 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:47:28 11 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:47:28 11 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 18:47:28 11 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 18:47:28 11 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 18:47:28 11 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 18:47:28 11 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:47:28 11 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:47:28 11 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:47:28 11 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 18:47:28 11 Feb 2017 UTC 21:48:59 11 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 22486 21:48:59 11 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:51:35 11 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 22751 21:51:35 11 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:51:35 11 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:51:35 11 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:51:35 11 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:51:35 11 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170211115135 ] 21:51:35 11 Feb 2017 UTC: INFO: Base.py(1333): PID:22759 21:51:35 11 Feb 2017 UTC: INFO: Base.py(1375): Started processing 21:51:35 11 Feb 2017 UTC 21:51:35 11 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:51:36 11 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:51:36 11 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:51:36 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:51:36 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:161 calls_made:1 call_cycle:0 21:51:36 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:51:36 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:161 calls_made:1 call_cycle:0 21:51:36 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:51:36 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:161 calls_made:1 call_cycle:0 21:51:36 11 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:161 calls_made:1 call_cycle:0 2314.7980 -15739.1150 02/11/17 21:46:55 UTC) to sdrifter@soest.hawaii.edu 21:51:36 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:161 calls_made:1 call_cycle:0 21:51:36 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:51:36 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:161 calls_made:1 call_cycle:0 21:51:36 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:51:36 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:161 calls_made:1 call_cycle:0 21:51:36 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:51:36 11 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:161 calls_made:1 call_cycle:0 21:51:36 11 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:51:36 11 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:51:39 11 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:51:40 11 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:51:40 11 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:51:40 11 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:51:40 11 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:51:40 11 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:51:40 11 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0161lz 21:51:40 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0161lz.x00 21:51:40 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0161lz.x01 21:51:40 11 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0161lz.r in process_file_group 21:51:40 11 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260161.log 21:51:40 11 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:51:40 11 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0161dz 21:51:40 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0161dz.x00 21:51:40 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0161dz.x01 21:51:40 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0161dz.x02 21:51:40 11 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0161dz.x03 21:51:40 11 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0161dz.r in process_file_group 21:51:40 11 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [161] 21:51:40 11 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [161] 21:51:40 11 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260161) for profiles 21:51:40 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:51:41 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/562) 560 561 to QC_BAD because CT out of water 21:51:41 11 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.199m) 21:51:41 11 Feb 2017 UTC: INFO: QC.py(365): Changed (11/562) 2 177 181 190 191 199 217 227 230 236 561 to QC_PROBABLY_BAD because raw temperature spikes 21:51:41 11 Feb 2017 UTC: INFO: QC.py(377): Changed (1/562) 560 to QC_BAD because raw salinity below bound 21:51:41 11 Feb 2017 UTC: INFO: QC.py(408): Changed (9/562) 177 181 183 190 191 198 199 230 236 to QC_PROBABLY_BAD because raw conductivity spikes 21:51:41 11 Feb 2017 UTC: INFO: QC.py(180): Changed (11/562) 2 177 181 190 191 199 217 227 230 236 561 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:51:41 11 Feb 2017 UTC: INFO: QC.py(180): Changed (2/562) 183 198 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 21:51:41 11 Feb 2017 UTC: INFO: QC.py(180): Changed (1/562) 561 to QC_BAD because changed raw cond implies changed raw salinity 21:51:41 11 Feb 2017 UTC: INFO: QC.py(365): Changed (11/562) 2 177 181 190 191 199 217 227 230 236 561 to QC_INTERPOLATED because temperature spikes 21:51:41 11 Feb 2017 UTC: INFO: QC.py(377): Changed (1/562) 560 to QC_BAD because salinity below bound 21:51:41 11 Feb 2017 UTC: INFO: QC.py(408): Changed (9/562) 177 181 183 190 191 198 199 230 236 to QC_INTERPOLATED because conductivity spikes 21:51:41 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/562) 215:219 to QC_BAD because slow apogee CT flow 21:51:41 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/562) 1:6 to QC_BAD because prior to dive start 21:51:41 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/562) 559 562 to QC_BAD because end of climb 21:51:41 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/562) 1:6 215:219 559:562 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:51:41 11 Feb 2017 UTC: INFO: QC.py(180): Changed (15/562) 1:6 215:219 559:562 to QC_BAD because changed corrected salin implies changed speed 21:51:41 11 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:51:41 11 Feb 2017 UTC: INFO: QC.py(180): Changed (8/562) 177 181 190 191 199 227 230 236 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 21:51:41 11 Feb 2017 UTC: INFO: QC.py(180): Changed (2/562) 183 198 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 21:51:41 11 Feb 2017 UTC: INFO: QC.py(180): Changed (8/562) 177 181 190 191 199 227 230 236 to QC_INTERPOLATED because changed corrected temp implies changed speed 21:51:41 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.33 cm/s 21:51:41 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.92 cm/s 21:51:41 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:51:41 11 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (159/562) 118:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:51:41 11 Feb 2017 UTC: INFO: QC.py(180): Changed (5/562) 2 181 191 236 561 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:51:41 11 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (159/562) 118:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:51:41 11 Feb 2017 UTC: INFO: QC.py(180): Changed (5/562) 2 181 191 236 561 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:51:41 11 Feb 2017 UTC: INFO: QC.py(180): Changed (15/562) 1:6 215:219 559:562 to QC_BAD because changed salinity implies changed optode oxygen 21:51:41 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:51:41 11 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:51:41 11 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:51:42 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 161: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.67% reduction 21:51:42 11 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.161 21:51:42 11 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:51:42 11 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:51:42 11 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:51:42 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:51:42 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 21:52:51 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 21:52:52 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 21:52:52 11 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 21:53:05 11 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:53:05 11 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:53:05 11 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:53:05 11 Feb 2017 UTC /home/sg626/p6260161.log /home/sg626/p6260161.eng /home/sg626/p6260161.asc /home/sg626/p6260161.pro /home/sg626/p6260161.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 21:53:05 11 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:53:05 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:53:05 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:53:05 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:53:05 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:53:05 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:53:05 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:53:05 11 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:53:05 11 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:53:05 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:53:05 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:53:05 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:53:05 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:53:05 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:53:05 11 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:53:05 11 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:53:05 11 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:53:05 11 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:53:05 11 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:53:05 11 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:53:05 11 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:53:05 11 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:53:05 11 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:53:05 11 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 21:53:05 11 Feb 2017 UTC 00:45:57 12 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 27554 00:45:57 12 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:48:19 12 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 27673 00:48:19 12 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:48:19 12 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:48:19 12 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:48:19 12 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:48:19 12 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170211144819 ] 00:48:19 12 Feb 2017 UTC: INFO: Base.py(1333): PID:27680 00:48:19 12 Feb 2017 UTC: INFO: Base.py(1375): Started processing 00:48:19 12 Feb 2017 UTC 00:48:19 12 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:48:20 12 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:48:20 12 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:48:20 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:48:20 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:162 calls_made:1 call_cycle:0 00:48:20 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:48:20 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:162 calls_made:1 call_cycle:0 00:48:20 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:48:20 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:162 calls_made:1 call_cycle:0 00:48:20 12 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:162 calls_made:1 call_cycle:0 2315.5970 -15737.3100 02/12/17 00:44:00 UTC) to sdrifter@soest.hawaii.edu 00:48:20 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:162 calls_made:1 call_cycle:0 00:48:20 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:48:20 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:162 calls_made:1 call_cycle:0 00:48:20 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:48:20 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:162 calls_made:1 call_cycle:0 00:48:20 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:48:20 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:162 calls_made:1 call_cycle:0 00:48:20 12 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:48:20 12 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:48:23 12 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:48:24 12 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:48:24 12 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:48:24 12 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:48:24 12 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:48:24 12 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:48:24 12 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0162lz 00:48:24 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0162lz.x00 00:48:24 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0162lz.x01 00:48:24 12 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0162lz.r in process_file_group 00:48:24 12 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260162.log 00:48:24 12 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:48:24 12 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0162dz 00:48:24 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0162dz.x00 00:48:24 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0162dz.x01 00:48:24 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0162dz.x02 00:48:24 12 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0162dz.r in process_file_group 00:48:24 12 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [162] 00:48:24 12 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [162] 00:48:24 12 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260162) for profiles 00:48:24 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 00:48:25 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/483) 481:483 to QC_BAD because CT out of water 00:48:25 12 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.234m) 00:48:25 12 Feb 2017 UTC: INFO: QC.py(365): Changed (6/483) 3 4 192 223 245 482 to QC_PROBABLY_BAD because raw temperature spikes 00:48:25 12 Feb 2017 UTC: INFO: QC.py(377): Changed (1/483) 482 to QC_BAD because raw salinity below bound 00:48:25 12 Feb 2017 UTC: INFO: QC.py(408): Changed (3/483) 192 223 245 to QC_PROBABLY_BAD because raw conductivity spikes 00:48:25 12 Feb 2017 UTC: INFO: QC.py(180): Changed (5/483) 3 4 192 223 245 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:48:25 12 Feb 2017 UTC: INFO: QC.py(180): Changed (2/483) 481 483 to QC_BAD because changed raw cond implies changed raw salinity 00:48:25 12 Feb 2017 UTC: INFO: QC.py(365): Changed (6/483) 3 4 192 223 245 482 to QC_INTERPOLATED because temperature spikes 00:48:25 12 Feb 2017 UTC: INFO: QC.py(377): Changed (1/483) 482 to QC_BAD because salinity below bound 00:48:25 12 Feb 2017 UTC: INFO: QC.py(408): Changed (3/483) 192 223 245 to QC_INTERPOLATED because conductivity spikes 00:48:25 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/483) 221:225 to QC_BAD because slow apogee CT flow 00:48:25 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/483) 1:6 to QC_BAD because prior to dive start 00:48:25 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/483) 1:6 221:225 481:483 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:48:25 12 Feb 2017 UTC: INFO: QC.py(180): Changed (14/483) 1:6 221:225 481:483 to QC_BAD because changed corrected salin implies changed speed 00:48:25 12 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:48:25 12 Feb 2017 UTC: INFO: QC.py(180): Changed (2/483) 192 245 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 00:48:25 12 Feb 2017 UTC: INFO: QC.py(180): Changed (2/483) 192 245 to QC_INTERPOLATED because changed corrected temp implies changed speed 00:48:25 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 35.11 cm/s 00:48:25 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.18 cm/s 00:48:25 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:48:25 12 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/483) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:48:25 12 Feb 2017 UTC: INFO: QC.py(180): Changed (3/483) 3 4 482 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:48:25 12 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/483) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 00:48:25 12 Feb 2017 UTC: INFO: QC.py(180): Changed (3/483) 3 4 482 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:48:25 12 Feb 2017 UTC: INFO: QC.py(180): Changed (14/483) 1:6 221:225 481:483 to QC_BAD because changed salinity implies changed optode oxygen 00:48:25 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:48:25 12 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:48:25 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 00:48:25 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 162: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.90% reduction 00:48:26 12 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.162 00:48:26 12 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:48:26 12 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:48:26 12 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:48:26 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 00:48:26 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 00:49:36 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 00:49:37 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 00:49:37 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 00:49:49 12 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:49:49 12 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:49:49 12 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:49:49 12 Feb 2017 UTC /home/sg626/p6260162.log /home/sg626/p6260162.eng /home/sg626/p6260162.asc /home/sg626/p6260162.pro /home/sg626/p6260162.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 00:49:49 12 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:49:49 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:49:49 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:49:49 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:49:49 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:49:49 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:49:49 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:49:49 12 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:49:49 12 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:49:49 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:49:49 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:49:49 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:49:49 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:49:49 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:49:49 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:49:49 12 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:49:49 12 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:49:49 12 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:49:49 12 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:49:49 12 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:49:49 12 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:49:49 12 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:49:49 12 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:49:49 12 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 00:49:49 12 Feb 2017 UTC 03:52:47 12 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 617 03:52:47 12 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:55:27 12 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 797 03:55:27 12 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:55:27 12 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:55:27 12 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:55:27 12 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:55:27 12 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170211175526 ] 03:55:27 12 Feb 2017 UTC: INFO: Base.py(1333): PID:805 03:55:27 12 Feb 2017 UTC: INFO: Base.py(1375): Started processing 03:55:27 12 Feb 2017 UTC 03:55:27 12 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:55:27 12 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:55:27 12 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:55:27 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:55:27 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:163 calls_made:1 call_cycle:0 03:55:27 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:55:27 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:163 calls_made:1 call_cycle:0 03:55:27 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:55:27 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:163 calls_made:1 call_cycle:0 03:55:27 12 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:163 calls_made:1 call_cycle:0 2316.2300 -15735.8960 02/12/17 03:50:38 UTC) to sdrifter@soest.hawaii.edu 03:55:28 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:163 calls_made:1 call_cycle:0 03:55:28 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:55:28 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:163 calls_made:1 call_cycle:0 03:55:28 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:55:28 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:163 calls_made:1 call_cycle:0 03:55:28 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:55:28 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:163 calls_made:1 call_cycle:0 03:55:28 12 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:55:28 12 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:55:31 12 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:55:31 12 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:55:31 12 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:55:31 12 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:55:31 12 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:55:31 12 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:55:32 12 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0163lz 03:55:32 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0163lz.x00 03:55:32 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0163lz.x01 03:55:32 12 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0163lz.r in process_file_group 03:55:32 12 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260163.log 03:55:32 12 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:55:32 12 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0163dz 03:55:32 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0163dz.x00 03:55:32 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0163dz.x01 03:55:32 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0163dz.x02 03:55:32 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0163dz.x03 03:55:32 12 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0163dz.r in process_file_group 03:55:32 12 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [163] 03:55:32 12 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [163] 03:55:32 12 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260163) for profiles 03:55:32 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 03:55:32 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/576) 575 576 to QC_BAD because CT out of water 03:55:32 12 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.101m) 03:55:32 12 Feb 2017 UTC: INFO: QC.py(365): Changed (2/576) 3 227 to QC_PROBABLY_BAD because raw temperature spikes 03:55:32 12 Feb 2017 UTC: INFO: QC.py(180): Changed (2/576) 3 227 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 03:55:32 12 Feb 2017 UTC: INFO: QC.py(180): Changed (2/576) 575 576 to QC_BAD because changed raw cond implies changed raw salinity 03:55:32 12 Feb 2017 UTC: INFO: QC.py(365): Changed (2/576) 3 227 to QC_INTERPOLATED because temperature spikes 03:55:32 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/576) 225:229 to QC_BAD because slow apogee CT flow 03:55:32 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/576) 1:6 to QC_BAD because prior to dive start 03:55:32 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/576) 574 to QC_BAD because end of climb 03:55:32 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3343): SUGGESTION: 163 interp_conductivity data_points between 127 131 % 24.7m SUSPECT unresolved strong conductivity anomaly 03:55:32 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/576) 1:6 225:229 574:576 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:55:32 12 Feb 2017 UTC: INFO: QC.py(180): Changed (14/576) 1:6 225:229 574:576 to QC_BAD because changed corrected salin implies changed speed 03:55:33 12 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 03:55:33 12 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 163 interp_salinity data_points in_between 278 330 % suspect thermal-inertia points 312 03:55:33 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.17 cm/s 03:55:33 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.76 cm/s 03:55:33 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:55:33 12 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/576) 123:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:55:33 12 Feb 2017 UTC: INFO: QC.py(180): Changed (1/576) 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:55:33 12 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/576) 123:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 03:55:33 12 Feb 2017 UTC: INFO: QC.py(180): Changed (1/576) 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 03:55:33 12 Feb 2017 UTC: INFO: QC.py(180): Changed (14/576) 1:6 225:229 574:576 to QC_BAD because changed salinity implies changed optode oxygen 03:55:33 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:55:33 12 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:55:33 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 03:55:33 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 163: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.43% reduction 03:55:33 12 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.163 03:55:33 12 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:55:33 12 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:55:33 12 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:55:33 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 03:55:33 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 03:56:44 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 03:56:45 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 03:56:45 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 03:56:58 12 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:56:58 12 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:56:58 12 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:56:58 12 Feb 2017 UTC /home/sg626/p6260163.log /home/sg626/p6260163.eng /home/sg626/p6260163.asc /home/sg626/p6260163.pro /home/sg626/p6260163.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 03:56:58 12 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:56:58 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:56:58 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:56:58 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:56:58 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:56:58 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:56:58 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:56:58 12 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:56:58 12 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:56:58 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:56:58 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:56:58 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:56:58 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:56:58 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:56:58 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:56:58 12 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:56:58 12 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:56:58 12 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:56:58 12 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:56:58 12 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:56:58 12 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:56:58 12 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:56:58 12 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:56:58 12 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 03:56:58 12 Feb 2017 UTC 06:58:57 12 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 5941 06:58:57 12 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:01:35 12 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 6315 07:01:35 12 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:01:35 12 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:01:35 12 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:01:35 12 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:01:35 12 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170211210135 ] 07:01:35 12 Feb 2017 UTC: INFO: Base.py(1333): PID:6322 07:01:35 12 Feb 2017 UTC: INFO: Base.py(1375): Started processing 07:01:35 12 Feb 2017 UTC 07:01:35 12 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:01:36 12 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:01:36 12 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:01:36 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:01:36 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:164 calls_made:1 call_cycle:0 07:01:36 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:01:36 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:164 calls_made:1 call_cycle:0 07:01:36 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:01:36 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:164 calls_made:1 call_cycle:0 07:01:36 12 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:164 calls_made:1 call_cycle:0 2317.4500 -15734.5650 02/12/17 06:57:00 UTC) to sdrifter@soest.hawaii.edu 07:01:36 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:164 calls_made:1 call_cycle:0 07:01:36 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:01:36 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:164 calls_made:1 call_cycle:0 07:01:36 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:01:36 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:164 calls_made:1 call_cycle:0 07:01:36 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:01:36 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:164 calls_made:1 call_cycle:0 07:01:36 12 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:01:36 12 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:01:39 12 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:01:40 12 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:01:40 12 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:01:40 12 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:01:40 12 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:01:40 12 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:01:40 12 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0164lz 07:01:40 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0164lz.x00 07:01:40 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0164lz.x01 07:01:40 12 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0164lz.r in process_file_group 07:01:40 12 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260164.log 07:01:40 12 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:01:40 12 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0164dz 07:01:40 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0164dz.x00 07:01:40 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0164dz.x01 07:01:40 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0164dz.x02 07:01:40 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0164dz.x03 07:01:40 12 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0164dz.r in process_file_group 07:01:40 12 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [164] 07:01:40 12 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [164] 07:01:40 12 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260164) for profiles 07:01:40 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 07:01:41 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/538) 537 538 to QC_BAD because CT out of water 07:01:41 12 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.098m) 07:01:41 12 Feb 2017 UTC: INFO: QC.py(365): Changed (1/538) 224 to QC_PROBABLY_BAD because raw temperature spikes 07:01:41 12 Feb 2017 UTC: INFO: QC.py(408): Changed (2/538) 224 230 to QC_PROBABLY_BAD because raw conductivity spikes 07:01:41 12 Feb 2017 UTC: INFO: QC.py(180): Changed (1/538) 224 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:01:41 12 Feb 2017 UTC: INFO: QC.py(180): Changed (1/538) 230 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 07:01:41 12 Feb 2017 UTC: INFO: QC.py(180): Changed (2/538) 537 538 to QC_BAD because changed raw cond implies changed raw salinity 07:01:41 12 Feb 2017 UTC: INFO: QC.py(365): Changed (1/538) 224 to QC_INTERPOLATED because temperature spikes 07:01:41 12 Feb 2017 UTC: INFO: QC.py(408): Changed (2/538) 224 230 to QC_INTERPOLATED because conductivity spikes 07:01:41 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/538) 228:232 to QC_BAD because slow apogee CT flow 07:01:41 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/538) 1:6 to QC_BAD because prior to dive start 07:01:41 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/538) 1:6 228:232 537 538 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:01:41 12 Feb 2017 UTC: INFO: QC.py(180): Changed (13/538) 1:6 228:232 537 538 to QC_BAD because changed corrected salin implies changed speed 07:01:41 12 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:01:41 12 Feb 2017 UTC: INFO: QC.py(180): Changed (1/538) 224 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 07:01:41 12 Feb 2017 UTC: INFO: QC.py(180): Changed (1/538) 224 to QC_INTERPOLATED because changed corrected temp implies changed speed 07:01:41 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.93 cm/s 07:01:41 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.94 cm/s 07:01:41 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:01:41 12 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (167/538) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:01:41 12 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (167/538) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 07:01:41 12 Feb 2017 UTC: INFO: QC.py(180): Changed (13/538) 1:6 228:232 537 538 to QC_BAD because changed salinity implies changed optode oxygen 07:01:41 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:01:41 12 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:01:41 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 07:01:42 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 164: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.42% reduction 07:01:42 12 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.164 07:01:42 12 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:01:42 12 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:01:42 12 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:01:42 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 07:01:42 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:02:52 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 07:02:53 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:02:53 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:03:06 12 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:03:06 12 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:03:06 12 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:03:06 12 Feb 2017 UTC /home/sg626/p6260164.log /home/sg626/p6260164.eng /home/sg626/p6260164.asc /home/sg626/p6260164.pro /home/sg626/p6260164.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:03:06 12 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:03:06 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:03:06 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:03:06 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:03:06 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:03:06 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:03:06 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:03:06 12 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:03:06 12 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:03:06 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:03:06 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:03:06 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:03:06 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:03:06 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:03:06 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:03:06 12 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:03:06 12 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:03:06 12 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:03:06 12 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:03:06 12 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:03:06 12 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:03:06 12 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:03:06 12 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:03:06 12 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 07:03:06 12 Feb 2017 UTC 10:06:14 12 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 11650 10:06:14 12 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:08:56 12 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 11765 10:08:56 12 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:08:56 12 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:08:56 12 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:08:56 12 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:08:56 12 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170212000856 ] 10:08:56 12 Feb 2017 UTC: INFO: Base.py(1333): PID:11772 10:08:56 12 Feb 2017 UTC: INFO: Base.py(1375): Started processing 10:08:56 12 Feb 2017 UTC 10:08:56 12 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:08:57 12 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:08:57 12 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:08:57 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:08:57 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:165 calls_made:1 call_cycle:0 10:08:57 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:08:57 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:165 calls_made:1 call_cycle:0 10:08:57 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:08:57 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:165 calls_made:1 call_cycle:0 10:08:57 12 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:165 calls_made:1 call_cycle:0 2318.9280 -15732.8960 02/12/17 10:04:17 UTC) to sdrifter@soest.hawaii.edu 10:08:57 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:165 calls_made:1 call_cycle:0 10:08:57 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:08:57 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:165 calls_made:1 call_cycle:0 10:08:57 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:08:57 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:165 calls_made:1 call_cycle:0 10:08:57 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:08:57 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:165 calls_made:1 call_cycle:0 10:08:57 12 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:08:57 12 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:09:00 12 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:09:00 12 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:09:00 12 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:09:00 12 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:09:01 12 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:09:01 12 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:09:01 12 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0165lz 10:09:01 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0165lz.x00 10:09:01 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0165lz.x01 10:09:01 12 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0165lz.r in process_file_group 10:09:01 12 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260165.log 10:09:01 12 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:09:01 12 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0165dz 10:09:01 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0165dz.x00 10:09:01 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0165dz.x01 10:09:01 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0165dz.x02 10:09:01 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0165dz.x03 10:09:01 12 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0165dz.r in process_file_group 10:09:01 12 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [165] 10:09:01 12 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [165] 10:09:01 12 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260165) for profiles 10:09:01 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 10:09:02 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/577) 576 577 to QC_BAD because CT out of water 10:09:02 12 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.113m) 10:09:02 12 Feb 2017 UTC: INFO: QC.py(365): Changed (2/577) 4 226 to QC_PROBABLY_BAD because raw temperature spikes 10:09:02 12 Feb 2017 UTC: INFO: QC.py(377): Changed (1/577) 576 to QC_BAD because raw salinity below bound 10:09:02 12 Feb 2017 UTC: INFO: QC.py(408): Changed (1/577) 226 to QC_PROBABLY_BAD because raw conductivity spikes 10:09:02 12 Feb 2017 UTC: INFO: QC.py(180): Changed (2/577) 4 226 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 10:09:02 12 Feb 2017 UTC: INFO: QC.py(180): Changed (1/577) 577 to QC_BAD because changed raw cond implies changed raw salinity 10:09:02 12 Feb 2017 UTC: INFO: QC.py(365): Changed (2/577) 4 226 to QC_INTERPOLATED because temperature spikes 10:09:02 12 Feb 2017 UTC: INFO: QC.py(377): Changed (1/577) 576 to QC_BAD because salinity below bound 10:09:02 12 Feb 2017 UTC: INFO: QC.py(408): Changed (1/577) 226 to QC_INTERPOLATED because conductivity spikes 10:09:02 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/577) 224:228 to QC_BAD because slow apogee CT flow 10:09:02 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/577) 1:6 to QC_BAD because prior to dive start 10:09:02 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/577) 1:6 224:228 576 577 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:09:02 12 Feb 2017 UTC: INFO: QC.py(180): Changed (13/577) 1:6 224:228 576 577 to QC_BAD because changed corrected salin implies changed speed 10:09:02 12 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 10:09:02 12 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 165 interp_salinity data_points in_between 300 322 % suspect thermal-inertia points 306 307 10:09:02 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.74 cm/s 10:09:02 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.67 cm/s 10:09:02 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:09:02 12 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/577) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:09:02 12 Feb 2017 UTC: INFO: QC.py(180): Changed (2/577) 4 226 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 10:09:02 12 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/577) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 10:09:02 12 Feb 2017 UTC: INFO: QC.py(180): Changed (2/577) 4 226 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 10:09:02 12 Feb 2017 UTC: INFO: QC.py(180): Changed (13/577) 1:6 224:228 576 577 to QC_BAD because changed salinity implies changed optode oxygen 10:09:02 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:09:02 12 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:09:02 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 10:09:03 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 165: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.25% reduction 10:09:03 12 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.165 10:09:03 12 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:09:03 12 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:09:03 12 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:09:03 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 10:09:03 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 10:10:15 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 10:10:16 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 10:10:16 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 10:10:29 12 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:10:29 12 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:10:29 12 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 10:10:29 12 Feb 2017 UTC /home/sg626/p6260165.log /home/sg626/p6260165.eng /home/sg626/p6260165.asc /home/sg626/p6260165.pro /home/sg626/p6260165.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 10:10:29 12 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:10:29 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:10:29 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:10:29 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:10:29 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:10:29 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:10:29 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:10:29 12 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:10:29 12 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:10:29 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:10:29 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:10:29 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:10:29 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:10:29 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:10:29 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:10:29 12 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:10:29 12 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:10:29 12 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:10:29 12 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:10:29 12 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:10:29 12 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:10:29 12 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:10:29 12 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:10:29 12 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 10:10:29 12 Feb 2017 UTC 13:16:49 12 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 17084 13:16:49 12 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:19:26 12 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 17196 13:19:26 12 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:19:26 12 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:19:26 12 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:19:26 12 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:19:26 12 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170212031926 ] 13:19:26 12 Feb 2017 UTC: INFO: Base.py(1333): PID:17203 13:19:26 12 Feb 2017 UTC: INFO: Base.py(1375): Started processing 13:19:26 12 Feb 2017 UTC 13:19:27 12 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:19:27 12 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:19:27 12 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:19:27 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:19:27 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:166 calls_made:1 call_cycle:0 13:19:27 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:19:27 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:166 calls_made:1 call_cycle:0 13:19:27 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:19:27 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:166 calls_made:1 call_cycle:0 13:19:27 12 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:166 calls_made:1 call_cycle:0 2319.5130 -15730.9930 02/12/17 13:14:49 UTC) to sdrifter@soest.hawaii.edu 13:19:27 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:166 calls_made:1 call_cycle:0 13:19:27 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:19:27 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:166 calls_made:1 call_cycle:0 13:19:27 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:19:27 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:166 calls_made:1 call_cycle:0 13:19:27 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:19:27 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:166 calls_made:1 call_cycle:0 13:19:27 12 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:19:27 12 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:19:30 12 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:19:31 12 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:19:31 12 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:19:31 12 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:19:31 12 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:19:31 12 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:19:31 12 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0166lz 13:19:31 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0166lz.x00 13:19:31 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0166lz.x01 13:19:31 12 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0166lz.r in process_file_group 13:19:31 12 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260166.log 13:19:31 12 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:19:31 12 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0166dz 13:19:31 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0166dz.x00 13:19:31 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0166dz.x01 13:19:31 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0166dz.x02 13:19:31 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0166dz.x03 13:19:31 12 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0166dz.r in process_file_group 13:19:32 12 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [166] 13:19:32 12 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [166] 13:19:32 12 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260166) for profiles 13:19:32 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:19:32 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/578) 578 to QC_BAD because CT out of water 13:19:32 12 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.050m) 13:19:32 12 Feb 2017 UTC: INFO: QC.py(365): Changed (7/578) 4 182:185 254 257 to QC_PROBABLY_BAD because raw temperature spikes 13:19:32 12 Feb 2017 UTC: INFO: QC.py(408): Changed (4/578) 182 185 254 257 to QC_PROBABLY_BAD because raw conductivity spikes 13:19:32 12 Feb 2017 UTC: INFO: QC.py(180): Changed (7/578) 4 182:185 254 257 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:19:32 12 Feb 2017 UTC: INFO: QC.py(180): Changed (1/578) 578 to QC_BAD because changed raw cond implies changed raw salinity 13:19:32 12 Feb 2017 UTC: INFO: QC.py(365): Changed (7/578) 4 182:185 254 257 to QC_INTERPOLATED because temperature spikes 13:19:32 12 Feb 2017 UTC: INFO: QC.py(408): Changed (4/578) 182 185 254 257 to QC_INTERPOLATED because conductivity spikes 13:19:32 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/578) 225:229 to QC_BAD because slow apogee CT flow 13:19:32 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/578) 1:6 to QC_BAD because prior to dive start 13:19:32 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/578) 577 to QC_BAD because end of climb 13:19:32 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3343): SUGGESTION: 166 bad_conductivity data_points between 126 321 % uncorrectable 955.7m SUSPECT unresolved strong conductivity anomaly 13:19:32 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/578) 1:6 225:229 577 578 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:19:32 12 Feb 2017 UTC: INFO: QC.py(180): Changed (13/578) 1:6 225:229 577 578 to QC_BAD because changed corrected salin implies changed speed 13:19:32 12 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:19:32 12 Feb 2017 UTC: INFO: QC.py(180): Changed (6/578) 182:185 254 257 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 13:19:32 12 Feb 2017 UTC: INFO: QC.py(180): Changed (6/578) 182:185 254 257 to QC_INTERPOLATED because changed corrected temp implies changed speed 13:19:32 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.23 cm/s 13:19:32 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.92 cm/s 13:19:32 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:19:32 12 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (164/578) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:19:32 12 Feb 2017 UTC: INFO: QC.py(180): Changed (1/578) 4 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:19:32 12 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (164/578) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:19:32 12 Feb 2017 UTC: INFO: QC.py(180): Changed (1/578) 4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:19:32 12 Feb 2017 UTC: INFO: QC.py(180): Changed (13/578) 1:6 225:229 577 578 to QC_BAD because changed salinity implies changed optode oxygen 13:19:32 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:19:32 12 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:19:32 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:19:33 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 166: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.25% reduction 13:19:33 12 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.166 13:19:33 12 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:19:33 12 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:19:33 12 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:19:33 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:19:33 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:20:46 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 13:20:46 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:20:46 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:21:00 12 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:21:00 12 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:21:00 12 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:21:00 12 Feb 2017 UTC /home/sg626/p6260166.log /home/sg626/p6260166.eng /home/sg626/p6260166.asc /home/sg626/p6260166.pro /home/sg626/p6260166.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:21:00 12 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:21:00 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:21:00 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:21:00 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:21:00 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:21:00 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:21:00 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:21:00 12 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:21:00 12 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:21:00 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:21:00 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:21:00 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:21:00 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:21:00 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:21:00 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:21:00 12 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:21:00 12 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:21:00 12 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:21:00 12 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:21:00 12 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:21:00 12 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:21:00 12 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:21:00 12 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:21:00 12 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 13:21:00 12 Feb 2017 UTC 16:20:15 12 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 22428 16:20:15 12 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:22:46 12 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 22542 16:22:46 12 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:22:46 12 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:22:46 12 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:22:46 12 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:22:46 12 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170212062246 ] 16:22:46 12 Feb 2017 UTC: INFO: Base.py(1333): PID:22549 16:22:47 12 Feb 2017 UTC: INFO: Base.py(1375): Started processing 16:22:47 12 Feb 2017 UTC 16:22:47 12 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:22:47 12 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:22:47 12 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:22:47 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:22:47 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:167 calls_made:1 call_cycle:0 16:22:47 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:22:47 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:167 calls_made:1 call_cycle:0 16:22:47 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:22:47 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:167 calls_made:1 call_cycle:0 16:22:47 12 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:167 calls_made:1 call_cycle:0 2319.8910 -15729.7100 02/12/17 16:18:18 UTC) to sdrifter@soest.hawaii.edu 16:22:47 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:167 calls_made:1 call_cycle:0 16:22:47 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:22:47 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:167 calls_made:1 call_cycle:0 16:22:47 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:22:47 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:167 calls_made:1 call_cycle:0 16:22:47 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:22:47 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:167 calls_made:1 call_cycle:0 16:22:47 12 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:22:47 12 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:22:50 12 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:22:51 12 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:22:51 12 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:22:51 12 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:22:51 12 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:22:51 12 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:22:51 12 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0167lz 16:22:51 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0167lz.x00 16:22:51 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0167lz.x01 16:22:51 12 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0167lz.r in process_file_group 16:22:51 12 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260167.log 16:22:51 12 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:22:51 12 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0167dz 16:22:51 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0167dz.x00 16:22:51 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0167dz.x01 16:22:51 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0167dz.x02 16:22:51 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0167dz.x03 16:22:51 12 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0167dz.r in process_file_group 16:22:52 12 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [167] 16:22:52 12 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [167] 16:22:52 12 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260167) for profiles 16:22:52 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:22:52 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/513) 513 to QC_BAD because CT out of water 16:22:52 12 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.075m) 16:22:52 12 Feb 2017 UTC: INFO: QC.py(365): Changed (4/513) 3 186 187 261 to QC_PROBABLY_BAD because raw temperature spikes 16:22:52 12 Feb 2017 UTC: INFO: QC.py(408): Changed (2/513) 186 261 to QC_PROBABLY_BAD because raw conductivity spikes 16:22:52 12 Feb 2017 UTC: INFO: QC.py(180): Changed (4/513) 3 186 187 261 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:22:52 12 Feb 2017 UTC: INFO: QC.py(180): Changed (1/513) 513 to QC_BAD because changed raw cond implies changed raw salinity 16:22:52 12 Feb 2017 UTC: INFO: QC.py(365): Changed (4/513) 3 186 187 261 to QC_INTERPOLATED because temperature spikes 16:22:52 12 Feb 2017 UTC: INFO: QC.py(408): Changed (2/513) 186 261 to QC_INTERPOLATED because conductivity spikes 16:22:52 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/513) 230:234 to QC_BAD because slow apogee CT flow 16:22:52 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/513) 1:6 to QC_BAD because prior to dive start 16:22:52 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/513) 1:6 230:234 513 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:22:52 12 Feb 2017 UTC: INFO: QC.py(180): Changed (12/513) 1:6 230:234 513 to QC_BAD because changed corrected salin implies changed speed 16:22:52 12 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:22:52 12 Feb 2017 UTC: INFO: QC.py(180): Changed (3/513) 186 187 261 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 16:22:52 12 Feb 2017 UTC: INFO: QC.py(180): Changed (3/513) 186 187 261 to QC_INTERPOLATED because changed corrected temp implies changed speed 16:22:52 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.61 cm/s 16:22:52 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.79 cm/s 16:22:52 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:22:52 12 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (163/513) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:22:52 12 Feb 2017 UTC: INFO: QC.py(180): Changed (3/513) 3 186 261 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:22:52 12 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (163/513) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:22:52 12 Feb 2017 UTC: INFO: QC.py(180): Changed (3/513) 3 186 261 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:22:52 12 Feb 2017 UTC: INFO: QC.py(180): Changed (12/513) 1:6 230:234 513 to QC_BAD because changed salinity implies changed optode oxygen 16:22:52 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:22:52 12 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:22:52 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:22:53 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 167: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.34% reduction 16:22:53 12 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.167 16:22:53 12 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:22:53 12 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:22:53 12 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:22:53 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:22:53 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:24:06 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 16:24:07 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:24:07 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:24:20 12 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:24:20 12 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:24:20 12 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:24:20 12 Feb 2017 UTC /home/sg626/p6260167.log /home/sg626/p6260167.eng /home/sg626/p6260167.asc /home/sg626/p6260167.pro /home/sg626/p6260167.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:24:20 12 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:24:20 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:24:20 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:24:20 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:24:20 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:24:20 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:24:20 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:24:20 12 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:24:20 12 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:24:20 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:24:20 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:24:20 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:24:20 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:24:20 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:24:20 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:24:20 12 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:24:20 12 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:24:20 12 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:24:20 12 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:24:20 12 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:24:20 12 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:24:20 12 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:24:20 12 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:24:20 12 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 16:24:20 12 Feb 2017 UTC 19:27:52 12 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 27733 19:27:52 12 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:30:29 12 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 27927 19:30:29 12 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:30:29 12 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:30:29 12 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:30:29 12 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:30:29 12 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170212093029 ] 19:30:29 12 Feb 2017 UTC: INFO: Base.py(1333): PID:27935 19:30:29 12 Feb 2017 UTC: INFO: Base.py(1375): Started processing 19:30:29 12 Feb 2017 UTC 19:30:29 12 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:30:30 12 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:30:30 12 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:30:30 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:30:30 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:168 calls_made:1 call_cycle:0 19:30:30 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:30:30 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:168 calls_made:1 call_cycle:0 19:30:30 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:30:30 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:168 calls_made:1 call_cycle:0 19:30:30 12 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:168 calls_made:1 call_cycle:0 2320.5410 -15728.8960 02/12/17 19:25:37 UTC) to sdrifter@soest.hawaii.edu 19:30:30 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:168 calls_made:1 call_cycle:0 19:30:30 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:30:30 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:168 calls_made:1 call_cycle:0 19:30:30 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:30:30 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:168 calls_made:1 call_cycle:0 19:30:30 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:30:30 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:168 calls_made:1 call_cycle:0 19:30:30 12 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:30:30 12 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:30:33 12 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:30:34 12 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:30:34 12 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:30:34 12 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:30:34 12 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:30:34 12 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:30:34 12 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0168lz 19:30:34 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0168lz.x00 19:30:34 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0168lz.x01 19:30:34 12 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0168lz.r in process_file_group 19:30:34 12 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260168.log 19:30:34 12 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:30:34 12 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0168dz 19:30:34 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0168dz.x00 19:30:34 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0168dz.x01 19:30:34 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0168dz.x02 19:30:34 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0168dz.x03 19:30:34 12 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0168dz.r in process_file_group 19:30:35 12 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [168] 19:30:35 12 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [168] 19:30:35 12 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260168) for profiles 19:30:35 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 19:30:35 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/557) 555 557 to QC_BAD because CT out of water 19:30:35 12 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.085m) 19:30:35 12 Feb 2017 UTC: INFO: QC.py(365): Changed (3/557) 205 248 252 to QC_PROBABLY_BAD because raw temperature spikes 19:30:35 12 Feb 2017 UTC: INFO: QC.py(408): Changed (4/557) 205 221 248 252 to QC_PROBABLY_BAD because raw conductivity spikes 19:30:35 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/557) 556 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 19:30:35 12 Feb 2017 UTC: INFO: QC.py(180): Changed (3/557) 205 248 252 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:30:35 12 Feb 2017 UTC: INFO: QC.py(180): Changed (1/557) 221 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 19:30:35 12 Feb 2017 UTC: INFO: QC.py(180): Changed (3/557) 555:557 to QC_BAD because changed raw cond implies changed raw salinity 19:30:35 12 Feb 2017 UTC: INFO: QC.py(365): Changed (3/557) 205 248 252 to QC_INTERPOLATED because temperature spikes 19:30:35 12 Feb 2017 UTC: INFO: QC.py(408): Changed (4/557) 205 221 248 252 to QC_INTERPOLATED because conductivity spikes 19:30:35 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/557) 556 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 19:30:35 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/557) 220:225 to QC_BAD because slow apogee CT flow 19:30:35 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/557) 1:6 to QC_BAD because prior to dive start 19:30:35 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/557) 1:6 220:225 555:557 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:30:35 12 Feb 2017 UTC: INFO: QC.py(180): Changed (15/557) 1:6 220:225 555:557 to QC_BAD because changed corrected salin implies changed speed 19:30:36 12 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:30:36 12 Feb 2017 UTC: INFO: QC.py(180): Changed (3/557) 205 248 252 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 19:30:36 12 Feb 2017 UTC: INFO: QC.py(180): Changed (3/557) 205 248 252 to QC_INTERPOLATED because changed corrected temp implies changed speed 19:30:36 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.92 cm/s 19:30:36 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.62 cm/s 19:30:36 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:30:36 12 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (164/557) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:30:36 12 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (164/557) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 19:30:36 12 Feb 2017 UTC: INFO: QC.py(180): Changed (15/557) 1:6 220:225 555:557 to QC_BAD because changed salinity implies changed optode oxygen 19:30:36 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:30:36 12 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:30:36 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 19:30:36 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 168: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.69% reduction 19:30:36 12 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.168 19:30:36 12 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:30:36 12 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:30:36 12 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:30:36 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 19:30:36 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 19:31:50 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 19:31:50 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 19:31:50 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 19:32:04 12 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:32:04 12 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:32:04 12 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:32:04 12 Feb 2017 UTC /home/sg626/p6260168.log /home/sg626/p6260168.eng /home/sg626/p6260168.asc /home/sg626/p6260168.pro /home/sg626/p6260168.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 19:32:04 12 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:32:04 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:32:04 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:32:04 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:32:04 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:32:04 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:32:04 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:32:04 12 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:32:04 12 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:32:04 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:32:04 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:32:04 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:32:04 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:32:04 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:32:04 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:32:04 12 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:32:04 12 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:32:04 12 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:32:04 12 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:32:04 12 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:32:04 12 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:32:04 12 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:32:04 12 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:32:04 12 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 19:32:04 12 Feb 2017 UTC 22:34:24 12 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 842 22:34:24 12 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:37:05 12 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 957 22:37:05 12 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:37:05 12 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:37:05 12 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:37:05 12 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:37:05 12 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170212123704 ] 22:37:05 12 Feb 2017 UTC: INFO: Base.py(1333): PID:964 22:37:05 12 Feb 2017 UTC: INFO: Base.py(1375): Started processing 22:37:05 12 Feb 2017 UTC 22:37:05 12 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:37:06 12 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:37:06 12 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:37:06 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:37:06 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:169 calls_made:1 call_cycle:0 22:37:06 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:37:06 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:169 calls_made:1 call_cycle:0 22:37:06 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:37:06 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:169 calls_made:1 call_cycle:0 22:37:06 12 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:169 calls_made:1 call_cycle:0 2321.7140 -15727.9890 02/12/17 22:32:24 UTC) to sdrifter@soest.hawaii.edu 22:37:06 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:169 calls_made:1 call_cycle:0 22:37:06 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:37:06 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:169 calls_made:1 call_cycle:0 22:37:06 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:37:06 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:169 calls_made:1 call_cycle:0 22:37:06 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:37:06 12 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:169 calls_made:1 call_cycle:0 22:37:06 12 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:37:06 12 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:37:09 12 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:37:09 12 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:37:09 12 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:37:09 12 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:37:09 12 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:37:09 12 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:37:10 12 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0169lz 22:37:10 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0169lz.x00 22:37:10 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0169lz.x01 22:37:10 12 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0169lz.r in process_file_group 22:37:10 12 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260169.log 22:37:10 12 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 22:37:10 12 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0169dz 22:37:10 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0169dz.x00 22:37:10 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0169dz.x01 22:37:10 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0169dz.x02 22:37:10 12 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0169dz.x03 22:37:10 12 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0169dz.r in process_file_group 22:37:10 12 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [169] 22:37:10 12 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [169] 22:37:10 12 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260169) for profiles 22:37:10 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 22:37:10 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/568) 567 568 to QC_BAD because CT out of water 22:37:10 12 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.111m) 22:37:10 12 Feb 2017 UTC: INFO: QC.py(365): Changed (10/568) 2 5 170 172 173 179 242 248 249 567 to QC_PROBABLY_BAD because raw temperature spikes 22:37:10 12 Feb 2017 UTC: INFO: QC.py(377): Changed (2/568) 567 568 to QC_BAD because raw salinity below bound 22:37:10 12 Feb 2017 UTC: INFO: QC.py(408): Changed (6/568) 170 172 173 179 248 249 to QC_PROBABLY_BAD because raw conductivity spikes 22:37:10 12 Feb 2017 UTC: INFO: QC.py(180): Changed (9/568) 2 5 170 172 173 179 242 248 249 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 22:37:10 12 Feb 2017 UTC: INFO: QC.py(365): Changed (10/568) 2 5 170 172 173 179 242 248 249 567 to QC_INTERPOLATED because temperature spikes 22:37:10 12 Feb 2017 UTC: INFO: QC.py(377): Changed (2/568) 567 568 to QC_BAD because salinity below bound 22:37:10 12 Feb 2017 UTC: INFO: QC.py(408): Changed (6/568) 170 172 173 179 248 249 to QC_INTERPOLATED because conductivity spikes 22:37:10 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/568) 216:220 to QC_BAD because slow apogee CT flow 22:37:10 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/568) 1:6 to QC_BAD because prior to dive start 22:37:10 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3343): SUGGESTION: 169 bad_conductivity data_points between 117 127 % uncorrectable 61.5m SUSPECT unresolved strong conductivity anomaly 22:37:10 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/568) 1:6 216:220 567 568 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:37:10 12 Feb 2017 UTC: INFO: QC.py(180): Changed (13/568) 1:6 216:220 567 568 to QC_BAD because changed corrected salin implies changed speed 22:37:11 12 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:37:11 12 Feb 2017 UTC: INFO: QC.py(180): Changed (7/568) 170 172 173 179 242 248 249 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 22:37:11 12 Feb 2017 UTC: INFO: QC.py(180): Changed (7/568) 170 172 173 179 242 248 249 to QC_INTERPOLATED because changed corrected temp implies changed speed 22:37:11 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.29 cm/s 22:37:11 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.57 cm/s 22:37:11 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:37:11 12 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/568) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:37:11 12 Feb 2017 UTC: INFO: QC.py(180): Changed (3/568) 2 5 567 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 22:37:11 12 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/568) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 22:37:11 12 Feb 2017 UTC: INFO: QC.py(180): Changed (3/568) 2 5 567 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 22:37:11 12 Feb 2017 UTC: INFO: QC.py(180): Changed (13/568) 1:6 216:220 567 568 to QC_BAD because changed salinity implies changed optode oxygen 22:37:11 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:37:11 12 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 22:37:11 12 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 22:37:11 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 169: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.29% reduction 22:37:12 12 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.169 22:37:12 12 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:37:12 12 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:37:12 12 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:37:12 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 22:37:12 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 22:38:26 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 22:38:26 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 22:38:26 12 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 22:38:40 12 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:38:40 12 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:38:40 12 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:38:40 12 Feb 2017 UTC /home/sg626/p6260169.log /home/sg626/p6260169.eng /home/sg626/p6260169.asc /home/sg626/p6260169.pro /home/sg626/p6260169.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 22:38:40 12 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:38:40 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:38:40 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:38:40 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:38:40 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:38:40 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:38:40 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:38:40 12 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:38:40 12 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:38:40 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:38:40 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:38:40 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:38:40 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:38:40 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:38:40 12 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:38:40 12 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:38:40 12 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:38:40 12 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:38:40 12 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:38:40 12 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:38:40 12 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:38:40 12 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:38:40 12 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:38:40 12 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 22:38:40 12 Feb 2017 UTC 01:40:20 13 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 6173 01:40:20 13 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:42:55 13 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 6294 01:42:55 13 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:42:55 13 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:42:55 13 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:42:55 13 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:42:55 13 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170212154254 ] 01:42:55 13 Feb 2017 UTC: INFO: Base.py(1333): PID:6302 01:42:55 13 Feb 2017 UTC: INFO: Base.py(1375): Started processing 01:42:55 13 Feb 2017 UTC 01:42:55 13 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:42:55 13 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:42:55 13 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:42:55 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:42:55 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:170 calls_made:1 call_cycle:0 01:42:55 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:42:55 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:170 calls_made:1 call_cycle:0 01:42:55 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:42:55 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:170 calls_made:1 call_cycle:0 01:42:56 13 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:170 calls_made:1 call_cycle:0 2322.9940 -15726.4730 02/13/17 01:38:07 UTC) to sdrifter@soest.hawaii.edu 01:42:56 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:170 calls_made:1 call_cycle:0 01:42:56 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:42:56 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:170 calls_made:1 call_cycle:0 01:42:56 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:42:56 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:170 calls_made:1 call_cycle:0 01:42:56 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:42:56 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:170 calls_made:1 call_cycle:0 01:42:56 13 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:42:56 13 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:42:59 13 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:42:59 13 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:42:59 13 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:42:59 13 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:42:59 13 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:42:59 13 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:43:00 13 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0170lz 01:43:00 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0170lz.x00 01:43:00 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0170lz.x01 01:43:00 13 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0170lz.r in process_file_group 01:43:00 13 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260170.log 01:43:00 13 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:43:00 13 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0170dz 01:43:00 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0170dz.x00 01:43:00 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0170dz.x01 01:43:00 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0170dz.x02 01:43:00 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0170dz.x03 01:43:00 13 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0170dz.r in process_file_group 01:43:00 13 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [170] 01:43:00 13 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [170] 01:43:00 13 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260170) for profiles 01:43:00 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:43:00 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/558) 558 to QC_BAD because CT out of water 01:43:00 13 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.007m) 01:43:00 13 Feb 2017 UTC: INFO: QC.py(365): Changed (8/558) 181 183 184 190 196 237 243 245 to QC_PROBABLY_BAD because raw temperature spikes 01:43:00 13 Feb 2017 UTC: INFO: QC.py(408): Changed (7/558) 183 184 190 196 242 243 245 to QC_PROBABLY_BAD because raw conductivity spikes 01:43:00 13 Feb 2017 UTC: INFO: QC.py(180): Changed (8/558) 181 183 184 190 196 237 243 245 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:43:00 13 Feb 2017 UTC: INFO: QC.py(180): Changed (1/558) 242 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 01:43:00 13 Feb 2017 UTC: INFO: QC.py(180): Changed (1/558) 558 to QC_BAD because changed raw cond implies changed raw salinity 01:43:00 13 Feb 2017 UTC: INFO: QC.py(365): Changed (8/558) 181 183 184 190 196 237 243 245 to QC_INTERPOLATED because temperature spikes 01:43:00 13 Feb 2017 UTC: INFO: QC.py(408): Changed (7/558) 183 184 190 196 242 243 245 to QC_INTERPOLATED because conductivity spikes 01:43:00 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/558) 217:221 to QC_BAD because slow apogee CT flow 01:43:00 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/558) 1:6 to QC_BAD because prior to dive start 01:43:00 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/558) 1:6 217:221 558 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:43:00 13 Feb 2017 UTC: INFO: QC.py(180): Changed (12/558) 1:6 217:221 558 to QC_BAD because changed corrected salin implies changed speed 01:43:01 13 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:43:01 13 Feb 2017 UTC: INFO: QC.py(180): Changed (8/558) 181 183 184 190 196 237 243 245 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 01:43:01 13 Feb 2017 UTC: INFO: QC.py(180): Changed (1/558) 242 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 01:43:01 13 Feb 2017 UTC: INFO: QC.py(180): Changed (8/558) 181 183 184 190 196 237 243 245 to QC_INTERPOLATED because changed corrected temp implies changed speed 01:43:01 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.14 cm/s 01:43:01 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.75 cm/s 01:43:01 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:43:01 13 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/558) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:43:01 13 Feb 2017 UTC: INFO: QC.py(180): Changed (2/558) 181 196 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 01:43:01 13 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/558) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 01:43:01 13 Feb 2017 UTC: INFO: QC.py(180): Changed (2/558) 181 196 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 01:43:01 13 Feb 2017 UTC: INFO: QC.py(180): Changed (12/558) 1:6 217:221 558 to QC_BAD because changed salinity implies changed optode oxygen 01:43:01 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:43:01 13 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:43:01 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:43:01 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 170: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.15% reduction 01:43:01 13 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.170 01:43:01 13 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:43:01 13 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:43:01 13 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:43:02 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:43:02 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 01:44:16 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 01:44:17 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 01:44:17 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 01:44:31 13 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:44:31 13 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:44:31 13 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:44:31 13 Feb 2017 UTC /home/sg626/p6260170.log /home/sg626/p6260170.eng /home/sg626/p6260170.asc /home/sg626/p6260170.pro /home/sg626/p6260170.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 01:44:31 13 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:44:31 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:44:31 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:44:31 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:44:31 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:44:31 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:44:31 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:44:31 13 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:44:31 13 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:44:31 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:44:31 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:44:31 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:44:31 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:44:31 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:44:31 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:44:31 13 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:44:31 13 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:44:31 13 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:44:31 13 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:44:31 13 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:44:31 13 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:44:31 13 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:44:31 13 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:44:31 13 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 01:44:31 13 Feb 2017 UTC 04:43:00 13 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 12813 04:43:00 13 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:45:47 13 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 12915 04:45:47 13 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:45:47 13 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:45:47 13 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:45:47 13 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:45:47 13 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170212184546 ] 04:45:47 13 Feb 2017 UTC: INFO: Base.py(1333): PID:12922 04:45:47 13 Feb 2017 UTC: INFO: Base.py(1375): Started processing 04:45:47 13 Feb 2017 UTC 04:45:47 13 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:45:47 13 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:45:47 13 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:45:47 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:45:47 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:171 calls_made:1 call_cycle:0 04:45:47 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:45:47 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:171 calls_made:1 call_cycle:0 04:45:47 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:45:47 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:171 calls_made:1 call_cycle:0 04:45:47 13 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:171 calls_made:1 call_cycle:0 2323.6700 -15725.1150 02/13/17 04:41:00 UTC) to sdrifter@soest.hawaii.edu 04:45:48 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:171 calls_made:1 call_cycle:0 04:45:48 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:45:48 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:171 calls_made:1 call_cycle:0 04:45:48 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:45:48 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:171 calls_made:1 call_cycle:0 04:45:48 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:45:48 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:171 calls_made:1 call_cycle:0 04:45:48 13 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:45:48 13 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:45:51 13 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:45:51 13 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:45:51 13 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:45:51 13 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:45:51 13 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:45:51 13 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:45:52 13 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0171lz 04:45:52 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0171lz.x00 04:45:52 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0171lz.x01 04:45:52 13 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0171lz.r in process_file_group 04:45:52 13 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260171.log 04:45:52 13 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:45:52 13 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0171dz 04:45:52 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0171dz.x00 04:45:52 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0171dz.x01 04:45:52 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0171dz.x02 04:45:52 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0171dz.x03 04:45:52 13 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0171dz.r in process_file_group 04:45:52 13 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [171] 04:45:52 13 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [171] 04:45:52 13 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260171) for profiles 04:45:52 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 04:45:52 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/533) 533 to QC_BAD because CT out of water 04:45:52 13 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.166m) 04:45:52 13 Feb 2017 UTC: INFO: QC.py(365): Changed (13/533) 184 189 191 200 201 209 225 226 230 232 234 235 ... to QC_PROBABLY_BAD because raw temperature spikes 04:45:52 13 Feb 2017 UTC: INFO: QC.py(408): Changed (12/533) 184 189 191 200 201 209 225 230 232 234 235 241 to QC_PROBABLY_BAD because raw conductivity spikes 04:45:52 13 Feb 2017 UTC: INFO: QC.py(180): Changed (13/533) 184 189 191 200 201 209 225 226 230 232 234 235 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:45:52 13 Feb 2017 UTC: INFO: QC.py(180): Changed (1/533) 533 to QC_BAD because changed raw cond implies changed raw salinity 04:45:52 13 Feb 2017 UTC: INFO: QC.py(365): Changed (13/533) 184 189 191 200 201 209 225 226 230 232 234 235 ... to QC_INTERPOLATED because temperature spikes 04:45:52 13 Feb 2017 UTC: INFO: QC.py(408): Changed (12/533) 184 189 191 200 201 209 225 230 232 234 235 241 to QC_INTERPOLATED because conductivity spikes 04:45:52 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/533) 216:220 to QC_BAD because slow apogee CT flow 04:45:52 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/533) 1:6 to QC_BAD because prior to dive start 04:45:52 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/533) 1:6 216:220 533 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:45:52 13 Feb 2017 UTC: INFO: QC.py(180): Changed (12/533) 1:6 216:220 533 to QC_BAD because changed corrected salin implies changed speed 04:45:53 13 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:45:53 13 Feb 2017 UTC: INFO: QC.py(180): Changed (13/533) 184 189 191 200 201 209 225 226 230 232 234 235 ... to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 04:45:53 13 Feb 2017 UTC: INFO: QC.py(180): Changed (13/533) 184 189 191 200 201 209 225 226 230 232 234 235 ... to QC_INTERPOLATED because changed corrected temp implies changed speed 04:45:53 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.87 cm/s 04:45:53 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.86 cm/s 04:45:53 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:45:53 13 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/533) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:45:53 13 Feb 2017 UTC: INFO: QC.py(180): Changed (4/533) 191 201 226 241 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:45:53 13 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/533) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 04:45:53 13 Feb 2017 UTC: INFO: QC.py(180): Changed (4/533) 191 201 226 241 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:45:53 13 Feb 2017 UTC: INFO: QC.py(180): Changed (12/533) 1:6 216:220 533 to QC_BAD because changed salinity implies changed optode oxygen 04:45:53 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:45:53 13 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:45:53 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 04:45:53 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 171: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.25% reduction 04:45:53 13 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.171 04:45:53 13 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:45:53 13 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:45:53 13 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:45:53 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 04:45:53 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 04:47:08 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 04:47:09 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 04:47:09 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 04:47:22 13 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:47:22 13 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:47:22 13 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:47:22 13 Feb 2017 UTC /home/sg626/p6260171.log /home/sg626/p6260171.eng /home/sg626/p6260171.asc /home/sg626/p6260171.pro /home/sg626/p6260171.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 04:47:22 13 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:47:22 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:47:22 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:47:22 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:47:22 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:47:22 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:47:22 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:47:22 13 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:47:22 13 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:47:22 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:47:22 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:47:22 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:47:22 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:47:22 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:47:22 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:47:22 13 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:47:22 13 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:47:22 13 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:47:22 13 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:47:22 13 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:47:22 13 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:47:22 13 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:47:22 13 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:47:22 13 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 04:47:22 13 Feb 2017 UTC 07:49:19 13 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 21843 07:49:19 13 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:51:59 13 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 22098 07:51:59 13 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:51:59 13 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:51:59 13 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:51:59 13 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:51:59 13 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170212215158 ] 07:51:59 13 Feb 2017 UTC: INFO: Base.py(1333): PID:22105 07:51:59 13 Feb 2017 UTC: INFO: Base.py(1375): Started processing 07:51:59 13 Feb 2017 UTC 07:51:59 13 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:51:59 13 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:51:59 13 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:51:59 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:51:59 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:172 calls_made:1 call_cycle:0 07:51:59 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:51:59 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:172 calls_made:1 call_cycle:0 07:51:59 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:51:59 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:172 calls_made:1 call_cycle:0 07:51:59 13 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:172 calls_made:1 call_cycle:0 2324.4730 -15724.1310 02/13/17 07:47:19 UTC) to sdrifter@soest.hawaii.edu 07:52:00 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:172 calls_made:1 call_cycle:0 07:52:00 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:52:00 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:172 calls_made:1 call_cycle:0 07:52:00 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:52:00 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:172 calls_made:1 call_cycle:0 07:52:00 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:52:00 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:172 calls_made:1 call_cycle:0 07:52:00 13 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:52:00 13 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:52:03 13 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:52:03 13 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:52:03 13 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:52:03 13 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:52:03 13 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:52:03 13 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:52:04 13 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0172lz 07:52:04 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0172lz.x00 07:52:04 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0172lz.x01 07:52:04 13 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0172lz.r in process_file_group 07:52:04 13 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260172.log 07:52:04 13 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:52:04 13 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0172dz 07:52:04 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0172dz.x00 07:52:04 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0172dz.x01 07:52:04 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0172dz.x02 07:52:04 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0172dz.x03 07:52:04 13 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0172dz.r in process_file_group 07:52:04 13 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [172] 07:52:04 13 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [172] 07:52:04 13 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260172) for profiles 07:52:04 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 07:52:04 13 Feb 2017 UTC: INFO: QC.py(365): Changed (3/567) 2 3 218 to QC_PROBABLY_BAD because raw temperature spikes 07:52:04 13 Feb 2017 UTC: INFO: QC.py(408): Changed (1/567) 218 to QC_PROBABLY_BAD because raw conductivity spikes 07:52:04 13 Feb 2017 UTC: INFO: QC.py(180): Changed (3/567) 2 3 218 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:52:04 13 Feb 2017 UTC: INFO: QC.py(365): Changed (3/567) 2 3 218 to QC_INTERPOLATED because temperature spikes 07:52:04 13 Feb 2017 UTC: INFO: QC.py(408): Changed (1/567) 218 to QC_INTERPOLATED because conductivity spikes 07:52:04 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/567) 216:220 to QC_BAD because slow apogee CT flow 07:52:04 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/567) 1:6 to QC_BAD because prior to dive start 07:52:04 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/567) 566 567 to QC_BAD because end of climb 07:52:04 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/567) 1:6 216:220 566 567 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:52:04 13 Feb 2017 UTC: INFO: QC.py(180): Changed (13/567) 1:6 216:220 566 567 to QC_BAD because changed corrected salin implies changed speed 07:52:05 13 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:52:05 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.53 cm/s 07:52:05 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.87 cm/s 07:52:05 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:52:05 13 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/567) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:52:05 13 Feb 2017 UTC: INFO: QC.py(180): Changed (2/567) 2 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:52:05 13 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/567) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 07:52:05 13 Feb 2017 UTC: INFO: QC.py(180): Changed (2/567) 2 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:52:05 13 Feb 2017 UTC: INFO: QC.py(180): Changed (13/567) 1:6 216:220 566 567 to QC_BAD because changed salinity implies changed optode oxygen 07:52:05 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:52:05 13 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:52:05 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 07:52:05 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 172: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.29% reduction 07:52:05 13 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.172 07:52:05 13 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:52:05 13 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:52:05 13 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:52:05 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 07:52:05 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:53:21 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 07:53:22 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:53:22 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:53:36 13 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:53:36 13 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:53:36 13 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:53:36 13 Feb 2017 UTC /home/sg626/p6260172.log /home/sg626/p6260172.eng /home/sg626/p6260172.asc /home/sg626/p6260172.pro /home/sg626/p6260172.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:53:36 13 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:53:36 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:53:36 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:53:36 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:53:36 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:53:36 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:53:36 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:53:36 13 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:53:36 13 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:53:36 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:53:36 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:53:36 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:53:36 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:53:36 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:53:36 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:53:36 13 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:53:36 13 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:53:36 13 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:53:36 13 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:53:36 13 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:53:36 13 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:53:36 13 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:53:36 13 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:53:36 13 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 07:53:36 13 Feb 2017 UTC 10:56:59 13 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 28989 10:57:00 13 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:59:59 13 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 29114 10:59:59 13 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:59:59 13 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:59:59 13 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:59:59 13 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:59:59 13 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170213005959 ] 10:59:59 13 Feb 2017 UTC: INFO: Base.py(1333): PID:29121 10:59:59 13 Feb 2017 UTC: INFO: Base.py(1375): Started processing 10:59:59 13 Feb 2017 UTC 10:59:59 13 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 11:00:00 13 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 11:00:00 13 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:00:00 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:00:00 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:173 calls_made:1 call_cycle:0 11:00:00 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:00:00 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:173 calls_made:1 call_cycle:0 11:00:00 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:00:00 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:173 calls_made:1 call_cycle:0 11:00:00 13 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:173 calls_made:1 call_cycle:0 2325.6070 -15722.8400 02/13/17 10:55:00 UTC) to sdrifter@soest.hawaii.edu 11:00:00 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:173 calls_made:1 call_cycle:0 11:00:00 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:00:00 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:173 calls_made:1 call_cycle:0 11:00:00 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:00:00 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:173 calls_made:1 call_cycle:0 11:00:00 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:00:00 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:173 calls_made:1 call_cycle:0 11:00:00 13 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:00:00 13 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:00:04 13 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:00:04 13 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:00:04 13 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 11:00:04 13 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:00:04 13 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:00:04 13 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 11:00:05 13 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0173lz 11:00:05 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0173lz.x00 11:00:05 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0173lz.x01 11:00:05 13 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0173lz.r in process_file_group 11:00:05 13 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260173.log 11:00:05 13 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 11:00:05 13 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0173dz 11:00:05 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0173dz.x00 11:00:05 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0173dz.x01 11:00:05 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0173dz.x02 11:00:05 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0173dz.x03 11:00:05 13 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0173dz.r in process_file_group 11:00:05 13 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [173] 11:00:05 13 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [173] 11:00:05 13 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260173) for profiles 11:00:05 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 11:00:05 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/549) 548 549 to QC_BAD because CT out of water 11:00:05 13 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.111m) 11:00:05 13 Feb 2017 UTC: INFO: QC.py(365): Changed (3/549) 2 4 223 to QC_PROBABLY_BAD because raw temperature spikes 11:00:05 13 Feb 2017 UTC: INFO: QC.py(377): Changed (1/549) 549 to QC_BAD because raw salinity below bound 11:00:05 13 Feb 2017 UTC: INFO: QC.py(180): Changed (3/549) 2 4 223 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 11:00:05 13 Feb 2017 UTC: INFO: QC.py(180): Changed (1/549) 548 to QC_BAD because changed raw cond implies changed raw salinity 11:00:05 13 Feb 2017 UTC: INFO: QC.py(365): Changed (3/549) 2 4 223 to QC_INTERPOLATED because temperature spikes 11:00:05 13 Feb 2017 UTC: INFO: QC.py(377): Changed (1/549) 549 to QC_BAD because salinity below bound 11:00:05 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/549) 221:225 to QC_BAD because slow apogee CT flow 11:00:05 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/549) 1:6 to QC_BAD because prior to dive start 11:00:05 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/549) 1:6 221:225 548 549 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 11:00:05 13 Feb 2017 UTC: INFO: QC.py(180): Changed (13/549) 1:6 221:225 548 549 to QC_BAD because changed corrected salin implies changed speed 11:00:06 13 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 11:00:06 13 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 173 interp_salinity data_points in_between 328 337 % suspect thermal-inertia points 335 336 11:00:06 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.35 cm/s 11:00:06 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.88 cm/s 11:00:06 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 11:00:06 13 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (163/549) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 11:00:06 13 Feb 2017 UTC: INFO: QC.py(180): Changed (2/549) 2 4 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 11:00:06 13 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (163/549) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 11:00:06 13 Feb 2017 UTC: INFO: QC.py(180): Changed (2/549) 2 4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 11:00:06 13 Feb 2017 UTC: INFO: QC.py(180): Changed (13/549) 1:6 221:225 548 549 to QC_BAD because changed salinity implies changed optode oxygen 11:00:06 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 11:00:06 13 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 11:00:06 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 11:00:06 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 173: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.37% reduction 11:00:06 13 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.173 11:00:06 13 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:00:06 13 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:00:06 13 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:00:06 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 11:00:06 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 11:01:23 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 11:01:24 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 11:01:24 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 11:01:37 13 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:01:37 13 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:01:37 13 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:01:37 13 Feb 2017 UTC /home/sg626/p6260173.log /home/sg626/p6260173.eng /home/sg626/p6260173.asc /home/sg626/p6260173.pro /home/sg626/p6260173.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 11:01:37 13 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:01:37 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:01:37 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:01:37 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:01:37 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:01:37 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:01:37 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:01:37 13 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:01:37 13 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:01:37 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:01:37 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:01:37 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:01:37 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:01:37 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:01:37 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:01:37 13 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:01:37 13 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 11:01:37 13 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 11:01:37 13 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 11:01:37 13 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 11:01:37 13 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:01:37 13 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:01:37 13 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:01:37 13 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 11:01:37 13 Feb 2017 UTC 14:03:33 13 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 2512 14:03:33 13 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:06:20 13 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 2626 14:06:20 13 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:06:20 13 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 14:06:20 13 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 14:06:20 13 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:06:20 13 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170213040620 ] 14:06:20 13 Feb 2017 UTC: INFO: Base.py(1333): PID:2633 14:06:20 13 Feb 2017 UTC: INFO: Base.py(1375): Started processing 14:06:20 13 Feb 2017 UTC 14:06:20 13 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 14:06:21 13 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 14:06:21 13 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:06:21 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:06:21 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:174 calls_made:1 call_cycle:0 14:06:21 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:06:21 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:174 calls_made:1 call_cycle:0 14:06:21 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:06:21 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:174 calls_made:1 call_cycle:0 14:06:21 13 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:174 calls_made:1 call_cycle:0 2326.5500 -15721.4150 02/13/17 14:01:31 UTC) to sdrifter@soest.hawaii.edu 14:06:21 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:174 calls_made:1 call_cycle:0 14:06:21 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:06:21 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:174 calls_made:1 call_cycle:0 14:06:21 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:06:21 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:174 calls_made:1 call_cycle:0 14:06:21 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:06:21 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:174 calls_made:1 call_cycle:0 14:06:21 13 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:06:21 13 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:06:24 13 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:06:25 13 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:06:25 13 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 14:06:25 13 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:06:25 13 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:06:25 13 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 14:06:25 13 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0174lz 14:06:25 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0174lz.x00 14:06:25 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0174lz.x01 14:06:25 13 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0174lz.r in process_file_group 14:06:25 13 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260174.log 14:06:25 13 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 14:06:25 13 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0174dz 14:06:25 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0174dz.x00 14:06:25 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0174dz.x01 14:06:25 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0174dz.x02 14:06:25 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0174dz.x03 14:06:25 13 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0174dz.r in process_file_group 14:06:26 13 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [174] 14:06:26 13 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [174] 14:06:26 13 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260174) for profiles 14:06:26 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 14:06:26 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/565) 564 565 to QC_BAD because CT out of water 14:06:26 13 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.095m) 14:06:26 13 Feb 2017 UTC: INFO: QC.py(365): Changed (4/565) 2:4 564 to QC_PROBABLY_BAD because raw temperature spikes 14:06:26 13 Feb 2017 UTC: INFO: QC.py(377): Changed (1/565) 564 to QC_BAD because raw salinity below bound 14:06:26 13 Feb 2017 UTC: INFO: QC.py(180): Changed (3/565) 2:4 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:06:26 13 Feb 2017 UTC: INFO: QC.py(180): Changed (1/565) 565 to QC_BAD because changed raw cond implies changed raw salinity 14:06:26 13 Feb 2017 UTC: INFO: QC.py(365): Changed (4/565) 2:4 564 to QC_INTERPOLATED because temperature spikes 14:06:26 13 Feb 2017 UTC: INFO: QC.py(377): Changed (1/565) 564 to QC_BAD because salinity below bound 14:06:26 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/565) 209:213 to QC_BAD because slow apogee CT flow 14:06:26 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/565) 1:6 to QC_BAD because prior to dive start 14:06:26 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/565) 1:6 209:213 564 565 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:06:26 13 Feb 2017 UTC: INFO: QC.py(180): Changed (13/565) 1:6 209:213 564 565 to QC_BAD because changed corrected salin implies changed speed 14:06:26 13 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:06:26 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.24 cm/s 14:06:26 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.77 cm/s 14:06:26 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:06:26 13 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (158/565) 112:115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:06:26 13 Feb 2017 UTC: INFO: QC.py(180): Changed (4/565) 2:4 564 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 14:06:26 13 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (158/565) 112:115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 14:06:26 13 Feb 2017 UTC: INFO: QC.py(180): Changed (4/565) 2:4 564 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 14:06:26 13 Feb 2017 UTC: INFO: QC.py(180): Changed (13/565) 1:6 209:213 564 565 to QC_BAD because changed salinity implies changed optode oxygen 14:06:26 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:06:26 13 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:06:26 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 14:06:27 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 174: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.30% reduction 14:06:27 13 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.174 14:06:27 13 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:06:27 13 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:06:27 13 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:06:27 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 14:06:27 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 14:07:44 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 14:07:45 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 14:07:45 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 14:07:58 13 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:07:58 13 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:07:58 13 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:07:58 13 Feb 2017 UTC /home/sg626/p6260174.log /home/sg626/p6260174.eng /home/sg626/p6260174.asc /home/sg626/p6260174.pro /home/sg626/p6260174.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 14:07:58 13 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:07:58 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:07:58 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:07:58 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:07:58 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:07:58 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:07:58 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:07:58 13 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:07:58 13 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:07:58 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:07:58 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:07:58 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:07:58 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:07:58 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:07:58 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:07:58 13 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:07:58 13 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:07:58 13 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:07:58 13 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:07:58 13 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:07:58 13 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:07:58 13 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:07:58 13 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:07:58 13 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 14:07:58 13 Feb 2017 UTC 17:14:01 13 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 7555 17:14:01 13 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:16:36 13 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 7652 17:16:36 13 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:16:36 13 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:16:36 13 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:16:36 13 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:16:36 13 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170213071636 ] 17:16:36 13 Feb 2017 UTC: INFO: Base.py(1333): PID:7659 17:16:36 13 Feb 2017 UTC: INFO: Base.py(1375): Started processing 17:16:36 13 Feb 2017 UTC 17:16:36 13 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:16:37 13 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:16:37 13 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:16:37 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:16:37 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:175 calls_made:1 call_cycle:0 17:16:37 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:16:37 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:175 calls_made:1 call_cycle:0 17:16:37 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:16:37 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:175 calls_made:1 call_cycle:0 17:16:37 13 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:175 calls_made:1 call_cycle:0 2327.3720 -15720.1300 02/13/17 17:12:00 UTC) to sdrifter@soest.hawaii.edu 17:16:37 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:175 calls_made:1 call_cycle:0 17:16:37 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:16:37 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:175 calls_made:1 call_cycle:0 17:16:37 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:16:37 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:175 calls_made:1 call_cycle:0 17:16:37 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:16:37 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:175 calls_made:1 call_cycle:0 17:16:37 13 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:16:37 13 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:16:40 13 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:16:41 13 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:16:41 13 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:16:41 13 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:16:41 13 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:16:41 13 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:16:41 13 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0175lz 17:16:41 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0175lz.x00 17:16:41 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0175lz.x01 17:16:41 13 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0175lz.r in process_file_group 17:16:41 13 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260175.log 17:16:41 13 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:16:41 13 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0175dz 17:16:41 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0175dz.x00 17:16:41 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0175dz.x01 17:16:41 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0175dz.x02 17:16:41 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0175dz.x03 17:16:41 13 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0175dz.r in process_file_group 17:16:42 13 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [175] 17:16:42 13 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [175] 17:16:42 13 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260175) for profiles 17:16:42 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:16:42 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/562) 562 to QC_BAD because CT out of water 17:16:42 13 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.056m) 17:16:42 13 Feb 2017 UTC: INFO: QC.py(365): Changed (3/562) 2 222 229 to QC_PROBABLY_BAD because raw temperature spikes 17:16:42 13 Feb 2017 UTC: INFO: QC.py(377): Changed (1/562) 562 to QC_BAD because raw salinity below bound 17:16:42 13 Feb 2017 UTC: INFO: QC.py(408): Changed (2/562) 222 229 to QC_PROBABLY_BAD because raw conductivity spikes 17:16:42 13 Feb 2017 UTC: INFO: QC.py(180): Changed (3/562) 2 222 229 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:16:42 13 Feb 2017 UTC: INFO: QC.py(365): Changed (3/562) 2 222 229 to QC_INTERPOLATED because temperature spikes 17:16:42 13 Feb 2017 UTC: INFO: QC.py(377): Changed (1/562) 562 to QC_BAD because salinity below bound 17:16:42 13 Feb 2017 UTC: INFO: QC.py(408): Changed (2/562) 222 229 to QC_INTERPOLATED because conductivity spikes 17:16:42 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/562) 220:224 to QC_BAD because slow apogee CT flow 17:16:42 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/562) 1:6 to QC_BAD because prior to dive start 17:16:42 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/562) 561 to QC_BAD because end of climb 17:16:42 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/562) 1:6 220:224 561 562 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:16:42 13 Feb 2017 UTC: INFO: QC.py(180): Changed (13/562) 1:6 220:224 561 562 to QC_BAD because changed corrected salin implies changed speed 17:16:42 13 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:16:42 13 Feb 2017 UTC: INFO: QC.py(180): Changed (1/562) 229 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 17:16:42 13 Feb 2017 UTC: INFO: QC.py(180): Changed (1/562) 229 to QC_INTERPOLATED because changed corrected temp implies changed speed 17:16:42 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.77 cm/s 17:16:42 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.70 cm/s 17:16:42 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:16:42 13 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (167/562) 114 115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:16:42 13 Feb 2017 UTC: INFO: QC.py(180): Changed (1/562) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:16:42 13 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (167/562) 114 115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:16:42 13 Feb 2017 UTC: INFO: QC.py(180): Changed (1/562) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:16:42 13 Feb 2017 UTC: INFO: QC.py(180): Changed (13/562) 1:6 220:224 561 562 to QC_BAD because changed salinity implies changed optode oxygen 17:16:42 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:16:42 13 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 17:16:42 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:16:42 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:16:42 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:16:42 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:16:42 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:16:42 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:16:42 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:16:42 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:16:42 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:16:42 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:16:42 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:16:42 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:16:42 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:16:42 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:16:42 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:16:42 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:16:42 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:16:42 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:16:42 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:16:42 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:16:42 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:16:42 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:16:42 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:16:42 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:16:42 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:16:43 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:16:43 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:16:43 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:16:43 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:16:43 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:16:43 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:16:43 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:16:43 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 175: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.31% reduction 17:16:43 13 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.175 17:16:43 13 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:16:43 13 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:16:43 13 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:16:43 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:16:43 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:17:59 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 17:18:00 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:18:00 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:18:14 13 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:18:14 13 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:18:14 13 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:18:14 13 Feb 2017 UTC /home/sg626/p6260175.log /home/sg626/p6260175.eng /home/sg626/p6260175.asc /home/sg626/p6260175.pro /home/sg626/p6260175.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:18:14 13 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:18:14 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:18:14 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:18:14 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:18:14 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:18:14 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:18:14 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:18:14 13 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:18:14 13 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:18:14 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:18:14 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:18:14 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:18:14 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:18:14 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:18:14 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:18:14 13 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:18:14 13 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:18:14 13 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:18:14 13 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:18:14 13 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:18:14 13 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:18:14 13 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:18:14 13 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:18:14 13 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 17:18:14 13 Feb 2017 UTC 20:19:08 13 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 12802 20:19:08 13 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:21:43 13 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 12992 20:21:43 13 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:21:43 13 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:21:43 13 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:21:43 13 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:21:43 13 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170213102143 ] 20:21:43 13 Feb 2017 UTC: INFO: Base.py(1333): PID:12999 20:21:43 13 Feb 2017 UTC: INFO: Base.py(1375): Started processing 20:21:43 13 Feb 2017 UTC 20:21:43 13 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:21:44 13 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:21:44 13 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:21:44 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:21:44 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:176 calls_made:1 call_cycle:0 20:21:44 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:21:44 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:176 calls_made:1 call_cycle:0 20:21:44 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:21:44 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:176 calls_made:1 call_cycle:0 20:21:44 13 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:176 calls_made:1 call_cycle:0 2328.2740 -15719.5660 02/13/17 20:17:14 UTC) to sdrifter@soest.hawaii.edu 20:21:44 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:176 calls_made:1 call_cycle:0 20:21:44 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:21:44 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:176 calls_made:1 call_cycle:0 20:21:44 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:21:44 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:176 calls_made:1 call_cycle:0 20:21:44 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:21:44 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:176 calls_made:1 call_cycle:0 20:21:44 13 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:21:44 13 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:21:47 13 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:21:48 13 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:21:48 13 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:21:48 13 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:21:48 13 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:21:48 13 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:21:48 13 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0176lz 20:21:48 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0176lz.x00 20:21:48 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0176lz.x01 20:21:48 13 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0176lz.r in process_file_group 20:21:48 13 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260176.log 20:21:48 13 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:21:48 13 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0176dz 20:21:48 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0176dz.x00 20:21:48 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0176dz.x01 20:21:48 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0176dz.x02 20:21:48 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0176dz.x03 20:21:48 13 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0176dz.r in process_file_group 20:21:49 13 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [176] 20:21:49 13 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [176] 20:21:49 13 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260176) for profiles 20:21:49 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 20:21:49 13 Feb 2017 UTC: INFO: QC.py(365): Changed (6/522) 202 207:209 217 223 to QC_PROBABLY_BAD because raw temperature spikes 20:21:49 13 Feb 2017 UTC: INFO: QC.py(408): Changed (3/522) 202 207 217 to QC_PROBABLY_BAD because raw conductivity spikes 20:21:49 13 Feb 2017 UTC: INFO: QC.py(180): Changed (6/522) 202 207:209 217 223 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 20:21:49 13 Feb 2017 UTC: INFO: QC.py(365): Changed (6/522) 202 207:209 217 223 to QC_INTERPOLATED because temperature spikes 20:21:49 13 Feb 2017 UTC: INFO: QC.py(408): Changed (3/522) 202 207 217 to QC_INTERPOLATED because conductivity spikes 20:21:49 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/522) 215:219 to QC_BAD because slow apogee CT flow 20:21:49 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/522) 1:6 to QC_BAD because prior to dive start 20:21:49 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/522) 1:6 215:219 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 20:21:49 13 Feb 2017 UTC: INFO: QC.py(180): Changed (11/522) 1:6 215:219 to QC_BAD because changed corrected salin implies changed speed 20:21:49 13 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 20:21:49 13 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 176 interp_salinity data_points in_between 338 346 % suspect thermal-inertia points 341:343 20:21:49 13 Feb 2017 UTC: INFO: QC.py(180): Changed (5/522) 202 207:209 223 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 20:21:49 13 Feb 2017 UTC: INFO: QC.py(180): Changed (5/522) 202 207:209 223 to QC_INTERPOLATED because changed corrected temp implies changed speed 20:21:49 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.71 cm/s 20:21:49 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.18 cm/s 20:21:49 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 20:21:49 13 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (164/522) 114 115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 20:21:49 13 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (164/522) 114 115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 20:21:49 13 Feb 2017 UTC: INFO: QC.py(180): Changed (11/522) 1:6 215:219 to QC_BAD because changed salinity implies changed optode oxygen 20:21:49 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 20:21:49 13 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 20:21:49 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 20:21:50 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 20:21:50 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 176: Data set size for profile, binned and kkyy files reduced by 11 points, a 2.11% reduction 20:21:50 13 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.176 20:21:50 13 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:21:50 13 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:21:50 13 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:21:50 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 20:21:50 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 20:23:07 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 20:23:08 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 20:23:08 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 20:23:22 13 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:23:22 13 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:23:22 13 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:23:22 13 Feb 2017 UTC /home/sg626/p6260176.log /home/sg626/p6260176.eng /home/sg626/p6260176.asc /home/sg626/p6260176.pro /home/sg626/p6260176.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 20:23:22 13 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:23:22 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:23:22 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:23:22 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:23:22 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:23:22 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:23:22 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:23:22 13 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:23:22 13 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:23:22 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:23:22 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:23:22 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:23:22 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:23:22 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:23:22 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:23:22 13 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:23:22 13 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:23:22 13 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:23:22 13 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:23:22 13 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:23:22 13 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:23:22 13 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:23:22 13 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:23:22 13 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 20:23:22 13 Feb 2017 UTC 23:31:46 13 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 18525 23:31:46 13 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 23:34:26 13 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 18643 23:34:26 13 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:34:26 13 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:34:26 13 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:34:26 13 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:34:26 13 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170213133425 ] 23:34:26 13 Feb 2017 UTC: INFO: Base.py(1333): PID:18650 23:34:26 13 Feb 2017 UTC: INFO: Base.py(1375): Started processing 23:34:26 13 Feb 2017 UTC 23:34:26 13 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:34:26 13 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:34:26 13 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:34:26 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:34:26 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:177 calls_made:2 call_cycle:0 23:34:26 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:34:26 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:177 calls_made:2 call_cycle:0 23:34:26 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:34:26 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:177 calls_made:2 call_cycle:0 23:34:26 13 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:177 calls_made:2 call_cycle:0 2329.2600 -15719.3830 02/13/17 23:27:18 UTC) to sdrifter@soest.hawaii.edu 23:34:26 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:177 calls_made:2 call_cycle:0 23:34:26 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:34:26 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:177 calls_made:2 call_cycle:0 23:34:26 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:34:26 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:177 calls_made:2 call_cycle:0 23:34:26 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:34:26 13 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:177 calls_made:2 call_cycle:0 23:34:26 13 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:34:26 13 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:34:30 13 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:34:30 13 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:34:30 13 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:34:30 13 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:34:30 13 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:34:30 13 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:34:31 13 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0177lz 23:34:31 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0177lz.x00 23:34:31 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0177lz.x01 23:34:31 13 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0177lz.r in process_file_group 23:34:31 13 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260177.log 23:34:31 13 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:34:31 13 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0177dz 23:34:31 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0177dz.x00 23:34:31 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0177dz.x01 23:34:31 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0177dz.x02 23:34:31 13 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0177dz.x03 23:34:31 13 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0177dz.r in process_file_group 23:34:31 13 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [177] 23:34:31 13 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [177] 23:34:31 13 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260177) for profiles 23:34:31 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 23:34:31 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/551) 551 to QC_BAD because CT out of water 23:34:31 13 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.078m) 23:34:31 13 Feb 2017 UTC: INFO: QC.py(365): Changed (7/551) 204 212 215 217 218 221 223 to QC_PROBABLY_BAD because raw temperature spikes 23:34:31 13 Feb 2017 UTC: INFO: QC.py(377): Changed (1/551) 551 to QC_BAD because raw salinity below bound 23:34:31 13 Feb 2017 UTC: INFO: QC.py(408): Changed (6/551) 203 204 212 215 217 221 to QC_PROBABLY_BAD because raw conductivity spikes 23:34:31 13 Feb 2017 UTC: INFO: QC.py(180): Changed (7/551) 204 212 215 217 218 221 223 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 23:34:31 13 Feb 2017 UTC: INFO: QC.py(180): Changed (1/551) 203 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 23:34:31 13 Feb 2017 UTC: INFO: QC.py(365): Changed (7/551) 204 212 215 217 218 221 223 to QC_INTERPOLATED because temperature spikes 23:34:31 13 Feb 2017 UTC: INFO: QC.py(377): Changed (1/551) 551 to QC_BAD because salinity below bound 23:34:31 13 Feb 2017 UTC: INFO: QC.py(408): Changed (6/551) 203 204 212 215 217 221 to QC_INTERPOLATED because conductivity spikes 23:34:31 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/551) 213:217 to QC_BAD because slow apogee CT flow 23:34:31 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/551) 1:6 to QC_BAD because prior to dive start 23:34:31 13 Feb 2017 UTC: INFO: QC.py(488): Changed (1/551) 212 to QC_PROBABLY_BAD because bad interpolation anchors 23:34:31 13 Feb 2017 UTC: INFO: QC.py(489): SUGGESTION: 177 bad_conductivity data_points in_between 210 212 % bad interpolation anchors 23:34:31 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/551) 1:6 213:217 551 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 23:34:31 13 Feb 2017 UTC: INFO: QC.py(180): Changed (12/551) 1:6 213:217 551 to QC_BAD because changed corrected salin implies changed speed 23:34:32 13 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 23:34:32 13 Feb 2017 UTC: INFO: QC.py(180): Changed (5/551) 204 212 218 221 223 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 23:34:32 13 Feb 2017 UTC: INFO: QC.py(180): Changed (1/551) 212 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 23:34:32 13 Feb 2017 UTC: INFO: QC.py(180): Changed (1/551) 203 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 23:34:32 13 Feb 2017 UTC: INFO: QC.py(180): Changed (5/551) 204 212 218 221 223 to QC_INTERPOLATED because changed corrected temp implies changed speed 23:34:32 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.85 cm/s 23:34:32 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.98 cm/s 23:34:32 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 23:34:32 13 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (166/551) 114 115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 23:34:32 13 Feb 2017 UTC: INFO: QC.py(180): Changed (1/551) 221 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 23:34:32 13 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (166/551) 114 115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 23:34:32 13 Feb 2017 UTC: INFO: QC.py(180): Changed (1/551) 221 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 23:34:32 13 Feb 2017 UTC: INFO: QC.py(180): Changed (12/551) 1:6 213:217 551 to QC_BAD because changed salinity implies changed optode oxygen 23:34:32 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 23:34:32 13 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 23:34:32 13 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 23:34:32 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 177: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.18% reduction 23:34:32 13 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.177 23:34:32 13 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:34:32 13 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:34:32 13 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:34:32 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 23:34:32 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 23:35:50 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 23:35:51 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 23:35:51 13 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 23:36:05 13 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:36:05 13 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:36:05 13 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:36:05 13 Feb 2017 UTC /home/sg626/p6260177.log /home/sg626/p6260177.eng /home/sg626/p6260177.asc /home/sg626/p6260177.pro /home/sg626/p6260177.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 23:36:05 13 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:36:05 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:36:05 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:36:05 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:36:05 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:36:05 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:36:05 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:36:05 13 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:36:05 13 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:36:05 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:36:05 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:36:05 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:36:05 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:36:05 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:36:05 13 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:36:05 13 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:36:05 13 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:36:05 13 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:36:05 13 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:36:05 13 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:36:05 13 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:36:05 13 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:36:05 13 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:36:05 13 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 23:36:05 13 Feb 2017 UTC 02:40:30 14 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 25274 02:40:30 14 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:43:13 14 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 25389 02:43:13 14 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:43:13 14 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:43:13 14 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:43:13 14 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:43:13 14 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170213164312 ] 02:43:13 14 Feb 2017 UTC: INFO: Base.py(1333): PID:25397 02:43:13 14 Feb 2017 UTC: INFO: Base.py(1375): Started processing 02:43:13 14 Feb 2017 UTC 02:43:13 14 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:43:13 14 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:43:13 14 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:43:13 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:43:13 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:178 calls_made:1 call_cycle:0 02:43:13 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:43:13 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:178 calls_made:1 call_cycle:0 02:43:13 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:43:13 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:178 calls_made:1 call_cycle:0 02:43:13 14 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:178 calls_made:1 call_cycle:0 2330.0720 -15719.1160 02/14/17 02:38:31 UTC) to sdrifter@soest.hawaii.edu 02:43:13 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:178 calls_made:1 call_cycle:0 02:43:13 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:43:13 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:178 calls_made:1 call_cycle:0 02:43:13 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:43:13 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:178 calls_made:1 call_cycle:0 02:43:13 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:43:13 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:178 calls_made:1 call_cycle:0 02:43:13 14 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:43:13 14 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:43:17 14 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:43:17 14 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:43:17 14 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:43:17 14 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:43:17 14 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:43:17 14 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:43:18 14 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0178lz 02:43:18 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0178lz.x00 02:43:18 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0178lz.x01 02:43:18 14 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0178lz.r in process_file_group 02:43:18 14 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260178.log 02:43:18 14 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 02:43:18 14 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0178dz 02:43:18 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0178dz.x00 02:43:18 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0178dz.x01 02:43:18 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0178dz.x02 02:43:18 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0178dz.x03 02:43:18 14 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0178dz.r in process_file_group 02:43:18 14 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [178] 02:43:18 14 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [178] 02:43:18 14 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260178) for profiles 02:43:18 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 02:43:18 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/570) 570 to QC_BAD because CT out of water 02:43:18 14 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.090m) 02:43:18 14 Feb 2017 UTC: INFO: QC.py(365): Changed (6/570) 2 206 207 213 224 227 to QC_PROBABLY_BAD because raw temperature spikes 02:43:18 14 Feb 2017 UTC: INFO: QC.py(408): Changed (6/570) 206 207 213 214 224 227 to QC_PROBABLY_BAD because raw conductivity spikes 02:43:18 14 Feb 2017 UTC: INFO: QC.py(180): Changed (6/570) 2 206 207 213 224 227 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:43:18 14 Feb 2017 UTC: INFO: QC.py(180): Changed (1/570) 214 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 02:43:18 14 Feb 2017 UTC: INFO: QC.py(180): Changed (1/570) 570 to QC_BAD because changed raw cond implies changed raw salinity 02:43:18 14 Feb 2017 UTC: INFO: QC.py(365): Changed (6/570) 2 206 207 213 224 227 to QC_INTERPOLATED because temperature spikes 02:43:18 14 Feb 2017 UTC: INFO: QC.py(408): Changed (6/570) 206 207 213 214 224 227 to QC_INTERPOLATED because conductivity spikes 02:43:18 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/570) 216:220 to QC_BAD because slow apogee CT flow 02:43:18 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/570) 1:6 to QC_BAD because prior to dive start 02:43:18 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/570) 1:6 216:220 570 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:43:18 14 Feb 2017 UTC: INFO: QC.py(180): Changed (12/570) 1:6 216:220 570 to QC_BAD because changed corrected salin implies changed speed 02:43:19 14 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:43:19 14 Feb 2017 UTC: INFO: QC.py(180): Changed (5/570) 206 207 213 224 227 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 02:43:19 14 Feb 2017 UTC: INFO: QC.py(180): Changed (1/570) 214 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 02:43:19 14 Feb 2017 UTC: INFO: QC.py(180): Changed (5/570) 206 207 213 224 227 to QC_INTERPOLATED because changed corrected temp implies changed speed 02:43:19 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.29 cm/s 02:43:19 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.73 cm/s 02:43:19 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:43:19 14 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (163/570) 118:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:43:19 14 Feb 2017 UTC: INFO: QC.py(180): Changed (2/570) 2 206 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:43:19 14 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (163/570) 118:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 02:43:19 14 Feb 2017 UTC: INFO: QC.py(180): Changed (2/570) 2 206 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:43:19 14 Feb 2017 UTC: INFO: QC.py(180): Changed (12/570) 1:6 216:220 570 to QC_BAD because changed salinity implies changed optode oxygen 02:43:19 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:43:19 14 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:43:19 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 02:43:19 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 178: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.11% reduction 02:43:19 14 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.178 02:43:19 14 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:43:19 14 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:43:19 14 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:43:19 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 02:43:19 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 02:44:38 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 02:44:39 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 02:44:39 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 02:44:53 14 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:44:53 14 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:44:53 14 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:44:53 14 Feb 2017 UTC /home/sg626/p6260178.log /home/sg626/p6260178.eng /home/sg626/p6260178.asc /home/sg626/p6260178.pro /home/sg626/p6260178.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 02:44:53 14 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:44:53 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:44:53 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:44:53 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:44:53 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:44:53 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:44:53 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:44:53 14 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:44:53 14 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:44:53 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:44:53 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:44:53 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:44:53 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:44:53 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:44:53 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:44:53 14 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:44:53 14 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:44:53 14 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:44:53 14 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:44:53 14 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:44:53 14 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:44:53 14 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:44:53 14 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:44:53 14 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 02:44:53 14 Feb 2017 UTC 05:48:06 14 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 30961 05:48:06 14 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 05:51:21 14 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 31226 05:51:21 14 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:51:21 14 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:51:21 14 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:51:21 14 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:51:21 14 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170213195120 ] 05:51:21 14 Feb 2017 UTC: INFO: Base.py(1333): PID:31234 05:51:21 14 Feb 2017 UTC: INFO: Base.py(1375): Started processing 05:51:21 14 Feb 2017 UTC 05:51:21 14 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:51:22 14 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:51:22 14 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:51:22 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:51:22 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:179 calls_made:1 call_cycle:0 05:51:22 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:51:22 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:179 calls_made:1 call_cycle:0 05:51:22 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:51:22 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:179 calls_made:1 call_cycle:0 05:51:22 14 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:179 calls_made:1 call_cycle:0 2330.9710 -15719.0570 02/14/17 05:46:01 UTC) to sdrifter@soest.hawaii.edu 05:51:22 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:179 calls_made:1 call_cycle:0 05:51:22 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:51:22 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:179 calls_made:1 call_cycle:0 05:51:22 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:51:22 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:179 calls_made:1 call_cycle:0 05:51:22 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:51:22 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:179 calls_made:1 call_cycle:0 05:51:22 14 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:51:22 14 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:51:25 14 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:51:25 14 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:51:25 14 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:51:25 14 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:51:25 14 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:51:25 14 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:51:26 14 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0179lz 05:51:26 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0179lz.x00 05:51:26 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0179lz.x01 05:51:26 14 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0179lz.r in process_file_group 05:51:26 14 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260179.log 05:51:26 14 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:51:26 14 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0179dz 05:51:26 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0179dz.x00 05:51:26 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0179dz.x01 05:51:26 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0179dz.x02 05:51:26 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0179dz.x03 05:51:26 14 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0179dz.r in process_file_group 05:51:26 14 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [179] 05:51:26 14 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [179] 05:51:27 14 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260179) for profiles 05:51:27 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:51:27 14 Feb 2017 UTC: INFO: QC.py(365): Changed (10/548) 3 193 194 197:199 206 207 210 235 to QC_PROBABLY_BAD because raw temperature spikes 05:51:27 14 Feb 2017 UTC: INFO: QC.py(408): Changed (7/548) 193 194 206 207 210 232 233 to QC_PROBABLY_BAD because raw conductivity spikes 05:51:27 14 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(963): Restarting anomaly after 66.16m: -0.2587 at 320.74m (137) 05:51:27 14 Feb 2017 UTC: INFO: QC.py(180): Changed (10/548) 3 193 194 197:199 206 207 210 235 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:51:27 14 Feb 2017 UTC: INFO: QC.py(180): Changed (2/548) 232 233 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 05:51:27 14 Feb 2017 UTC: INFO: QC.py(365): Changed (10/548) 3 193 194 197:199 206 207 210 235 to QC_INTERPOLATED because temperature spikes 05:51:27 14 Feb 2017 UTC: INFO: QC.py(408): Changed (7/548) 193 194 206 207 210 232 233 to QC_INTERPOLATED because conductivity spikes 05:51:27 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/548) 220:224 to QC_BAD because slow apogee CT flow 05:51:27 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/548) 1:6 to QC_BAD because prior to dive start 05:51:27 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/548) 1:6 220:224 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:51:27 14 Feb 2017 UTC: INFO: QC.py(180): Changed (11/548) 1:6 220:224 to QC_BAD because changed corrected salin implies changed speed 05:51:27 14 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:51:27 14 Feb 2017 UTC: INFO: QC.py(180): Changed (9/548) 193 194 197:199 206 207 210 235 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 05:51:27 14 Feb 2017 UTC: INFO: QC.py(180): Changed (2/548) 232 233 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 05:51:27 14 Feb 2017 UTC: INFO: QC.py(180): Changed (9/548) 193 194 197:199 206 207 210 235 to QC_INTERPOLATED because changed corrected temp implies changed speed 05:51:27 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.42 cm/s 05:51:27 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.80 cm/s 05:51:27 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:51:27 14 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (165/548) 118:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:51:27 14 Feb 2017 UTC: INFO: QC.py(180): Changed (2/548) 3 206 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:51:27 14 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (165/548) 118:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:51:27 14 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/548) 5 to QC_BAD because bad aa4330 oyxgen 05:51:27 14 Feb 2017 UTC: INFO: QC.py(180): Changed (2/548) 3 206 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:51:27 14 Feb 2017 UTC: INFO: QC.py(180): Changed (10/548) 1:4 6 220:224 to QC_BAD because changed salinity implies changed optode oxygen 05:51:27 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:51:27 14 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:51:27 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 05:51:28 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 179: Data set size for profile, binned and kkyy files reduced by 11 points, a 2.01% reduction 05:51:28 14 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.179 05:51:28 14 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.179 05:51:28 14 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:51:28 14 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:51:28 14 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:51:28 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 05:51:28 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 05:52:47 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 05:52:48 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 05:52:48 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 05:53:03 14 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:53:03 14 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:53:03 14 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:53:03 14 Feb 2017 UTC /home/sg626/p6260179.log /home/sg626/p6260179.eng /home/sg626/p6260179.asc /home/sg626/p6260179.pro /home/sg626/p6260179.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 05:53:03 14 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:53:03 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:53:03 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:53:03 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:53:03 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:53:03 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:53:03 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:53:03 14 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:53:03 14 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:53:03 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:53:03 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:53:03 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:53:03 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:53:03 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:53:03 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:53:03 14 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:53:03 14 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:53:03 14 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:53:03 14 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:53:03 14 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:53:03 14 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:53:03 14 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:53:03 14 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:53:03 14 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 05:53:03 14 Feb 2017 UTC 08:53:03 14 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 6908 08:53:03 14 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:55:38 14 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 7069 08:55:38 14 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:55:38 14 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:55:38 14 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:55:38 14 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:55:38 14 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170213225538 ] 08:55:38 14 Feb 2017 UTC: INFO: Base.py(1333): PID:7077 08:55:38 14 Feb 2017 UTC: INFO: Base.py(1375): Started processing 08:55:38 14 Feb 2017 UTC 08:55:38 14 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:55:39 14 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:55:39 14 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:55:39 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:55:39 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:180 calls_made:1 call_cycle:0 08:55:39 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:55:39 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:180 calls_made:1 call_cycle:0 08:55:39 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:55:39 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:180 calls_made:1 call_cycle:0 08:55:39 14 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:180 calls_made:1 call_cycle:0 2330.1330 -15717.2780 02/14/17 08:51:00 UTC) to sdrifter@soest.hawaii.edu 08:55:39 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:180 calls_made:1 call_cycle:0 08:55:39 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:55:39 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:180 calls_made:1 call_cycle:0 08:55:39 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:55:39 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:180 calls_made:1 call_cycle:0 08:55:39 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:55:39 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:180 calls_made:1 call_cycle:0 08:55:39 14 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:55:39 14 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:55:42 14 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:55:43 14 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:55:43 14 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:55:43 14 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:55:43 14 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:55:43 14 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:55:43 14 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0180lz 08:55:43 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0180lz.x00 08:55:43 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0180lz.x01 08:55:43 14 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0180lz.r in process_file_group 08:55:43 14 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260180.log 08:55:43 14 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:55:43 14 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0180dz 08:55:43 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0180dz.x00 08:55:43 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0180dz.x01 08:55:43 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0180dz.x02 08:55:43 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0180dz.x03 08:55:43 14 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0180dz.r in process_file_group 08:55:44 14 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [180] 08:55:44 14 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [180] 08:55:44 14 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260180) for profiles 08:55:44 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:55:44 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/533) 532 533 to QC_BAD because CT out of water 08:55:44 14 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.077m) 08:55:44 14 Feb 2017 UTC: INFO: QC.py(365): Changed (12/533) 2 3 192 193 203 204 217 235 236 238 239 244 to QC_PROBABLY_BAD because raw temperature spikes 08:55:44 14 Feb 2017 UTC: INFO: QC.py(377): Changed (1/533) 533 to QC_BAD because raw salinity below bound 08:55:44 14 Feb 2017 UTC: INFO: QC.py(408): Changed (10/533) 192 193 201 203 204 217 235 236 238 239 to QC_PROBABLY_BAD because raw conductivity spikes 08:55:44 14 Feb 2017 UTC: INFO: QC.py(180): Changed (12/533) 2 3 192 193 203 204 217 235 236 238 239 244 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:55:44 14 Feb 2017 UTC: INFO: QC.py(180): Changed (1/533) 201 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 08:55:44 14 Feb 2017 UTC: INFO: QC.py(180): Changed (1/533) 532 to QC_BAD because changed raw cond implies changed raw salinity 08:55:44 14 Feb 2017 UTC: INFO: QC.py(365): Changed (12/533) 2 3 192 193 203 204 217 235 236 238 239 244 to QC_INTERPOLATED because temperature spikes 08:55:44 14 Feb 2017 UTC: INFO: QC.py(377): Changed (1/533) 533 to QC_BAD because salinity below bound 08:55:44 14 Feb 2017 UTC: INFO: QC.py(408): Changed (10/533) 192 193 201 203 204 217 235 236 238 239 to QC_INTERPOLATED because conductivity spikes 08:55:44 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/533) 221:225 to QC_BAD because slow apogee CT flow 08:55:44 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/533) 1:6 to QC_BAD because prior to dive start 08:55:44 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/533) 1:6 221:225 532 533 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:55:44 14 Feb 2017 UTC: INFO: QC.py(180): Changed (13/533) 1:6 221:225 532 533 to QC_BAD because changed corrected salin implies changed speed 08:55:45 14 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:55:45 14 Feb 2017 UTC: INFO: QC.py(180): Changed (10/533) 192 193 203 204 217 235 236 238 239 244 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 08:55:45 14 Feb 2017 UTC: INFO: QC.py(180): Changed (1/533) 201 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 08:55:45 14 Feb 2017 UTC: INFO: QC.py(180): Changed (10/533) 192 193 203 204 217 235 236 238 239 244 to QC_INTERPOLATED because changed corrected temp implies changed speed 08:55:45 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.90 cm/s 08:55:45 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.22 cm/s 08:55:45 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:55:45 14 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/533) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:55:45 14 Feb 2017 UTC: INFO: QC.py(180): Changed (3/533) 2 3 236 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:55:45 14 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/533) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:55:45 14 Feb 2017 UTC: INFO: QC.py(180): Changed (3/533) 2 3 236 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:55:45 14 Feb 2017 UTC: INFO: QC.py(180): Changed (13/533) 1:6 221:225 532 533 to QC_BAD because changed salinity implies changed optode oxygen 08:55:45 14 Feb 2017 UTC: INFO: QC.py(180): Changed (1/533) 201 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 08:55:45 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:55:45 14 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:55:45 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 08:55:45 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 180: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.44% reduction 08:55:45 14 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.180 08:55:45 14 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:55:45 14 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:55:45 14 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:55:45 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 08:55:45 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 08:57:05 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 08:57:05 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 08:57:05 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 08:57:20 14 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:57:20 14 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:57:20 14 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:57:20 14 Feb 2017 UTC /home/sg626/p6260180.log /home/sg626/p6260180.eng /home/sg626/p6260180.asc /home/sg626/p6260180.pro /home/sg626/p6260180.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 08:57:20 14 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:57:20 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:57:20 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:57:20 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:57:20 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:57:20 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:57:20 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:57:20 14 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:57:20 14 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:57:20 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:57:20 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:57:20 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:57:20 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:57:20 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:57:20 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:57:20 14 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:57:20 14 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:57:20 14 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:57:20 14 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:57:20 14 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:57:20 14 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:57:20 14 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:57:20 14 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:57:20 14 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 08:57:20 14 Feb 2017 UTC 11:59:49 14 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 15293 11:59:49 14 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:02:30 14 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 15672 12:02:30 14 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:02:30 14 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:02:30 14 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:02:30 14 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:02:30 14 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170214020229 ] 12:02:30 14 Feb 2017 UTC: INFO: Base.py(1333): PID:15679 12:02:30 14 Feb 2017 UTC: INFO: Base.py(1375): Started processing 12:02:30 14 Feb 2017 UTC 12:02:30 14 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:02:31 14 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:02:31 14 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:02:31 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:02:31 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:181 calls_made:2 call_cycle:0 12:02:31 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:02:31 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:181 calls_made:2 call_cycle:0 12:02:31 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:02:31 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:181 calls_made:2 call_cycle:0 12:02:31 14 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:181 calls_made:2 call_cycle:0 2329.0640 -15715.4090 02/14/17 11:55:31 UTC) to sdrifter@soest.hawaii.edu 12:02:31 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:181 calls_made:2 call_cycle:0 12:02:31 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:02:31 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:181 calls_made:2 call_cycle:0 12:02:31 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:02:31 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:181 calls_made:2 call_cycle:0 12:02:31 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:02:31 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:181 calls_made:2 call_cycle:0 12:02:31 14 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:02:31 14 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:02:34 14 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:02:34 14 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:02:34 14 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:02:34 14 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:02:34 14 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:02:34 14 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:02:35 14 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0181lz 12:02:35 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0181lz.x00 12:02:35 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0181lz.x01 12:02:35 14 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0181lz.r in process_file_group 12:02:35 14 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260181.log 12:02:35 14 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:02:35 14 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0181dz 12:02:35 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0181dz.x00 12:02:35 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0181dz.x01 12:02:35 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0181dz.x02 12:02:35 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0181dz.x03 12:02:35 14 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0181dz.r in process_file_group 12:02:35 14 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [181] 12:02:35 14 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [181] 12:02:35 14 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260181) for profiles 12:02:35 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 12:02:36 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/539) 538 539 to QC_BAD because CT out of water 12:02:36 14 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.107m) 12:02:36 14 Feb 2017 UTC: INFO: QC.py(365): Changed (18/539) 188 200 202:205 214 225:227 231 234 235 237 238 ... to QC_PROBABLY_BAD because raw temperature spikes 12:02:36 14 Feb 2017 UTC: INFO: QC.py(377): Changed (1/539) 539 to QC_BAD because raw salinity below bound 12:02:36 14 Feb 2017 UTC: INFO: QC.py(408): Changed (15/539) 188 200 202:205 213 214 225:227 235 237 238 248 to QC_PROBABLY_BAD because raw conductivity spikes 12:02:36 14 Feb 2017 UTC: INFO: QC.py(180): Changed (18/539) 188 200 202:205 214 225:227 231 234 235 237 238 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 12:02:36 14 Feb 2017 UTC: INFO: QC.py(180): Changed (1/539) 213 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 12:02:36 14 Feb 2017 UTC: INFO: QC.py(180): Changed (1/539) 538 to QC_BAD because changed raw cond implies changed raw salinity 12:02:36 14 Feb 2017 UTC: INFO: QC.py(365): Changed (18/539) 188 200 202:205 214 225:227 231 234 235 237 238 ... to QC_INTERPOLATED because temperature spikes 12:02:36 14 Feb 2017 UTC: INFO: QC.py(377): Changed (1/539) 539 to QC_BAD because salinity below bound 12:02:36 14 Feb 2017 UTC: INFO: QC.py(408): Changed (15/539) 188 200 202:205 213 214 225:227 235 237 238 248 to QC_INTERPOLATED because conductivity spikes 12:02:36 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/539) 220:224 to QC_BAD because slow apogee CT flow 12:02:36 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/539) 1:6 to QC_BAD because prior to dive start 12:02:36 14 Feb 2017 UTC: INFO: QC.py(488): Changed (3/539) 225:227 to QC_PROBABLY_BAD because bad interpolation anchors 12:02:36 14 Feb 2017 UTC: INFO: QC.py(489): SUGGESTION: 181 bad_conductivity data_points in_between 223 227 % bad interpolation anchors 12:02:36 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/539) 1:6 220:224 538 539 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:02:36 14 Feb 2017 UTC: INFO: QC.py(180): Changed (13/539) 1:6 220:224 538 539 to QC_BAD because changed corrected salin implies changed speed 12:02:36 14 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:02:36 14 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 181 interp_salinity data_points in_between 260 322 % suspect thermal-inertia points 305 12:02:36 14 Feb 2017 UTC: INFO: QC.py(180): Changed (18/539) 188 200 202:205 214 225:227 231 234 235 237 238 ... to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 12:02:36 14 Feb 2017 UTC: INFO: QC.py(180): Changed (3/539) 225:227 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 12:02:36 14 Feb 2017 UTC: INFO: QC.py(180): Changed (1/539) 213 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 12:02:36 14 Feb 2017 UTC: INFO: QC.py(180): Changed (18/539) 188 200 202:205 214 225:227 231 234 235 237 238 ... to QC_INTERPOLATED because changed corrected temp implies changed speed 12:02:36 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.11 cm/s 12:02:36 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.23 cm/s 12:02:36 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:02:36 14 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (162/539) 119 120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:02:36 14 Feb 2017 UTC: INFO: QC.py(180): Changed (3/539) 226 231 241 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 12:02:36 14 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (162/539) 119 120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 12:02:36 14 Feb 2017 UTC: INFO: QC.py(180): Changed (3/539) 226 231 241 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 12:02:36 14 Feb 2017 UTC: INFO: QC.py(180): Changed (1/539) 226 to QC_PROBABLY_BAD because changed salinity implies changed optode oxygen 12:02:36 14 Feb 2017 UTC: INFO: QC.py(180): Changed (13/539) 1:6 220:224 538 539 to QC_BAD because changed salinity implies changed optode oxygen 12:02:36 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:02:36 14 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:02:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 12:02:37 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 181: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.41% reduction 12:02:37 14 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.181 12:02:37 14 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:02:37 14 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:02:37 14 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:02:37 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 12:02:37 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 12:03:57 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 12:03:58 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 12:03:58 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 12:04:12 14 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:04:12 14 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:04:12 14 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 12:04:12 14 Feb 2017 UTC /home/sg626/p6260181.log /home/sg626/p6260181.eng /home/sg626/p6260181.asc /home/sg626/p6260181.pro /home/sg626/p6260181.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 12:04:12 14 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:04:12 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:04:12 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:04:12 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:04:12 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:04:12 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:04:12 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:04:12 14 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:04:12 14 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:04:12 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:04:12 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:04:12 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:04:12 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:04:12 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:04:12 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:04:12 14 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:04:12 14 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 12:04:12 14 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 12:04:12 14 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 12:04:12 14 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 12:04:12 14 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:04:12 14 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:04:12 14 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:04:12 14 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 12:04:12 14 Feb 2017 UTC 15:04:48 14 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 20697 15:04:48 14 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 15:07:30 14 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 20807 15:07:30 14 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 15:07:30 14 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 15:07:30 14 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 15:07:30 14 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 15:07:30 14 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170214050729 ] 15:07:30 14 Feb 2017 UTC: INFO: Base.py(1333): PID:20814 15:07:30 14 Feb 2017 UTC: INFO: Base.py(1375): Started processing 15:07:30 14 Feb 2017 UTC 15:07:30 14 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 15:07:31 14 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 15:07:31 14 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 15:07:31 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:07:31 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:182 calls_made:1 call_cycle:0 15:07:31 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:07:31 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:182 calls_made:1 call_cycle:0 15:07:31 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:07:31 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:182 calls_made:1 call_cycle:0 15:07:31 14 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:182 calls_made:1 call_cycle:0 2328.2640 -15713.2310 02/14/17 15:02:48 UTC) to sdrifter@soest.hawaii.edu 15:07:31 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:182 calls_made:1 call_cycle:0 15:07:31 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:07:31 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:182 calls_made:1 call_cycle:0 15:07:31 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:07:31 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:182 calls_made:1 call_cycle:0 15:07:31 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:07:31 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:182 calls_made:1 call_cycle:0 15:07:31 14 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:07:31 14 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 15:07:34 14 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 15:07:34 14 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 15:07:34 14 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 15:07:34 14 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 15:07:34 14 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 15:07:34 14 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 15:07:35 14 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0182lz 15:07:35 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0182lz.x00 15:07:35 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0182lz.x01 15:07:35 14 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0182lz.r in process_file_group 15:07:35 14 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260182.log 15:07:35 14 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 15:07:35 14 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0182dz 15:07:35 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0182dz.x00 15:07:35 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0182dz.x01 15:07:35 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0182dz.x02 15:07:35 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0182dz.x03 15:07:35 14 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0182dz.r in process_file_group 15:07:35 14 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [182] 15:07:35 14 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [182] 15:07:35 14 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260182) for profiles 15:07:35 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 15:07:36 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/548) 548 to QC_BAD because CT out of water 15:07:36 14 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.071m) 15:07:36 14 Feb 2017 UTC: INFO: QC.py(365): Changed (9/548) 2 4 189 193 205 216 220 230 231 to QC_PROBABLY_BAD because raw temperature spikes 15:07:36 14 Feb 2017 UTC: INFO: QC.py(408): Changed (6/548) 189 195 196 205 230 231 to QC_PROBABLY_BAD because raw conductivity spikes 15:07:36 14 Feb 2017 UTC: INFO: QC.py(180): Changed (9/548) 2 4 189 193 205 216 220 230 231 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 15:07:36 14 Feb 2017 UTC: INFO: QC.py(180): Changed (2/548) 195 196 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 15:07:36 14 Feb 2017 UTC: INFO: QC.py(180): Changed (1/548) 548 to QC_BAD because changed raw cond implies changed raw salinity 15:07:36 14 Feb 2017 UTC: INFO: QC.py(365): Changed (9/548) 2 4 189 193 205 216 220 230 231 to QC_INTERPOLATED because temperature spikes 15:07:36 14 Feb 2017 UTC: INFO: QC.py(408): Changed (6/548) 189 195 196 205 230 231 to QC_INTERPOLATED because conductivity spikes 15:07:36 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/548) 214:218 to QC_BAD because slow apogee CT flow 15:07:36 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/548) 1:6 to QC_BAD because prior to dive start 15:07:36 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/548) 1:6 214:218 548 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 15:07:36 14 Feb 2017 UTC: INFO: QC.py(180): Changed (12/548) 1:6 214:218 548 to QC_BAD because changed corrected salin implies changed speed 15:07:36 14 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 15:07:36 14 Feb 2017 UTC: INFO: QC.py(180): Changed (6/548) 189 193 205 220 230 231 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 15:07:36 14 Feb 2017 UTC: INFO: QC.py(180): Changed (2/548) 195 196 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 15:07:36 14 Feb 2017 UTC: INFO: QC.py(180): Changed (6/548) 189 193 205 220 230 231 to QC_INTERPOLATED because changed corrected temp implies changed speed 15:07:36 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.44 cm/s 15:07:36 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.30 cm/s 15:07:36 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 15:07:36 14 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/548) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 15:07:36 14 Feb 2017 UTC: INFO: QC.py(180): Changed (4/548) 2 4 216 231 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 15:07:36 14 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/548) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 15:07:36 14 Feb 2017 UTC: INFO: QC.py(180): Changed (4/548) 2 4 216 231 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 15:07:36 14 Feb 2017 UTC: INFO: QC.py(180): Changed (12/548) 1:6 214:218 548 to QC_BAD because changed salinity implies changed optode oxygen 15:07:36 14 Feb 2017 UTC: INFO: QC.py(180): Changed (1/548) 196 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 15:07:36 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 15:07:36 14 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 15:07:36 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 15:07:37 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 182: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.19% reduction 15:07:37 14 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.182 15:07:37 14 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 15:07:37 14 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 15:07:37 14 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 15:07:37 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 15:07:37 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 15:08:57 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 15:08:58 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 15:08:58 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 15:09:13 14 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 15:09:13 14 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 15:09:13 14 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 15:09:13 14 Feb 2017 UTC /home/sg626/p6260182.log /home/sg626/p6260182.eng /home/sg626/p6260182.asc /home/sg626/p6260182.pro /home/sg626/p6260182.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 15:09:13 14 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 15:09:13 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:09:13 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:09:13 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:09:13 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:09:13 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:09:13 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:09:13 14 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:09:13 14 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 15:09:13 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:09:13 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:09:13 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:09:13 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:09:13 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:09:13 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:09:13 14 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:09:13 14 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 15:09:13 14 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 15:09:13 14 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 15:09:13 14 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 15:09:13 14 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 15:09:13 14 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 15:09:13 14 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 15:09:13 14 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 15:09:13 14 Feb 2017 UTC 18:11:08 14 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 25891 18:11:08 14 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 18:13:49 14 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 25997 18:13:49 14 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:13:49 14 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 18:13:49 14 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 18:13:49 14 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:13:49 14 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170214081348 ] 18:13:49 14 Feb 2017 UTC: INFO: Base.py(1333): PID:26004 18:13:49 14 Feb 2017 UTC: INFO: Base.py(1375): Started processing 18:13:49 14 Feb 2017 UTC 18:13:49 14 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 18:13:50 14 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 18:13:50 14 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:13:50 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:13:50 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:183 calls_made:1 call_cycle:0 18:13:50 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:13:50 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:183 calls_made:1 call_cycle:0 18:13:50 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:13:50 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:183 calls_made:1 call_cycle:0 18:13:50 14 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:183 calls_made:1 call_cycle:0 2326.9510 -15711.3130 02/14/17 18:09:01 UTC) to sdrifter@soest.hawaii.edu 18:13:50 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:183 calls_made:1 call_cycle:0 18:13:50 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:13:50 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:183 calls_made:1 call_cycle:0 18:13:50 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:13:50 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:183 calls_made:1 call_cycle:0 18:13:50 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:13:50 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:183 calls_made:1 call_cycle:0 18:13:50 14 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:13:50 14 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:13:53 14 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:13:53 14 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:13:53 14 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 18:13:53 14 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:13:53 14 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:13:53 14 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 18:13:54 14 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0183lz 18:13:54 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0183lz.x00 18:13:54 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0183lz.x01 18:13:54 14 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0183lz.r in process_file_group 18:13:54 14 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260183.log 18:13:54 14 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 18:13:54 14 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0183dz 18:13:54 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0183dz.x00 18:13:54 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0183dz.x01 18:13:54 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0183dz.x02 18:13:54 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0183dz.x03 18:13:54 14 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0183dz.r in process_file_group 18:13:54 14 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [183] 18:13:54 14 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [183] 18:13:54 14 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260183) for profiles 18:13:54 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 18:13:55 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/552) 552 to QC_BAD because CT out of water 18:13:55 14 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.109m) 18:13:55 14 Feb 2017 UTC: INFO: QC.py(365): Changed (8/552) 179 199 200 210 217 235 251 252 to QC_PROBABLY_BAD because raw temperature spikes 18:13:55 14 Feb 2017 UTC: INFO: QC.py(377): Changed (1/552) 552 to QC_BAD because raw salinity below bound 18:13:55 14 Feb 2017 UTC: INFO: QC.py(408): Changed (5/552) 2 179 198 251 252 to QC_PROBABLY_BAD because raw conductivity spikes 18:13:55 14 Feb 2017 UTC: INFO: QC.py(180): Changed (8/552) 179 199 200 210 217 235 251 252 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 18:13:55 14 Feb 2017 UTC: INFO: QC.py(180): Changed (2/552) 2 198 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 18:13:55 14 Feb 2017 UTC: INFO: QC.py(365): Changed (8/552) 179 199 200 210 217 235 251 252 to QC_INTERPOLATED because temperature spikes 18:13:55 14 Feb 2017 UTC: INFO: QC.py(377): Changed (1/552) 552 to QC_BAD because salinity below bound 18:13:55 14 Feb 2017 UTC: INFO: QC.py(408): Changed (5/552) 2 179 198 251 252 to QC_INTERPOLATED because conductivity spikes 18:13:55 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/552) 219:223 to QC_BAD because slow apogee CT flow 18:13:55 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/552) 1:6 to QC_BAD because prior to dive start 18:13:55 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3343): SUGGESTION: 183 interp_conductivity data_points between 122 126 % 23.2m SUSPECT unresolved strong conductivity anomaly 18:13:55 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/552) 1:6 219:223 552 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 18:13:55 14 Feb 2017 UTC: INFO: QC.py(180): Changed (12/552) 1:6 219:223 552 to QC_BAD because changed corrected salin implies changed speed 18:13:55 14 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 18:13:55 14 Feb 2017 UTC: INFO: QC.py(180): Changed (8/552) 179 199 200 210 217 235 251 252 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 18:13:55 14 Feb 2017 UTC: INFO: QC.py(180): Changed (1/552) 198 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 18:13:55 14 Feb 2017 UTC: INFO: QC.py(180): Changed (8/552) 179 199 200 210 217 235 251 252 to QC_INTERPOLATED because changed corrected temp implies changed speed 18:13:55 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.53 cm/s 18:13:55 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.16 cm/s 18:13:55 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 18:13:55 14 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/552) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 18:13:55 14 Feb 2017 UTC: INFO: QC.py(180): Changed (1/552) 251 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 18:13:55 14 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/552) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 18:13:55 14 Feb 2017 UTC: INFO: QC.py(180): Changed (1/552) 251 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 18:13:55 14 Feb 2017 UTC: INFO: QC.py(180): Changed (12/552) 1:6 219:223 552 to QC_BAD because changed salinity implies changed optode oxygen 18:13:55 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 18:13:55 14 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 18:13:55 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 18:13:56 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 183: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.17% reduction 18:13:56 14 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.183 18:13:56 14 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:13:56 14 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:13:56 14 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:13:56 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 18:13:56 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 18:15:18 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 18:15:18 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 18:15:18 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 18:15:33 14 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:15:33 14 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:15:33 14 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:15:33 14 Feb 2017 UTC /home/sg626/p6260183.log /home/sg626/p6260183.eng /home/sg626/p6260183.asc /home/sg626/p6260183.pro /home/sg626/p6260183.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 18:15:33 14 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:15:33 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:15:33 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:15:33 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:15:33 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:15:33 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:15:33 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:15:33 14 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:15:33 14 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:15:33 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:15:33 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:15:33 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:15:33 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:15:33 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:15:33 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:15:33 14 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:15:33 14 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 18:15:33 14 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 18:15:33 14 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 18:15:33 14 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 18:15:33 14 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:15:33 14 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:15:33 14 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:15:33 14 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 18:15:33 14 Feb 2017 UTC 21:25:25 14 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 31253 21:25:25 14 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:28:15 14 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 31375 21:28:15 14 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:28:15 14 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:28:15 14 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:28:15 14 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:28:15 14 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170214112814 ] 21:28:15 14 Feb 2017 UTC: INFO: Base.py(1333): PID:31383 21:28:15 14 Feb 2017 UTC: INFO: Base.py(1375): Started processing 21:28:15 14 Feb 2017 UTC 21:28:15 14 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:28:15 14 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:28:15 14 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:28:15 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:28:15 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:184 calls_made:1 call_cycle:0 21:28:15 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:28:15 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:184 calls_made:1 call_cycle:0 21:28:15 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:28:15 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:184 calls_made:1 call_cycle:0 21:28:15 14 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:184 calls_made:1 call_cycle:0 2325.1380 -15710.2070 02/14/17 21:23:18 UTC) to sdrifter@soest.hawaii.edu 21:28:16 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:184 calls_made:1 call_cycle:0 21:28:16 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:28:16 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:184 calls_made:1 call_cycle:0 21:28:16 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:28:16 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:184 calls_made:1 call_cycle:0 21:28:16 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:28:16 14 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:184 calls_made:1 call_cycle:0 21:28:16 14 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:28:16 14 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:28:19 14 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:28:19 14 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:28:19 14 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:28:19 14 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:28:19 14 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:28:19 14 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:28:20 14 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0184lz 21:28:20 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0184lz.x00 21:28:20 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0184lz.x01 21:28:20 14 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0184lz.r in process_file_group 21:28:20 14 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260184.log 21:28:20 14 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:28:20 14 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0184dz 21:28:20 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0184dz.x00 21:28:20 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0184dz.x01 21:28:20 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0184dz.x02 21:28:20 14 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0184dz.x03 21:28:20 14 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0184dz.r in process_file_group 21:28:20 14 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [184] 21:28:20 14 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [184] 21:28:20 14 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260184) for profiles 21:28:20 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:28:21 14 Feb 2017 UTC: INFO: QC.py(365): Changed (11/588) 196 197 199 200 202 237:239 241 242 246 to QC_PROBABLY_BAD because raw temperature spikes 21:28:21 14 Feb 2017 UTC: INFO: QC.py(408): Changed (12/588) 191 196 197 199 200 202 237:239 241 242 246 to QC_PROBABLY_BAD because raw conductivity spikes 21:28:21 14 Feb 2017 UTC: INFO: QC.py(180): Changed (11/588) 196 197 199 200 202 237:239 241 242 246 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:28:21 14 Feb 2017 UTC: INFO: QC.py(180): Changed (1/588) 191 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 21:28:21 14 Feb 2017 UTC: INFO: QC.py(365): Changed (11/588) 196 197 199 200 202 237:239 241 242 246 to QC_INTERPOLATED because temperature spikes 21:28:21 14 Feb 2017 UTC: INFO: QC.py(408): Changed (12/588) 191 196 197 199 200 202 237:239 241 242 246 to QC_INTERPOLATED because conductivity spikes 21:28:21 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/588) 222:226 to QC_BAD because slow apogee CT flow 21:28:21 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/588) 1:6 to QC_BAD because prior to dive start 21:28:21 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/588) 1:6 222:226 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:28:21 14 Feb 2017 UTC: INFO: QC.py(180): Changed (11/588) 1:6 222:226 to QC_BAD because changed corrected salin implies changed speed 21:28:21 14 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:28:21 14 Feb 2017 UTC: INFO: QC.py(180): Changed (11/588) 196 197 199 200 202 237:239 241 242 246 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 21:28:21 14 Feb 2017 UTC: INFO: QC.py(180): Changed (1/588) 191 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 21:28:21 14 Feb 2017 UTC: INFO: QC.py(180): Changed (11/588) 196 197 199 200 202 237:239 241 242 246 to QC_INTERPOLATED because changed corrected temp implies changed speed 21:28:21 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.01 cm/s 21:28:21 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.99 cm/s 21:28:21 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:28:21 14 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (163/588) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:28:21 14 Feb 2017 UTC: INFO: QC.py(180): Changed (3/588) 196 241 246 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:28:21 14 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (163/588) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:28:21 14 Feb 2017 UTC: INFO: QC.py(180): Changed (3/588) 196 241 246 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:28:21 14 Feb 2017 UTC: INFO: QC.py(180): Changed (11/588) 1:6 222:226 to QC_BAD because changed salinity implies changed optode oxygen 21:28:21 14 Feb 2017 UTC: INFO: QC.py(180): Changed (1/588) 191 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 21:28:21 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:28:21 14 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:28:21 14 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:28:22 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 184: Data set size for profile, binned and kkyy files reduced by 11 points, a 1.87% reduction 21:28:22 14 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.184 21:28:22 14 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:28:22 14 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:28:22 14 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:28:22 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:28:22 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 21:29:44 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 21:29:45 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 21:29:45 14 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 21:29:59 14 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:29:59 14 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:29:59 14 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:29:59 14 Feb 2017 UTC /home/sg626/p6260184.log /home/sg626/p6260184.eng /home/sg626/p6260184.asc /home/sg626/p6260184.pro /home/sg626/p6260184.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 21:29:59 14 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:29:59 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:29:59 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:29:59 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:29:59 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:29:59 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:29:59 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:29:59 14 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:29:59 14 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:29:59 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:29:59 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:29:59 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:29:59 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:29:59 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:29:59 14 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:29:59 14 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:29:59 14 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:29:59 14 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:29:59 14 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:29:59 14 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:29:59 14 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:29:59 14 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:29:59 14 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:29:59 14 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 21:29:59 14 Feb 2017 UTC 00:30:12 15 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 4267 00:30:12 15 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:33:00 15 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 4391 00:33:00 15 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:33:00 15 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:33:00 15 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:33:00 15 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:33:00 15 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170214143259 ] 00:33:00 15 Feb 2017 UTC: INFO: Base.py(1333): PID:4398 00:33:00 15 Feb 2017 UTC: INFO: Base.py(1375): Started processing 00:33:00 15 Feb 2017 UTC 00:33:00 15 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:33:01 15 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:33:01 15 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:33:01 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:33:01 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:185 calls_made:1 call_cycle:0 00:33:01 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:33:01 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:185 calls_made:1 call_cycle:0 00:33:01 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:33:01 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:185 calls_made:1 call_cycle:0 00:33:01 15 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:185 calls_made:1 call_cycle:0 2323.6390 -15709.2710 02/15/17 00:28:01 UTC) to sdrifter@soest.hawaii.edu 00:33:01 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:185 calls_made:1 call_cycle:0 00:33:01 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:33:01 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:185 calls_made:1 call_cycle:0 00:33:01 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:33:01 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:185 calls_made:1 call_cycle:0 00:33:01 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:33:01 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:185 calls_made:1 call_cycle:0 00:33:01 15 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:33:01 15 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:33:04 15 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:33:05 15 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:33:05 15 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:33:05 15 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:33:05 15 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:33:05 15 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:33:05 15 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0185lz 00:33:05 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0185lz.x00 00:33:05 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0185lz.x01 00:33:05 15 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0185lz.r in process_file_group 00:33:05 15 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260185.log 00:33:05 15 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:33:05 15 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0185dz 00:33:05 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0185dz.x00 00:33:05 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0185dz.x01 00:33:05 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0185dz.x02 00:33:05 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0185dz.x03 00:33:05 15 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0185dz.r in process_file_group 00:33:06 15 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [185] 00:33:06 15 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [185] 00:33:06 15 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260185) for profiles 00:33:06 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 00:33:06 15 Feb 2017 UTC: INFO: QC.py(365): Changed (19/554) 2 187:191 193 195 197 210 211 215 217 227:229 232 ... to QC_PROBABLY_BAD because raw temperature spikes 00:33:06 15 Feb 2017 UTC: INFO: QC.py(408): Changed (17/554) 187:191 193 195 197 210 211 215 222 227:229 232 ... to QC_PROBABLY_BAD because raw conductivity spikes 00:33:06 15 Feb 2017 UTC: INFO: QC.py(180): Changed (19/554) 2 187:191 193 195 197 210 211 215 217 227:229 232 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:33:06 15 Feb 2017 UTC: INFO: QC.py(180): Changed (1/554) 222 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 00:33:06 15 Feb 2017 UTC: INFO: QC.py(365): Changed (19/554) 2 187:191 193 195 197 210 211 215 217 227:229 232 ... to QC_INTERPOLATED because temperature spikes 00:33:06 15 Feb 2017 UTC: INFO: QC.py(408): Changed (17/554) 187:191 193 195 197 210 211 215 222 227:229 232 ... to QC_INTERPOLATED because conductivity spikes 00:33:06 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/554) 215:220 to QC_BAD because slow apogee CT flow 00:33:06 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/554) 1:6 to QC_BAD because prior to dive start 00:33:06 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/554) 553 554 to QC_BAD because end of climb 00:33:06 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/554) 1:6 215:220 553 554 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:33:06 15 Feb 2017 UTC: INFO: QC.py(180): Changed (14/554) 1:6 215:220 553 554 to QC_BAD because changed corrected salin implies changed speed 00:33:06 15 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:33:06 15 Feb 2017 UTC: INFO: QC.py(180): Changed (15/554) 187:191 193 195 197 210 211 227:229 232 234 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 00:33:06 15 Feb 2017 UTC: INFO: QC.py(180): Changed (1/554) 222 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 00:33:06 15 Feb 2017 UTC: INFO: QC.py(180): Changed (15/554) 187:191 193 195 197 210 211 227:229 232 234 to QC_INTERPOLATED because changed corrected temp implies changed speed 00:33:06 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.71 cm/s 00:33:06 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.00 cm/s 00:33:06 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:33:06 15 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/554) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:33:06 15 Feb 2017 UTC: INFO: QC.py(180): Changed (4/554) 2 191 211 553 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:33:06 15 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/554) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 00:33:06 15 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/554) 552 to QC_BAD because bad aa4330 oyxgen 00:33:06 15 Feb 2017 UTC: INFO: QC.py(180): Changed (4/554) 2 191 211 553 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:33:06 15 Feb 2017 UTC: INFO: QC.py(180): Changed (14/554) 1:6 215:220 553 554 to QC_BAD because changed salinity implies changed optode oxygen 00:33:06 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:33:06 15 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:33:06 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 00:33:07 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 185: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.53% reduction 00:33:07 15 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.185 00:33:07 15 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:33:07 15 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:33:07 15 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:33:07 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 00:33:07 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 00:34:30 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 00:34:30 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 00:34:30 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 00:34:45 15 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:34:45 15 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:34:45 15 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:34:45 15 Feb 2017 UTC /home/sg626/p6260185.log /home/sg626/p6260185.eng /home/sg626/p6260185.asc /home/sg626/p6260185.pro /home/sg626/p6260185.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 00:34:45 15 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:34:45 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:34:45 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:34:45 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:34:45 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:34:45 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:34:45 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:34:45 15 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:34:45 15 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:34:45 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:34:45 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:34:45 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:34:45 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:34:45 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:34:45 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:34:45 15 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:34:45 15 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:34:45 15 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:34:45 15 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:34:45 15 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:34:45 15 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:34:45 15 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:34:45 15 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:34:45 15 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 00:34:45 15 Feb 2017 UTC 03:22:48 15 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 9331 03:22:48 15 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:25:29 15 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 9452 03:25:29 15 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:25:29 15 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:25:29 15 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:25:29 15 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:25:29 15 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170214172528 ] 03:25:29 15 Feb 2017 UTC: INFO: Base.py(1333): PID:9459 03:25:29 15 Feb 2017 UTC: INFO: Base.py(1375): Started processing 03:25:29 15 Feb 2017 UTC 03:25:29 15 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:25:30 15 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:25:30 15 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:25:30 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:25:30 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:186 calls_made:1 call_cycle:0 03:25:30 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:25:30 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:186 calls_made:1 call_cycle:0 03:25:30 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:25:30 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:186 calls_made:1 call_cycle:0 03:25:30 15 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:186 calls_made:1 call_cycle:0 2322.4190 -15707.7370 02/15/17 03:20:30 UTC) to sdrifter@soest.hawaii.edu 03:25:30 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:186 calls_made:1 call_cycle:0 03:25:30 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:25:30 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:186 calls_made:1 call_cycle:0 03:25:30 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:25:30 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:186 calls_made:1 call_cycle:0 03:25:30 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:25:30 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:186 calls_made:1 call_cycle:0 03:25:30 15 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:25:30 15 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:25:33 15 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:25:33 15 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:25:33 15 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:25:33 15 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:25:33 15 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:25:33 15 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:25:34 15 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0186lz 03:25:34 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0186lz.x00 03:25:34 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0186lz.x01 03:25:34 15 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0186lz.r in process_file_group 03:25:34 15 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260186.log 03:25:34 15 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:25:34 15 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0186dz 03:25:34 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0186dz.x00 03:25:34 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0186dz.x01 03:25:34 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0186dz.x02 03:25:34 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0186dz.x03 03:25:34 15 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0186dz.r in process_file_group 03:25:34 15 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [186] 03:25:34 15 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [186] 03:25:35 15 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260186) for profiles 03:25:35 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 03:25:35 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/522) 522 to QC_BAD because CT out of water 03:25:35 15 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.093m) 03:25:35 15 Feb 2017 UTC: INFO: QC.py(365): Changed (11/522) 2 3 168 171 183 184 187 202 211 212 217 to QC_PROBABLY_BAD because raw temperature spikes 03:25:35 15 Feb 2017 UTC: INFO: QC.py(377): Changed (1/522) 522 to QC_BAD because raw salinity below bound 03:25:35 15 Feb 2017 UTC: INFO: QC.py(408): Changed (8/522) 168 171 183 184 202 211 212 217 to QC_PROBABLY_BAD because raw conductivity spikes 03:25:35 15 Feb 2017 UTC: INFO: QC.py(180): Changed (11/522) 2 3 168 171 183 184 187 202 211 212 217 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 03:25:35 15 Feb 2017 UTC: INFO: QC.py(365): Changed (11/522) 2 3 168 171 183 184 187 202 211 212 217 to QC_INTERPOLATED because temperature spikes 03:25:35 15 Feb 2017 UTC: INFO: QC.py(377): Changed (1/522) 522 to QC_BAD because salinity below bound 03:25:35 15 Feb 2017 UTC: INFO: QC.py(408): Changed (8/522) 168 171 183 184 202 211 212 217 to QC_INTERPOLATED because conductivity spikes 03:25:35 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/522) 194:199 to QC_BAD because slow apogee CT flow 03:25:35 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/522) 1:6 to QC_BAD because prior to dive start 03:25:35 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/522) 1:6 194:199 522 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:25:35 15 Feb 2017 UTC: INFO: QC.py(180): Changed (13/522) 1:6 194:199 522 to QC_BAD because changed corrected salin implies changed speed 03:25:35 15 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 03:25:35 15 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 186 interp_salinity data_points in_between 295 298 % suspect thermal-inertia points 295 03:25:35 15 Feb 2017 UTC: INFO: QC.py(180): Changed (9/522) 168 171 183 184 187 202 211 212 217 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 03:25:35 15 Feb 2017 UTC: INFO: QC.py(180): Changed (9/522) 168 171 183 184 187 202 211 212 217 to QC_INTERPOLATED because changed corrected temp implies changed speed 03:25:35 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.68 cm/s 03:25:35 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.30 cm/s 03:25:35 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:25:35 15 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (147/522) 107:110 112:115 117:120 122:125 127:130 132:135 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:25:35 15 Feb 2017 UTC: INFO: QC.py(180): Changed (4/522) 2 3 171 211 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:25:35 15 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (147/522) 107:110 112:115 117:120 122:125 127:130 132:135 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 03:25:35 15 Feb 2017 UTC: INFO: QC.py(180): Changed (4/522) 2 3 171 211 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 03:25:35 15 Feb 2017 UTC: INFO: QC.py(180): Changed (13/522) 1:6 194:199 522 to QC_BAD because changed salinity implies changed optode oxygen 03:25:35 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:25:35 15 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:25:35 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 03:25:36 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 186: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.49% reduction 03:25:36 15 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.186 03:25:36 15 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:25:36 15 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:25:36 15 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:25:36 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 03:25:36 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 03:26:59 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 03:27:00 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 03:27:00 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 03:27:15 15 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:27:15 15 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:27:15 15 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:27:15 15 Feb 2017 UTC /home/sg626/p6260186.log /home/sg626/p6260186.eng /home/sg626/p6260186.asc /home/sg626/p6260186.pro /home/sg626/p6260186.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 03:27:15 15 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:27:15 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:27:15 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:27:15 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:27:15 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:27:15 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:27:15 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:27:15 15 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:27:15 15 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:27:15 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:27:15 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:27:15 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:27:15 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:27:15 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:27:15 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:27:15 15 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:27:15 15 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:27:15 15 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:27:15 15 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:27:15 15 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:27:15 15 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:27:15 15 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:27:15 15 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:27:15 15 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 03:27:15 15 Feb 2017 UTC 06:15:51 15 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 14401 06:15:51 15 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:18:25 15 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 14521 06:18:25 15 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:18:25 15 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 06:18:25 15 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 06:18:25 15 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:18:25 15 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170214201825 ] 06:18:25 15 Feb 2017 UTC: INFO: Base.py(1333): PID:14528 06:18:25 15 Feb 2017 UTC: INFO: Base.py(1375): Started processing 06:18:25 15 Feb 2017 UTC 06:18:25 15 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 06:18:26 15 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 06:18:26 15 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:18:26 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:18:26 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:187 calls_made:1 call_cycle:0 06:18:26 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:18:26 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:187 calls_made:1 call_cycle:0 06:18:26 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:18:26 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:187 calls_made:1 call_cycle:0 06:18:26 15 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:187 calls_made:1 call_cycle:0 2322.6470 -15706.3670 02/15/17 06:13:55 UTC) to sdrifter@soest.hawaii.edu 06:18:26 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:187 calls_made:1 call_cycle:0 06:18:26 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:18:26 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:187 calls_made:1 call_cycle:0 06:18:26 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:18:26 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:187 calls_made:1 call_cycle:0 06:18:26 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:18:26 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:187 calls_made:1 call_cycle:0 06:18:26 15 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:18:26 15 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:18:30 15 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:18:30 15 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:18:30 15 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 06:18:30 15 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:18:30 15 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:18:30 15 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 06:18:31 15 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0187lz 06:18:31 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0187lz.x00 06:18:31 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0187lz.x01 06:18:31 15 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0187lz.r in process_file_group 06:18:31 15 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260187.log 06:18:31 15 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 06:18:31 15 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0187dz 06:18:31 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0187dz.x00 06:18:31 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0187dz.x01 06:18:31 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0187dz.x02 06:18:31 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0187dz.x03 06:18:31 15 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0187dz.r in process_file_group 06:18:31 15 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [187] 06:18:31 15 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [187] 06:18:31 15 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260187) for profiles 06:18:31 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 06:18:31 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/530) 530 to QC_BAD because CT out of water 06:18:31 15 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.004m) 06:18:31 15 Feb 2017 UTC: INFO: QC.py(365): Changed (14/530) 2 158 163 164 174 178 180:182 199:201 205 217 to QC_PROBABLY_BAD because raw temperature spikes 06:18:31 15 Feb 2017 UTC: INFO: QC.py(408): Changed (11/530) 161 163 164 174 180:182 199:201 205 to QC_PROBABLY_BAD because raw conductivity spikes 06:18:31 15 Feb 2017 UTC: INFO: QC.py(180): Changed (14/530) 2 158 163 164 174 178 180:182 199:201 205 217 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 06:18:31 15 Feb 2017 UTC: INFO: QC.py(180): Changed (1/530) 161 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 06:18:31 15 Feb 2017 UTC: INFO: QC.py(180): Changed (1/530) 530 to QC_BAD because changed raw cond implies changed raw salinity 06:18:31 15 Feb 2017 UTC: INFO: QC.py(365): Changed (14/530) 2 158 163 164 174 178 180:182 199:201 205 217 to QC_INTERPOLATED because temperature spikes 06:18:31 15 Feb 2017 UTC: INFO: QC.py(408): Changed (11/530) 161 163 164 174 180:182 199:201 205 to QC_INTERPOLATED because conductivity spikes 06:18:31 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/530) 191:196 to QC_BAD because slow apogee CT flow 06:18:31 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/530) 1:6 to QC_BAD because prior to dive start 06:18:31 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/530) 1:6 191:196 530 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 06:18:31 15 Feb 2017 UTC: INFO: QC.py(180): Changed (13/530) 1:6 191:196 530 to QC_BAD because changed corrected salin implies changed speed 06:18:32 15 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 06:18:32 15 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 187 interp_salinity data_points in_between 290 293 % suspect thermal-inertia points 292 06:18:32 15 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 187 interp_salinity data_points in_between 295 309 % suspect thermal-inertia points 302 06:18:32 15 Feb 2017 UTC: INFO: QC.py(180): Changed (13/530) 158 163 164 174 178 180:182 199:201 205 217 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 06:18:32 15 Feb 2017 UTC: INFO: QC.py(180): Changed (1/530) 161 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 06:18:32 15 Feb 2017 UTC: INFO: QC.py(180): Changed (13/530) 158 163 164 174 178 180:182 199:201 205 217 to QC_INTERPOLATED because changed corrected temp implies changed speed 06:18:32 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.38 cm/s 06:18:32 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.05 cm/s 06:18:32 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 06:18:32 15 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (147/530) 104 105 107:110 112:115 117:120 122:125 127:130 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 06:18:32 15 Feb 2017 UTC: INFO: QC.py(180): Changed (3/530) 2 181 201 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 06:18:32 15 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (147/530) 104 105 107:110 112:115 117:120 122:125 127:130 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 06:18:32 15 Feb 2017 UTC: INFO: QC.py(180): Changed (3/530) 2 181 201 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 06:18:32 15 Feb 2017 UTC: INFO: QC.py(180): Changed (13/530) 1:6 191:196 530 to QC_BAD because changed salinity implies changed optode oxygen 06:18:32 15 Feb 2017 UTC: INFO: QC.py(180): Changed (1/530) 161 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 06:18:32 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 06:18:32 15 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 06:18:32 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 06:18:32 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 187: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.45% reduction 06:18:32 15 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.187 06:18:32 15 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:18:32 15 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:18:32 15 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:18:32 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 06:18:32 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 06:19:56 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 06:19:57 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 06:19:57 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 06:20:12 15 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:20:12 15 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:20:12 15 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 06:20:12 15 Feb 2017 UTC /home/sg626/p6260187.log /home/sg626/p6260187.eng /home/sg626/p6260187.asc /home/sg626/p6260187.pro /home/sg626/p6260187.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 06:20:12 15 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:20:12 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:20:12 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:20:12 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:20:12 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:20:12 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:20:12 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:20:12 15 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:20:12 15 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:20:12 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:20:12 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:20:12 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:20:12 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:20:12 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:20:12 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:20:12 15 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:20:12 15 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 06:20:12 15 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 06:20:12 15 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 06:20:12 15 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 06:20:12 15 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:20:12 15 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:20:12 15 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:20:12 15 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 06:20:12 15 Feb 2017 UTC 09:15:03 15 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 19552 09:15:03 15 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:17:37 15 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 19667 09:17:37 15 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:17:37 15 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:17:37 15 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:17:37 15 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:17:37 15 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170214231736 ] 09:17:37 15 Feb 2017 UTC: INFO: Base.py(1333): PID:19674 09:17:37 15 Feb 2017 UTC: INFO: Base.py(1375): Started processing 09:17:37 15 Feb 2017 UTC 09:17:37 15 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:17:38 15 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:17:38 15 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:17:38 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:17:38 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:188 calls_made:1 call_cycle:0 09:17:38 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:17:38 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:188 calls_made:1 call_cycle:0 09:17:38 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:17:38 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:188 calls_made:1 call_cycle:0 09:17:38 15 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:188 calls_made:1 call_cycle:0 2322.2380 -15707.5940 02/15/17 09:12:59 UTC) to sdrifter@soest.hawaii.edu 09:17:38 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:188 calls_made:1 call_cycle:0 09:17:38 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:17:38 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:188 calls_made:1 call_cycle:0 09:17:38 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:17:38 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:188 calls_made:1 call_cycle:0 09:17:38 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:17:38 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:188 calls_made:1 call_cycle:0 09:17:38 15 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:17:38 15 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:17:41 15 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:17:42 15 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:17:42 15 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:17:42 15 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:17:42 15 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:17:42 15 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:17:42 15 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0188lz 09:17:42 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0188lz.x00 09:17:42 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0188lz.x01 09:17:42 15 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0188lz.r in process_file_group 09:17:42 15 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260188.log 09:17:42 15 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:17:42 15 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0188dz 09:17:42 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0188dz.x00 09:17:42 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0188dz.x01 09:17:42 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0188dz.x02 09:17:42 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0188dz.x03 09:17:42 15 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0188dz.r in process_file_group 09:17:43 15 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [188] 09:17:43 15 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [188] 09:17:43 15 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260188) for profiles 09:17:43 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 09:17:43 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/519) 518 to QC_BAD because CT out of water 09:17:43 15 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.131m) 09:17:43 15 Feb 2017 UTC: INFO: QC.py(365): Changed (12/519) 3 163 165 177 185 187 188 201 211 212 228 518 to QC_PROBABLY_BAD because raw temperature spikes 09:17:43 15 Feb 2017 UTC: INFO: QC.py(377): Changed (1/519) 518 to QC_BAD because raw salinity below bound 09:17:43 15 Feb 2017 UTC: INFO: QC.py(408): Changed (8/519) 163 165 177 185 187 188 191 228 to QC_PROBABLY_BAD because raw conductivity spikes 09:17:43 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/519) 519 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 09:17:43 15 Feb 2017 UTC: INFO: QC.py(180): Changed (11/519) 3 163 165 177 185 187 188 201 211 212 228 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 09:17:43 15 Feb 2017 UTC: INFO: QC.py(180): Changed (1/519) 191 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 09:17:43 15 Feb 2017 UTC: INFO: QC.py(180): Changed (1/519) 519 to QC_BAD because changed raw cond implies changed raw salinity 09:17:43 15 Feb 2017 UTC: INFO: QC.py(365): Changed (12/519) 3 163 165 177 185 187 188 201 211 212 228 518 to QC_INTERPOLATED because temperature spikes 09:17:43 15 Feb 2017 UTC: INFO: QC.py(377): Changed (1/519) 518 to QC_BAD because salinity below bound 09:17:43 15 Feb 2017 UTC: INFO: QC.py(408): Changed (8/519) 163 165 177 185 187 188 191 228 to QC_INTERPOLATED because conductivity spikes 09:17:43 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/519) 519 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 09:17:43 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/519) 200:204 to QC_BAD because slow apogee CT flow 09:17:43 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/519) 1:6 to QC_BAD because prior to dive start 09:17:43 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/519) 1:6 200:204 518 519 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:17:43 15 Feb 2017 UTC: INFO: QC.py(180): Changed (13/519) 1:6 200:204 518 519 to QC_BAD because changed corrected salin implies changed speed 09:17:43 15 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:17:43 15 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 188 interp_salinity data_points in_between 251 303 % suspect thermal-inertia points 292 293 09:17:43 15 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 188 interp_salinity data_points in_between 315 328 % suspect thermal-inertia points 316:318 09:17:43 15 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 188 interp_salinity data_points in_between 330 334 % suspect thermal-inertia points 331 09:17:44 15 Feb 2017 UTC: INFO: QC.py(180): Changed (9/519) 163 165 177 185 187 188 211 212 228 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 09:17:44 15 Feb 2017 UTC: INFO: QC.py(180): Changed (1/519) 191 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 09:17:44 15 Feb 2017 UTC: INFO: QC.py(180): Changed (9/519) 163 165 177 185 187 188 211 212 228 to QC_INTERPOLATED because changed corrected temp implies changed speed 09:17:44 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.22 cm/s 09:17:44 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.53 cm/s 09:17:44 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:17:44 15 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (155/519) 108:110 112:115 117:120 122:125 127:130 132:135 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:17:44 15 Feb 2017 UTC: INFO: QC.py(180): Changed (4/519) 3 201 211 518 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:17:44 15 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (155/519) 108:110 112:115 117:120 122:125 127:130 132:135 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 09:17:44 15 Feb 2017 UTC: INFO: QC.py(180): Changed (4/519) 3 201 211 518 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:17:44 15 Feb 2017 UTC: INFO: QC.py(180): Changed (13/519) 1:6 200:204 518 519 to QC_BAD because changed salinity implies changed optode oxygen 09:17:44 15 Feb 2017 UTC: INFO: QC.py(180): Changed (1/519) 191 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 09:17:44 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:17:44 15 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:17:44 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 09:17:44 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 188: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.50% reduction 09:17:44 15 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.188 09:17:44 15 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:17:44 15 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:17:44 15 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:17:44 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 09:17:44 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 09:19:09 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 09:19:09 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 09:19:09 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 09:19:25 15 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:19:25 15 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:19:25 15 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:19:25 15 Feb 2017 UTC /home/sg626/p6260188.log /home/sg626/p6260188.eng /home/sg626/p6260188.asc /home/sg626/p6260188.pro /home/sg626/p6260188.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 09:19:25 15 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:19:25 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:19:25 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:19:25 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:19:25 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:19:25 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:19:25 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:19:25 15 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:19:25 15 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:19:25 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:19:25 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:19:25 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:19:25 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:19:25 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:19:25 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:19:25 15 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:19:25 15 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:19:25 15 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:19:25 15 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:19:25 15 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:19:25 15 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:19:25 15 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:19:25 15 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:19:25 15 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 09:19:25 15 Feb 2017 UTC 11:57:31 15 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 23887 11:57:31 15 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 11:59:56 15 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 23999 11:59:56 15 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:59:56 15 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 11:59:56 15 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 11:59:56 15 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:59:56 15 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170215015955 ] 11:59:56 15 Feb 2017 UTC: INFO: Base.py(1333): PID:24006 11:59:56 15 Feb 2017 UTC: INFO: Base.py(1375): Started processing 11:59:56 15 Feb 2017 UTC 11:59:56 15 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 11:59:56 15 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 11:59:56 15 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:59:56 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:59:56 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:189 calls_made:1 call_cycle:0 11:59:56 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:59:56 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:189 calls_made:1 call_cycle:0 11:59:56 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:59:56 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:189 calls_made:1 call_cycle:0 11:59:56 15 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:189 calls_made:1 call_cycle:0 2323.0480 -15708.2270 02/15/17 11:55:31 UTC) to sdrifter@soest.hawaii.edu 11:59:56 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:189 calls_made:1 call_cycle:0 11:59:56 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:59:56 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:189 calls_made:1 call_cycle:0 11:59:56 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:59:56 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:189 calls_made:1 call_cycle:0 11:59:56 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:59:56 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:189 calls_made:1 call_cycle:0 11:59:56 15 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:59:56 15 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:00:00 15 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:00:00 15 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:00:00 15 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:00:00 15 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:00:00 15 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:00:00 15 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:00:01 15 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0189lz 12:00:01 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0189lz.x00 12:00:01 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0189lz.x01 12:00:01 15 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0189lz.r in process_file_group 12:00:01 15 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260189.log 12:00:01 15 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:00:01 15 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0189dz 12:00:01 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0189dz.x00 12:00:01 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0189dz.x01 12:00:01 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0189dz.x02 12:00:01 15 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0189dz.r in process_file_group 12:00:01 15 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [189] 12:00:01 15 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [189] 12:00:01 15 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260189) for profiles 12:00:01 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 12:00:01 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (4/455) 452:455 to QC_BAD because CT out of water 12:00:01 15 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.112m) 12:00:01 15 Feb 2017 UTC: INFO: QC.py(365): Changed (17/455) 165 169 172 173 181 182 185 187 188 204:206 208:210 ... to QC_PROBABLY_BAD because raw temperature spikes 12:00:01 15 Feb 2017 UTC: INFO: QC.py(377): Changed (2/455) 454 455 to QC_BAD because raw salinity below bound 12:00:01 15 Feb 2017 UTC: INFO: QC.py(408): Changed (16/455) 165 169 172 173 181 182 185 187 188 204:206 208:210 ... to QC_PROBABLY_BAD because raw conductivity spikes 12:00:01 15 Feb 2017 UTC: INFO: QC.py(180): Changed (16/455) 165 169 172 173 181 182 185 187 188 204:206 208:210 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 12:00:01 15 Feb 2017 UTC: INFO: QC.py(180): Changed (2/455) 452 453 to QC_BAD because changed raw cond implies changed raw salinity 12:00:01 15 Feb 2017 UTC: INFO: QC.py(365): Changed (17/455) 165 169 172 173 181 182 185 187 188 204:206 208:210 ... to QC_INTERPOLATED because temperature spikes 12:00:01 15 Feb 2017 UTC: INFO: QC.py(377): Changed (2/455) 454 455 to QC_BAD because salinity below bound 12:00:01 15 Feb 2017 UTC: INFO: QC.py(408): Changed (16/455) 165 169 172 173 181 182 185 187 188 204:206 208:210 ... to QC_INTERPOLATED because conductivity spikes 12:00:01 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/455) 196:200 to QC_BAD because slow apogee CT flow 12:00:01 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/455) 1:6 to QC_BAD because prior to dive start 12:00:01 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/455) 451 to QC_BAD because end of climb 12:00:01 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/455) 1:6 196:200 451:455 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:00:02 15 Feb 2017 UTC: INFO: QC.py(180): Changed (16/455) 1:6 196:200 451:455 to QC_BAD because changed corrected salin implies changed speed 12:00:02 15 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:00:02 15 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 189 interp_salinity data_points in_between 236 290 % suspect thermal-inertia points 278 12:00:02 15 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 189 interp_salinity data_points in_between 292 299 % suspect thermal-inertia points 293:296 12:00:02 15 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 189 interp_salinity data_points in_between 305 307 % suspect thermal-inertia points 307 12:00:02 15 Feb 2017 UTC: INFO: QC.py(180): Changed (16/455) 165 169 172 173 181 182 185 187 188 204:206 208:210 ... to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 12:00:02 15 Feb 2017 UTC: INFO: QC.py(180): Changed (16/455) 165 169 172 173 181 182 185 187 188 204:206 208:210 ... to QC_INTERPOLATED because changed corrected temp implies changed speed 12:00:02 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 35.26 cm/s 12:00:02 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.47 cm/s 12:00:02 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:00:02 15 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (141/455) 110 112:115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:00:02 15 Feb 2017 UTC: INFO: QC.py(180): Changed (3/455) 181 206 454 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 12:00:02 15 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (141/455) 110 112:115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 12:00:02 15 Feb 2017 UTC: INFO: QC.py(180): Changed (3/455) 181 206 454 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 12:00:02 15 Feb 2017 UTC: INFO: QC.py(180): Changed (16/455) 1:6 196:200 451:455 to QC_BAD because changed salinity implies changed optode oxygen 12:00:02 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:00:02 15 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:00:02 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 12:00:02 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 189: Data set size for profile, binned and kkyy files reduced by 16 points, a 3.52% reduction 12:00:02 15 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.189 12:00:02 15 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:00:02 15 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:00:02 15 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:00:03 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 12:00:03 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 12:01:27 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 12:01:28 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 12:01:28 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 12:01:43 15 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:01:43 15 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:01:43 15 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 12:01:43 15 Feb 2017 UTC /home/sg626/p6260189.log /home/sg626/p6260189.eng /home/sg626/p6260189.asc /home/sg626/p6260189.pro /home/sg626/p6260189.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 12:01:43 15 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:01:43 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:01:43 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:01:43 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:01:43 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:01:43 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:01:43 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:01:43 15 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:01:43 15 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:01:43 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:01:43 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:01:43 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:01:43 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:01:43 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:01:43 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:01:43 15 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:01:43 15 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 12:01:43 15 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 12:01:43 15 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 12:01:43 15 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 12:01:43 15 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:01:43 15 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:01:43 15 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:01:43 15 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 12:01:43 15 Feb 2017 UTC 14:41:28 15 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 29003 14:41:28 15 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:43:52 15 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 29117 14:43:52 15 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:43:52 15 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 14:43:52 15 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 14:43:52 15 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:43:52 15 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170215044351 ] 14:43:52 15 Feb 2017 UTC: INFO: Base.py(1333): PID:29124 14:43:52 15 Feb 2017 UTC: INFO: Base.py(1375): Started processing 14:43:52 15 Feb 2017 UTC 14:43:52 15 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 14:43:53 15 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 14:43:53 15 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:43:53 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:43:53 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:190 calls_made:1 call_cycle:0 14:43:53 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:43:53 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:190 calls_made:1 call_cycle:0 14:43:53 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:43:53 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:190 calls_made:1 call_cycle:0 14:43:53 15 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:190 calls_made:1 call_cycle:0 2324.1350 -15707.5310 02/15/17 14:39:30 UTC) to sdrifter@soest.hawaii.edu 14:43:53 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:190 calls_made:1 call_cycle:0 14:43:53 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:43:53 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:190 calls_made:1 call_cycle:0 14:43:53 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:43:53 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:190 calls_made:1 call_cycle:0 14:43:53 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:43:53 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:190 calls_made:1 call_cycle:0 14:43:53 15 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:43:53 15 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:43:56 15 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:43:57 15 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:43:57 15 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 14:43:57 15 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:43:57 15 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:43:57 15 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 14:43:57 15 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0190lz 14:43:57 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0190lz.x00 14:43:57 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0190lz.x01 14:43:57 15 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0190lz.r in process_file_group 14:43:57 15 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260190.log 14:43:57 15 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 14:43:57 15 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0190dz 14:43:57 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0190dz.x00 14:43:57 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0190dz.x01 14:43:57 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0190dz.x02 14:43:57 15 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0190dz.r in process_file_group 14:43:58 15 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [190] 14:43:58 15 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [190] 14:43:58 15 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260190) for profiles 14:43:58 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 14:43:58 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/469) 468 to QC_BAD because CT out of water 14:43:58 15 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.266m) 14:43:58 15 Feb 2017 UTC: INFO: QC.py(365): Changed (10/469) 2 4 180 183 188 189 195 203 207 208 to QC_PROBABLY_BAD because raw temperature spikes 14:43:58 15 Feb 2017 UTC: INFO: QC.py(408): Changed (7/469) 172 183 188 189 195 207 208 to QC_PROBABLY_BAD because raw conductivity spikes 14:43:58 15 Feb 2017 UTC: INFO: QC.py(180): Changed (10/469) 2 4 180 183 188 189 195 203 207 208 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:43:58 15 Feb 2017 UTC: INFO: QC.py(180): Changed (1/469) 172 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 14:43:58 15 Feb 2017 UTC: INFO: QC.py(180): Changed (1/469) 468 to QC_BAD because changed raw cond implies changed raw salinity 14:43:58 15 Feb 2017 UTC: INFO: QC.py(365): Changed (10/469) 2 4 180 183 188 189 195 203 207 208 to QC_INTERPOLATED because temperature spikes 14:43:58 15 Feb 2017 UTC: INFO: QC.py(408): Changed (7/469) 172 183 188 189 195 207 208 to QC_INTERPOLATED because conductivity spikes 14:43:58 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/469) 193:198 to QC_BAD because slow apogee CT flow 14:43:58 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/469) 1:6 to QC_BAD because prior to dive start 14:43:58 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/469) 467 469 to QC_BAD because end of climb 14:43:58 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3343): SUGGESTION: 190 interp_conductivity data_points between 111 113 % 13.4m SUSPECT unresolved strong conductivity anomaly 14:43:58 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/469) 1:6 193:198 467:469 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:43:58 15 Feb 2017 UTC: INFO: QC.py(180): Changed (15/469) 1:6 193:198 467:469 to QC_BAD because changed corrected salin implies changed speed 14:43:58 15 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:43:58 15 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 190 interp_salinity data_points in_between 241 284 % suspect thermal-inertia points 271 14:43:58 15 Feb 2017 UTC: INFO: QC.py(180): Changed (7/469) 180 183 188 189 203 207 208 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 14:43:58 15 Feb 2017 UTC: INFO: QC.py(180): Changed (1/469) 172 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 14:43:58 15 Feb 2017 UTC: INFO: QC.py(180): Changed (7/469) 180 183 188 189 203 207 208 to QC_INTERPOLATED because changed corrected temp implies changed speed 14:43:58 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 34.43 cm/s 14:43:58 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.28 cm/s 14:43:58 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:43:58 15 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (141/469) 108:110 112:115 117:120 122:125 127:130 132:135 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:43:58 15 Feb 2017 UTC: INFO: QC.py(180): Changed (2/469) 2 4 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 14:43:58 15 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (141/469) 108:110 112:115 117:120 122:125 127:130 132:135 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 14:43:58 15 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/469) 467 to QC_BAD because bad aa4330 oyxgen 14:43:58 15 Feb 2017 UTC: INFO: QC.py(180): Changed (2/469) 2 4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 14:43:58 15 Feb 2017 UTC: INFO: QC.py(180): Changed (14/469) 1:6 193:198 468 469 to QC_BAD because changed salinity implies changed optode oxygen 14:43:58 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:43:58 15 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:43:59 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 14:43:59 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 190: Data set size for profile, binned and kkyy files reduced by 15 points, a 3.20% reduction 14:43:59 15 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.190 14:43:59 15 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:43:59 15 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:43:59 15 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:43:59 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 14:43:59 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 14:45:24 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 14:45:24 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 14:45:24 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 14:45:40 15 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:45:40 15 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:45:40 15 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:45:40 15 Feb 2017 UTC /home/sg626/p6260190.log /home/sg626/p6260190.eng /home/sg626/p6260190.asc /home/sg626/p6260190.pro /home/sg626/p6260190.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 14:45:40 15 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:45:40 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:45:40 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:45:40 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:45:40 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:45:40 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:45:40 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:45:40 15 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:45:40 15 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:45:40 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:45:40 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:45:40 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:45:40 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:45:40 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:45:40 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:45:40 15 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:45:40 15 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:45:40 15 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:45:40 15 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:45:40 15 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:45:40 15 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:45:40 15 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:45:40 15 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:45:40 15 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 14:45:40 15 Feb 2017 UTC 17:28:54 15 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 1310 17:28:54 15 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:31:40 15 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 1624 17:31:40 15 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:31:40 15 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:31:40 15 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:31:40 15 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:31:40 15 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170215073140 ] 17:31:40 15 Feb 2017 UTC: INFO: Base.py(1333): PID:1631 17:31:40 15 Feb 2017 UTC: INFO: Base.py(1375): Started processing 17:31:40 15 Feb 2017 UTC 17:31:40 15 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:31:41 15 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:31:41 15 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:31:41 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:31:41 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:191 calls_made:1 call_cycle:0 17:31:41 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:31:41 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:191 calls_made:1 call_cycle:0 17:31:41 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:31:41 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:191 calls_made:1 call_cycle:0 17:31:41 15 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:191 calls_made:1 call_cycle:0 2323.8970 -15707.9680 02/15/17 17:26:19 UTC) to sdrifter@soest.hawaii.edu 17:31:41 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:191 calls_made:1 call_cycle:0 17:31:41 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:31:41 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:191 calls_made:1 call_cycle:0 17:31:41 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:31:41 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:191 calls_made:1 call_cycle:0 17:31:41 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:31:41 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:191 calls_made:1 call_cycle:0 17:31:41 15 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:31:41 15 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:31:44 15 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:31:45 15 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:31:45 15 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:31:45 15 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:31:45 15 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:31:45 15 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:31:46 15 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0191lz 17:31:46 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0191lz.x00 17:31:46 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0191lz.x01 17:31:46 15 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0191lz.r in process_file_group 17:31:46 15 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260191.log 17:31:46 15 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:31:46 15 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0191dz 17:31:46 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0191dz.x00 17:31:46 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0191dz.x01 17:31:46 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0191dz.x02 17:31:46 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0191dz.x03 17:31:46 15 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0191dz.r in process_file_group 17:31:46 15 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [191] 17:31:46 15 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [191] 17:31:46 15 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260191) for profiles 17:31:46 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:31:46 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/500) 499 to QC_BAD because CT out of water 17:31:46 15 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.049m) 17:31:46 15 Feb 2017 UTC: INFO: QC.py(365): Changed (8/500) 173 175 178 190 194 198 206 499 to QC_PROBABLY_BAD because raw temperature spikes 17:31:46 15 Feb 2017 UTC: INFO: QC.py(377): Changed (1/500) 499 to QC_BAD because raw salinity below bound 17:31:46 15 Feb 2017 UTC: INFO: QC.py(408): Changed (7/500) 173 175 178 190 194 198 206 to QC_PROBABLY_BAD because raw conductivity spikes 17:31:46 15 Feb 2017 UTC: INFO: QC.py(180): Changed (7/500) 173 175 178 190 194 198 206 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:31:46 15 Feb 2017 UTC: INFO: QC.py(365): Changed (8/500) 173 175 178 190 194 198 206 499 to QC_INTERPOLATED because temperature spikes 17:31:46 15 Feb 2017 UTC: INFO: QC.py(377): Changed (1/500) 499 to QC_BAD because salinity below bound 17:31:46 15 Feb 2017 UTC: INFO: QC.py(408): Changed (7/500) 173 175 178 190 194 198 206 to QC_INTERPOLATED because conductivity spikes 17:31:46 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/500) 192:196 to QC_BAD because slow apogee CT flow 17:31:46 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/500) 1:6 to QC_BAD because prior to dive start 17:31:46 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/500) 500 to QC_BAD because end of climb 17:31:46 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3343): SUGGESTION: 191 interp_conductivity data_points between 112 113 % 7.1m SUSPECT unresolved strong conductivity anomaly 17:31:46 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/500) 1:6 192:196 499 500 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:31:46 15 Feb 2017 UTC: INFO: QC.py(180): Changed (13/500) 1:6 192:196 499 500 to QC_BAD because changed corrected salin implies changed speed 17:31:47 15 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:31:47 15 Feb 2017 UTC: INFO: QC.py(180): Changed (6/500) 173 175 178 190 198 206 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 17:31:47 15 Feb 2017 UTC: INFO: QC.py(180): Changed (6/500) 173 175 178 190 198 206 to QC_INTERPOLATED because changed corrected temp implies changed speed 17:31:47 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.12 cm/s 17:31:47 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.39 cm/s 17:31:47 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:31:47 15 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (142/500) 107:110 112:115 117:120 122:125 127:130 132:135 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:31:47 15 Feb 2017 UTC: INFO: QC.py(180): Changed (2/500) 206 499 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:31:47 15 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (142/500) 107:110 112:115 117:120 122:125 127:130 132:135 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:31:47 15 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/500) 5 to QC_BAD because bad aa4330 oyxgen 17:31:47 15 Feb 2017 UTC: INFO: QC.py(180): Changed (2/500) 206 499 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:31:47 15 Feb 2017 UTC: INFO: QC.py(180): Changed (12/500) 1:4 6 192:196 499 500 to QC_BAD because changed salinity implies changed optode oxygen 17:31:47 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:31:47 15 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:31:47 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:31:47 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 191: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.60% reduction 17:31:47 15 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.191 17:31:47 15 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:31:47 15 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:31:47 15 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:31:47 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:31:47 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:33:13 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 17:33:14 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:33:14 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:33:29 15 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:33:29 15 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:33:29 15 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:33:29 15 Feb 2017 UTC /home/sg626/p6260191.log /home/sg626/p6260191.eng /home/sg626/p6260191.asc /home/sg626/p6260191.pro /home/sg626/p6260191.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:33:29 15 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:33:29 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:33:29 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:33:29 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:33:29 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:33:29 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:33:29 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:33:29 15 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:33:29 15 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:33:29 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:33:29 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:33:29 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:33:29 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:33:29 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:33:29 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:33:29 15 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:33:29 15 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:33:29 15 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:33:29 15 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:33:29 15 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:33:29 15 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:33:29 15 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:33:29 15 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:33:29 15 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 17:33:29 15 Feb 2017 UTC 20:17:41 15 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 6094 20:17:41 15 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:20:16 15 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 6363 20:20:16 15 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:20:16 15 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:20:16 15 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:20:16 15 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:20:16 15 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170215102015 ] 20:20:16 15 Feb 2017 UTC: INFO: Base.py(1333): PID:6370 20:20:16 15 Feb 2017 UTC: INFO: Base.py(1375): Started processing 20:20:16 15 Feb 2017 UTC 20:20:16 15 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:20:17 15 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:20:17 15 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:20:17 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:20:17 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:192 calls_made:1 call_cycle:0 20:20:17 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:20:17 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:192 calls_made:1 call_cycle:0 20:20:17 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:20:17 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:192 calls_made:1 call_cycle:0 20:20:17 15 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:192 calls_made:1 call_cycle:0 2323.3100 -15708.7480 02/15/17 20:15:48 UTC) to sdrifter@soest.hawaii.edu 20:20:17 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:192 calls_made:1 call_cycle:0 20:20:17 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:20:17 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:192 calls_made:1 call_cycle:0 20:20:17 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:20:17 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:192 calls_made:1 call_cycle:0 20:20:17 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:20:17 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:192 calls_made:1 call_cycle:0 20:20:17 15 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:20:17 15 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:20:20 15 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:20:21 15 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:20:21 15 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:20:21 15 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:20:21 15 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:20:21 15 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:20:22 15 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0192lz 20:20:22 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0192lz.x00 20:20:22 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0192lz.x01 20:20:22 15 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0192lz.r in process_file_group 20:20:22 15 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260192.log 20:20:22 15 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:20:22 15 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0192dz 20:20:22 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0192dz.x00 20:20:22 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0192dz.x01 20:20:22 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0192dz.x02 20:20:22 15 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0192dz.r in process_file_group 20:20:22 15 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [192] 20:20:22 15 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [192] 20:20:22 15 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260192) for profiles 20:20:22 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 20:20:22 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/490) 490 to QC_BAD because CT out of water 20:20:22 15 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.005m) 20:20:22 15 Feb 2017 UTC: INFO: QC.py(365): Changed (9/490) 2 3 166 177 185 202 204 213 489 to QC_PROBABLY_BAD because raw temperature spikes 20:20:22 15 Feb 2017 UTC: INFO: QC.py(408): Changed (4/490) 166 177 185 204 to QC_PROBABLY_BAD because raw conductivity spikes 20:20:22 15 Feb 2017 UTC: INFO: QC.py(180): Changed (9/490) 2 3 166 177 185 202 204 213 489 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 20:20:22 15 Feb 2017 UTC: INFO: QC.py(180): Changed (1/490) 490 to QC_BAD because changed raw cond implies changed raw salinity 20:20:22 15 Feb 2017 UTC: INFO: QC.py(365): Changed (9/490) 2 3 166 177 185 202 204 213 489 to QC_INTERPOLATED because temperature spikes 20:20:22 15 Feb 2017 UTC: INFO: QC.py(408): Changed (4/490) 166 177 185 204 to QC_INTERPOLATED because conductivity spikes 20:20:22 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/490) 195:199 to QC_BAD because slow apogee CT flow 20:20:22 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/490) 1:6 to QC_BAD because prior to dive start 20:20:22 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/490) 488 489 to QC_BAD because end of climb 20:20:22 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/490) 1:6 195:199 488:490 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 20:20:22 15 Feb 2017 UTC: INFO: QC.py(180): Changed (14/490) 1:6 195:199 488:490 to QC_BAD because changed corrected salin implies changed speed 20:20:23 15 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 20:20:23 15 Feb 2017 UTC: INFO: QC.py(180): Changed (6/490) 166 177 185 202 204 213 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 20:20:23 15 Feb 2017 UTC: INFO: QC.py(180): Changed (6/490) 166 177 185 202 204 213 to QC_INTERPOLATED because changed corrected temp implies changed speed 20:20:23 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.64 cm/s 20:20:23 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.36 cm/s 20:20:23 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 20:20:23 15 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (146/490) 107:110 112:115 117:120 122:125 127:130 132:135 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 20:20:23 15 Feb 2017 UTC: INFO: QC.py(180): Changed (4/490) 2 3 166 489 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 20:20:23 15 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (146/490) 107:110 112:115 117:120 122:125 127:130 132:135 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 20:20:23 15 Feb 2017 UTC: INFO: QC.py(180): Changed (4/490) 2 3 166 489 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 20:20:23 15 Feb 2017 UTC: INFO: QC.py(180): Changed (14/490) 1:6 195:199 488:490 to QC_BAD because changed salinity implies changed optode oxygen 20:20:23 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 20:20:23 15 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 20:20:23 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 20:20:23 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 192: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.86% reduction 20:20:23 15 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.192 20:20:23 15 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:20:23 15 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:20:23 15 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:20:23 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 20:20:23 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 20:21:49 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 20:21:49 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 20:21:49 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 20:22:05 15 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:22:05 15 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:22:05 15 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:22:05 15 Feb 2017 UTC /home/sg626/p6260192.log /home/sg626/p6260192.eng /home/sg626/p6260192.asc /home/sg626/p6260192.pro /home/sg626/p6260192.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 20:22:05 15 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:22:05 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:22:05 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:22:05 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:22:05 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:22:05 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:22:05 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:22:05 15 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:22:05 15 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:22:05 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:22:05 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:22:05 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:22:05 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:22:05 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:22:05 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:22:05 15 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:22:05 15 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:22:05 15 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:22:05 15 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:22:05 15 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:22:05 15 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:22:05 15 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:22:05 15 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:22:05 15 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 20:22:05 15 Feb 2017 UTC 23:07:15 15 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 10979 23:07:15 15 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 23:09:51 15 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 11093 23:09:51 15 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:09:51 15 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:09:51 15 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:09:51 15 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:09:51 15 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170215130950 ] 23:09:51 15 Feb 2017 UTC: INFO: Base.py(1333): PID:11100 23:09:51 15 Feb 2017 UTC: INFO: Base.py(1375): Started processing 23:09:51 15 Feb 2017 UTC 23:09:51 15 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:09:51 15 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:09:51 15 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:09:51 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:09:51 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:193 calls_made:1 call_cycle:0 23:09:51 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:09:51 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:193 calls_made:1 call_cycle:0 23:09:51 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:09:51 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:193 calls_made:1 call_cycle:0 23:09:51 15 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:193 calls_made:1 call_cycle:0 2323.9730 -15708.9920 02/15/17 23:05:19 UTC) to sdrifter@soest.hawaii.edu 23:09:52 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:193 calls_made:1 call_cycle:0 23:09:52 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:09:52 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:193 calls_made:1 call_cycle:0 23:09:52 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:09:52 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:193 calls_made:1 call_cycle:0 23:09:52 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:09:52 15 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:193 calls_made:1 call_cycle:0 23:09:52 15 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:09:52 15 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:09:55 15 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:09:55 15 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:09:55 15 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:09:55 15 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:09:55 15 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:09:55 15 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:09:56 15 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0193lz 23:09:56 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0193lz.x00 23:09:56 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0193lz.x01 23:09:56 15 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0193lz.r in process_file_group 23:09:56 15 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260193.log 23:09:56 15 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:09:56 15 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0193dz 23:09:56 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0193dz.x00 23:09:56 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0193dz.x01 23:09:56 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0193dz.x02 23:09:56 15 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0193dz.x03 23:09:56 15 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0193dz.r in process_file_group 23:09:56 15 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [193] 23:09:56 15 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [193] 23:09:57 15 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260193) for profiles 23:09:57 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 23:09:57 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/489) 489 to QC_BAD because CT out of water 23:09:57 15 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.044m) 23:09:57 15 Feb 2017 UTC: INFO: QC.py(365): Changed (18/489) 2:4 170 179 180 184 187:189 198 204 205 207 210:212 ... to QC_PROBABLY_BAD because raw temperature spikes 23:09:57 15 Feb 2017 UTC: INFO: QC.py(408): Changed (13/489) 170 180 184 187:189 204 205 207 210:212 218 to QC_PROBABLY_BAD because raw conductivity spikes 23:09:57 15 Feb 2017 UTC: INFO: QC.py(180): Changed (18/489) 2:4 170 179 180 184 187:189 198 204 205 207 210:212 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 23:09:57 15 Feb 2017 UTC: INFO: QC.py(180): Changed (1/489) 489 to QC_BAD because changed raw cond implies changed raw salinity 23:09:57 15 Feb 2017 UTC: INFO: QC.py(365): Changed (18/489) 2:4 170 179 180 184 187:189 198 204 205 207 210:212 ... to QC_INTERPOLATED because temperature spikes 23:09:57 15 Feb 2017 UTC: INFO: QC.py(408): Changed (13/489) 170 180 184 187:189 204 205 207 210:212 218 to QC_INTERPOLATED because conductivity spikes 23:09:57 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/489) 196:200 to QC_BAD because slow apogee CT flow 23:09:57 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/489) 1:6 to QC_BAD because prior to dive start 23:09:57 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/489) 1:6 196:200 489 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 23:09:57 15 Feb 2017 UTC: INFO: QC.py(180): Changed (12/489) 1:6 196:200 489 to QC_BAD because changed corrected salin implies changed speed 23:09:57 15 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 23:09:57 15 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 193 interp_salinity data_points in_between 271 300 % suspect thermal-inertia points 278 23:09:57 15 Feb 2017 UTC: INFO: QC.py(180): Changed (14/489) 170 179 180 184 187:189 204 205 207 210:212 218 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 23:09:57 15 Feb 2017 UTC: INFO: QC.py(180): Changed (14/489) 170 179 180 184 187:189 204 205 207 210:212 218 to QC_INTERPOLATED because changed corrected temp implies changed speed 23:09:57 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 34.05 cm/s 23:09:57 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.44 cm/s 23:09:57 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 23:09:57 15 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (148/489) 108:110 112:115 117:120 122:125 127:130 132:135 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 23:09:57 15 Feb 2017 UTC: INFO: QC.py(180): Changed (4/489) 2:4 211 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 23:09:57 15 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (148/489) 108:110 112:115 117:120 122:125 127:130 132:135 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 23:09:57 15 Feb 2017 UTC: INFO: QC.py(180): Changed (4/489) 2:4 211 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 23:09:57 15 Feb 2017 UTC: INFO: QC.py(180): Changed (12/489) 1:6 196:200 489 to QC_BAD because changed salinity implies changed optode oxygen 23:09:57 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 23:09:57 15 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 23:09:57 15 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 23:09:58 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 193: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.45% reduction 23:09:58 15 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.193 23:09:58 15 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:09:58 15 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:09:58 15 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:09:58 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 23:09:58 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 23:11:23 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 23:11:24 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 23:11:24 15 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 23:11:40 15 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:11:40 15 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:11:40 15 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:11:40 15 Feb 2017 UTC /home/sg626/p6260193.log /home/sg626/p6260193.eng /home/sg626/p6260193.asc /home/sg626/p6260193.pro /home/sg626/p6260193.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 23:11:40 15 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:11:40 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:11:40 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:11:40 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:11:40 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:11:40 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:11:40 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:11:40 15 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:11:40 15 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:11:40 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:11:40 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:11:40 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:11:40 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:11:40 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:11:40 15 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:11:40 15 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:11:40 15 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:11:40 15 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:11:40 15 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:11:40 15 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:11:40 15 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:11:40 15 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:11:40 15 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:11:40 15 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 23:11:40 15 Feb 2017 UTC 01:57:58 16 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 15478 01:57:58 16 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:00:34 16 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 15685 02:00:34 16 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:00:34 16 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:00:34 16 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:00:34 16 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:00:34 16 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170215160033 ] 02:00:34 16 Feb 2017 UTC: INFO: Base.py(1333): PID:15692 02:00:34 16 Feb 2017 UTC: INFO: Base.py(1375): Started processing 02:00:34 16 Feb 2017 UTC 02:00:34 16 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:00:35 16 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:00:35 16 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:00:35 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:00:35 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:194 calls_made:1 call_cycle:0 02:00:35 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:00:35 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:194 calls_made:1 call_cycle:0 02:00:35 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:00:35 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:194 calls_made:1 call_cycle:0 02:00:35 16 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:194 calls_made:1 call_cycle:0 2324.3350 -15709.4330 02/16/17 01:56:00 UTC) to sdrifter@soest.hawaii.edu 02:00:35 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:194 calls_made:1 call_cycle:0 02:00:35 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:00:35 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:194 calls_made:1 call_cycle:0 02:00:35 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:00:35 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:194 calls_made:1 call_cycle:0 02:00:35 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:00:35 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:194 calls_made:1 call_cycle:0 02:00:35 16 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:00:35 16 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:00:38 16 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:00:39 16 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:00:39 16 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:00:39 16 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:00:39 16 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:00:39 16 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:00:40 16 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0194lz 02:00:40 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0194lz.x00 02:00:40 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0194lz.x01 02:00:40 16 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0194lz.r in process_file_group 02:00:40 16 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260194.log 02:00:40 16 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 02:00:40 16 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0194dz 02:00:40 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0194dz.x00 02:00:40 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0194dz.x01 02:00:40 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0194dz.x02 02:00:40 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0194dz.x03 02:00:40 16 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0194dz.r in process_file_group 02:00:40 16 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [194] 02:00:40 16 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [194] 02:00:40 16 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260194) for profiles 02:00:40 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 02:00:40 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/514) 513 514 to QC_BAD because CT out of water 02:00:40 16 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.110m) 02:00:40 16 Feb 2017 UTC: INFO: QC.py(365): Changed (15/514) 3 4 154 172 175 184:186 190 202 208 213 214 222 ... to QC_PROBABLY_BAD because raw temperature spikes 02:00:40 16 Feb 2017 UTC: INFO: QC.py(377): Changed (1/514) 514 to QC_BAD because raw salinity below bound 02:00:40 16 Feb 2017 UTC: INFO: QC.py(408): Changed (13/514) 154 172 175 184:186 190 202 208 213 214 222 223 to QC_PROBABLY_BAD because raw conductivity spikes 02:00:40 16 Feb 2017 UTC: INFO: QC.py(180): Changed (15/514) 3 4 154 172 175 184:186 190 202 208 213 214 222 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:00:40 16 Feb 2017 UTC: INFO: QC.py(180): Changed (1/514) 513 to QC_BAD because changed raw cond implies changed raw salinity 02:00:40 16 Feb 2017 UTC: INFO: QC.py(365): Changed (15/514) 3 4 154 172 175 184:186 190 202 208 213 214 222 ... to QC_INTERPOLATED because temperature spikes 02:00:40 16 Feb 2017 UTC: INFO: QC.py(377): Changed (1/514) 514 to QC_BAD because salinity below bound 02:00:40 16 Feb 2017 UTC: INFO: QC.py(408): Changed (13/514) 154 172 175 184:186 190 202 208 213 214 222 223 to QC_INTERPOLATED because conductivity spikes 02:00:40 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/514) 193:197 to QC_BAD because slow apogee CT flow 02:00:40 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/514) 1:6 to QC_BAD because prior to dive start 02:00:40 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/514) 512 to QC_BAD because end of climb 02:00:40 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/514) 1:6 193:197 512:514 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:00:40 16 Feb 2017 UTC: INFO: QC.py(180): Changed (14/514) 1:6 193:197 512:514 to QC_BAD because changed corrected salin implies changed speed 02:00:41 16 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:00:41 16 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 194 interp_salinity data_points in_between 250 293 % suspect thermal-inertia points 280 290:292 02:00:41 16 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 194 interp_salinity data_points in_between 295 302 % suspect thermal-inertia points 295:297 02:00:41 16 Feb 2017 UTC: INFO: QC.py(180): Changed (13/514) 154 172 175 184:186 190 202 208 213 214 222 223 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 02:00:41 16 Feb 2017 UTC: INFO: QC.py(180): Changed (13/514) 154 172 175 184:186 190 202 208 213 214 222 223 to QC_INTERPOLATED because changed corrected temp implies changed speed 02:00:41 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.52 cm/s 02:00:41 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.31 cm/s 02:00:41 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:00:41 16 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (144/514) 107:110 112:115 117:120 122:125 127:130 132:135 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:00:41 16 Feb 2017 UTC: INFO: QC.py(180): Changed (3/514) 3 4 186 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:00:41 16 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (144/514) 107:110 112:115 117:120 122:125 127:130 132:135 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 02:00:41 16 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/514) 514 to QC_BAD because bad aa4330 oyxgen 02:00:41 16 Feb 2017 UTC: INFO: QC.py(180): Changed (3/514) 3 4 186 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:00:41 16 Feb 2017 UTC: INFO: QC.py(180): Changed (13/514) 1:6 193:197 512 513 to QC_BAD because changed salinity implies changed optode oxygen 02:00:41 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:00:41 16 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:00:41 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 02:00:41 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 194: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.72% reduction 02:00:41 16 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.194 02:00:41 16 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:00:41 16 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:00:41 16 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:00:41 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 02:00:41 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 02:02:09 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 02:02:09 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 02:02:09 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 02:02:25 16 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:02:25 16 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:02:25 16 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:02:25 16 Feb 2017 UTC /home/sg626/p6260194.log /home/sg626/p6260194.eng /home/sg626/p6260194.asc /home/sg626/p6260194.pro /home/sg626/p6260194.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 02:02:25 16 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:02:25 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:02:25 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:02:25 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:02:25 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:02:25 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:02:25 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:02:25 16 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:02:25 16 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:02:25 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:02:25 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:02:25 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:02:25 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:02:25 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:02:25 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:02:25 16 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:02:25 16 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:02:25 16 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:02:25 16 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:02:25 16 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:02:25 16 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:02:25 16 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:02:25 16 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:02:25 16 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 02:02:25 16 Feb 2017 UTC 04:52:32 16 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 20583 04:52:33 16 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:55:15 16 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 20706 04:55:15 16 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:55:15 16 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:55:15 16 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:55:15 16 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:55:15 16 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170215185515 ] 04:55:15 16 Feb 2017 UTC: INFO: Base.py(1333): PID:20713 04:55:15 16 Feb 2017 UTC: INFO: Base.py(1375): Started processing 04:55:15 16 Feb 2017 UTC 04:55:15 16 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:55:16 16 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:55:16 16 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:55:16 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:55:16 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:195 calls_made:1 call_cycle:0 04:55:16 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:55:16 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:195 calls_made:1 call_cycle:0 04:55:16 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:55:16 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:195 calls_made:1 call_cycle:0 04:55:16 16 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:195 calls_made:1 call_cycle:0 2323.9410 -15709.6690 02/16/17 04:50:31 UTC) to sdrifter@soest.hawaii.edu 04:55:16 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:195 calls_made:1 call_cycle:0 04:55:16 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:55:16 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:195 calls_made:1 call_cycle:0 04:55:16 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:55:16 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:195 calls_made:1 call_cycle:0 04:55:16 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:55:16 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:195 calls_made:1 call_cycle:0 04:55:16 16 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:55:16 16 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:55:20 16 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:55:20 16 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:55:20 16 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:55:20 16 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:55:20 16 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:55:20 16 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:55:21 16 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0195lz 04:55:21 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0195lz.x00 04:55:21 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0195lz.x01 04:55:21 16 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0195lz.r in process_file_group 04:55:21 16 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260195.log 04:55:21 16 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:55:21 16 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0195dz 04:55:21 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0195dz.x00 04:55:21 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0195dz.x01 04:55:21 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0195dz.x02 04:55:21 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0195dz.x03 04:55:21 16 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0195dz.r in process_file_group 04:55:21 16 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [195] 04:55:21 16 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [195] 04:55:21 16 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260195) for profiles 04:55:21 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 04:55:21 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/536) 535 536 to QC_BAD because CT out of water 04:55:21 16 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.012m) 04:55:21 16 Feb 2017 UTC: INFO: QC.py(365): Changed (14/536) 2 3 159 161 167 175 178 206 207 212:214 222 535 to QC_PROBABLY_BAD because raw temperature spikes 04:55:21 16 Feb 2017 UTC: INFO: QC.py(408): Changed (11/536) 2 159 161 175 178 206 207 212:214 222 to QC_PROBABLY_BAD because raw conductivity spikes 04:55:21 16 Feb 2017 UTC: INFO: QC.py(180): Changed (14/536) 2 3 159 161 167 175 178 206 207 212:214 222 535 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:55:21 16 Feb 2017 UTC: INFO: QC.py(180): Changed (2/536) 535 536 to QC_BAD because changed raw cond implies changed raw salinity 04:55:21 16 Feb 2017 UTC: INFO: QC.py(365): Changed (14/536) 2 3 159 161 167 175 178 206 207 212:214 222 535 to QC_INTERPOLATED because temperature spikes 04:55:21 16 Feb 2017 UTC: INFO: QC.py(408): Changed (11/536) 2 159 161 175 178 206 207 212:214 222 to QC_INTERPOLATED because conductivity spikes 04:55:21 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/536) 197:201 to QC_BAD because slow apogee CT flow 04:55:21 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/536) 1:6 to QC_BAD because prior to dive start 04:55:22 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/536) 1:6 197:201 535 536 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:55:22 16 Feb 2017 UTC: INFO: QC.py(180): Changed (13/536) 1:6 197:201 535 536 to QC_BAD because changed corrected salin implies changed speed 04:55:22 16 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:55:22 16 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 195 interp_salinity data_points in_between 98 134 % suspect thermal-inertia points 104 105 04:55:22 16 Feb 2017 UTC: INFO: QC.py(180): Changed (11/536) 159 161 167 175 178 206 207 212:214 222 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 04:55:22 16 Feb 2017 UTC: INFO: QC.py(180): Changed (11/536) 159 161 167 175 178 206 207 212:214 222 to QC_INTERPOLATED because changed corrected temp implies changed speed 04:55:22 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.52 cm/s 04:55:22 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.12 cm/s 04:55:22 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:55:22 16 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (150/536) 107:110 112:115 117:120 122:125 127:130 132:135 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:55:22 16 Feb 2017 UTC: INFO: QC.py(180): Changed (5/536) 2 3 161 206 535 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:55:22 16 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (150/536) 107:110 112:115 117:120 122:125 127:130 132:135 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 04:55:22 16 Feb 2017 UTC: INFO: QC.py(180): Changed (5/536) 2 3 161 206 535 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:55:22 16 Feb 2017 UTC: INFO: QC.py(180): Changed (13/536) 1:6 197:201 535 536 to QC_BAD because changed salinity implies changed optode oxygen 04:55:22 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:55:22 16 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:55:22 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 04:55:22 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 195: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.43% reduction 04:55:22 16 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.195 04:55:22 16 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:55:22 16 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:55:22 16 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:55:23 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 04:55:23 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 04:56:50 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 04:56:50 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 04:56:50 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 04:57:06 16 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:57:06 16 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:57:06 16 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:57:06 16 Feb 2017 UTC /home/sg626/p6260195.log /home/sg626/p6260195.eng /home/sg626/p6260195.asc /home/sg626/p6260195.pro /home/sg626/p6260195.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 04:57:06 16 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:57:06 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:57:06 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:57:06 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:57:06 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:57:06 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:57:06 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:57:06 16 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:57:06 16 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:57:06 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:57:06 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:57:06 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:57:06 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:57:06 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:57:06 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:57:06 16 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:57:06 16 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:57:06 16 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:57:06 16 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:57:06 16 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:57:06 16 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:57:06 16 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:57:06 16 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:57:06 16 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 04:57:06 16 Feb 2017 UTC 07:44:53 16 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 25912 07:44:53 16 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 07:47:48 16 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 26085 07:47:48 16 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:47:48 16 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:47:48 16 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:47:48 16 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:47:48 16 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170215214747 ] 07:47:48 16 Feb 2017 UTC: INFO: Base.py(1333): PID:26092 07:47:48 16 Feb 2017 UTC: INFO: Base.py(1375): Started processing 07:47:48 16 Feb 2017 UTC 07:47:48 16 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:47:49 16 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:47:49 16 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:47:49 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:47:49 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:196 calls_made:1 call_cycle:0 07:47:49 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:47:49 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:196 calls_made:1 call_cycle:0 07:47:49 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:47:49 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:196 calls_made:1 call_cycle:0 07:47:49 16 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:196 calls_made:1 call_cycle:0 2324.0050 -15710.1300 02/16/17 07:42:55 UTC) to sdrifter@soest.hawaii.edu 07:47:49 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:196 calls_made:1 call_cycle:0 07:47:49 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:47:49 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:196 calls_made:1 call_cycle:0 07:47:49 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:47:49 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:196 calls_made:1 call_cycle:0 07:47:49 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:47:49 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:196 calls_made:1 call_cycle:0 07:47:49 16 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:47:49 16 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:47:52 16 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:47:53 16 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:47:53 16 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:47:53 16 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:47:53 16 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:47:53 16 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:47:53 16 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0196lz 07:47:53 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0196lz.x00 07:47:53 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0196lz.x01 07:47:53 16 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0196lz.r in process_file_group 07:47:53 16 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260196.log 07:47:53 16 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:47:53 16 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0196dz 07:47:53 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0196dz.x00 07:47:53 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0196dz.x01 07:47:53 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0196dz.x02 07:47:53 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0196dz.x03 07:47:53 16 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0196dz.r in process_file_group 07:47:54 16 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [196] 07:47:54 16 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [196] 07:47:54 16 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260196) for profiles 07:47:54 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 07:47:54 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/528) 527 528 to QC_BAD because CT out of water 07:47:54 16 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.078m) 07:47:54 16 Feb 2017 UTC: INFO: QC.py(365): Changed (5/528) 184 186 187 194 527 to QC_PROBABLY_BAD because raw temperature spikes 07:47:54 16 Feb 2017 UTC: INFO: QC.py(377): Changed (2/528) 527 528 to QC_BAD because raw salinity below bound 07:47:54 16 Feb 2017 UTC: INFO: QC.py(408): Changed (2/528) 184 194 to QC_PROBABLY_BAD because raw conductivity spikes 07:47:54 16 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(963): Restarting anomaly after 27.58m: -0.2566 at 257.85m (113) 07:47:54 16 Feb 2017 UTC: INFO: QC.py(180): Changed (4/528) 184 186 187 194 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:47:54 16 Feb 2017 UTC: INFO: QC.py(365): Changed (5/528) 184 186 187 194 527 to QC_INTERPOLATED because temperature spikes 07:47:54 16 Feb 2017 UTC: INFO: QC.py(377): Changed (2/528) 527 528 to QC_BAD because salinity below bound 07:47:54 16 Feb 2017 UTC: INFO: QC.py(408): Changed (2/528) 184 194 to QC_INTERPOLATED because conductivity spikes 07:47:54 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/528) 192:196 to QC_BAD because slow apogee CT flow 07:47:54 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/528) 1:6 to QC_BAD because prior to dive start 07:47:54 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/528) 526 to QC_BAD because end of climb 07:47:54 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/528) 1:6 192:196 526:528 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:47:54 16 Feb 2017 UTC: INFO: QC.py(180): Changed (14/528) 1:6 192:196 526:528 to QC_BAD because changed corrected salin implies changed speed 07:47:55 16 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:47:55 16 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 196 interp_salinity data_points in_between 292 299 % suspect thermal-inertia points 293 295 07:47:55 16 Feb 2017 UTC: INFO: QC.py(180): Changed (3/528) 184 186 187 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 07:47:55 16 Feb 2017 UTC: INFO: QC.py(180): Changed (3/528) 184 186 187 to QC_INTERPOLATED because changed corrected temp implies changed speed 07:47:55 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.39 cm/s 07:47:55 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.56 cm/s 07:47:55 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:47:55 16 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (145/528) 107:110 112:115 117:120 122:125 127:130 132:135 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:47:55 16 Feb 2017 UTC: INFO: QC.py(180): Changed (2/528) 186 527 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:47:55 16 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (145/528) 107:110 112:115 117:120 122:125 127:130 132:135 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 07:47:55 16 Feb 2017 UTC: INFO: QC.py(180): Changed (2/528) 186 527 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:47:55 16 Feb 2017 UTC: INFO: QC.py(180): Changed (14/528) 1:6 192:196 526:528 to QC_BAD because changed salinity implies changed optode oxygen 07:47:55 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:47:55 16 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:47:55 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 07:47:55 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 196: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.65% reduction 07:47:55 16 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.196 07:47:55 16 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.196 07:47:55 16 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:47:55 16 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:47:55 16 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:47:55 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 07:47:55 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:49:23 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 07:49:24 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:49:24 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:49:40 16 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:49:40 16 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:49:40 16 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:49:40 16 Feb 2017 UTC /home/sg626/p6260196.log /home/sg626/p6260196.eng /home/sg626/p6260196.asc /home/sg626/p6260196.pro /home/sg626/p6260196.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:49:40 16 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:49:40 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:49:40 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:49:40 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:49:40 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:49:40 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:49:40 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:49:40 16 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:49:40 16 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:49:40 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:49:40 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:49:40 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:49:40 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:49:40 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:49:40 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:49:40 16 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:49:40 16 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:49:40 16 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:49:40 16 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:49:40 16 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:49:40 16 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:49:40 16 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:49:40 16 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:49:40 16 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 07:49:40 16 Feb 2017 UTC 10:45:57 16 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 1886 10:45:57 16 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:47:37 16 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 2014 10:47:37 16 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:47:37 16 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:47:37 16 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:47:37 16 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:47:37 16 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170216004736 ] 10:47:37 16 Feb 2017 UTC: INFO: Base.py(1333): PID:2021 10:47:37 16 Feb 2017 UTC: INFO: Base.py(1375): Started processing 10:47:37 16 Feb 2017 UTC 10:47:37 16 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:47:37 16 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:47:37 16 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:47:37 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:47:37 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:197 calls_made:1 call_cycle:0 10:47:37 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:47:37 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:197 calls_made:1 call_cycle:0 10:47:37 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:47:37 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:197 calls_made:1 call_cycle:0 10:47:37 16 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:197 calls_made:1 call_cycle:0 2324.4480 -15708.9330 02/16/17 10:44:00 UTC) to sdrifter@soest.hawaii.edu 10:47:37 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:197 calls_made:1 call_cycle:0 10:47:37 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:47:37 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:197 calls_made:1 call_cycle:0 10:47:37 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:47:37 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:197 calls_made:1 call_cycle:0 10:47:37 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:47:37 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:197 calls_made:1 call_cycle:0 10:47:37 16 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:47:37 16 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:47:41 16 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:47:41 16 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:47:41 16 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:47:41 16 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:47:41 16 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:47:41 16 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:47:42 16 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0197lz 10:47:42 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0197lz.x00 10:47:42 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0197lz.x01 10:47:42 16 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0197lz.r in process_file_group 10:47:42 16 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260197.log 10:47:42 16 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:47:42 16 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0197dz 10:47:42 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0197dz.1a.x00 10:47:42 16 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0197dz.r in process_file_group 10:47:42 16 Feb 2017 UTC: ERROR: BaseGZip.py(125): ./sg0197dz.r not a gzipped file 10:47:42 16 Feb 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0197dz.r - skipping 10:47:42 16 Feb 2017 UTC: ERROR: Base.py(272): Could not process sg0197dz - skipping 10:47:42 16 Feb 2017 UTC: WARNING: Base.py(1624): No dives to process 10:47:42 16 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [197] 10:47:42 16 Feb 2017 UTC: INFO: Base.py(1780): No dives found to profile 10:47:42 16 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.197 10:47:42 16 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:47:42 16 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:47:42 16 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:47:42 16 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:47:42 16 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:47:42 16 Feb 2017 UTC: ERROR: Base.py(1960): Dive [197] failed to process completely. The following files were not processed completely: /home/sg626/sg0197dz.r Glider logout not seen - retransmissions from glider possible Consult baselog_170216004736 for details. 10:47:42 16 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 10:47:42 16 Feb 2017 UTC /home/sg626/p6260197.log 10:47:42 16 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:47:42 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:47:42 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:47:42 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:47:42 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:47:42 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:47:42 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:47:42 16 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:47:42 16 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:47:42 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:47:42 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:47:42 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:47:42 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:47:42 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:47:42 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:47:42 16 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:47:42 16 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:47:42 16 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:47:42 16 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:47:42 16 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:47:42 16 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:47:42 16 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:47:42 16 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:47:42 16 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 10:47:42 16 Feb 2017 UTC 10:52:09 16 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 2460 10:52:09 16 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:54:19 16 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 2608 10:54:19 16 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:54:19 16 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:54:19 16 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:54:19 16 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:54:19 16 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170216005419 ] 10:54:19 16 Feb 2017 UTC: INFO: Base.py(1333): PID:2615 10:54:19 16 Feb 2017 UTC: INFO: Base.py(1375): Started processing 10:54:19 16 Feb 2017 UTC 10:54:19 16 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:54:20 16 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:54:20 16 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:54:20 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:54:20 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:197 calls_made:3 call_cycle:0 10:54:20 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:54:20 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:197 calls_made:3 call_cycle:0 10:54:20 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:54:20 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:197 calls_made:3 call_cycle:0 10:54:20 16 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:197 calls_made:3 call_cycle:0 2324.4480 -15708.9330 02/16/17 10:44:00 UTC) to sdrifter@soest.hawaii.edu 10:54:20 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:197 calls_made:3 call_cycle:0 10:54:20 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:54:20 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:197 calls_made:3 call_cycle:0 10:54:20 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:54:20 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:197 calls_made:3 call_cycle:0 10:54:20 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:54:20 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:197 calls_made:3 call_cycle:0 10:54:20 16 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:54:20 16 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:54:24 16 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:54:24 16 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:54:24 16 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:54:24 16 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:54:24 16 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:54:24 16 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:54:25 16 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:54:25 16 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0197dz 10:54:25 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0197dz.x00 10:54:25 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0197dz.x01 10:54:25 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0197dz.x02 10:54:25 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0197dz.x03 10:54:25 16 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0197dz.r in process_file_group 10:54:25 16 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [197] 10:54:25 16 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [197] 10:54:25 16 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260197) for profiles 10:54:25 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 10:54:25 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/505) 505 to QC_BAD because CT out of water 10:54:25 16 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.048m) 10:54:25 16 Feb 2017 UTC: INFO: QC.py(365): Changed (8/505) 175 185 186 213 214 224 225 230 to QC_PROBABLY_BAD because raw temperature spikes 10:54:25 16 Feb 2017 UTC: INFO: QC.py(377): Changed (1/505) 505 to QC_BAD because raw salinity below bound 10:54:25 16 Feb 2017 UTC: INFO: QC.py(408): Changed (7/505) 4 175 214 224 225 230 231 to QC_PROBABLY_BAD because raw conductivity spikes 10:54:25 16 Feb 2017 UTC: INFO: QC.py(180): Changed (8/505) 175 185 186 213 214 224 225 230 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 10:54:25 16 Feb 2017 UTC: INFO: QC.py(180): Changed (2/505) 4 231 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 10:54:25 16 Feb 2017 UTC: INFO: QC.py(365): Changed (8/505) 175 185 186 213 214 224 225 230 to QC_INTERPOLATED because temperature spikes 10:54:25 16 Feb 2017 UTC: INFO: QC.py(377): Changed (1/505) 505 to QC_BAD because salinity below bound 10:54:25 16 Feb 2017 UTC: INFO: QC.py(408): Changed (7/505) 4 175 214 224 225 230 231 to QC_INTERPOLATED because conductivity spikes 10:54:25 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/505) 212:216 to QC_BAD because slow apogee CT flow 10:54:25 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/505) 1:6 to QC_BAD because prior to dive start 10:54:25 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/505) 1:6 212:216 505 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:54:25 16 Feb 2017 UTC: INFO: QC.py(180): Changed (12/505) 1:6 212:216 505 to QC_BAD because changed corrected salin implies changed speed 10:54:26 16 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 10:54:26 16 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 197 interp_salinity data_points in_between 322 332 % suspect thermal-inertia points 329 10:54:26 16 Feb 2017 UTC: INFO: QC.py(180): Changed (6/505) 175 185 186 224 225 230 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 10:54:26 16 Feb 2017 UTC: INFO: QC.py(180): Changed (1/505) 231 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 10:54:26 16 Feb 2017 UTC: INFO: QC.py(180): Changed (6/505) 175 185 186 224 225 230 to QC_INTERPOLATED because changed corrected temp implies changed speed 10:54:26 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 34.11 cm/s 10:54:26 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.95 cm/s 10:54:26 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:54:26 16 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/505) 114 115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:54:26 16 Feb 2017 UTC: INFO: QC.py(180): Changed (1/505) 186 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 10:54:26 16 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/505) 114 115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 10:54:26 16 Feb 2017 UTC: INFO: QC.py(180): Changed (1/505) 186 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 10:54:26 16 Feb 2017 UTC: INFO: QC.py(180): Changed (12/505) 1:6 212:216 505 to QC_BAD because changed salinity implies changed optode oxygen 10:54:26 16 Feb 2017 UTC: INFO: QC.py(180): Changed (1/505) 231 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 10:54:26 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:54:26 16 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:54:26 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 10:54:26 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 197: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.38% reduction 10:54:26 16 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.197 10:54:26 16 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:54:26 16 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:54:26 16 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:54:26 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 10:54:26 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 10:55:56 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 10:55:57 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 10:55:57 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 10:56:13 16 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:56:13 16 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:56:13 16 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 10:56:13 16 Feb 2017 UTC /home/sg626/p6260197.eng /home/sg626/p6260197.asc /home/sg626/p6260197.pro /home/sg626/p6260197.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 10:56:13 16 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:56:13 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:56:13 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:56:13 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:56:13 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:56:13 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:56:13 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:56:13 16 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:56:13 16 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:56:13 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:56:13 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:56:13 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:56:13 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:56:13 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:56:13 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:56:13 16 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:56:13 16 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:56:13 16 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:56:13 16 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:56:13 16 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:56:13 16 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:56:13 16 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:56:13 16 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:56:13 16 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 10:56:13 16 Feb 2017 UTC 13:57:05 16 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 9906 13:57:05 16 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:59:46 16 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 10014 13:59:46 16 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:59:46 16 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:59:46 16 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:59:46 16 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:59:46 16 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170216035945 ] 13:59:46 16 Feb 2017 UTC: INFO: Base.py(1333): PID:10022 13:59:46 16 Feb 2017 UTC: INFO: Base.py(1375): Started processing 13:59:46 16 Feb 2017 UTC 13:59:46 16 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:59:46 16 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:59:46 16 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:59:46 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:59:46 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:198 calls_made:1 call_cycle:0 13:59:46 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:59:46 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:198 calls_made:1 call_cycle:0 13:59:46 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:59:46 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:198 calls_made:1 call_cycle:0 13:59:47 16 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:198 calls_made:1 call_cycle:0 2325.1330 -15707.3020 02/16/17 13:55:07 UTC) to sdrifter@soest.hawaii.edu 13:59:47 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:198 calls_made:1 call_cycle:0 13:59:47 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:59:47 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:198 calls_made:1 call_cycle:0 13:59:47 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:59:47 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:198 calls_made:1 call_cycle:0 13:59:47 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:59:47 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:198 calls_made:1 call_cycle:0 13:59:47 16 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:59:47 16 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:59:50 16 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:59:51 16 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:59:51 16 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:59:51 16 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:59:51 16 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:59:51 16 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:59:51 16 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0198lz 13:59:51 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0198lz.x00 13:59:51 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0198lz.x01 13:59:51 16 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0198lz.r in process_file_group 13:59:51 16 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260198.log 13:59:51 16 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:59:51 16 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0198dz 13:59:51 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0198dz.x00 13:59:51 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0198dz.x01 13:59:51 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0198dz.x02 13:59:51 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0198dz.x03 13:59:51 16 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0198dz.r in process_file_group 13:59:52 16 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [198] 13:59:52 16 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [198] 13:59:52 16 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260198) for profiles 13:59:52 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:59:52 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/547) 546 547 to QC_BAD because CT out of water 13:59:52 16 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.127m) 13:59:52 16 Feb 2017 UTC: INFO: QC.py(365): Changed (9/547) 2 3 172 183 192 207 221 222 236 to QC_PROBABLY_BAD because raw temperature spikes 13:59:52 16 Feb 2017 UTC: INFO: QC.py(377): Changed (1/547) 547 to QC_BAD because raw salinity below bound 13:59:52 16 Feb 2017 UTC: INFO: QC.py(408): Changed (11/547) 172 183 192 203 207 221 222 236 246 247 249 to QC_PROBABLY_BAD because raw conductivity spikes 13:59:52 16 Feb 2017 UTC: INFO: QC.py(180): Changed (9/547) 2 3 172 183 192 207 221 222 236 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:59:52 16 Feb 2017 UTC: INFO: QC.py(180): Changed (4/547) 203 246 247 249 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 13:59:52 16 Feb 2017 UTC: INFO: QC.py(180): Changed (1/547) 546 to QC_BAD because changed raw cond implies changed raw salinity 13:59:52 16 Feb 2017 UTC: INFO: QC.py(365): Changed (9/547) 2 3 172 183 192 207 221 222 236 to QC_INTERPOLATED because temperature spikes 13:59:52 16 Feb 2017 UTC: INFO: QC.py(377): Changed (1/547) 547 to QC_BAD because salinity below bound 13:59:52 16 Feb 2017 UTC: INFO: QC.py(408): Changed (11/547) 172 183 192 203 207 221 222 236 246 247 249 to QC_INTERPOLATED because conductivity spikes 13:59:52 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/547) 213:217 to QC_BAD because slow apogee CT flow 13:59:52 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/547) 1:6 to QC_BAD because prior to dive start 13:59:52 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3343): SUGGESTION: 198 bad_conductivity data_points between 120 300 % uncorrectable 904.7m SUSPECT unresolved strong conductivity anomaly 13:59:52 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/547) 1:6 213:217 546 547 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:59:52 16 Feb 2017 UTC: INFO: QC.py(180): Changed (13/547) 1:6 213:217 546 547 to QC_BAD because changed corrected salin implies changed speed 13:59:52 16 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:59:52 16 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 198 interp_salinity data_points in_between 258 319 % suspect thermal-inertia points 299 300 13:59:52 16 Feb 2017 UTC: INFO: QC.py(180): Changed (7/547) 172 183 192 207 221 222 236 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 13:59:52 16 Feb 2017 UTC: INFO: QC.py(180): Changed (4/547) 203 246 247 249 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 13:59:52 16 Feb 2017 UTC: INFO: QC.py(180): Changed (7/547) 172 183 192 207 221 222 236 to QC_INTERPOLATED because changed corrected temp implies changed speed 13:59:52 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.27 cm/s 13:59:52 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.76 cm/s 13:59:52 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:59:52 16 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/547) 115 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:59:52 16 Feb 2017 UTC: INFO: QC.py(180): Changed (4/547) 2 3 221 236 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:59:52 16 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/547) 115 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:59:52 16 Feb 2017 UTC: INFO: QC.py(180): Changed (4/547) 2 3 221 236 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:59:52 16 Feb 2017 UTC: INFO: QC.py(180): Changed (13/547) 1:6 213:217 546 547 to QC_BAD because changed salinity implies changed optode oxygen 13:59:52 16 Feb 2017 UTC: INFO: QC.py(180): Changed (1/547) 246 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 13:59:52 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:59:53 16 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:59:53 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:59:53 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 198: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.38% reduction 13:59:53 16 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.198 13:59:53 16 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:59:53 16 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:59:53 16 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:59:53 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:59:53 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 14:01:22 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 14:01:22 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 14:01:22 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 14:01:39 16 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:01:39 16 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:01:39 16 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:01:39 16 Feb 2017 UTC /home/sg626/p6260198.log /home/sg626/p6260198.eng /home/sg626/p6260198.asc /home/sg626/p6260198.pro /home/sg626/p6260198.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 14:01:39 16 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:01:39 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:01:39 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:01:39 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:01:39 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:01:39 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:01:39 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:01:39 16 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:01:39 16 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:01:39 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:01:39 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:01:39 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:01:39 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:01:39 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:01:39 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:01:39 16 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:01:39 16 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:01:39 16 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:01:39 16 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:01:39 16 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:01:39 16 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:01:39 16 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:01:39 16 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:01:39 16 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 14:01:39 16 Feb 2017 UTC 17:02:35 16 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 15463 17:02:35 16 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:05:12 16 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 15585 17:05:12 16 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:05:12 16 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:05:12 16 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:05:12 16 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:05:12 16 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170216070512 ] 17:05:12 16 Feb 2017 UTC: INFO: Base.py(1333): PID:15593 17:05:12 16 Feb 2017 UTC: INFO: Base.py(1375): Started processing 17:05:12 16 Feb 2017 UTC 17:05:12 16 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:05:13 16 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:05:13 16 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:05:13 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:05:13 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:199 calls_made:1 call_cycle:0 17:05:13 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:05:13 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:199 calls_made:1 call_cycle:0 17:05:13 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:05:13 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:199 calls_made:1 call_cycle:0 17:05:13 16 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:199 calls_made:1 call_cycle:0 2325.7520 -15705.2290 02/16/17 17:00:30 UTC) to sdrifter@soest.hawaii.edu 17:05:13 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:199 calls_made:1 call_cycle:0 17:05:13 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:05:13 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:199 calls_made:1 call_cycle:0 17:05:13 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:05:13 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:199 calls_made:1 call_cycle:0 17:05:13 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:05:13 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:199 calls_made:1 call_cycle:0 17:05:13 16 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:05:13 16 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:05:17 16 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:05:17 16 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:05:17 16 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:05:17 16 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:05:17 16 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:05:17 16 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:05:18 16 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0199lz 17:05:18 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0199lz.x00 17:05:18 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0199lz.x01 17:05:18 16 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0199lz.r in process_file_group 17:05:18 16 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260199.log 17:05:18 16 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:05:18 16 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0199dz 17:05:18 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0199dz.x00 17:05:18 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0199dz.x01 17:05:18 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0199dz.x02 17:05:18 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0199dz.x03 17:05:18 16 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0199dz.r in process_file_group 17:05:18 16 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [199] 17:05:18 16 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [199] 17:05:18 16 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260199) for profiles 17:05:18 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:05:18 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/552) 551 552 to QC_BAD because CT out of water 17:05:18 16 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.101m) 17:05:18 16 Feb 2017 UTC: INFO: QC.py(365): Changed (16/552) 169 172 173 197 198 203 205 206 209 210 214 217 ... to QC_PROBABLY_BAD because raw temperature spikes 17:05:18 16 Feb 2017 UTC: INFO: QC.py(377): Changed (2/552) 551 552 to QC_BAD because raw salinity below bound 17:05:18 16 Feb 2017 UTC: INFO: QC.py(408): Changed (14/552) 169 172 173 196 203 205 206 209 210 217 218 221 ... to QC_PROBABLY_BAD because raw conductivity spikes 17:05:18 16 Feb 2017 UTC: INFO: QC.py(180): Changed (16/552) 169 172 173 197 198 203 205 206 209 210 214 217 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:05:18 16 Feb 2017 UTC: INFO: QC.py(180): Changed (1/552) 196 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 17:05:18 16 Feb 2017 UTC: INFO: QC.py(365): Changed (16/552) 169 172 173 197 198 203 205 206 209 210 214 217 ... to QC_INTERPOLATED because temperature spikes 17:05:18 16 Feb 2017 UTC: INFO: QC.py(377): Changed (2/552) 551 552 to QC_BAD because salinity below bound 17:05:18 16 Feb 2017 UTC: INFO: QC.py(408): Changed (14/552) 169 172 173 196 203 205 206 209 210 217 218 221 ... to QC_INTERPOLATED because conductivity spikes 17:05:18 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/552) 212:217 to QC_BAD because slow apogee CT flow 17:05:18 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/552) 1:6 to QC_BAD because prior to dive start 17:05:18 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/552) 550 to QC_BAD because end of climb 17:05:18 16 Feb 2017 UTC: INFO: QC.py(488): Changed (1/552) 218 to QC_PROBABLY_BAD because bad interpolation anchors 17:05:18 16 Feb 2017 UTC: INFO: QC.py(489): SUGGESTION: 199 bad_conductivity data_points in_between 216 218 % bad interpolation anchors 17:05:18 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3343): SUGGESTION: 199 bad_conductivity data_points between 118 294 % uncorrectable 898.2m SUSPECT unresolved strong conductivity anomaly 17:05:18 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/552) 1:6 212:217 550:552 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:05:18 16 Feb 2017 UTC: INFO: QC.py(180): Changed (15/552) 1:6 212:217 550:552 to QC_BAD because changed corrected salin implies changed speed 17:05:19 16 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:05:19 16 Feb 2017 UTC: INFO: QC.py(180): Changed (14/552) 169 172 173 197 198 203 205 206 209 210 218 221 ... to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 17:05:19 16 Feb 2017 UTC: INFO: QC.py(180): Changed (1/552) 218 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 17:05:19 16 Feb 2017 UTC: INFO: QC.py(180): Changed (1/552) 196 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 17:05:19 16 Feb 2017 UTC: INFO: QC.py(180): Changed (14/552) 169 172 173 197 198 203 205 206 209 210 218 221 ... to QC_INTERPOLATED because changed corrected temp implies changed speed 17:05:19 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.85 cm/s 17:05:19 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.95 cm/s 17:05:19 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:05:19 16 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (159/552) 113:115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:05:19 16 Feb 2017 UTC: INFO: QC.py(180): Changed (3/552) 206 221 226 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:05:19 16 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (159/552) 113:115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:05:19 16 Feb 2017 UTC: INFO: QC.py(180): Changed (3/552) 206 221 226 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:05:19 16 Feb 2017 UTC: INFO: QC.py(180): Changed (15/552) 1:6 212:217 550:552 to QC_BAD because changed salinity implies changed optode oxygen 17:05:19 16 Feb 2017 UTC: INFO: QC.py(180): Changed (1/552) 196 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 17:05:19 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:05:19 16 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:05:19 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:05:19 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 199: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.72% reduction 17:05:19 16 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.199 17:05:19 16 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:05:19 16 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:05:19 16 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:05:19 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:05:19 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:06:50 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 17:06:50 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:06:50 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:07:07 16 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:07:07 16 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:07:07 16 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:07:07 16 Feb 2017 UTC /home/sg626/p6260199.log /home/sg626/p6260199.eng /home/sg626/p6260199.asc /home/sg626/p6260199.pro /home/sg626/p6260199.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:07:07 16 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:07:07 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:07:07 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:07:07 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:07:07 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:07:07 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:07:07 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:07:07 16 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:07:07 16 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:07:07 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:07:07 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:07:07 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:07:07 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:07:07 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:07:07 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:07:07 16 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:07:07 16 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:07:07 16 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:07:07 16 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:07:07 16 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:07:07 16 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:07:07 16 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:07:07 16 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:07:07 16 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 17:07:07 16 Feb 2017 UTC 20:06:14 16 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 20442 20:06:14 16 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:08:50 16 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 20557 20:08:50 16 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:08:50 16 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:08:50 16 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:08:50 16 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:08:50 16 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170216100850 ] 20:08:50 16 Feb 2017 UTC: INFO: Base.py(1333): PID:20565 20:08:50 16 Feb 2017 UTC: INFO: Base.py(1375): Started processing 20:08:50 16 Feb 2017 UTC 20:08:50 16 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:08:51 16 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:08:51 16 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:08:51 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:08:51 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:200 calls_made:1 call_cycle:0 20:08:51 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:08:51 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:200 calls_made:1 call_cycle:0 20:08:51 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:08:51 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:200 calls_made:1 call_cycle:0 20:08:51 16 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:200 calls_made:1 call_cycle:0 2326.0790 -15703.4210 02/16/17 20:04:13 UTC) to sdrifter@soest.hawaii.edu 20:08:51 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:200 calls_made:1 call_cycle:0 20:08:51 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:08:51 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:200 calls_made:1 call_cycle:0 20:08:51 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:08:51 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:200 calls_made:1 call_cycle:0 20:08:51 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:08:51 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:200 calls_made:1 call_cycle:0 20:08:51 16 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:08:51 16 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:08:55 16 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:08:55 16 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:08:55 16 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:08:55 16 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:08:55 16 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:08:55 16 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:08:56 16 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0200lz 20:08:56 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0200lz.x00 20:08:56 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0200lz.x01 20:08:56 16 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0200lz.r in process_file_group 20:08:56 16 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260200.log 20:08:56 16 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:08:56 16 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0200dz 20:08:56 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0200dz.x00 20:08:56 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0200dz.x01 20:08:56 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0200dz.x02 20:08:56 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0200dz.x03 20:08:56 16 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0200dz.r in process_file_group 20:08:56 16 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [200] 20:08:56 16 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [200] 20:08:56 16 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260200) for profiles 20:08:56 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 20:08:57 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/554) 553 to QC_BAD because CT out of water 20:08:57 16 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.088m) 20:08:57 16 Feb 2017 UTC: INFO: QC.py(365): Changed (13/554) 2 3 185 187 191 194 212 220 222 226 233 234 240 to QC_PROBABLY_BAD because raw temperature spikes 20:08:57 16 Feb 2017 UTC: INFO: QC.py(377): Changed (1/554) 553 to QC_BAD because raw salinity below bound 20:08:57 16 Feb 2017 UTC: INFO: QC.py(408): Changed (10/554) 185 187 194 222 226 230 233 234 240 242 to QC_PROBABLY_BAD because raw conductivity spikes 20:08:57 16 Feb 2017 UTC: INFO: QC.py(180): Changed (13/554) 2 3 185 187 191 194 212 220 222 226 233 234 240 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 20:08:57 16 Feb 2017 UTC: INFO: QC.py(180): Changed (2/554) 230 242 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 20:08:57 16 Feb 2017 UTC: INFO: QC.py(365): Changed (13/554) 2 3 185 187 191 194 212 220 222 226 233 234 240 to QC_INTERPOLATED because temperature spikes 20:08:57 16 Feb 2017 UTC: INFO: QC.py(377): Changed (1/554) 553 to QC_BAD because salinity below bound 20:08:57 16 Feb 2017 UTC: INFO: QC.py(408): Changed (10/554) 185 187 194 222 226 230 233 234 240 242 to QC_INTERPOLATED because conductivity spikes 20:08:57 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/554) 216:221 to QC_BAD because slow apogee CT flow 20:08:57 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/554) 1:6 to QC_BAD because prior to dive start 20:08:57 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/554) 552 554 to QC_BAD because end of climb 20:08:57 16 Feb 2017 UTC: INFO: QC.py(488): Changed (1/554) 222 to QC_PROBABLY_BAD because bad interpolation anchors 20:08:57 16 Feb 2017 UTC: INFO: QC.py(489): SUGGESTION: 200 bad_conductivity data_points in_between 220 222 % bad interpolation anchors 20:08:57 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/554) 1:6 216:221 552:554 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 20:08:57 16 Feb 2017 UTC: INFO: QC.py(180): Changed (15/554) 1:6 216:221 552:554 to QC_BAD because changed corrected salin implies changed speed 20:08:57 16 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 20:08:57 16 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 200 interp_salinity data_points in_between 307 321 % suspect thermal-inertia points 318 319 20:08:57 16 Feb 2017 UTC: INFO: QC.py(180): Changed (10/554) 185 187 191 194 212 222 226 233 234 240 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 20:08:57 16 Feb 2017 UTC: INFO: QC.py(180): Changed (1/554) 222 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 20:08:57 16 Feb 2017 UTC: INFO: QC.py(180): Changed (2/554) 230 242 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 20:08:57 16 Feb 2017 UTC: INFO: QC.py(180): Changed (10/554) 185 187 191 194 212 222 226 233 234 240 to QC_INTERPOLATED because changed corrected temp implies changed speed 20:08:57 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.71 cm/s 20:08:57 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.81 cm/s 20:08:57 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 20:08:57 16 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (158/554) 119 120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 20:08:57 16 Feb 2017 UTC: INFO: QC.py(180): Changed (4/554) 2 3 191 226 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 20:08:57 16 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (158/554) 119 120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 20:08:57 16 Feb 2017 UTC: INFO: QC.py(180): Changed (4/554) 2 3 191 226 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 20:08:57 16 Feb 2017 UTC: INFO: QC.py(180): Changed (15/554) 1:6 216:221 552:554 to QC_BAD because changed salinity implies changed optode oxygen 20:08:57 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 20:08:57 16 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 20:08:57 16 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 20:08:58 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 200: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.71% reduction 20:08:58 16 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.200 20:08:58 16 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:08:58 16 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:08:58 16 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:08:58 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 20:08:58 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 20:10:28 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 20:10:28 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 20:10:28 16 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 20:10:45 16 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:10:45 16 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:10:45 16 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:10:45 16 Feb 2017 UTC /home/sg626/p6260200.log /home/sg626/p6260200.eng /home/sg626/p6260200.asc /home/sg626/p6260200.pro /home/sg626/p6260200.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 20:10:45 16 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:10:45 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:10:45 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:10:45 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:10:45 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:10:45 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:10:45 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:10:45 16 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:10:45 16 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:10:45 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:10:45 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:10:45 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:10:45 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:10:45 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:10:45 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:10:45 16 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:10:45 16 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:10:45 16 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:10:45 16 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:10:45 16 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:10:45 16 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:10:45 16 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:10:45 16 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:10:45 16 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 20:10:45 16 Feb 2017 UTC 23:11:06 16 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 25884 23:11:06 16 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 23:14:22 16 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 26016 23:14:22 16 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:14:22 16 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:14:22 16 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:14:22 16 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:14:22 16 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170216131421 ] 23:14:22 16 Feb 2017 UTC: INFO: Base.py(1333): PID:26024 23:14:22 16 Feb 2017 UTC: INFO: Base.py(1375): Started processing 23:14:22 16 Feb 2017 UTC 23:14:22 16 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:14:23 16 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:14:23 16 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:14:23 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:14:23 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:201 calls_made:1 call_cycle:0 23:14:23 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:14:23 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:201 calls_made:1 call_cycle:0 23:14:23 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:14:23 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:201 calls_made:1 call_cycle:0 23:14:23 16 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:201 calls_made:1 call_cycle:0 2326.2570 -15703.6830 02/16/17 23:09:00 UTC) to sdrifter@soest.hawaii.edu 23:14:23 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:201 calls_made:1 call_cycle:0 23:14:23 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:14:23 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:201 calls_made:1 call_cycle:0 23:14:23 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:14:23 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:201 calls_made:1 call_cycle:0 23:14:23 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:14:23 16 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:201 calls_made:1 call_cycle:0 23:14:23 16 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:14:23 16 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:14:27 16 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:14:27 16 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:14:27 16 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:14:27 16 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:14:27 16 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:14:27 16 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:14:28 16 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0201lz 23:14:28 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0201lz.x00 23:14:28 16 Feb 2017 UTC: WARNING: Base.py(706): Fragment ./sg0201lz.x00 file size (337) not equal to expected size (4096) 23:14:28 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0201lz.x01 23:14:28 16 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0201lz.r in process_file_group 23:14:28 16 Feb 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0201lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 0 23:14:28 16 Feb 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0201lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 1 23:14:28 16 Feb 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0201lz.r - expected 0x1468858818, generated 0x0 23:14:28 16 Feb 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0201lz.r - expected 0x3b2d, generated 0x0 23:14:28 16 Feb 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0201lz.r - skipping 23:14:28 16 Feb 2017 UTC: ERROR: Base.py(243): Could not process sg0201lz - skipping 23:14:28 16 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:14:28 16 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0201dz 23:14:28 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0201dz.x00 23:14:28 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0201dz.x01 23:14:28 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0201dz.x02 23:14:28 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0201dz.x03 23:14:28 16 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0201dz.r in process_file_group 23:14:28 16 Feb 2017 UTC: ERROR: LogFile.py(85): Could not open ./p6260201.log for reading 23:14:28 16 Feb 2017 UTC: ERROR: Base.py(606): Could not parse ./p6260201.log, skipping eng file creation 23:14:28 16 Feb 2017 UTC: ERROR: Base.py(272): Could not process sg0201dz - skipping 23:14:28 16 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:14:28 16 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0201lz 23:14:28 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0201lz.x00 23:14:28 16 Feb 2017 UTC: WARNING: Base.py(706): Fragment ./sg0201lz.x00 file size (337) not equal to expected size (4096) 23:14:28 16 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0201lz.x01 23:14:28 16 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0201lz.r in process_file_group 23:14:28 16 Feb 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0201lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 0 23:14:28 16 Feb 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0201lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 1 23:14:28 16 Feb 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0201lz.r - expected 0x1468858818, generated 0x0 23:14:28 16 Feb 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0201lz.r - expected 0x3b2d, generated 0x0 23:14:28 16 Feb 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0201lz.r - skipping 23:14:28 16 Feb 2017 UTC: ERROR: Base.py(272): Could not process sg0201lz - skipping 23:14:28 16 Feb 2017 UTC: WARNING: Base.py(1624): No dives to process 23:14:28 16 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [201] 23:14:28 16 Feb 2017 UTC: INFO: Base.py(1780): No dives found to profile 23:14:28 16 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.201 23:14:28 16 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:14:28 16 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:14:28 16 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:14:28 16 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:14:28 16 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:14:28 16 Feb 2017 UTC: ERROR: Base.py(1960): Dive [201] failed to process completely. The following files were not processed completely: /home/sg626/sg0201lz.r Fragment ./sg0201lz.x00 file size (337) not equal to expected size (4096) - consider resend_dive /l 201 00 Glider logout seen - transmissions from glider complete Consult baselog_170216131421 for details. 23:14:28 16 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:14:28 16 Feb 2017 UTC /home/sg626/p6260201.eng /home/sg626/p6260201.asc 23:14:28 16 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:14:28 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:14:28 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:14:28 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:14:28 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:14:28 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:14:28 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:14:28 16 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:14:28 16 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:14:28 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:14:28 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:14:28 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:14:28 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:14:28 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:14:28 16 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:14:28 16 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:14:28 16 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:14:28 16 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:14:28 16 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:14:28 16 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:14:28 16 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:14:28 16 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:14:28 16 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:14:28 16 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 23:14:28 16 Feb 2017 UTC 02:18:50 17 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 31087 02:18:50 17 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:21:34 17 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 31284 02:21:34 17 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:21:34 17 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:21:34 17 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:21:34 17 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:21:34 17 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170216162133 ] 02:21:34 17 Feb 2017 UTC: INFO: Base.py(1333): PID:31291 02:21:34 17 Feb 2017 UTC: INFO: Base.py(1375): Started processing 02:21:34 17 Feb 2017 UTC 02:21:34 17 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:21:35 17 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:21:35 17 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:21:35 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:21:35 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:202 calls_made:1 call_cycle:0 02:21:35 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:21:35 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:202 calls_made:1 call_cycle:0 02:21:35 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:21:35 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:202 calls_made:1 call_cycle:0 02:21:35 17 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:202 calls_made:1 call_cycle:0 2326.7770 -15702.2220 02/17/17 02:16:49 UTC) to sdrifter@soest.hawaii.edu 02:21:35 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:202 calls_made:1 call_cycle:0 02:21:35 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:21:35 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:202 calls_made:1 call_cycle:0 02:21:35 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:21:35 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:202 calls_made:1 call_cycle:0 02:21:35 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:21:35 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:202 calls_made:1 call_cycle:0 02:21:35 17 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:21:35 17 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:21:38 17 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:21:39 17 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:21:39 17 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:21:39 17 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:21:39 17 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:21:39 17 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:21:40 17 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0201lz 02:21:40 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0201lz.x00 02:21:40 17 Feb 2017 UTC: WARNING: Base.py(706): Fragment ./sg0201lz.x00 file size (337) not equal to expected size (4096) 02:21:40 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0201lz.x01 02:21:40 17 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0201lz.r in process_file_group 02:21:40 17 Feb 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0201lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 0 02:21:40 17 Feb 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0201lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 1 02:21:40 17 Feb 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0201lz.r - expected 0x1468858818, generated 0x0 02:21:40 17 Feb 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0201lz.r - expected 0x3b2d, generated 0x0 02:21:40 17 Feb 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0201lz.r - skipping 02:21:40 17 Feb 2017 UTC: ERROR: Base.py(243): Could not process sg0201lz - skipping 02:21:40 17 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 02:21:40 17 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0201dz 02:21:40 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0201dz.x00 02:21:40 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0201dz.x01 02:21:40 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0201dz.x02 02:21:40 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0201dz.x03 02:21:40 17 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0201dz.r in process_file_group 02:21:40 17 Feb 2017 UTC: ERROR: LogFile.py(85): Could not open ./p6260201.log for reading 02:21:40 17 Feb 2017 UTC: ERROR: Base.py(606): Could not parse ./p6260201.log, skipping eng file creation 02:21:40 17 Feb 2017 UTC: ERROR: Base.py(272): Could not process sg0201dz - skipping 02:21:40 17 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 02:21:40 17 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0201lz 02:21:40 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0201lz.x00 02:21:40 17 Feb 2017 UTC: WARNING: Base.py(706): Fragment ./sg0201lz.x00 file size (337) not equal to expected size (4096) 02:21:40 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0201lz.x01 02:21:40 17 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0201lz.r in process_file_group 02:21:40 17 Feb 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0201lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 0 02:21:40 17 Feb 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0201lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 1 02:21:40 17 Feb 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0201lz.r - expected 0x1468858818, generated 0x0 02:21:40 17 Feb 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0201lz.r - expected 0x3b2d, generated 0x0 02:21:40 17 Feb 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0201lz.r - skipping 02:21:40 17 Feb 2017 UTC: ERROR: Base.py(272): Could not process sg0201lz - skipping 02:21:40 17 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0202lz 02:21:40 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0202lz.x00 02:21:40 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0202lz.x01 02:21:40 17 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0202lz.r in process_file_group 02:21:40 17 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260202.log 02:21:40 17 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 02:21:40 17 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0202dz 02:21:40 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0202dz.x00 02:21:40 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0202dz.x01 02:21:40 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0202dz.x02 02:21:40 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0202dz.x03 02:21:40 17 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0202dz.r in process_file_group 02:21:40 17 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [202] 02:21:40 17 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [201, 202] 02:21:40 17 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260202) for profiles 02:21:40 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 02:21:40 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/548) 547 548 to QC_BAD because CT out of water 02:21:40 17 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.096m) 02:21:40 17 Feb 2017 UTC: INFO: QC.py(365): Changed (12/548) 2 3 176 194 198 201 202 226 246 249:251 to QC_PROBABLY_BAD because raw temperature spikes 02:21:40 17 Feb 2017 UTC: INFO: QC.py(408): Changed (11/548) 176 194 201 202 210 237 246 249:251 254 to QC_PROBABLY_BAD because raw conductivity spikes 02:21:40 17 Feb 2017 UTC: INFO: QC.py(180): Changed (12/548) 2 3 176 194 198 201 202 226 246 249:251 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:21:40 17 Feb 2017 UTC: INFO: QC.py(180): Changed (3/548) 210 237 254 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 02:21:40 17 Feb 2017 UTC: INFO: QC.py(180): Changed (2/548) 547 548 to QC_BAD because changed raw cond implies changed raw salinity 02:21:40 17 Feb 2017 UTC: INFO: QC.py(365): Changed (12/548) 2 3 176 194 198 201 202 226 246 249:251 to QC_INTERPOLATED because temperature spikes 02:21:40 17 Feb 2017 UTC: INFO: QC.py(408): Changed (11/548) 176 194 201 202 210 237 246 249:251 254 to QC_INTERPOLATED because conductivity spikes 02:21:40 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/548) 224:229 to QC_BAD because slow apogee CT flow 02:21:40 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/548) 1:6 to QC_BAD because prior to dive start 02:21:40 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/548) 546 to QC_BAD because end of climb 02:21:40 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/548) 1:6 224:229 546:548 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:21:40 17 Feb 2017 UTC: INFO: QC.py(180): Changed (15/548) 1:6 224:229 546:548 to QC_BAD because changed corrected salin implies changed speed 02:21:41 17 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:21:41 17 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 202 interp_salinity data_points in_between 269 334 % suspect thermal-inertia points 331:334 02:21:41 17 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 202 interp_salinity data_points in_between 336 340 % suspect thermal-inertia points 336 02:21:41 17 Feb 2017 UTC: INFO: QC.py(180): Changed (9/548) 176 194 198 201 202 246 249:251 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 02:21:41 17 Feb 2017 UTC: INFO: QC.py(180): Changed (3/548) 210 237 254 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 02:21:41 17 Feb 2017 UTC: INFO: QC.py(180): Changed (9/548) 176 194 198 201 202 246 249:251 to QC_INTERPOLATED because changed corrected temp implies changed speed 02:21:41 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.34 cm/s 02:21:41 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.90 cm/s 02:21:41 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:21:41 17 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (164/548) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:21:41 17 Feb 2017 UTC: INFO: QC.py(180): Changed (7/548) 2 3 176 201 226 246 251 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:21:41 17 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (164/548) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 02:21:41 17 Feb 2017 UTC: INFO: QC.py(180): Changed (7/548) 2 3 176 201 226 246 251 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:21:41 17 Feb 2017 UTC: INFO: QC.py(180): Changed (15/548) 1:6 224:229 546:548 to QC_BAD because changed salinity implies changed optode oxygen 02:21:41 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:21:41 17 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:21:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 02:21:41 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 202: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.74% reduction 02:21:41 17 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.202 02:21:41 17 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:21:41 17 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:21:41 17 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:21:42 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 02:21:42 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 02:23:12 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 02:23:13 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 02:23:13 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 02:23:29 17 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:23:29 17 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:23:29 17 Feb 2017 UTC: ERROR: Base.py(1960): Dive [201] failed to process completely. The following files were not processed completely: /home/sg626/sg0201lz.r Fragment ./sg0201lz.x00 file size (337) not equal to expected size (4096) - consider resend_dive /l 201 00 Glider logout seen - transmissions from glider complete Consult baselog_170216162133 for details. 02:23:29 17 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:23:29 17 Feb 2017 UTC /home/sg626/p6260201.eng /home/sg626/p6260202.log /home/sg626/p6260202.eng /home/sg626/p6260201.asc /home/sg626/p6260202.asc /home/sg626/p6260202.pro /home/sg626/p6260202.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 02:23:29 17 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:23:29 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:23:29 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:23:29 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:23:29 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:23:29 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:23:29 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:23:29 17 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:23:29 17 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:23:29 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:23:29 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:23:29 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:23:29 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:23:29 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:23:29 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:23:29 17 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:23:29 17 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:23:29 17 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:23:29 17 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:23:29 17 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:23:29 17 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:23:29 17 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:23:29 17 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:23:29 17 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 02:23:29 17 Feb 2017 UTC 05:22:48 17 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 4068 05:22:48 17 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:25:34 17 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 4193 05:25:34 17 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:25:34 17 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:25:34 17 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:25:34 17 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:25:34 17 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170216192533 ] 05:25:34 17 Feb 2017 UTC: INFO: Base.py(1333): PID:4200 05:25:34 17 Feb 2017 UTC: INFO: Base.py(1375): Started processing 05:25:34 17 Feb 2017 UTC 05:25:34 17 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:25:34 17 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:25:34 17 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:25:34 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:25:34 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:203 calls_made:1 call_cycle:0 05:25:34 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:25:34 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:203 calls_made:1 call_cycle:0 05:25:34 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:25:34 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:203 calls_made:1 call_cycle:0 05:25:34 17 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:203 calls_made:1 call_cycle:0 2327.2010 -15700.2500 02/17/17 05:20:37 UTC) to sdrifter@soest.hawaii.edu 05:25:34 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:203 calls_made:1 call_cycle:0 05:25:34 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:25:34 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:203 calls_made:1 call_cycle:0 05:25:34 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:25:34 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:203 calls_made:1 call_cycle:0 05:25:34 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:25:34 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:203 calls_made:1 call_cycle:0 05:25:34 17 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:25:34 17 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:25:38 17 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:25:38 17 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:25:38 17 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:25:38 17 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:25:38 17 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:25:38 17 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:25:39 17 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0201lz 05:25:39 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0201lz.x00 05:25:39 17 Feb 2017 UTC: WARNING: Base.py(706): Fragment ./sg0201lz.x00 file size (337) not equal to expected size (4096) 05:25:39 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0201lz.x01 05:25:39 17 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0201lz.r in process_file_group 05:25:39 17 Feb 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0201lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 0 05:25:39 17 Feb 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0201lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 1 05:25:39 17 Feb 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0201lz.r - expected 0x1468858818, generated 0x0 05:25:39 17 Feb 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0201lz.r - expected 0x3b2d, generated 0x0 05:25:39 17 Feb 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0201lz.r - skipping 05:25:39 17 Feb 2017 UTC: ERROR: Base.py(243): Could not process sg0201lz - skipping 05:25:39 17 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:25:39 17 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0201dz 05:25:39 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0201dz.x00 05:25:39 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0201dz.x01 05:25:39 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0201dz.x02 05:25:39 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0201dz.x03 05:25:39 17 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0201dz.r in process_file_group 05:25:39 17 Feb 2017 UTC: ERROR: LogFile.py(85): Could not open ./p6260201.log for reading 05:25:39 17 Feb 2017 UTC: ERROR: Base.py(606): Could not parse ./p6260201.log, skipping eng file creation 05:25:39 17 Feb 2017 UTC: ERROR: Base.py(272): Could not process sg0201dz - skipping 05:25:39 17 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:25:39 17 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0201lz 05:25:39 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0201lz.x00 05:25:39 17 Feb 2017 UTC: WARNING: Base.py(706): Fragment ./sg0201lz.x00 file size (337) not equal to expected size (4096) 05:25:39 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0201lz.x01 05:25:39 17 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0201lz.r in process_file_group 05:25:39 17 Feb 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0201lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 0 05:25:39 17 Feb 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0201lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 1 05:25:39 17 Feb 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0201lz.r - expected 0x1468858818, generated 0x0 05:25:39 17 Feb 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0201lz.r - expected 0x3b2d, generated 0x0 05:25:39 17 Feb 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0201lz.r - skipping 05:25:39 17 Feb 2017 UTC: ERROR: Base.py(272): Could not process sg0201lz - skipping 05:25:39 17 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0203lz 05:25:39 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0203lz.x00 05:25:39 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0203lz.x01 05:25:39 17 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0203lz.r in process_file_group 05:25:39 17 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260203.log 05:25:39 17 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:25:39 17 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0203dz 05:25:39 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0203dz.x00 05:25:39 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0203dz.x01 05:25:39 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0203dz.x02 05:25:39 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0203dz.x03 05:25:39 17 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0203dz.r in process_file_group 05:25:40 17 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [203] 05:25:40 17 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [201, 203] 05:25:40 17 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260203) for profiles 05:25:40 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:25:40 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/529) 529 to QC_BAD because CT out of water 05:25:40 17 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.035m) 05:25:40 17 Feb 2017 UTC: INFO: QC.py(365): Changed (13/529) 181 187 192 215 219 226 236:239 244 248 249 to QC_PROBABLY_BAD because raw temperature spikes 05:25:40 17 Feb 2017 UTC: INFO: QC.py(377): Changed (1/529) 529 to QC_BAD because raw salinity below bound 05:25:40 17 Feb 2017 UTC: INFO: QC.py(408): Changed (14/529) 181 187:189 194 226 236:239 244 248 249 256 to QC_PROBABLY_BAD because raw conductivity spikes 05:25:40 17 Feb 2017 UTC: INFO: QC.py(180): Changed (13/529) 181 187 192 215 219 226 236:239 244 248 249 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:25:40 17 Feb 2017 UTC: INFO: QC.py(180): Changed (4/529) 188 189 194 256 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 05:25:40 17 Feb 2017 UTC: INFO: QC.py(365): Changed (13/529) 181 187 192 215 219 226 236:239 244 248 249 to QC_INTERPOLATED because temperature spikes 05:25:40 17 Feb 2017 UTC: INFO: QC.py(377): Changed (1/529) 529 to QC_BAD because salinity below bound 05:25:40 17 Feb 2017 UTC: INFO: QC.py(408): Changed (14/529) 181 187:189 194 226 236:239 244 248 249 256 to QC_INTERPOLATED because conductivity spikes 05:25:40 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/529) 217:221 to QC_BAD because slow apogee CT flow 05:25:40 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/529) 1:6 to QC_BAD because prior to dive start 05:25:40 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/529) 1:6 217:221 529 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:25:40 17 Feb 2017 UTC: INFO: QC.py(180): Changed (12/529) 1:6 217:221 529 to QC_BAD because changed corrected salin implies changed speed 05:25:41 17 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:25:41 17 Feb 2017 UTC: INFO: QC.py(180): Changed (12/529) 181 187 192 215 226 236:239 244 248 249 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 05:25:41 17 Feb 2017 UTC: INFO: QC.py(180): Changed (4/529) 188 189 194 256 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 05:25:41 17 Feb 2017 UTC: INFO: QC.py(180): Changed (12/529) 181 187 192 215 226 236:239 244 248 249 to QC_INTERPOLATED because changed corrected temp implies changed speed 05:25:41 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.77 cm/s 05:25:41 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.36 cm/s 05:25:41 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:25:41 17 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (162/529) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:25:41 17 Feb 2017 UTC: INFO: QC.py(180): Changed (3/529) 181 226 236 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:25:41 17 Feb 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/529) 528 to QC_BAD because slow flow in SBE43 05:25:41 17 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (162/529) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:25:41 17 Feb 2017 UTC: INFO: QC.py(180): Changed (3/529) 181 226 236 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:25:41 17 Feb 2017 UTC: INFO: QC.py(180): Changed (12/529) 1:6 217:221 529 to QC_BAD because changed salinity implies changed optode oxygen 05:25:41 17 Feb 2017 UTC: INFO: QC.py(180): Changed (1/529) 256 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 05:25:41 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:25:41 17 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:25:41 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 05:25:41 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 203: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.27% reduction 05:25:41 17 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.203 05:25:41 17 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:25:41 17 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:25:41 17 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:25:41 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 05:25:41 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 05:27:12 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 05:27:13 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 05:27:13 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 05:27:30 17 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:27:30 17 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:27:30 17 Feb 2017 UTC: ERROR: Base.py(1960): Dive [201] failed to process completely. The following files were not processed completely: /home/sg626/sg0201lz.r Fragment ./sg0201lz.x00 file size (337) not equal to expected size (4096) - consider resend_dive /l 201 00 Glider logout seen - transmissions from glider complete Consult baselog_170216192533 for details. 05:27:30 17 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:27:30 17 Feb 2017 UTC /home/sg626/p6260201.eng /home/sg626/p6260203.log /home/sg626/p6260203.eng /home/sg626/p6260201.asc /home/sg626/p6260203.asc /home/sg626/p6260203.pro /home/sg626/p6260203.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 05:27:30 17 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:27:30 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:27:30 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:27:30 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:27:30 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:27:30 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:27:30 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:27:30 17 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:27:30 17 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:27:30 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:27:30 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:27:30 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:27:30 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:27:30 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:27:30 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:27:30 17 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:27:30 17 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:27:30 17 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:27:30 17 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:27:30 17 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:27:30 17 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:27:30 17 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:27:30 17 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:27:30 17 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 05:27:30 17 Feb 2017 UTC 08:31:26 17 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 10329 08:31:26 17 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {P} 08:35:12 17 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 10526 08:35:12 17 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:35:12 17 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:35:12 17 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:35:12 17 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:35:12 17 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170216223512 ] 08:35:12 17 Feb 2017 UTC: INFO: Base.py(1333): PID:10534 08:35:12 17 Feb 2017 UTC: INFO: Base.py(1375): Started processing 08:35:12 17 Feb 2017 UTC 08:35:12 17 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:35:13 17 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:35:13 17 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:35:13 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:35:13 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:204 calls_made:1 call_cycle:0 08:35:13 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:35:13 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:204 calls_made:1 call_cycle:0 08:35:13 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:35:13 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:204 calls_made:1 call_cycle:0 08:35:13 17 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:204 calls_made:1 call_cycle:0 2327.4900 -15659.8330 02/17/17 08:29:19 UTC) to sdrifter@soest.hawaii.edu 08:35:13 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:204 calls_made:1 call_cycle:0 08:35:13 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:35:13 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:204 calls_made:1 call_cycle:0 08:35:13 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:35:13 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:204 calls_made:1 call_cycle:0 08:35:13 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:35:13 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:204 calls_made:1 call_cycle:0 08:35:13 17 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:35:13 17 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:35:17 17 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:35:17 17 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:35:17 17 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:35:17 17 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:35:17 17 Feb 2017 UTC: INFO: Base.py(743): Processing ./sg0204pz.000 08:35:17 17 Feb 2017 UTC: INFO: Base.py(1593): Processed pdos logfile(s) ['sg0204pz.000'] 08:35:17 17 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:35:18 17 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0201lz 08:35:18 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0201lz.x00 08:35:18 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0201lz.x01 08:35:18 17 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0201lz.r in process_file_group 08:35:18 17 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260201.log 08:35:18 17 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:35:18 17 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0201dz 08:35:18 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0201dz.x00 08:35:18 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0201dz.x01 08:35:18 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0201dz.x02 08:35:18 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0201dz.x03 08:35:18 17 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0201dz.r in process_file_group 08:35:18 17 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0204lz 08:35:18 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0204lz.x00 08:35:18 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0204lz.x01 08:35:18 17 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0204lz.r in process_file_group 08:35:18 17 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260204.log 08:35:18 17 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:35:18 17 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0204dz 08:35:18 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0204dz.x00 08:35:18 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0204dz.x01 08:35:18 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0204dz.x02 08:35:18 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0204dz.x03 08:35:18 17 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0204dz.r in process_file_group 08:35:19 17 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [201, 204] 08:35:19 17 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [201, 204] 08:35:19 17 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260201) for profiles 08:35:19 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:35:19 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/556) 555 to QC_BAD because CT out of water 08:35:19 17 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.094m) 08:35:19 17 Feb 2017 UTC: INFO: QC.py(365): Changed (15/556) 2 180 181 194 195 197 200 208 213 214 224 241 242 ... to QC_PROBABLY_BAD because raw temperature spikes 08:35:19 17 Feb 2017 UTC: INFO: QC.py(377): Changed (1/556) 555 to QC_BAD because raw salinity below bound 08:35:19 17 Feb 2017 UTC: INFO: QC.py(408): Changed (10/556) 180 197 200 208 213 214 241 242 246 257 to QC_PROBABLY_BAD because raw conductivity spikes 08:35:19 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/556) 556 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 08:35:19 17 Feb 2017 UTC: INFO: QC.py(180): Changed (15/556) 2 180 181 194 195 197 200 208 213 214 224 241 242 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:35:19 17 Feb 2017 UTC: INFO: QC.py(180): Changed (1/556) 556 to QC_BAD because changed raw cond implies changed raw salinity 08:35:19 17 Feb 2017 UTC: INFO: QC.py(365): Changed (15/556) 2 180 181 194 195 197 200 208 213 214 224 241 242 ... to QC_INTERPOLATED because temperature spikes 08:35:19 17 Feb 2017 UTC: INFO: QC.py(377): Changed (1/556) 555 to QC_BAD because salinity below bound 08:35:19 17 Feb 2017 UTC: INFO: QC.py(408): Changed (10/556) 180 197 200 208 213 214 241 242 246 257 to QC_INTERPOLATED because conductivity spikes 08:35:19 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/556) 556 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 08:35:19 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/556) 222:227 to QC_BAD because slow apogee CT flow 08:35:19 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/556) 1:6 to QC_BAD because prior to dive start 08:35:19 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/556) 554 to QC_BAD because end of climb 08:35:19 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/556) 1:6 222:227 554:556 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:35:19 17 Feb 2017 UTC: INFO: QC.py(180): Changed (15/556) 1:6 222:227 554:556 to QC_BAD because changed corrected salin implies changed speed 08:35:20 17 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:35:20 17 Feb 2017 UTC: INFO: QC.py(180): Changed (13/556) 180 181 194 195 197 200 208 213 214 241 242 246 ... to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 08:35:20 17 Feb 2017 UTC: INFO: QC.py(180): Changed (13/556) 180 181 194 195 197 200 208 213 214 241 242 246 ... to QC_INTERPOLATED because changed corrected temp implies changed speed 08:35:20 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.89 cm/s 08:35:20 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.95 cm/s 08:35:20 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:35:20 17 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (159/556) 124 125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:35:20 17 Feb 2017 UTC: INFO: QC.py(180): Changed (4/556) 2 181 241 246 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:35:20 17 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (159/556) 124 125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:35:20 17 Feb 2017 UTC: INFO: QC.py(180): Changed (4/556) 2 181 241 246 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:35:20 17 Feb 2017 UTC: INFO: QC.py(180): Changed (15/556) 1:6 222:227 554:556 to QC_BAD because changed salinity implies changed optode oxygen 08:35:20 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:35:20 17 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:35:20 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 08:35:20 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 201: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.70% reduction 08:35:20 17 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260204) for profiles 08:35:20 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:35:20 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/578) 577 578 to QC_BAD because CT out of water 08:35:20 17 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.054m) 08:35:20 17 Feb 2017 UTC: INFO: QC.py(365): Changed (3/578) 2 214 229 to QC_PROBABLY_BAD because raw temperature spikes 08:35:20 17 Feb 2017 UTC: INFO: QC.py(377): Changed (1/578) 578 to QC_BAD because raw salinity below bound 08:35:20 17 Feb 2017 UTC: INFO: QC.py(408): Changed (1/578) 214 to QC_PROBABLY_BAD because raw conductivity spikes 08:35:20 17 Feb 2017 UTC: INFO: QC.py(180): Changed (3/578) 2 214 229 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:35:20 17 Feb 2017 UTC: INFO: QC.py(180): Changed (1/578) 577 to QC_BAD because changed raw cond implies changed raw salinity 08:35:20 17 Feb 2017 UTC: INFO: QC.py(365): Changed (3/578) 2 214 229 to QC_INTERPOLATED because temperature spikes 08:35:20 17 Feb 2017 UTC: INFO: QC.py(377): Changed (1/578) 578 to QC_BAD because salinity below bound 08:35:20 17 Feb 2017 UTC: INFO: QC.py(408): Changed (1/578) 214 to QC_INTERPOLATED because conductivity spikes 08:35:20 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/578) 227:231 to QC_BAD because slow apogee CT flow 08:35:20 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/578) 1:6 to QC_BAD because prior to dive start 08:35:20 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/578) 1:6 227:231 577 578 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:35:20 17 Feb 2017 UTC: INFO: QC.py(180): Changed (13/578) 1:6 227:231 577 578 to QC_BAD because changed corrected salin implies changed speed 08:35:21 17 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:35:21 17 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 204 interp_salinity data_points in_between 319 327 % suspect thermal-inertia points 325 08:35:21 17 Feb 2017 UTC: INFO: QC.py(180): Changed (1/578) 214 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 08:35:21 17 Feb 2017 UTC: INFO: QC.py(180): Changed (1/578) 214 to QC_INTERPOLATED because changed corrected temp implies changed speed 08:35:21 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.21 cm/s 08:35:21 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.76 cm/s 08:35:21 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:35:21 17 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/578) 124 125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:35:21 17 Feb 2017 UTC: INFO: QC.py(180): Changed (1/578) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:35:21 17 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/578) 124 125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:35:21 17 Feb 2017 UTC: INFO: QC.py(180): Changed (1/578) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:35:21 17 Feb 2017 UTC: INFO: QC.py(180): Changed (13/578) 1:6 227:231 577 578 to QC_BAD because changed salinity implies changed optode oxygen 08:35:21 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:35:21 17 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 08:35:21 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 204: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.25% reduction 08:35:21 17 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.204 08:35:21 17 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./pdoscmds.bat to ./pdoscmds.bat.204 08:35:21 17 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:35:21 17 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:35:21 17 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:35:21 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 08:35:21 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 08:36:54 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 08:36:54 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 08:36:54 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 08:37:11 17 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:37:11 17 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:37:11 17 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:37:11 17 Feb 2017 UTC /home/sg626/p6260201.log /home/sg626/p6260201.eng /home/sg626/p6260204.log /home/sg626/p6260204.eng /home/sg626/p6260201.asc /home/sg626/p6260204.asc /home/sg626/p6260201.pro /home/sg626/p6260201.nc /home/sg626/p6260204.pro /home/sg626/p6260204.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 08:37:11 17 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:37:11 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:37:11 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:37:11 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:37:11 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:37:11 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:37:11 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:37:11 17 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:37:11 17 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:37:11 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:37:11 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:37:11 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:37:11 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:37:11 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:37:11 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:37:11 17 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:37:11 17 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:37:11 17 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:37:11 17 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:37:11 17 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:37:11 17 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:37:11 17 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:37:11 17 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:37:11 17 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 08:37:11 17 Feb 2017 UTC 11:39:36 17 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 18795 11:39:36 17 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 11:42:16 17 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 19112 11:42:16 17 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:42:16 17 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 11:42:16 17 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 11:42:16 17 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:42:16 17 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170217014216 ] 11:42:16 17 Feb 2017 UTC: INFO: Base.py(1333): PID:19120 11:42:16 17 Feb 2017 UTC: INFO: Base.py(1375): Started processing 11:42:16 17 Feb 2017 UTC 11:42:16 17 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 11:42:17 17 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 11:42:17 17 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:42:17 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:42:17 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:205 calls_made:1 call_cycle:0 11:42:17 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:42:17 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:205 calls_made:1 call_cycle:0 11:42:17 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:42:17 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:205 calls_made:1 call_cycle:0 11:42:17 17 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:205 calls_made:1 call_cycle:0 2327.5480 -15658.2900 02/17/17 11:37:31 UTC) to sdrifter@soest.hawaii.edu 11:42:17 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:205 calls_made:1 call_cycle:0 11:42:17 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:42:17 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:205 calls_made:1 call_cycle:0 11:42:17 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:42:17 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:205 calls_made:1 call_cycle:0 11:42:17 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:42:17 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:205 calls_made:1 call_cycle:0 11:42:17 17 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:42:17 17 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:42:21 17 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:42:21 17 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:42:21 17 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 11:42:21 17 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:42:21 17 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:42:21 17 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 11:42:22 17 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0205lz 11:42:22 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0205lz.x00 11:42:22 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0205lz.x01 11:42:22 17 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0205lz.r in process_file_group 11:42:22 17 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260205.log 11:42:22 17 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 11:42:22 17 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0205dz 11:42:22 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0205dz.x00 11:42:22 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0205dz.x01 11:42:22 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0205dz.x02 11:42:22 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0205dz.x03 11:42:22 17 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0205dz.r in process_file_group 11:42:22 17 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [205] 11:42:22 17 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [205] 11:42:22 17 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260205) for profiles 11:42:22 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 11:42:22 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/559) 559 to QC_BAD because CT out of water 11:42:22 17 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.045m) 11:42:23 17 Feb 2017 UTC: INFO: QC.py(365): Changed (8/559) 200 202 204 220 223 227 241 243 to QC_PROBABLY_BAD because raw temperature spikes 11:42:23 17 Feb 2017 UTC: INFO: QC.py(408): Changed (8/559) 200 202 204 220 223 230 241 243 to QC_PROBABLY_BAD because raw conductivity spikes 11:42:23 17 Feb 2017 UTC: INFO: QC.py(180): Changed (8/559) 200 202 204 220 223 227 241 243 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 11:42:23 17 Feb 2017 UTC: INFO: QC.py(180): Changed (1/559) 230 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 11:42:23 17 Feb 2017 UTC: INFO: QC.py(180): Changed (1/559) 559 to QC_BAD because changed raw cond implies changed raw salinity 11:42:23 17 Feb 2017 UTC: INFO: QC.py(365): Changed (8/559) 200 202 204 220 223 227 241 243 to QC_INTERPOLATED because temperature spikes 11:42:23 17 Feb 2017 UTC: INFO: QC.py(408): Changed (8/559) 200 202 204 220 223 230 241 243 to QC_INTERPOLATED because conductivity spikes 11:42:23 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/559) 225:230 to QC_BAD because slow apogee CT flow 11:42:23 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/559) 1:6 to QC_BAD because prior to dive start 11:42:23 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/559) 558 to QC_BAD because end of climb 11:42:23 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/559) 1:6 225:230 558 559 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 11:42:23 17 Feb 2017 UTC: INFO: QC.py(180): Changed (14/559) 1:6 225:230 558 559 to QC_BAD because changed corrected salin implies changed speed 11:42:23 17 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 11:42:23 17 Feb 2017 UTC: INFO: QC.py(180): Changed (7/559) 200 202 204 220 223 241 243 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 11:42:23 17 Feb 2017 UTC: INFO: QC.py(180): Changed (7/559) 200 202 204 220 223 241 243 to QC_INTERPOLATED because changed corrected temp implies changed speed 11:42:23 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.07 cm/s 11:42:23 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.14 cm/s 11:42:23 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 11:42:23 17 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (163/559) 123:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 11:42:23 17 Feb 2017 UTC: INFO: QC.py(180): Changed (1/559) 241 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 11:42:23 17 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (163/559) 123:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 11:42:23 17 Feb 2017 UTC: INFO: QC.py(180): Changed (1/559) 241 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 11:42:23 17 Feb 2017 UTC: INFO: QC.py(180): Changed (14/559) 1:6 225:230 558 559 to QC_BAD because changed salinity implies changed optode oxygen 11:42:23 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 11:42:23 17 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 11:42:23 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 11:42:24 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 205: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.50% reduction 11:42:24 17 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.205 11:42:24 17 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:42:24 17 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:42:24 17 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:42:24 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 11:42:24 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 11:43:56 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 11:43:57 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 11:43:57 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 11:44:14 17 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:44:14 17 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:44:14 17 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:44:14 17 Feb 2017 UTC /home/sg626/p6260205.log /home/sg626/p6260205.eng /home/sg626/p6260205.asc /home/sg626/p6260205.pro /home/sg626/p6260205.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 11:44:14 17 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:44:14 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:44:14 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:44:14 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:44:14 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:44:14 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:44:14 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:44:14 17 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:44:14 17 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:44:14 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:44:14 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:44:14 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:44:14 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:44:14 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:44:14 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:44:14 17 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:44:14 17 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 11:44:14 17 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 11:44:14 17 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 11:44:14 17 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 11:44:14 17 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:44:14 17 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:44:14 17 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:44:14 17 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 11:44:14 17 Feb 2017 UTC 14:46:20 17 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 27848 14:46:21 17 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:49:22 17 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 28110 14:49:22 17 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:49:22 17 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 14:49:22 17 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 14:49:22 17 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:49:22 17 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170217044921 ] 14:49:22 17 Feb 2017 UTC: INFO: Base.py(1333): PID:28120 14:49:22 17 Feb 2017 UTC: INFO: Base.py(1375): Started processing 14:49:22 17 Feb 2017 UTC 14:49:22 17 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 14:49:23 17 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 14:49:23 17 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:49:23 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:49:23 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:206 calls_made:1 call_cycle:0 14:49:23 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:49:23 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:206 calls_made:1 call_cycle:0 14:49:23 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:49:23 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:206 calls_made:1 call_cycle:0 14:49:23 17 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:206 calls_made:1 call_cycle:0 2327.8470 -15656.6310 02/17/17 14:44:23 UTC) to sdrifter@soest.hawaii.edu 14:49:23 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:206 calls_made:1 call_cycle:0 14:49:23 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:49:23 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:206 calls_made:1 call_cycle:0 14:49:23 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:49:23 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:206 calls_made:1 call_cycle:0 14:49:23 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:49:23 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:206 calls_made:1 call_cycle:0 14:49:23 17 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:49:23 17 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:49:27 17 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:49:27 17 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:49:27 17 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 14:49:27 17 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:49:27 17 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:49:27 17 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 14:49:28 17 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0206lz 14:49:28 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0206lz.x00 14:49:28 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0206lz.x01 14:49:28 17 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0206lz.r in process_file_group 14:49:28 17 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260206.log 14:49:28 17 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 14:49:28 17 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0206dz 14:49:28 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0206dz.x00 14:49:28 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0206dz.x01 14:49:28 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0206dz.x02 14:49:28 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0206dz.x03 14:49:28 17 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0206dz.r in process_file_group 14:49:28 17 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [206] 14:49:28 17 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [206] 14:49:28 17 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260206) for profiles 14:49:28 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 14:49:28 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/561) 560 561 to QC_BAD because CT out of water 14:49:28 17 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.126m) 14:49:28 17 Feb 2017 UTC: INFO: QC.py(365): Changed (12/561) 176:178 182 183 187 190 202 203 224 236 246 to QC_PROBABLY_BAD because raw temperature spikes 14:49:28 17 Feb 2017 UTC: INFO: QC.py(408): Changed (11/561) 176:178 182 183 187 190 202 203 236 246 to QC_PROBABLY_BAD because raw conductivity spikes 14:49:28 17 Feb 2017 UTC: INFO: QC.py(180): Changed (12/561) 176:178 182 183 187 190 202 203 224 236 246 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:49:28 17 Feb 2017 UTC: INFO: QC.py(180): Changed (2/561) 560 561 to QC_BAD because changed raw cond implies changed raw salinity 14:49:28 17 Feb 2017 UTC: INFO: QC.py(365): Changed (12/561) 176:178 182 183 187 190 202 203 224 236 246 to QC_INTERPOLATED because temperature spikes 14:49:28 17 Feb 2017 UTC: INFO: QC.py(408): Changed (11/561) 176:178 182 183 187 190 202 203 236 246 to QC_INTERPOLATED because conductivity spikes 14:49:28 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/561) 222:226 to QC_BAD because slow apogee CT flow 14:49:29 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/561) 1:6 to QC_BAD because prior to dive start 14:49:29 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/561) 559 to QC_BAD because end of climb 14:49:29 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/561) 1:6 222:226 559:561 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:49:29 17 Feb 2017 UTC: INFO: QC.py(180): Changed (14/561) 1:6 222:226 559:561 to QC_BAD because changed corrected salin implies changed speed 14:49:29 17 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:49:29 17 Feb 2017 UTC: INFO: QC.py(180): Changed (11/561) 176:178 182 183 187 190 202 203 236 246 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 14:49:29 17 Feb 2017 UTC: INFO: QC.py(180): Changed (11/561) 176:178 182 183 187 190 202 203 236 246 to QC_INTERPOLATED because changed corrected temp implies changed speed 14:49:29 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.41 cm/s 14:49:29 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.92 cm/s 14:49:29 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:49:29 17 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (158/561) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:49:29 17 Feb 2017 UTC: INFO: QC.py(180): Changed (3/561) 176 236 246 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 14:49:29 17 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (158/561) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 14:49:29 17 Feb 2017 UTC: INFO: QC.py(180): Changed (3/561) 176 236 246 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 14:49:29 17 Feb 2017 UTC: INFO: QC.py(180): Changed (14/561) 1:6 222:226 559:561 to QC_BAD because changed salinity implies changed optode oxygen 14:49:29 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:49:29 17 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:49:29 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 14:49:29 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 206: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.50% reduction 14:49:30 17 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.206 14:49:30 17 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:49:30 17 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:49:30 17 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:49:30 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 14:49:30 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 14:51:02 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 14:51:03 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 14:51:03 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 14:51:20 17 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:51:20 17 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:51:20 17 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:51:20 17 Feb 2017 UTC /home/sg626/p6260206.log /home/sg626/p6260206.eng /home/sg626/p6260206.asc /home/sg626/p6260206.pro /home/sg626/p6260206.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 14:51:20 17 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:51:20 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:51:20 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:51:20 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:51:20 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:51:20 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:51:20 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:51:20 17 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:51:20 17 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:51:20 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:51:20 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:51:20 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:51:20 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:51:20 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:51:20 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:51:20 17 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:51:20 17 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:51:20 17 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:51:20 17 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:51:20 17 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:51:20 17 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:51:20 17 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:51:20 17 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:51:20 17 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 14:51:20 17 Feb 2017 UTC 17:52:02 17 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 6954 17:52:02 17 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:54:49 17 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 7154 17:54:49 17 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:54:49 17 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:54:49 17 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:54:49 17 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:54:49 17 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170217075448 ] 17:54:49 17 Feb 2017 UTC: INFO: Base.py(1333): PID:7161 17:54:49 17 Feb 2017 UTC: INFO: Base.py(1375): Started processing 17:54:49 17 Feb 2017 UTC 17:54:49 17 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:54:50 17 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:54:50 17 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:54:50 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:54:50 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:207 calls_made:1 call_cycle:0 17:54:50 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:54:50 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:207 calls_made:1 call_cycle:0 17:54:50 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:54:50 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:207 calls_made:1 call_cycle:0 17:54:50 17 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:207 calls_made:1 call_cycle:0 2328.1230 -15654.9030 02/17/17 17:50:00 UTC) to sdrifter@soest.hawaii.edu 17:54:50 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:207 calls_made:1 call_cycle:0 17:54:50 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:54:50 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:207 calls_made:1 call_cycle:0 17:54:50 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:54:50 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:207 calls_made:1 call_cycle:0 17:54:50 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:54:50 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:207 calls_made:1 call_cycle:0 17:54:50 17 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:54:50 17 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:54:53 17 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:54:54 17 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:54:54 17 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:54:54 17 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:54:54 17 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:54:54 17 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:54:55 17 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0207lz 17:54:55 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0207lz.x00 17:54:55 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0207lz.x01 17:54:55 17 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0207lz.r in process_file_group 17:54:55 17 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260207.log 17:54:55 17 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:54:55 17 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0207dz 17:54:55 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0207dz.x00 17:54:55 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0207dz.x01 17:54:55 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0207dz.x02 17:54:55 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0207dz.x03 17:54:55 17 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0207dz.r in process_file_group 17:54:55 17 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [207] 17:54:55 17 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [207] 17:54:55 17 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260207) for profiles 17:54:55 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:54:55 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/555) 555 to QC_BAD because CT out of water 17:54:55 17 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.073m) 17:54:55 17 Feb 2017 UTC: INFO: QC.py(365): Changed (9/555) 2 3 180 194 203 208 241 250 554 to QC_PROBABLY_BAD because raw temperature spikes 17:54:55 17 Feb 2017 UTC: INFO: QC.py(377): Changed (1/555) 555 to QC_BAD because raw salinity below bound 17:54:55 17 Feb 2017 UTC: INFO: QC.py(408): Changed (6/555) 180 194 203 208 241 250 to QC_PROBABLY_BAD because raw conductivity spikes 17:54:55 17 Feb 2017 UTC: INFO: QC.py(180): Changed (9/555) 2 3 180 194 203 208 241 250 554 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:54:55 17 Feb 2017 UTC: INFO: QC.py(365): Changed (9/555) 2 3 180 194 203 208 241 250 554 to QC_INTERPOLATED because temperature spikes 17:54:55 17 Feb 2017 UTC: INFO: QC.py(377): Changed (1/555) 555 to QC_BAD because salinity below bound 17:54:55 17 Feb 2017 UTC: INFO: QC.py(408): Changed (6/555) 180 194 203 208 241 250 to QC_INTERPOLATED because conductivity spikes 17:54:55 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/555) 219:223 to QC_BAD because slow apogee CT flow 17:54:55 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/555) 1:6 to QC_BAD because prior to dive start 17:54:55 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/555) 1:6 219:223 555 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:54:55 17 Feb 2017 UTC: INFO: QC.py(180): Changed (12/555) 1:6 219:223 555 to QC_BAD because changed corrected salin implies changed speed 17:54:56 17 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:54:56 17 Feb 2017 UTC: INFO: QC.py(180): Changed (7/555) 180 194 203 208 241 250 554 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 17:54:56 17 Feb 2017 UTC: INFO: QC.py(180): Changed (7/555) 180 194 203 208 241 250 554 to QC_INTERPOLATED because changed corrected temp implies changed speed 17:54:56 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.11 cm/s 17:54:56 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.07 cm/s 17:54:56 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:54:56 17 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (156/555) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:54:56 17 Feb 2017 UTC: INFO: QC.py(180): Changed (4/555) 2 3 241 554 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:54:56 17 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (156/555) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:54:56 17 Feb 2017 UTC: INFO: QC.py(180): Changed (4/555) 2 3 241 554 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:54:56 17 Feb 2017 UTC: INFO: QC.py(180): Changed (12/555) 1:6 219:223 555 to QC_BAD because changed salinity implies changed optode oxygen 17:54:56 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:54:56 17 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:54:56 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:54:56 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 207: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.16% reduction 17:54:56 17 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.207 17:54:56 17 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:54:56 17 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:54:56 17 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:54:56 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:54:56 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:56:30 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 17:56:31 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:56:31 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:56:48 17 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:56:48 17 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:56:48 17 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:56:48 17 Feb 2017 UTC /home/sg626/p6260207.log /home/sg626/p6260207.eng /home/sg626/p6260207.asc /home/sg626/p6260207.pro /home/sg626/p6260207.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:56:48 17 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:56:48 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:56:48 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:56:48 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:56:48 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:56:48 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:56:48 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:56:48 17 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:56:48 17 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:56:48 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:56:48 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:56:48 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:56:48 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:56:48 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:56:48 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:56:48 17 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:56:48 17 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:56:48 17 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:56:48 17 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:56:48 17 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:56:48 17 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:56:48 17 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:56:48 17 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:56:48 17 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 17:56:48 17 Feb 2017 UTC 20:58:24 17 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 12696 20:58:24 17 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:01:06 17 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 13143 21:01:06 17 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:01:06 17 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:01:06 17 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:01:06 17 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:01:06 17 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170217110105 ] 21:01:06 17 Feb 2017 UTC: INFO: Base.py(1333): PID:13150 21:01:06 17 Feb 2017 UTC: INFO: Base.py(1375): Started processing 21:01:06 17 Feb 2017 UTC 21:01:06 17 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:01:07 17 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:01:07 17 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:01:07 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:01:07 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:208 calls_made:1 call_cycle:0 21:01:07 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:01:07 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:208 calls_made:1 call_cycle:0 21:01:07 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:01:07 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:208 calls_made:1 call_cycle:0 21:01:07 17 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:208 calls_made:1 call_cycle:0 2328.2380 -15653.1330 02/17/17 20:56:23 UTC) to sdrifter@soest.hawaii.edu 21:01:07 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:208 calls_made:1 call_cycle:0 21:01:07 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:01:07 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:208 calls_made:1 call_cycle:0 21:01:07 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:01:07 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:208 calls_made:1 call_cycle:0 21:01:07 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:01:07 17 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:208 calls_made:1 call_cycle:0 21:01:07 17 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:01:07 17 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:01:10 17 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:01:11 17 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:01:11 17 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:01:11 17 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:01:11 17 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:01:11 17 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:01:12 17 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0208lz 21:01:12 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0208lz.x00 21:01:12 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0208lz.x01 21:01:12 17 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0208lz.r in process_file_group 21:01:12 17 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260208.log 21:01:12 17 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:01:12 17 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0208dz 21:01:12 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0208dz.x00 21:01:12 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0208dz.x01 21:01:12 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0208dz.x02 21:01:12 17 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0208dz.x03 21:01:12 17 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0208dz.r in process_file_group 21:01:12 17 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [208] 21:01:12 17 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [208] 21:01:12 17 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260208) for profiles 21:01:12 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:01:12 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/564) 564 to QC_BAD because CT out of water 21:01:12 17 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.015m) 21:01:12 17 Feb 2017 UTC: INFO: QC.py(365): Changed (7/564) 174 201 219 243 244 248 249 to QC_PROBABLY_BAD because raw temperature spikes 21:01:12 17 Feb 2017 UTC: INFO: QC.py(408): Changed (7/564) 174 186 201 232 243 248 249 to QC_PROBABLY_BAD because raw conductivity spikes 21:01:12 17 Feb 2017 UTC: INFO: QC.py(180): Changed (7/564) 174 201 219 243 244 248 249 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:01:12 17 Feb 2017 UTC: INFO: QC.py(180): Changed (2/564) 186 232 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 21:01:12 17 Feb 2017 UTC: INFO: QC.py(180): Changed (1/564) 564 to QC_BAD because changed raw cond implies changed raw salinity 21:01:12 17 Feb 2017 UTC: INFO: QC.py(365): Changed (7/564) 174 201 219 243 244 248 249 to QC_INTERPOLATED because temperature spikes 21:01:12 17 Feb 2017 UTC: INFO: QC.py(408): Changed (7/564) 174 186 201 232 243 248 249 to QC_INTERPOLATED because conductivity spikes 21:01:12 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/564) 217:221 to QC_BAD because slow apogee CT flow 21:01:12 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/564) 1:6 to QC_BAD because prior to dive start 21:01:12 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/564) 1:6 217:221 564 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:01:12 17 Feb 2017 UTC: INFO: QC.py(180): Changed (12/564) 1:6 217:221 564 to QC_BAD because changed corrected salin implies changed speed 21:01:12 17 Feb 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 563 21:01:13 17 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:01:13 17 Feb 2017 UTC: INFO: QC.py(180): Changed (6/564) 174 201 243 244 248 249 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 21:01:13 17 Feb 2017 UTC: INFO: QC.py(180): Changed (2/564) 186 232 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 21:01:13 17 Feb 2017 UTC: INFO: QC.py(180): Changed (6/564) 174 201 243 244 248 249 to QC_INTERPOLATED because changed corrected temp implies changed speed 21:01:13 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.86 cm/s 21:01:13 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.06 cm/s 21:01:13 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:01:13 17 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/564) 119 120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:01:13 17 Feb 2017 UTC: INFO: QC.py(180): Changed (1/564) 201 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:01:13 17 Feb 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/564) 563 to QC_BAD because slow flow in SBE43 21:01:13 17 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/564) 119 120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:01:13 17 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/564) 562 to QC_BAD because bad aa4330 oyxgen 21:01:13 17 Feb 2017 UTC: INFO: QC.py(180): Changed (1/564) 201 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:01:13 17 Feb 2017 UTC: INFO: QC.py(180): Changed (12/564) 1:6 217:221 564 to QC_BAD because changed salinity implies changed optode oxygen 21:01:13 17 Feb 2017 UTC: INFO: QC.py(180): Changed (1/564) 186 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 21:01:13 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:01:13 17 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:01:13 17 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:01:13 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 208: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.13% reduction 21:01:13 17 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.208 21:01:13 17 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:01:13 17 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:01:13 17 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:01:13 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:01:13 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 21:02:47 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 21:02:48 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 21:02:48 17 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 21:03:05 17 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:03:05 17 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:03:05 17 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:03:05 17 Feb 2017 UTC /home/sg626/p6260208.log /home/sg626/p6260208.eng /home/sg626/p6260208.asc /home/sg626/p6260208.pro /home/sg626/p6260208.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 21:03:05 17 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:03:05 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:03:05 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:03:05 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:03:05 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:03:05 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:03:05 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:03:05 17 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:03:05 17 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:03:05 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:03:05 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:03:05 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:03:05 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:03:05 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:03:05 17 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:03:05 17 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:03:05 17 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:03:05 17 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:03:05 17 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:03:05 17 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:03:05 17 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:03:05 17 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:03:05 17 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:03:05 17 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 21:03:05 17 Feb 2017 UTC 00:09:59 18 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 19168 00:09:59 18 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:12:57 18 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 19446 00:12:57 18 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:12:57 18 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:12:57 18 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:12:57 18 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:12:57 18 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170217141257 ] 00:12:57 18 Feb 2017 UTC: INFO: Base.py(1333): PID:19453 00:12:57 18 Feb 2017 UTC: INFO: Base.py(1375): Started processing 00:12:57 18 Feb 2017 UTC 00:12:57 18 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:12:58 18 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:12:58 18 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:12:58 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:12:58 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:209 calls_made:1 call_cycle:0 00:12:58 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:12:58 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:209 calls_made:1 call_cycle:0 00:12:58 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:12:58 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:209 calls_made:1 call_cycle:0 00:12:58 18 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:209 calls_made:1 call_cycle:0 2328.6150 -15651.4970 02/18/17 00:08:00 UTC) to sdrifter@soest.hawaii.edu 00:12:58 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:209 calls_made:1 call_cycle:0 00:12:58 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:12:58 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:209 calls_made:1 call_cycle:0 00:12:58 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:12:58 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:209 calls_made:1 call_cycle:0 00:12:58 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:12:58 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:209 calls_made:1 call_cycle:0 00:12:58 18 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:12:58 18 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:13:02 18 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:13:02 18 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:13:02 18 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:13:02 18 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:13:02 18 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:13:02 18 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:13:03 18 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0209lz 00:13:03 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0209lz.x00 00:13:03 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0209lz.x01 00:13:03 18 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0209lz.r in process_file_group 00:13:03 18 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260209.log 00:13:03 18 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:13:03 18 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0209dz 00:13:03 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0209dz.x00 00:13:03 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0209dz.x01 00:13:03 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0209dz.x02 00:13:03 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0209dz.x03 00:13:03 18 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0209dz.r in process_file_group 00:13:04 18 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [209] 00:13:04 18 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [209] 00:13:04 18 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260209) for profiles 00:13:04 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 00:13:04 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/594) 593 594 to QC_BAD because CT out of water 00:13:04 18 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.046m) 00:13:04 18 Feb 2017 UTC: INFO: QC.py(365): Changed (5/594) 2 187 188 190 593 to QC_PROBABLY_BAD because raw temperature spikes 00:13:04 18 Feb 2017 UTC: INFO: QC.py(377): Changed (1/594) 594 to QC_BAD because raw salinity below bound 00:13:04 18 Feb 2017 UTC: INFO: QC.py(408): Changed (5/594) 187 188 190 201 202 to QC_PROBABLY_BAD because raw conductivity spikes 00:13:04 18 Feb 2017 UTC: INFO: QC.py(180): Changed (5/594) 2 187 188 190 593 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:13:04 18 Feb 2017 UTC: INFO: QC.py(180): Changed (2/594) 201 202 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 00:13:04 18 Feb 2017 UTC: INFO: QC.py(180): Changed (1/594) 593 to QC_BAD because changed raw cond implies changed raw salinity 00:13:04 18 Feb 2017 UTC: INFO: QC.py(365): Changed (5/594) 2 187 188 190 593 to QC_INTERPOLATED because temperature spikes 00:13:04 18 Feb 2017 UTC: INFO: QC.py(377): Changed (1/594) 594 to QC_BAD because salinity below bound 00:13:04 18 Feb 2017 UTC: INFO: QC.py(408): Changed (5/594) 187 188 190 201 202 to QC_INTERPOLATED because conductivity spikes 00:13:04 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/594) 230:235 to QC_BAD because slow apogee CT flow 00:13:04 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/594) 1:6 to QC_BAD because prior to dive start 00:13:04 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/594) 592 to QC_BAD because end of climb 00:13:04 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/594) 1:6 230:235 592:594 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:13:04 18 Feb 2017 UTC: INFO: QC.py(180): Changed (15/594) 1:6 230:235 592:594 to QC_BAD because changed corrected salin implies changed speed 00:13:04 18 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:13:04 18 Feb 2017 UTC: INFO: QC.py(180): Changed (3/594) 187 188 190 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 00:13:04 18 Feb 2017 UTC: INFO: QC.py(180): Changed (2/594) 201 202 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 00:13:04 18 Feb 2017 UTC: INFO: QC.py(180): Changed (3/594) 187 188 190 to QC_INTERPOLATED because changed corrected temp implies changed speed 00:13:04 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.88 cm/s 00:13:04 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.00 cm/s 00:13:04 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:13:04 18 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (162/594) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:13:04 18 Feb 2017 UTC: INFO: QC.py(180): Changed (2/594) 2 593 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:13:04 18 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (162/594) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 00:13:04 18 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/594) 5 to QC_BAD because bad aa4330 oyxgen 00:13:05 18 Feb 2017 UTC: INFO: QC.py(180): Changed (2/594) 2 593 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:13:05 18 Feb 2017 UTC: INFO: QC.py(180): Changed (14/594) 1:4 6 230:235 592:594 to QC_BAD because changed salinity implies changed optode oxygen 00:13:05 18 Feb 2017 UTC: INFO: QC.py(180): Changed (1/594) 201 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 00:13:05 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:13:05 18 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:13:05 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 00:13:05 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 209: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.53% reduction 00:13:05 18 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.209 00:13:05 18 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:13:05 18 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:13:05 18 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:13:05 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 00:13:05 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 00:14:40 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 00:14:41 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 00:14:41 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 00:14:58 18 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:14:58 18 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:14:58 18 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:14:58 18 Feb 2017 UTC /home/sg626/p6260209.log /home/sg626/p6260209.eng /home/sg626/p6260209.asc /home/sg626/p6260209.pro /home/sg626/p6260209.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 00:14:58 18 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:14:58 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:14:58 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:14:58 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:14:58 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:14:58 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:14:58 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:14:58 18 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:14:58 18 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:14:58 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:14:58 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:14:58 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:14:58 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:14:58 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:14:58 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:14:58 18 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:14:58 18 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:14:58 18 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:14:58 18 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:14:58 18 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:14:58 18 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:14:58 18 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:14:58 18 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:14:58 18 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 00:14:58 18 Feb 2017 UTC 03:19:06 18 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 24476 03:19:06 18 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:21:47 18 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 24681 03:21:47 18 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:21:47 18 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:21:47 18 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:21:47 18 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:21:47 18 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170217172147 ] 03:21:47 18 Feb 2017 UTC: INFO: Base.py(1333): PID:24688 03:21:47 18 Feb 2017 UTC: INFO: Base.py(1375): Started processing 03:21:47 18 Feb 2017 UTC 03:21:47 18 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:21:48 18 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:21:48 18 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:21:48 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:21:48 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:210 calls_made:1 call_cycle:0 03:21:48 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:21:48 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:210 calls_made:1 call_cycle:0 03:21:48 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:21:48 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:210 calls_made:1 call_cycle:0 03:21:48 18 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:210 calls_made:1 call_cycle:0 2328.9210 -15649.6810 02/18/17 03:17:07 UTC) to sdrifter@soest.hawaii.edu 03:21:48 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:210 calls_made:1 call_cycle:0 03:21:48 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:21:48 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:210 calls_made:1 call_cycle:0 03:21:48 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:21:48 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:210 calls_made:1 call_cycle:0 03:21:48 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:21:48 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:210 calls_made:1 call_cycle:0 03:21:48 18 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:21:48 18 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:21:52 18 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:21:52 18 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:21:52 18 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:21:52 18 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:21:52 18 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:21:52 18 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:21:53 18 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0210lz 03:21:53 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0210lz.x00 03:21:53 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0210lz.x01 03:21:53 18 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0210lz.r in process_file_group 03:21:53 18 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260210.log 03:21:53 18 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:21:53 18 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0210dz 03:21:53 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0210dz.x00 03:21:53 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0210dz.x01 03:21:53 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0210dz.x02 03:21:53 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0210dz.x03 03:21:53 18 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0210dz.r in process_file_group 03:21:54 18 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [210] 03:21:54 18 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [210] 03:21:54 18 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260210) for profiles 03:21:54 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 03:21:54 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/581) 579:581 to QC_BAD because CT out of water 03:21:54 18 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.044m) 03:21:54 18 Feb 2017 UTC: INFO: QC.py(365): Changed (8/581) 2 4 197 200 227 245:247 to QC_PROBABLY_BAD because raw temperature spikes 03:21:54 18 Feb 2017 UTC: INFO: QC.py(377): Changed (2/581) 580 581 to QC_BAD because raw salinity below bound 03:21:54 18 Feb 2017 UTC: INFO: QC.py(408): Changed (5/581) 197 200 245:247 to QC_PROBABLY_BAD because raw conductivity spikes 03:21:54 18 Feb 2017 UTC: INFO: QC.py(180): Changed (8/581) 2 4 197 200 227 245:247 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 03:21:54 18 Feb 2017 UTC: INFO: QC.py(180): Changed (1/581) 579 to QC_BAD because changed raw cond implies changed raw salinity 03:21:54 18 Feb 2017 UTC: INFO: QC.py(365): Changed (8/581) 2 4 197 200 227 245:247 to QC_INTERPOLATED because temperature spikes 03:21:54 18 Feb 2017 UTC: INFO: QC.py(377): Changed (2/581) 580 581 to QC_BAD because salinity below bound 03:21:54 18 Feb 2017 UTC: INFO: QC.py(408): Changed (5/581) 197 200 245:247 to QC_INTERPOLATED because conductivity spikes 03:21:54 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/581) 226:231 to QC_BAD because slow apogee CT flow 03:21:54 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/581) 1:6 to QC_BAD because prior to dive start 03:21:54 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/581) 578 to QC_BAD because end of climb 03:21:54 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/581) 1:6 226:231 578:581 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:21:54 18 Feb 2017 UTC: INFO: QC.py(180): Changed (16/581) 1:6 226:231 578:581 to QC_BAD because changed corrected salin implies changed speed 03:21:54 18 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 03:21:54 18 Feb 2017 UTC: INFO: QC.py(180): Changed (5/581) 197 200 245:247 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 03:21:54 18 Feb 2017 UTC: INFO: QC.py(180): Changed (5/581) 197 200 245:247 to QC_INTERPOLATED because changed corrected temp implies changed speed 03:21:54 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.83 cm/s 03:21:54 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.13 cm/s 03:21:54 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:21:54 18 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/581) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:21:54 18 Feb 2017 UTC: INFO: QC.py(180): Changed (3/581) 2 4 246 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:21:54 18 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/581) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 03:21:54 18 Feb 2017 UTC: INFO: QC.py(180): Changed (3/581) 2 4 246 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 03:21:54 18 Feb 2017 UTC: INFO: QC.py(180): Changed (16/581) 1:6 226:231 578:581 to QC_BAD because changed salinity implies changed optode oxygen 03:21:54 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:21:54 18 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:21:54 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 03:21:55 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 210: Data set size for profile, binned and kkyy files reduced by 16 points, a 2.75% reduction 03:21:55 18 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.210 03:21:55 18 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:21:55 18 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:21:55 18 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:21:55 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 03:21:55 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 03:23:31 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 03:23:32 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 03:23:32 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 03:23:49 18 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:23:49 18 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:23:49 18 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:23:49 18 Feb 2017 UTC /home/sg626/p6260210.log /home/sg626/p6260210.eng /home/sg626/p6260210.asc /home/sg626/p6260210.pro /home/sg626/p6260210.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 03:23:49 18 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:23:49 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:23:49 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:23:49 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:23:49 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:23:49 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:23:49 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:23:49 18 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:23:49 18 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:23:49 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:23:49 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:23:49 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:23:49 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:23:49 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:23:49 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:23:49 18 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:23:49 18 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:23:49 18 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:23:49 18 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:23:49 18 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:23:49 18 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:23:49 18 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:23:49 18 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:23:49 18 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 03:23:49 18 Feb 2017 UTC 06:26:32 18 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 30019 06:26:32 18 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:29:15 18 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 30135 06:29:15 18 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:29:15 18 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 06:29:15 18 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 06:29:15 18 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:29:15 18 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170217202915 ] 06:29:15 18 Feb 2017 UTC: INFO: Base.py(1333): PID:30143 06:29:15 18 Feb 2017 UTC: INFO: Base.py(1375): Started processing 06:29:15 18 Feb 2017 UTC 06:29:15 18 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 06:29:16 18 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 06:29:16 18 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:29:16 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:29:16 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:211 calls_made:1 call_cycle:0 06:29:16 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:29:16 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:211 calls_made:1 call_cycle:0 06:29:16 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:29:16 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:211 calls_made:1 call_cycle:0 06:29:16 18 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:211 calls_made:1 call_cycle:0 2329.3200 -15647.7170 02/18/17 06:24:30 UTC) to sdrifter@soest.hawaii.edu 06:29:16 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:211 calls_made:1 call_cycle:0 06:29:16 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:29:16 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:211 calls_made:1 call_cycle:0 06:29:16 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:29:16 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:211 calls_made:1 call_cycle:0 06:29:16 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:29:16 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:211 calls_made:1 call_cycle:0 06:29:16 18 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:29:16 18 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:29:20 18 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:29:20 18 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:29:20 18 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 06:29:20 18 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:29:20 18 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:29:20 18 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 06:29:21 18 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0211lz 06:29:21 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0211lz.x00 06:29:21 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0211lz.x01 06:29:21 18 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0211lz.r in process_file_group 06:29:21 18 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260211.log 06:29:21 18 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 06:29:21 18 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0211dz 06:29:21 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0211dz.x00 06:29:21 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0211dz.x01 06:29:21 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0211dz.x02 06:29:21 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0211dz.x03 06:29:21 18 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0211dz.r in process_file_group 06:29:21 18 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [211] 06:29:21 18 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [211] 06:29:22 18 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260211) for profiles 06:29:22 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 06:29:22 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/580) 580 to QC_BAD because CT out of water 06:29:22 18 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.054m) 06:29:22 18 Feb 2017 UTC: INFO: QC.py(365): Changed (4/580) 2 4 196 228 to QC_PROBABLY_BAD because raw temperature spikes 06:29:22 18 Feb 2017 UTC: INFO: QC.py(377): Changed (1/580) 580 to QC_BAD because raw salinity below bound 06:29:22 18 Feb 2017 UTC: INFO: QC.py(408): Changed (2/580) 196 198 to QC_PROBABLY_BAD because raw conductivity spikes 06:29:22 18 Feb 2017 UTC: INFO: QC.py(180): Changed (4/580) 2 4 196 228 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 06:29:22 18 Feb 2017 UTC: INFO: QC.py(180): Changed (1/580) 198 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 06:29:22 18 Feb 2017 UTC: INFO: QC.py(365): Changed (4/580) 2 4 196 228 to QC_INTERPOLATED because temperature spikes 06:29:22 18 Feb 2017 UTC: INFO: QC.py(377): Changed (1/580) 580 to QC_BAD because salinity below bound 06:29:22 18 Feb 2017 UTC: INFO: QC.py(408): Changed (2/580) 196 198 to QC_INTERPOLATED because conductivity spikes 06:29:22 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/580) 226:230 to QC_BAD because slow apogee CT flow 06:29:22 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/580) 1:6 to QC_BAD because prior to dive start 06:29:22 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/580) 1:6 226:230 580 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 06:29:22 18 Feb 2017 UTC: INFO: QC.py(180): Changed (12/580) 1:6 226:230 580 to QC_BAD because changed corrected salin implies changed speed 06:29:22 18 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 06:29:22 18 Feb 2017 UTC: INFO: QC.py(180): Changed (1/580) 196 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 06:29:22 18 Feb 2017 UTC: INFO: QC.py(180): Changed (1/580) 198 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 06:29:22 18 Feb 2017 UTC: INFO: QC.py(180): Changed (1/580) 196 to QC_INTERPOLATED because changed corrected temp implies changed speed 06:29:22 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.69 cm/s 06:29:22 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.21 cm/s 06:29:22 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 06:29:22 18 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (159/580) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 06:29:22 18 Feb 2017 UTC: INFO: QC.py(180): Changed (3/580) 2 4 196 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 06:29:22 18 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (159/580) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 06:29:22 18 Feb 2017 UTC: INFO: QC.py(180): Changed (3/580) 2 4 196 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 06:29:22 18 Feb 2017 UTC: INFO: QC.py(180): Changed (12/580) 1:6 226:230 580 to QC_BAD because changed salinity implies changed optode oxygen 06:29:22 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 06:29:22 18 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 06:29:22 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 06:29:23 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 211: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.07% reduction 06:29:23 18 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.211 06:29:23 18 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:29:23 18 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:29:23 18 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:29:23 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 06:29:23 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 06:30:59 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 06:31:00 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 06:31:00 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 06:31:18 18 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:31:18 18 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:31:18 18 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 06:31:18 18 Feb 2017 UTC /home/sg626/p6260211.log /home/sg626/p6260211.eng /home/sg626/p6260211.asc /home/sg626/p6260211.pro /home/sg626/p6260211.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 06:31:18 18 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:31:18 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:31:18 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:31:18 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:31:18 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:31:18 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:31:18 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:31:18 18 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:31:18 18 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:31:18 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:31:18 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:31:18 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:31:18 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:31:18 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:31:18 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:31:18 18 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:31:18 18 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 06:31:18 18 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 06:31:18 18 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 06:31:18 18 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 06:31:18 18 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:31:18 18 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:31:18 18 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:31:18 18 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 06:31:18 18 Feb 2017 UTC 09:39:00 18 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 3695 09:39:00 18 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:41:44 18 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 3910 09:41:44 18 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:41:44 18 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:41:44 18 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:41:44 18 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:41:44 18 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170217234143 ] 09:41:44 18 Feb 2017 UTC: INFO: Base.py(1333): PID:3917 09:41:44 18 Feb 2017 UTC: INFO: Base.py(1375): Started processing 09:41:44 18 Feb 2017 UTC 09:41:44 18 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:41:45 18 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:41:45 18 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:41:45 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:41:45 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:212 calls_made:1 call_cycle:0 09:41:45 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:41:45 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:212 calls_made:1 call_cycle:0 09:41:45 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:41:45 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:212 calls_made:1 call_cycle:0 09:41:45 18 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:212 calls_made:1 call_cycle:0 2329.4670 -15645.4930 02/18/17 09:36:58 UTC) to sdrifter@soest.hawaii.edu 09:41:45 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:212 calls_made:1 call_cycle:0 09:41:45 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:41:45 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:212 calls_made:1 call_cycle:0 09:41:45 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:41:45 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:212 calls_made:1 call_cycle:0 09:41:45 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:41:45 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:212 calls_made:1 call_cycle:0 09:41:45 18 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:41:45 18 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:41:48 18 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:41:49 18 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:41:49 18 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:41:49 18 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:41:49 18 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:41:49 18 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:41:50 18 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0212lz 09:41:50 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0212lz.x00 09:41:50 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0212lz.x01 09:41:50 18 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0212lz.r in process_file_group 09:41:50 18 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260212.log 09:41:50 18 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:41:50 18 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0212dz 09:41:50 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0212dz.x00 09:41:50 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0212dz.x01 09:41:50 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0212dz.x02 09:41:50 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0212dz.x03 09:41:50 18 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0212dz.r in process_file_group 09:41:50 18 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [212] 09:41:50 18 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [212] 09:41:50 18 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260212) for profiles 09:41:50 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 09:41:50 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/600) 599 to QC_BAD because CT out of water 09:41:50 18 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.007m) 09:41:50 18 Feb 2017 UTC: INFO: QC.py(365): Changed (6/600) 2 3 187 226 246 599 to QC_PROBABLY_BAD because raw temperature spikes 09:41:50 18 Feb 2017 UTC: INFO: QC.py(377): Changed (1/600) 599 to QC_BAD because raw salinity below bound 09:41:50 18 Feb 2017 UTC: INFO: QC.py(408): Changed (2/600) 246 598 to QC_PROBABLY_BAD because raw conductivity spikes 09:41:50 18 Feb 2017 UTC: INFO: QC.py(180): Changed (5/600) 2 3 187 226 246 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 09:41:50 18 Feb 2017 UTC: INFO: QC.py(180): Changed (1/600) 598 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 09:41:50 18 Feb 2017 UTC: INFO: QC.py(365): Changed (6/600) 2 3 187 226 246 599 to QC_INTERPOLATED because temperature spikes 09:41:50 18 Feb 2017 UTC: INFO: QC.py(377): Changed (1/600) 599 to QC_BAD because salinity below bound 09:41:50 18 Feb 2017 UTC: INFO: QC.py(408): Changed (2/600) 246 598 to QC_INTERPOLATED because conductivity spikes 09:41:50 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/600) 224:228 to QC_BAD because slow apogee CT flow 09:41:50 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/600) 1:6 to QC_BAD because prior to dive start 09:41:50 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/600) 600 to QC_BAD because end of climb 09:41:50 18 Feb 2017 UTC: INFO: QC.py(488): Changed (1/600) 598 to QC_PROBABLY_BAD because bad interpolation anchors 09:41:50 18 Feb 2017 UTC: INFO: QC.py(489): SUGGESTION: 212 bad_conductivity data_points in_between 596 598 % bad interpolation anchors 09:41:50 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/600) 1:6 224:228 599 600 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:41:50 18 Feb 2017 UTC: INFO: QC.py(180): Changed (13/600) 1:6 224:228 599 600 to QC_BAD because changed corrected salin implies changed speed 09:41:51 18 Feb 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 598 09:41:51 18 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:41:51 18 Feb 2017 UTC: INFO: QC.py(180): Changed (2/600) 187 246 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 09:41:51 18 Feb 2017 UTC: INFO: QC.py(180): Changed (1/600) 598 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 09:41:51 18 Feb 2017 UTC: INFO: QC.py(180): Changed (2/600) 187 246 to QC_INTERPOLATED because changed corrected temp implies changed speed 09:41:51 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.32 cm/s 09:41:51 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.95 cm/s 09:41:51 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:41:51 18 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/600) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:41:51 18 Feb 2017 UTC: INFO: QC.py(180): Changed (5/600) 2 3 226 246 599 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:41:51 18 Feb 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/600) 598 to QC_BAD because slow flow in SBE43 09:41:51 18 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/600) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 09:41:51 18 Feb 2017 UTC: INFO: QC.py(180): Changed (5/600) 2 3 226 246 599 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:41:51 18 Feb 2017 UTC: INFO: QC.py(180): Changed (1/600) 598 to QC_PROBABLY_BAD because changed salinity implies changed optode oxygen 09:41:51 18 Feb 2017 UTC: INFO: QC.py(180): Changed (13/600) 1:6 224:228 599 600 to QC_BAD because changed salinity implies changed optode oxygen 09:41:51 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:41:51 18 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:41:51 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 09:41:51 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 212: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.17% reduction 09:41:51 18 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.212 09:41:51 18 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:41:51 18 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:41:51 18 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:41:52 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 09:41:52 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 09:43:28 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 09:43:29 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 09:43:29 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 09:43:46 18 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:43:46 18 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:43:46 18 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:43:46 18 Feb 2017 UTC /home/sg626/p6260212.log /home/sg626/p6260212.eng /home/sg626/p6260212.asc /home/sg626/p6260212.pro /home/sg626/p6260212.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 09:43:46 18 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:43:46 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:43:46 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:43:46 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:43:46 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:43:46 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:43:46 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:43:46 18 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:43:46 18 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:43:46 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:43:46 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:43:46 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:43:46 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:43:46 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:43:46 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:43:46 18 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:43:46 18 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:43:46 18 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:43:46 18 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:43:46 18 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:43:46 18 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:43:46 18 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:43:46 18 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:43:46 18 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 09:43:46 18 Feb 2017 UTC 12:51:54 18 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 10544 12:51:54 18 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:53:37 18 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 10691 12:53:37 18 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:53:37 18 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:53:37 18 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:53:37 18 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:53:37 18 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170218025336 ] 12:53:37 18 Feb 2017 UTC: INFO: Base.py(1333): PID:10698 12:53:37 18 Feb 2017 UTC: INFO: Base.py(1375): Started processing 12:53:37 18 Feb 2017 UTC 12:53:37 18 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:53:38 18 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:53:38 18 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:53:38 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:53:38 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:213 calls_made:1 call_cycle:0 12:53:38 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:53:38 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:213 calls_made:1 call_cycle:0 12:53:38 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:53:38 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:213 calls_made:1 call_cycle:0 12:53:38 18 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:213 calls_made:1 call_cycle:0 2329.4480 -15643.6040 02/18/17 12:49:55 UTC) to sdrifter@soest.hawaii.edu 12:53:38 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:213 calls_made:1 call_cycle:0 12:53:38 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:53:38 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:213 calls_made:1 call_cycle:0 12:53:38 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:53:38 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:213 calls_made:1 call_cycle:0 12:53:38 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:53:38 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:213 calls_made:1 call_cycle:0 12:53:38 18 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:53:38 18 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:53:42 18 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:53:42 18 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:53:42 18 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:53:42 18 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:53:42 18 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:53:42 18 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:53:43 18 Feb 2017 UTC: WARNING: Base.py(1624): No dives to process 12:53:43 18 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [] 12:53:43 18 Feb 2017 UTC: INFO: Base.py(1780): No dives found to profile 12:53:43 18 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.213 12:53:43 18 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:53:43 18 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:53:43 18 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:53:43 18 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:53:43 18 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:53:43 18 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:53:43 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:53:43 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:53:43 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:53:43 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:53:43 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:53:43 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:53:43 18 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:53:43 18 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:53:43 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:53:43 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:53:43 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:53:43 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:53:43 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:53:43 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:53:43 18 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:53:43 18 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 12:53:43 18 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 12:53:43 18 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 12:53:43 18 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 12:53:43 18 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:53:43 18 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:53:43 18 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:53:43 18 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 12:53:43 18 Feb 2017 UTC 12:55:48 18 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 10964 12:55:48 18 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:58:33 18 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 11087 12:58:33 18 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:58:33 18 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:58:33 18 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:58:33 18 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:58:33 18 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170218025832 ] 12:58:33 18 Feb 2017 UTC: INFO: Base.py(1333): PID:11095 12:58:33 18 Feb 2017 UTC: INFO: Base.py(1375): Started processing 12:58:33 18 Feb 2017 UTC 12:58:33 18 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:58:33 18 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:58:33 18 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:58:33 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:58:33 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:213 calls_made:2 call_cycle:0 12:58:33 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:58:33 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:213 calls_made:2 call_cycle:0 12:58:33 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:58:33 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:213 calls_made:2 call_cycle:0 12:58:33 18 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:213 calls_made:2 call_cycle:0 2329.4480 -15643.6040 02/18/17 12:49:55 UTC) to sdrifter@soest.hawaii.edu 12:58:33 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:213 calls_made:2 call_cycle:0 12:58:33 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:58:33 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:213 calls_made:2 call_cycle:0 12:58:33 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:58:33 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:213 calls_made:2 call_cycle:0 12:58:33 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:58:33 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:213 calls_made:2 call_cycle:0 12:58:33 18 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:58:33 18 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:58:37 18 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:58:38 18 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:58:38 18 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:58:38 18 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:58:38 18 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:58:38 18 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:58:39 18 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0213lz 12:58:39 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0213lz.x00 12:58:39 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0213lz.x01 12:58:39 18 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0213lz.r in process_file_group 12:58:39 18 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260213.log 12:58:39 18 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:58:39 18 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0213dz 12:58:39 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0213dz.x00 12:58:39 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0213dz.x01 12:58:39 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0213dz.x02 12:58:39 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0213dz.x03 12:58:39 18 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0213dz.r in process_file_group 12:58:39 18 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [213] 12:58:39 18 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [213] 12:58:39 18 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260213) for profiles 12:58:39 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 12:58:39 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/589) 588 to QC_BAD because CT out of water 12:58:39 18 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.056m) 12:58:39 18 Feb 2017 UTC: INFO: QC.py(377): Changed (1/589) 588 to QC_BAD because raw salinity below bound 12:58:39 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/589) 589 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 12:58:39 18 Feb 2017 UTC: INFO: QC.py(180): Changed (1/589) 589 to QC_BAD because changed raw cond implies changed raw salinity 12:58:39 18 Feb 2017 UTC: INFO: QC.py(377): Changed (1/589) 588 to QC_BAD because salinity below bound 12:58:39 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/589) 589 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 12:58:39 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/589) 229:234 to QC_BAD because slow apogee CT flow 12:58:39 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/589) 1:6 to QC_BAD because prior to dive start 12:58:39 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/589) 1:6 229:234 588 589 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:58:39 18 Feb 2017 UTC: INFO: QC.py(180): Changed (14/589) 1:6 229:234 588 589 to QC_BAD because changed corrected salin implies changed speed 12:58:40 18 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:58:40 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.09 cm/s 12:58:40 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.96 cm/s 12:58:40 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:58:40 18 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (165/589) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:58:40 18 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (165/589) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 12:58:40 18 Feb 2017 UTC: INFO: QC.py(180): Changed (14/589) 1:6 229:234 588 589 to QC_BAD because changed salinity implies changed optode oxygen 12:58:40 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:58:40 18 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:58:40 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 12:58:40 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 213: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.38% reduction 12:58:40 18 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.213 12:58:40 18 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:58:40 18 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:58:40 18 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:58:40 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 12:58:40 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:00:18 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 13:00:19 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:00:19 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:00:37 18 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:00:37 18 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:00:37 18 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:00:37 18 Feb 2017 UTC /home/sg626/p6260213.log /home/sg626/p6260213.eng /home/sg626/p6260213.asc /home/sg626/p6260213.pro /home/sg626/p6260213.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:00:37 18 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:00:37 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:00:37 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:00:37 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:00:37 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:00:37 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:00:37 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:00:37 18 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:00:37 18 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:00:37 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:00:37 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:00:37 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:00:37 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:00:37 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:00:37 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:00:37 18 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:00:37 18 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:00:37 18 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:00:37 18 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:00:37 18 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:00:37 18 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:00:37 18 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:00:37 18 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:00:37 18 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 13:00:37 18 Feb 2017 UTC 16:03:16 18 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 18709 16:03:16 18 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:05:57 18 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 18880 16:05:57 18 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:05:57 18 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:05:57 18 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:05:57 18 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:05:57 18 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170218060556 ] 16:05:57 18 Feb 2017 UTC: INFO: Base.py(1333): PID:18887 16:05:57 18 Feb 2017 UTC: INFO: Base.py(1375): Started processing 16:05:57 18 Feb 2017 UTC 16:05:57 18 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:05:58 18 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:05:58 18 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:05:58 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:05:58 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:214 calls_made:1 call_cycle:0 16:05:58 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:05:58 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:214 calls_made:1 call_cycle:0 16:05:58 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:05:58 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:214 calls_made:1 call_cycle:0 16:05:58 18 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:214 calls_made:1 call_cycle:0 2329.3590 -15642.0920 02/18/17 16:01:16 UTC) to sdrifter@soest.hawaii.edu 16:05:58 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:214 calls_made:1 call_cycle:0 16:05:58 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:05:58 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:214 calls_made:1 call_cycle:0 16:05:58 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:05:58 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:214 calls_made:1 call_cycle:0 16:05:58 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:05:58 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:214 calls_made:1 call_cycle:0 16:05:58 18 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:05:58 18 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:06:02 18 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:06:02 18 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:06:02 18 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:06:02 18 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:06:02 18 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:06:02 18 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:06:03 18 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0214lz 16:06:03 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0214lz.x00 16:06:03 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0214lz.x01 16:06:03 18 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0214lz.r in process_file_group 16:06:03 18 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260214.log 16:06:03 18 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:06:03 18 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0214dz 16:06:03 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0214dz.x00 16:06:03 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0214dz.x01 16:06:03 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0214dz.x02 16:06:03 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0214dz.x03 16:06:03 18 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0214dz.r in process_file_group 16:06:04 18 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [214] 16:06:04 18 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [214] 16:06:04 18 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260214) for profiles 16:06:04 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:06:04 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/589) 588 589 to QC_BAD because CT out of water 16:06:04 18 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.125m) 16:06:04 18 Feb 2017 UTC: INFO: QC.py(365): Changed (3/589) 2 197 198 to QC_PROBABLY_BAD because raw temperature spikes 16:06:04 18 Feb 2017 UTC: INFO: QC.py(377): Changed (1/589) 589 to QC_BAD because raw salinity below bound 16:06:04 18 Feb 2017 UTC: INFO: QC.py(408): Changed (1/589) 2 to QC_PROBABLY_BAD because raw conductivity spikes 16:06:04 18 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(963): Restarting anomaly after 249.30m: -0.2807 at 469.59m (176) 16:06:04 18 Feb 2017 UTC: INFO: QC.py(180): Changed (3/589) 2 197 198 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:06:04 18 Feb 2017 UTC: INFO: QC.py(180): Changed (1/589) 588 to QC_BAD because changed raw cond implies changed raw salinity 16:06:04 18 Feb 2017 UTC: INFO: QC.py(365): Changed (3/589) 2 197 198 to QC_INTERPOLATED because temperature spikes 16:06:04 18 Feb 2017 UTC: INFO: QC.py(377): Changed (1/589) 589 to QC_BAD because salinity below bound 16:06:04 18 Feb 2017 UTC: INFO: QC.py(408): Changed (1/589) 2 to QC_INTERPOLATED because conductivity spikes 16:06:04 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/589) 224:228 to QC_BAD because slow apogee CT flow 16:06:04 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/589) 1:6 to QC_BAD because prior to dive start 16:06:04 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/589) 587 to QC_BAD because end of climb 16:06:04 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/589) 1:6 224:228 587:589 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:06:04 18 Feb 2017 UTC: INFO: QC.py(180): Changed (14/589) 1:6 224:228 587:589 to QC_BAD because changed corrected salin implies changed speed 16:06:04 18 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:06:04 18 Feb 2017 UTC: INFO: QC.py(180): Changed (2/589) 197 198 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 16:06:04 18 Feb 2017 UTC: INFO: QC.py(180): Changed (2/589) 197 198 to QC_INTERPOLATED because changed corrected temp implies changed speed 16:06:04 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.03 cm/s 16:06:04 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.17 cm/s 16:06:04 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:06:04 18 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (157/589) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:06:04 18 Feb 2017 UTC: INFO: QC.py(180): Changed (1/589) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:06:04 18 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (157/589) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:06:04 18 Feb 2017 UTC: INFO: QC.py(180): Changed (1/589) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:06:04 18 Feb 2017 UTC: INFO: QC.py(180): Changed (14/589) 1:6 224:228 587:589 to QC_BAD because changed salinity implies changed optode oxygen 16:06:04 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:06:04 18 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:06:04 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:06:05 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 214: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.38% reduction 16:06:05 18 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.214 16:06:05 18 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:06:05 18 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:06:05 18 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:06:05 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:06:05 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:07:43 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 16:07:43 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:07:43 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:08:01 18 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:08:01 18 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:08:01 18 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:08:01 18 Feb 2017 UTC /home/sg626/p6260214.log /home/sg626/p6260214.eng /home/sg626/p6260214.asc /home/sg626/p6260214.pro /home/sg626/p6260214.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:08:01 18 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:08:01 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:08:01 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:08:01 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:08:01 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:08:01 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:08:01 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:08:01 18 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:08:01 18 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:08:01 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:08:01 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:08:01 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:08:01 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:08:01 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:08:01 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:08:01 18 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:08:01 18 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:08:01 18 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:08:01 18 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:08:01 18 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:08:01 18 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:08:01 18 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:08:01 18 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:08:01 18 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 16:08:01 18 Feb 2017 UTC 19:15:27 18 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 24880 19:15:27 18 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:18:06 18 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 25037 19:18:06 18 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:18:06 18 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:18:06 18 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:18:06 18 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:18:06 18 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170218091806 ] 19:18:06 18 Feb 2017 UTC: INFO: Base.py(1333): PID:25047 19:18:06 18 Feb 2017 UTC: INFO: Base.py(1375): Started processing 19:18:06 18 Feb 2017 UTC 19:18:06 18 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:18:07 18 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:18:07 18 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:18:07 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:18:07 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:215 calls_made:1 call_cycle:0 19:18:07 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:18:07 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:215 calls_made:1 call_cycle:0 19:18:07 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:18:07 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:215 calls_made:1 call_cycle:0 19:18:07 18 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:215 calls_made:1 call_cycle:0 2329.6660 -15640.6850 02/18/17 19:13:27 UTC) to sdrifter@soest.hawaii.edu 19:18:07 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:215 calls_made:1 call_cycle:0 19:18:07 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:18:07 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:215 calls_made:1 call_cycle:0 19:18:07 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:18:07 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:215 calls_made:1 call_cycle:0 19:18:07 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:18:07 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:215 calls_made:1 call_cycle:0 19:18:07 18 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:18:07 18 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:18:11 18 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:18:11 18 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:18:11 18 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:18:11 18 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:18:11 18 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:18:11 18 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:18:12 18 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0215lz 19:18:12 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0215lz.x00 19:18:12 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0215lz.x01 19:18:12 18 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0215lz.r in process_file_group 19:18:12 18 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260215.log 19:18:12 18 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:18:12 18 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0215dz 19:18:12 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0215dz.x00 19:18:12 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0215dz.x01 19:18:12 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0215dz.x02 19:18:12 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0215dz.x03 19:18:12 18 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0215dz.r in process_file_group 19:18:13 18 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [215] 19:18:13 18 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [215] 19:18:13 18 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260215) for profiles 19:18:13 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 19:18:13 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/591) 591 to QC_BAD because CT out of water 19:18:13 18 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.036m) 19:18:13 18 Feb 2017 UTC: INFO: QC.py(365): Changed (8/591) 2 3 208 233 250 257 258 590 to QC_PROBABLY_BAD because raw temperature spikes 19:18:13 18 Feb 2017 UTC: INFO: QC.py(408): Changed (2/591) 257 258 to QC_PROBABLY_BAD because raw conductivity spikes 19:18:13 18 Feb 2017 UTC: INFO: QC.py(180): Changed (8/591) 2 3 208 233 250 257 258 590 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:18:13 18 Feb 2017 UTC: INFO: QC.py(180): Changed (1/591) 591 to QC_BAD because changed raw cond implies changed raw salinity 19:18:13 18 Feb 2017 UTC: INFO: QC.py(365): Changed (8/591) 2 3 208 233 250 257 258 590 to QC_INTERPOLATED because temperature spikes 19:18:13 18 Feb 2017 UTC: INFO: QC.py(408): Changed (2/591) 257 258 to QC_INTERPOLATED because conductivity spikes 19:18:13 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/591) 231:235 to QC_BAD because slow apogee CT flow 19:18:13 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/591) 1:6 to QC_BAD because prior to dive start 19:18:13 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/591) 1:6 231:235 591 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:18:13 18 Feb 2017 UTC: INFO: QC.py(180): Changed (12/591) 1:6 231:235 591 to QC_BAD because changed corrected salin implies changed speed 19:18:14 18 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:18:14 18 Feb 2017 UTC: INFO: QC.py(180): Changed (5/591) 208 250 257 258 590 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 19:18:14 18 Feb 2017 UTC: INFO: QC.py(180): Changed (5/591) 208 250 257 258 590 to QC_INTERPOLATED because changed corrected temp implies changed speed 19:18:14 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.07 cm/s 19:18:14 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.24 cm/s 19:18:14 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:18:14 18 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (162/591) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:18:14 18 Feb 2017 UTC: INFO: QC.py(180): Changed (3/591) 2 3 590 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 19:18:14 18 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (162/591) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 19:18:14 18 Feb 2017 UTC: INFO: QC.py(180): Changed (3/591) 2 3 590 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 19:18:14 18 Feb 2017 UTC: INFO: QC.py(180): Changed (12/591) 1:6 231:235 591 to QC_BAD because changed salinity implies changed optode oxygen 19:18:14 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:18:14 18 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:18:14 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 19:18:14 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 215: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.03% reduction 19:18:14 18 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.215 19:18:14 18 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:18:14 18 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:18:14 18 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:18:14 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 19:18:14 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 19:19:52 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 19:19:53 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 19:19:53 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 19:20:11 18 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:20:11 18 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:20:11 18 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:20:11 18 Feb 2017 UTC /home/sg626/p6260215.log /home/sg626/p6260215.eng /home/sg626/p6260215.asc /home/sg626/p6260215.pro /home/sg626/p6260215.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 19:20:11 18 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:20:11 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:20:11 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:20:11 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:20:11 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:20:11 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:20:11 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:20:11 18 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:20:11 18 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:20:11 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:20:11 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:20:11 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:20:11 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:20:11 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:20:11 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:20:11 18 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:20:11 18 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:20:11 18 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:20:11 18 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:20:11 18 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:20:11 18 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:20:11 18 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:20:11 18 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:20:11 18 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 19:20:11 18 Feb 2017 UTC 22:23:59 18 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 1736 22:23:59 18 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:25:57 18 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 1884 22:25:57 18 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:25:57 18 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:25:57 18 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:25:57 18 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:25:57 18 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170218122557 ] 22:25:57 18 Feb 2017 UTC: INFO: Base.py(1333): PID:1893 22:25:57 18 Feb 2017 UTC: INFO: Base.py(1375): Started processing 22:25:57 18 Feb 2017 UTC 22:25:57 18 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:25:58 18 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:25:58 18 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:25:58 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:25:58 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:216 calls_made:1 call_cycle:0 22:25:58 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:25:58 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:216 calls_made:1 call_cycle:0 22:25:58 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:25:58 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:216 calls_made:1 call_cycle:0 22:25:58 18 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:216 calls_made:1 call_cycle:0 2330.0580 -15639.0360 02/18/17 22:21:54 UTC) to sdrifter@soest.hawaii.edu 22:25:58 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:216 calls_made:1 call_cycle:0 22:25:58 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:25:58 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:216 calls_made:1 call_cycle:0 22:25:58 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:25:58 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:216 calls_made:1 call_cycle:0 22:25:58 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:25:58 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:216 calls_made:1 call_cycle:0 22:25:58 18 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:25:58 18 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:26:02 18 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:26:03 18 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:26:03 18 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:26:03 18 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:26:03 18 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:26:03 18 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:26:04 18 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0216lz 22:26:04 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0216lz.x00 22:26:04 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0216lz.x01 22:26:04 18 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0216lz.r in process_file_group 22:26:04 18 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260216.log 22:26:04 18 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 22:26:04 18 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0216dz 22:26:04 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0216dz.x00 22:26:04 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0216dz.x01 22:26:04 18 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0216dz.r in process_file_group 22:26:04 18 Feb 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0216dz.r - expected 0x238045097, generated 0x20522c94 22:26:04 18 Feb 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0216dz.r - expected 0xe791055f, generated 0x3e9c 22:26:04 18 Feb 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0216dz.r - skipping 22:26:04 18 Feb 2017 UTC: ERROR: Base.py(272): Could not process sg0216dz - skipping 22:26:04 18 Feb 2017 UTC: WARNING: Base.py(1624): No dives to process 22:26:04 18 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [216] 22:26:04 18 Feb 2017 UTC: INFO: Base.py(1780): No dives found to profile 22:26:04 18 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.216 22:26:04 18 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:26:04 18 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:26:04 18 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:26:04 18 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:26:04 18 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:26:04 18 Feb 2017 UTC: ERROR: Base.py(1960): Dive [216] failed to process completely. The following files were not processed completely: /home/sg626/sg0216dz.r Glider logout not seen - retransmissions from glider possible Consult baselog_170218122557 for details. 22:26:04 18 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:26:04 18 Feb 2017 UTC /home/sg626/p6260216.log 22:26:04 18 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:26:04 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:26:04 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:26:04 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:26:04 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:26:04 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:26:04 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:26:04 18 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:26:04 18 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:26:04 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:26:04 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:26:04 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:26:04 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:26:04 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:26:04 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:26:04 18 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:26:04 18 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:26:04 18 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:26:04 18 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:26:04 18 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:26:04 18 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:26:04 18 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:26:04 18 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:26:04 18 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 22:26:04 18 Feb 2017 UTC 22:28:16 18 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 2183 22:28:16 18 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:30:03 18 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 2396 22:30:03 18 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:30:03 18 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:30:03 18 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:30:03 18 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:30:03 18 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170218123002 ] 22:30:03 18 Feb 2017 UTC: INFO: Base.py(1333): PID:2403 22:30:03 18 Feb 2017 UTC: INFO: Base.py(1375): Started processing 22:30:03 18 Feb 2017 UTC 22:30:03 18 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:30:04 18 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:30:04 18 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:30:04 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:30:04 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:216 calls_made:2 call_cycle:0 22:30:04 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:30:04 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:216 calls_made:2 call_cycle:0 22:30:04 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:30:04 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:216 calls_made:2 call_cycle:0 22:30:04 18 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:216 calls_made:2 call_cycle:0 2330.0580 -15639.0360 02/18/17 22:21:54 UTC) to sdrifter@soest.hawaii.edu 22:30:04 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:216 calls_made:2 call_cycle:0 22:30:04 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:30:04 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:216 calls_made:2 call_cycle:0 22:30:04 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:30:04 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:216 calls_made:2 call_cycle:0 22:30:04 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:30:04 18 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:216 calls_made:2 call_cycle:0 22:30:04 18 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:30:04 18 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:30:08 18 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:30:08 18 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:30:08 18 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:30:08 18 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:30:08 18 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:30:08 18 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:30:09 18 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 22:30:09 18 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0216dz 22:30:09 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0216dz.x00 22:30:09 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0216dz.x01 22:30:09 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0216dz.x02 22:30:09 18 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0216dz.x03 22:30:09 18 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0216dz.r in process_file_group 22:30:09 18 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [216] 22:30:09 18 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [216] 22:30:09 18 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260216) for profiles 22:30:09 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 22:30:09 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/563) 562 563 to QC_BAD because CT out of water 22:30:09 18 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.040m) 22:30:09 18 Feb 2017 UTC: INFO: QC.py(365): Changed (2/563) 2 562 to QC_PROBABLY_BAD because raw temperature spikes 22:30:09 18 Feb 2017 UTC: INFO: QC.py(377): Changed (1/563) 562 to QC_BAD because raw salinity below bound 22:30:10 18 Feb 2017 UTC: INFO: QC.py(408): Changed (2/563) 186 187 to QC_PROBABLY_BAD because raw conductivity spikes 22:30:10 18 Feb 2017 UTC: INFO: QC.py(180): Changed (1/563) 2 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 22:30:10 18 Feb 2017 UTC: INFO: QC.py(180): Changed (2/563) 186 187 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 22:30:10 18 Feb 2017 UTC: INFO: QC.py(180): Changed (1/563) 563 to QC_BAD because changed raw cond implies changed raw salinity 22:30:10 18 Feb 2017 UTC: INFO: QC.py(365): Changed (2/563) 2 562 to QC_INTERPOLATED because temperature spikes 22:30:10 18 Feb 2017 UTC: INFO: QC.py(377): Changed (1/563) 562 to QC_BAD because salinity below bound 22:30:10 18 Feb 2017 UTC: INFO: QC.py(408): Changed (2/563) 186 187 to QC_INTERPOLATED because conductivity spikes 22:30:10 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/563) 229:234 to QC_BAD because slow apogee CT flow 22:30:10 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/563) 1:6 to QC_BAD because prior to dive start 22:30:10 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/563) 1:6 229:234 562 563 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:30:10 18 Feb 2017 UTC: INFO: QC.py(180): Changed (14/563) 1:6 229:234 562 563 to QC_BAD because changed corrected salin implies changed speed 22:30:10 18 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:30:10 18 Feb 2017 UTC: INFO: QC.py(180): Changed (2/563) 186 187 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 22:30:10 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.83 cm/s 22:30:10 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.86 cm/s 22:30:10 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:30:10 18 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/563) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:30:10 18 Feb 2017 UTC: INFO: QC.py(180): Changed (2/563) 2 562 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 22:30:10 18 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/563) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 22:30:10 18 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/563) 561 to QC_BAD because bad aa4330 oyxgen 22:30:10 18 Feb 2017 UTC: INFO: QC.py(180): Changed (2/563) 2 562 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 22:30:10 18 Feb 2017 UTC: INFO: QC.py(180): Changed (14/563) 1:6 229:234 562 563 to QC_BAD because changed salinity implies changed optode oxygen 22:30:10 18 Feb 2017 UTC: INFO: QC.py(180): Changed (1/563) 186 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 22:30:10 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:30:10 18 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 22:30:10 18 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 22:30:11 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 216: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.49% reduction 22:30:11 18 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.216 22:30:11 18 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:30:11 18 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:30:11 18 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:30:11 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 22:30:11 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 22:31:49 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 22:31:50 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 22:31:50 18 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 22:32:08 18 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:32:08 18 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:32:08 18 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:32:08 18 Feb 2017 UTC /home/sg626/p6260216.eng /home/sg626/p6260216.asc /home/sg626/p6260216.pro /home/sg626/p6260216.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 22:32:08 18 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:32:08 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:32:08 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:32:08 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:32:08 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:32:08 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:32:08 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:32:08 18 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:32:08 18 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:32:08 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:32:08 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:32:08 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:32:08 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:32:08 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:32:08 18 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:32:08 18 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:32:08 18 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:32:08 18 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:32:08 18 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:32:08 18 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:32:08 18 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:32:08 18 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:32:08 18 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:32:08 18 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 22:32:08 18 Feb 2017 UTC 01:34:04 19 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 10547 01:34:04 19 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:36:48 19 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 10714 01:36:48 19 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:36:48 19 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:36:48 19 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:36:48 19 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:36:48 19 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170218153648 ] 01:36:48 19 Feb 2017 UTC: INFO: Base.py(1333): PID:10721 01:36:49 19 Feb 2017 UTC: INFO: Base.py(1375): Started processing 01:36:49 19 Feb 2017 UTC 01:36:49 19 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:36:49 19 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:36:49 19 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:36:49 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:36:49 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:217 calls_made:1 call_cycle:0 01:36:49 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:36:49 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:217 calls_made:1 call_cycle:0 01:36:49 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:36:49 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:217 calls_made:1 call_cycle:0 01:36:49 19 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:217 calls_made:1 call_cycle:0 2330.5620 -15637.3780 02/19/17 01:32:01 UTC) to sdrifter@soest.hawaii.edu 01:36:49 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:217 calls_made:1 call_cycle:0 01:36:49 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:36:49 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:217 calls_made:1 call_cycle:0 01:36:49 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:36:49 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:217 calls_made:1 call_cycle:0 01:36:49 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:36:49 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:217 calls_made:1 call_cycle:0 01:36:49 19 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:36:49 19 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:36:53 19 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:36:54 19 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:36:54 19 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:36:54 19 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:36:54 19 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:36:54 19 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:36:54 19 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0217lz 01:36:54 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0217lz.x00 01:36:54 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0217lz.x01 01:36:54 19 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0217lz.r in process_file_group 01:36:54 19 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260217.log 01:36:54 19 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:36:54 19 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0217dz 01:36:54 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0217dz.x00 01:36:54 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0217dz.x01 01:36:54 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0217dz.x02 01:36:54 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0217dz.x03 01:36:54 19 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0217dz.r in process_file_group 01:36:55 19 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [217] 01:36:55 19 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [217] 01:36:55 19 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260217) for profiles 01:36:55 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:36:55 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/552) 551 552 to QC_BAD because CT out of water 01:36:55 19 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.125m) 01:36:55 19 Feb 2017 UTC: INFO: QC.py(365): Changed (3/552) 2 4 5 to QC_PROBABLY_BAD because raw temperature spikes 01:36:55 19 Feb 2017 UTC: INFO: QC.py(377): Changed (1/552) 552 to QC_BAD because raw salinity below bound 01:36:55 19 Feb 2017 UTC: INFO: QC.py(180): Changed (3/552) 2 4 5 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:36:55 19 Feb 2017 UTC: INFO: QC.py(180): Changed (1/552) 551 to QC_BAD because changed raw cond implies changed raw salinity 01:36:55 19 Feb 2017 UTC: INFO: QC.py(365): Changed (3/552) 2 4 5 to QC_INTERPOLATED because temperature spikes 01:36:55 19 Feb 2017 UTC: INFO: QC.py(377): Changed (1/552) 552 to QC_BAD because salinity below bound 01:36:55 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/552) 226:231 to QC_BAD because slow apogee CT flow 01:36:55 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/552) 1:6 to QC_BAD because prior to dive start 01:36:55 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/552) 1:6 226:231 551 552 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:36:55 19 Feb 2017 UTC: INFO: QC.py(180): Changed (14/552) 1:6 226:231 551 552 to QC_BAD because changed corrected salin implies changed speed 01:36:56 19 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:36:56 19 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 217 interp_salinity data_points in_between 280 331 % suspect thermal-inertia points 324 01:36:56 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.39 cm/s 01:36:56 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.93 cm/s 01:36:56 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:36:56 19 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/552) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:36:56 19 Feb 2017 UTC: INFO: QC.py(180): Changed (3/552) 2 4 5 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 01:36:56 19 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/552) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 01:36:56 19 Feb 2017 UTC: INFO: QC.py(180): Changed (3/552) 2 4 5 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 01:36:56 19 Feb 2017 UTC: INFO: QC.py(180): Changed (14/552) 1:6 226:231 551 552 to QC_BAD because changed salinity implies changed optode oxygen 01:36:56 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:36:56 19 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:36:56 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:36:56 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 217: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.54% reduction 01:36:56 19 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.217 01:36:56 19 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:36:56 19 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:36:56 19 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:36:56 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:36:56 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 01:38:36 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 01:38:37 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 01:38:37 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 01:38:55 19 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:38:55 19 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:38:55 19 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:38:55 19 Feb 2017 UTC /home/sg626/p6260217.log /home/sg626/p6260217.eng /home/sg626/p6260217.asc /home/sg626/p6260217.pro /home/sg626/p6260217.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 01:38:55 19 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:38:55 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:38:55 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:38:55 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:38:55 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:38:55 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:38:55 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:38:55 19 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:38:55 19 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:38:55 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:38:55 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:38:55 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:38:55 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:38:55 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:38:55 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:38:55 19 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:38:55 19 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:38:55 19 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:38:55 19 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:38:55 19 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:38:55 19 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:38:55 19 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:38:55 19 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:38:55 19 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 01:38:55 19 Feb 2017 UTC 04:41:01 19 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 19072 04:41:01 19 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:43:48 19 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 19241 04:43:48 19 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:43:48 19 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:43:48 19 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:43:48 19 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:43:48 19 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170218184347 ] 04:43:48 19 Feb 2017 UTC: INFO: Base.py(1333): PID:19248 04:43:48 19 Feb 2017 UTC: INFO: Base.py(1375): Started processing 04:43:48 19 Feb 2017 UTC 04:43:48 19 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:43:48 19 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:43:48 19 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:43:48 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:43:48 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:218 calls_made:1 call_cycle:0 04:43:48 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:43:48 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:218 calls_made:1 call_cycle:0 04:43:48 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:43:48 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:218 calls_made:1 call_cycle:0 04:43:48 19 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:218 calls_made:1 call_cycle:0 2331.0110 -15635.8090 02/19/17 04:38:56 UTC) to sdrifter@soest.hawaii.edu 04:43:48 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:218 calls_made:1 call_cycle:0 04:43:48 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:43:48 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:218 calls_made:1 call_cycle:0 04:43:48 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:43:48 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:218 calls_made:1 call_cycle:0 04:43:48 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:43:48 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:218 calls_made:1 call_cycle:0 04:43:48 19 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:43:48 19 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:43:52 19 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:43:53 19 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:43:53 19 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:43:53 19 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:43:53 19 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:43:53 19 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:43:54 19 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0218lz 04:43:54 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0218lz.x00 04:43:54 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0218lz.x01 04:43:54 19 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0218lz.r in process_file_group 04:43:54 19 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260218.log 04:43:54 19 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:43:54 19 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0218dz 04:43:54 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0218dz.x00 04:43:54 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0218dz.x01 04:43:54 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0218dz.x02 04:43:54 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0218dz.x03 04:43:54 19 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0218dz.r in process_file_group 04:43:54 19 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [218] 04:43:54 19 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [218] 04:43:54 19 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260218) for profiles 04:43:54 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 04:43:54 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/555) 553 554 to QC_BAD because CT out of water 04:43:54 19 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.231m) 04:43:54 19 Feb 2017 UTC: INFO: QC.py(365): Changed (5/555) 3 231 261 262 554 to QC_PROBABLY_BAD because raw temperature spikes 04:43:54 19 Feb 2017 UTC: INFO: QC.py(377): Changed (1/555) 554 to QC_BAD because raw salinity below bound 04:43:54 19 Feb 2017 UTC: INFO: QC.py(408): Changed (2/555) 261 262 to QC_PROBABLY_BAD because raw conductivity spikes 04:43:54 19 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(963): Restarting anomaly after 23.65m: -0.2572 at 242.90m (130) 04:43:54 19 Feb 2017 UTC: INFO: QC.py(180): Changed (4/555) 3 231 261 262 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:43:54 19 Feb 2017 UTC: INFO: QC.py(180): Changed (1/555) 553 to QC_BAD because changed raw cond implies changed raw salinity 04:43:54 19 Feb 2017 UTC: INFO: QC.py(365): Changed (5/555) 3 231 261 262 554 to QC_INTERPOLATED because temperature spikes 04:43:54 19 Feb 2017 UTC: INFO: QC.py(377): Changed (1/555) 554 to QC_BAD because salinity below bound 04:43:54 19 Feb 2017 UTC: INFO: QC.py(408): Changed (2/555) 261 262 to QC_INTERPOLATED because conductivity spikes 04:43:54 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/555) 229:234 to QC_BAD because slow apogee CT flow 04:43:54 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/555) 1:6 to QC_BAD because prior to dive start 04:43:54 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/555) 555 to QC_BAD because end of climb 04:43:54 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/555) 1:6 229:234 553:555 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:43:54 19 Feb 2017 UTC: INFO: QC.py(180): Changed (15/555) 1:6 229:234 553:555 to QC_BAD because changed corrected salin implies changed speed 04:43:55 19 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:43:55 19 Feb 2017 UTC: INFO: QC.py(180): Changed (2/555) 261 262 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 04:43:55 19 Feb 2017 UTC: INFO: QC.py(180): Changed (2/555) 261 262 to QC_INTERPOLATED because changed corrected temp implies changed speed 04:43:55 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.97 cm/s 04:43:55 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.00 cm/s 04:43:55 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:43:55 19 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/555) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:43:55 19 Feb 2017 UTC: INFO: QC.py(180): Changed (4/555) 3 231 261 554 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:43:55 19 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/555) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 04:43:55 19 Feb 2017 UTC: INFO: QC.py(180): Changed (4/555) 3 231 261 554 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:43:55 19 Feb 2017 UTC: INFO: QC.py(180): Changed (15/555) 1:6 229:234 553:555 to QC_BAD because changed salinity implies changed optode oxygen 04:43:55 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:43:55 19 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:43:55 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 04:43:55 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 218: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.70% reduction 04:43:55 19 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.218 04:43:55 19 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:43:55 19 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:43:55 19 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:43:55 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 04:43:55 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 04:45:36 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 04:45:37 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 04:45:37 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 04:45:55 19 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:45:55 19 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:45:55 19 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:45:55 19 Feb 2017 UTC /home/sg626/p6260218.log /home/sg626/p6260218.eng /home/sg626/p6260218.asc /home/sg626/p6260218.pro /home/sg626/p6260218.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 04:45:55 19 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:45:55 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:45:55 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:45:55 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:45:55 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:45:55 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:45:55 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:45:55 19 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:45:55 19 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:45:55 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:45:55 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:45:55 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:45:55 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:45:55 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:45:55 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:45:55 19 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:45:55 19 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:45:55 19 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:45:55 19 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:45:55 19 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:45:55 19 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:45:55 19 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:45:55 19 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:45:55 19 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 04:45:55 19 Feb 2017 UTC 07:50:51 19 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 27640 07:50:51 19 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:53:36 19 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 27810 07:53:36 19 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:53:36 19 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:53:36 19 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:53:36 19 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:53:36 19 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170218215336 ] 07:53:36 19 Feb 2017 UTC: INFO: Base.py(1333): PID:27818 07:53:36 19 Feb 2017 UTC: INFO: Base.py(1375): Started processing 07:53:36 19 Feb 2017 UTC 07:53:36 19 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:53:37 19 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:53:37 19 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:53:37 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:53:37 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:219 calls_made:1 call_cycle:0 07:53:37 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:53:37 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:219 calls_made:1 call_cycle:0 07:53:37 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:53:37 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:219 calls_made:1 call_cycle:0 07:53:37 19 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:219 calls_made:1 call_cycle:0 2331.4190 -15633.9790 02/19/17 07:48:48 UTC) to sdrifter@soest.hawaii.edu 07:53:37 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:219 calls_made:1 call_cycle:0 07:53:37 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:53:37 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:219 calls_made:1 call_cycle:0 07:53:37 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:53:37 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:219 calls_made:1 call_cycle:0 07:53:37 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:53:37 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:219 calls_made:1 call_cycle:0 07:53:37 19 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:53:37 19 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:53:41 19 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:53:42 19 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:53:42 19 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:53:42 19 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:53:42 19 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:53:42 19 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:53:42 19 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0219lz 07:53:42 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0219lz.x00 07:53:42 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0219lz.x01 07:53:42 19 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0219lz.r in process_file_group 07:53:42 19 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260219.log 07:53:42 19 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:53:42 19 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0219dz 07:53:42 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0219dz.x00 07:53:42 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0219dz.x01 07:53:42 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0219dz.x02 07:53:42 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0219dz.x03 07:53:42 19 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0219dz.r in process_file_group 07:53:43 19 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [219] 07:53:43 19 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [219] 07:53:43 19 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260219) for profiles 07:53:43 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 07:53:43 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/590) 590 to QC_BAD because CT out of water 07:53:43 19 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.099m) 07:53:43 19 Feb 2017 UTC: INFO: QC.py(365): Changed (5/590) 2 181 227 256 257 to QC_PROBABLY_BAD because raw temperature spikes 07:53:43 19 Feb 2017 UTC: INFO: QC.py(377): Changed (1/590) 590 to QC_BAD because raw salinity below bound 07:53:43 19 Feb 2017 UTC: INFO: QC.py(408): Changed (2/590) 181 256 to QC_PROBABLY_BAD because raw conductivity spikes 07:53:43 19 Feb 2017 UTC: INFO: QC.py(180): Changed (5/590) 2 181 227 256 257 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:53:43 19 Feb 2017 UTC: INFO: QC.py(365): Changed (5/590) 2 181 227 256 257 to QC_INTERPOLATED because temperature spikes 07:53:43 19 Feb 2017 UTC: INFO: QC.py(377): Changed (1/590) 590 to QC_BAD because salinity below bound 07:53:43 19 Feb 2017 UTC: INFO: QC.py(408): Changed (2/590) 181 256 to QC_INTERPOLATED because conductivity spikes 07:53:43 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/590) 225:229 to QC_BAD because slow apogee CT flow 07:53:43 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/590) 1:6 to QC_BAD because prior to dive start 07:53:43 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/590) 589 to QC_BAD because end of climb 07:53:43 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/590) 1:6 225:229 589 590 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:53:43 19 Feb 2017 UTC: INFO: QC.py(180): Changed (13/590) 1:6 225:229 589 590 to QC_BAD because changed corrected salin implies changed speed 07:53:44 19 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:53:44 19 Feb 2017 UTC: INFO: QC.py(180): Changed (3/590) 181 256 257 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 07:53:44 19 Feb 2017 UTC: INFO: QC.py(180): Changed (3/590) 181 256 257 to QC_INTERPOLATED because changed corrected temp implies changed speed 07:53:44 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.50 cm/s 07:53:44 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.03 cm/s 07:53:44 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:53:44 19 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (158/590) 128:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:53:44 19 Feb 2017 UTC: INFO: QC.py(180): Changed (3/590) 2 181 256 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:53:44 19 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (158/590) 128:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 07:53:44 19 Feb 2017 UTC: INFO: QC.py(180): Changed (3/590) 2 181 256 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:53:44 19 Feb 2017 UTC: INFO: QC.py(180): Changed (13/590) 1:6 225:229 589 590 to QC_BAD because changed salinity implies changed optode oxygen 07:53:44 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:53:44 19 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:53:44 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 07:53:44 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 219: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.20% reduction 07:53:44 19 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.219 07:53:44 19 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:53:44 19 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:53:44 19 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:53:44 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 07:53:44 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:55:26 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 07:55:26 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:55:26 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:55:45 19 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:55:45 19 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:55:45 19 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:55:45 19 Feb 2017 UTC /home/sg626/p6260219.log /home/sg626/p6260219.eng /home/sg626/p6260219.asc /home/sg626/p6260219.pro /home/sg626/p6260219.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:55:45 19 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:55:45 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:55:45 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:55:45 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:55:45 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:55:45 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:55:45 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:55:45 19 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:55:45 19 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:55:45 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:55:45 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:55:45 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:55:45 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:55:45 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:55:45 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:55:45 19 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:55:45 19 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:55:45 19 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:55:45 19 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:55:45 19 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:55:45 19 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:55:45 19 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:55:45 19 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:55:45 19 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 07:55:45 19 Feb 2017 UTC 10:57:51 19 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 3967 10:57:51 19 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 11:00:45 19 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 4301 11:00:45 19 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:00:45 19 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 11:00:45 19 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 11:00:45 19 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:00:45 19 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170219010044 ] 11:00:45 19 Feb 2017 UTC: INFO: Base.py(1333): PID:4311 11:00:45 19 Feb 2017 UTC: INFO: Base.py(1375): Started processing 11:00:45 19 Feb 2017 UTC 11:00:45 19 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 11:00:45 19 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 11:00:45 19 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:00:45 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:00:45 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:220 calls_made:1 call_cycle:0 11:00:45 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:00:45 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:220 calls_made:1 call_cycle:0 11:00:45 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:00:45 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:220 calls_made:1 call_cycle:0 11:00:45 19 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:220 calls_made:1 call_cycle:0 2331.8750 -15632.2850 02/19/17 10:55:46 UTC) to sdrifter@soest.hawaii.edu 11:00:45 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:220 calls_made:1 call_cycle:0 11:00:45 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:00:45 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:220 calls_made:1 call_cycle:0 11:00:45 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:00:45 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:220 calls_made:1 call_cycle:0 11:00:45 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:00:45 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:220 calls_made:1 call_cycle:0 11:00:45 19 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:00:45 19 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:00:49 19 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:00:50 19 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:00:50 19 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 11:00:50 19 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:00:50 19 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:00:50 19 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 11:00:51 19 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0220lz 11:00:51 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0220lz.x00 11:00:51 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0220lz.x01 11:00:51 19 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0220lz.r in process_file_group 11:00:51 19 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260220.log 11:00:51 19 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 11:00:51 19 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0220dz 11:00:51 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0220dz.x00 11:00:51 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0220dz.x01 11:00:51 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0220dz.x02 11:00:51 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0220dz.x03 11:00:51 19 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0220dz.r in process_file_group 11:00:51 19 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [220] 11:00:51 19 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [220] 11:00:51 19 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260220) for profiles 11:00:51 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 11:00:51 19 Feb 2017 UTC: INFO: QC.py(365): Changed (6/548) 4 194 195 249 250 266 to QC_PROBABLY_BAD because raw temperature spikes 11:00:51 19 Feb 2017 UTC: INFO: QC.py(377): Changed (1/548) 548 to QC_BAD because raw salinity below bound 11:00:51 19 Feb 2017 UTC: INFO: QC.py(388): Changed (1/548) 548 to QC_BAD because bad raw salinity indicates raw conductivity issues 11:00:51 19 Feb 2017 UTC: INFO: QC.py(408): Changed (3/548) 249 250 266 to QC_PROBABLY_BAD because raw conductivity spikes 11:00:51 19 Feb 2017 UTC: INFO: QC.py(180): Changed (6/548) 4 194 195 249 250 266 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 11:00:51 19 Feb 2017 UTC: INFO: QC.py(365): Changed (6/548) 4 194 195 249 250 266 to QC_INTERPOLATED because temperature spikes 11:00:51 19 Feb 2017 UTC: INFO: QC.py(377): Changed (1/548) 548 to QC_BAD because salinity below bound 11:00:51 19 Feb 2017 UTC: INFO: QC.py(388): Changed (1/548) 548 to QC_BAD because bad salinity indicates conductivity issues 11:00:51 19 Feb 2017 UTC: INFO: QC.py(408): Changed (3/548) 249 250 266 to QC_INTERPOLATED because conductivity spikes 11:00:51 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/548) 233:238 to QC_BAD because slow apogee CT flow 11:00:51 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/548) 1:6 to QC_BAD because prior to dive start 11:00:51 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/548) 1:6 233:238 548 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 11:00:51 19 Feb 2017 UTC: INFO: QC.py(180): Changed (13/548) 1:6 233:238 548 to QC_BAD because changed corrected salin implies changed speed 11:00:52 19 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 11:00:52 19 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 220 interp_salinity data_points in_between 308 328 % suspect thermal-inertia points 324 325 11:00:52 19 Feb 2017 UTC: INFO: QC.py(180): Changed (5/548) 194 195 249 250 266 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 11:00:52 19 Feb 2017 UTC: INFO: QC.py(180): Changed (5/548) 194 195 249 250 266 to QC_INTERPOLATED because changed corrected temp implies changed speed 11:00:52 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.37 cm/s 11:00:52 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.14 cm/s 11:00:52 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 11:00:52 19 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/548) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 11:00:52 19 Feb 2017 UTC: INFO: QC.py(180): Changed (2/548) 4 266 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 11:00:52 19 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/548) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 11:00:52 19 Feb 2017 UTC: INFO: QC.py(180): Changed (2/548) 4 266 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 11:00:52 19 Feb 2017 UTC: INFO: QC.py(180): Changed (13/548) 1:6 233:238 548 to QC_BAD because changed salinity implies changed optode oxygen 11:00:52 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 11:00:52 19 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 11:00:52 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 11:00:52 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 220: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.37% reduction 11:00:52 19 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.220 11:00:52 19 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:00:52 19 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:00:52 19 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:00:53 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 11:00:53 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 11:02:33 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 11:02:33 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 11:02:33 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 11:02:52 19 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:02:52 19 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:02:52 19 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:02:52 19 Feb 2017 UTC /home/sg626/p6260220.log /home/sg626/p6260220.eng /home/sg626/p6260220.asc /home/sg626/p6260220.pro /home/sg626/p6260220.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 11:02:52 19 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:02:52 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:02:52 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:02:52 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:02:52 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:02:52 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:02:52 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:02:52 19 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:02:52 19 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:02:52 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:02:52 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:02:52 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:02:52 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:02:52 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:02:52 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:02:52 19 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:02:52 19 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 11:02:52 19 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 11:02:52 19 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 11:02:52 19 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 11:02:52 19 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:02:52 19 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:02:52 19 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:02:52 19 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 11:02:52 19 Feb 2017 UTC 14:09:20 19 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 10804 14:09:20 19 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:12:05 19 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 11082 14:12:05 19 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:12:05 19 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 14:12:05 19 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 14:12:05 19 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:12:05 19 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170219041204 ] 14:12:05 19 Feb 2017 UTC: INFO: Base.py(1333): PID:11090 14:12:05 19 Feb 2017 UTC: INFO: Base.py(1375): Started processing 14:12:05 19 Feb 2017 UTC 14:12:05 19 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 14:12:06 19 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 14:12:06 19 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:12:06 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:12:06 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:221 calls_made:1 call_cycle:0 14:12:06 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:12:06 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:221 calls_made:1 call_cycle:0 14:12:06 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:12:06 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:221 calls_made:1 call_cycle:0 14:12:06 19 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:221 calls_made:1 call_cycle:0 2332.1390 -15631.1060 02/19/17 14:07:18 UTC) to sdrifter@soest.hawaii.edu 14:12:06 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:221 calls_made:1 call_cycle:0 14:12:06 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:12:06 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:221 calls_made:1 call_cycle:0 14:12:06 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:12:06 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:221 calls_made:1 call_cycle:0 14:12:06 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:12:06 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:221 calls_made:1 call_cycle:0 14:12:06 19 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:12:06 19 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:12:10 19 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:12:10 19 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:12:10 19 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 14:12:10 19 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:12:10 19 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:12:10 19 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 14:12:11 19 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0221lz 14:12:11 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0221lz.x00 14:12:11 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0221lz.x01 14:12:11 19 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0221lz.r in process_file_group 14:12:11 19 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260221.log 14:12:11 19 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 14:12:11 19 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0221dz 14:12:11 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0221dz.x00 14:12:11 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0221dz.x01 14:12:11 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0221dz.x02 14:12:11 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0221dz.x03 14:12:11 19 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0221dz.r in process_file_group 14:12:12 19 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [221] 14:12:12 19 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [221] 14:12:12 19 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260221) for profiles 14:12:12 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 14:12:12 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/573) 572 573 to QC_BAD because CT out of water 14:12:12 19 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.047m) 14:12:12 19 Feb 2017 UTC: INFO: QC.py(365): Changed (1/573) 2 to QC_PROBABLY_BAD because raw temperature spikes 14:12:12 19 Feb 2017 UTC: INFO: QC.py(180): Changed (1/573) 2 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:12:12 19 Feb 2017 UTC: INFO: QC.py(180): Changed (2/573) 572 573 to QC_BAD because changed raw cond implies changed raw salinity 14:12:12 19 Feb 2017 UTC: INFO: QC.py(365): Changed (1/573) 2 to QC_INTERPOLATED because temperature spikes 14:12:12 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/573) 235:240 to QC_BAD because slow apogee CT flow 14:12:12 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/573) 1:6 to QC_BAD because prior to dive start 14:12:12 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/573) 1:6 235:240 572 573 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:12:12 19 Feb 2017 UTC: INFO: QC.py(180): Changed (14/573) 1:6 235:240 572 573 to QC_BAD because changed corrected salin implies changed speed 14:12:12 19 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:12:13 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.48 cm/s 14:12:13 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.09 cm/s 14:12:13 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:12:13 19 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (164/573) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:12:13 19 Feb 2017 UTC: INFO: QC.py(180): Changed (1/573) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 14:12:13 19 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (164/573) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 14:12:13 19 Feb 2017 UTC: INFO: QC.py(180): Changed (1/573) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 14:12:13 19 Feb 2017 UTC: INFO: QC.py(180): Changed (14/573) 1:6 235:240 572 573 to QC_BAD because changed salinity implies changed optode oxygen 14:12:13 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:12:13 19 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:12:13 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 14:12:13 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 221: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.44% reduction 14:12:13 19 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.221 14:12:13 19 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:12:13 19 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:12:13 19 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:12:13 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 14:12:13 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 14:13:56 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 14:13:57 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 14:13:57 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 14:14:15 19 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:14:15 19 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:14:15 19 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:14:15 19 Feb 2017 UTC /home/sg626/p6260221.log /home/sg626/p6260221.eng /home/sg626/p6260221.asc /home/sg626/p6260221.pro /home/sg626/p6260221.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 14:14:15 19 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:14:15 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:14:15 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:14:15 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:14:15 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:14:15 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:14:15 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:14:15 19 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:14:15 19 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:14:15 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:14:15 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:14:15 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:14:15 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:14:15 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:14:15 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:14:15 19 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:14:15 19 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:14:15 19 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:14:15 19 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:14:15 19 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:14:15 19 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:14:15 19 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:14:15 19 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:14:15 19 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 14:14:15 19 Feb 2017 UTC 17:13:32 19 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 16077 17:13:32 19 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:16:11 19 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 16199 17:16:11 19 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:16:11 19 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:16:11 19 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:16:11 19 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:16:11 19 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170219071610 ] 17:16:11 19 Feb 2017 UTC: INFO: Base.py(1333): PID:16207 17:16:11 19 Feb 2017 UTC: INFO: Base.py(1375): Started processing 17:16:11 19 Feb 2017 UTC 17:16:11 19 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:16:12 19 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:16:12 19 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:16:12 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:16:12 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:222 calls_made:1 call_cycle:0 17:16:12 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:16:12 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:222 calls_made:1 call_cycle:0 17:16:12 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:16:12 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:222 calls_made:1 call_cycle:0 17:16:12 19 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:222 calls_made:1 call_cycle:0 2332.5340 -15630.6030 02/19/17 17:11:01 UTC) to sdrifter@soest.hawaii.edu 17:16:12 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:222 calls_made:1 call_cycle:0 17:16:12 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:16:12 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:222 calls_made:1 call_cycle:0 17:16:12 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:16:12 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:222 calls_made:1 call_cycle:0 17:16:12 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:16:12 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:222 calls_made:1 call_cycle:0 17:16:12 19 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:16:12 19 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:16:16 19 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:16:16 19 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:16:16 19 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:16:16 19 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:16:16 19 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:16:16 19 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:16:17 19 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0222lz 17:16:17 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0222lz.x00 17:16:17 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0222lz.x01 17:16:17 19 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0222lz.r in process_file_group 17:16:17 19 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260222.log 17:16:17 19 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:16:17 19 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0222dz 17:16:17 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0222dz.x00 17:16:17 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0222dz.x01 17:16:17 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0222dz.x02 17:16:17 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0222dz.x03 17:16:17 19 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0222dz.r in process_file_group 17:16:17 19 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [222] 17:16:17 19 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [222] 17:16:18 19 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260222) for profiles 17:16:18 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:16:18 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/529) 528 529 to QC_BAD because CT out of water 17:16:18 19 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.143m) 17:16:18 19 Feb 2017 UTC: INFO: QC.py(365): Changed (5/529) 201 202 253 254 528 to QC_PROBABLY_BAD because raw temperature spikes 17:16:18 19 Feb 2017 UTC: INFO: QC.py(377): Changed (1/529) 528 to QC_BAD because raw salinity below bound 17:16:18 19 Feb 2017 UTC: INFO: QC.py(408): Changed (4/529) 201 202 253 254 to QC_PROBABLY_BAD because raw conductivity spikes 17:16:18 19 Feb 2017 UTC: INFO: QC.py(180): Changed (4/529) 201 202 253 254 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:16:18 19 Feb 2017 UTC: INFO: QC.py(180): Changed (1/529) 529 to QC_BAD because changed raw cond implies changed raw salinity 17:16:18 19 Feb 2017 UTC: INFO: QC.py(365): Changed (5/529) 201 202 253 254 528 to QC_INTERPOLATED because temperature spikes 17:16:18 19 Feb 2017 UTC: INFO: QC.py(377): Changed (1/529) 528 to QC_BAD because salinity below bound 17:16:18 19 Feb 2017 UTC: INFO: QC.py(408): Changed (4/529) 201 202 253 254 to QC_INTERPOLATED because conductivity spikes 17:16:18 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/529) 228:232 to QC_BAD because slow apogee CT flow 17:16:18 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/529) 1:6 to QC_BAD because prior to dive start 17:16:18 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/529) 1:6 228:232 528 529 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:16:18 19 Feb 2017 UTC: INFO: QC.py(180): Changed (13/529) 1:6 228:232 528 529 to QC_BAD because changed corrected salin implies changed speed 17:16:18 19 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:16:18 19 Feb 2017 UTC: INFO: QC.py(180): Changed (4/529) 201 202 253 254 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 17:16:18 19 Feb 2017 UTC: INFO: QC.py(180): Changed (4/529) 201 202 253 254 to QC_INTERPOLATED because changed corrected temp implies changed speed 17:16:18 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.01 cm/s 17:16:18 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.20 cm/s 17:16:18 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:16:18 19 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (159/529) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:16:18 19 Feb 2017 UTC: INFO: QC.py(180): Changed (2/529) 201 528 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:16:18 19 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (159/529) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:16:18 19 Feb 2017 UTC: INFO: QC.py(180): Changed (2/529) 201 528 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:16:18 19 Feb 2017 UTC: INFO: QC.py(180): Changed (13/529) 1:6 228:232 528 529 to QC_BAD because changed salinity implies changed optode oxygen 17:16:18 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:16:18 19 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:16:18 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:16:19 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 222: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.46% reduction 17:16:19 19 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.222 17:16:19 19 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:16:19 19 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:16:19 19 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:16:19 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:16:19 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:18:00 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 17:18:01 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:18:01 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:18:19 19 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:18:19 19 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:18:19 19 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:18:19 19 Feb 2017 UTC /home/sg626/p6260222.log /home/sg626/p6260222.eng /home/sg626/p6260222.asc /home/sg626/p6260222.pro /home/sg626/p6260222.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:18:19 19 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:18:19 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:18:19 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:18:19 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:18:19 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:18:19 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:18:19 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:18:19 19 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:18:19 19 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:18:19 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:18:19 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:18:19 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:18:19 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:18:19 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:18:19 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:18:19 19 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:18:19 19 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:18:19 19 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:18:19 19 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:18:19 19 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:18:19 19 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:18:19 19 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:18:19 19 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:18:19 19 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 17:18:19 19 Feb 2017 UTC 20:23:14 19 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 21178 20:23:14 19 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:25:57 19 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 21293 20:25:57 19 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:25:57 19 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:25:57 19 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:25:57 19 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:25:57 19 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170219102557 ] 20:25:57 19 Feb 2017 UTC: INFO: Base.py(1333): PID:21300 20:25:57 19 Feb 2017 UTC: INFO: Base.py(1375): Started processing 20:25:57 19 Feb 2017 UTC 20:25:57 19 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:25:58 19 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:25:58 19 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:25:58 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:25:58 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:223 calls_made:1 call_cycle:0 20:25:58 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:25:58 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:223 calls_made:1 call_cycle:0 20:25:58 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:25:58 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:223 calls_made:1 call_cycle:0 20:25:58 19 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:223 calls_made:1 call_cycle:0 2333.1920 -15629.9670 02/19/17 20:21:13 UTC) to sdrifter@soest.hawaii.edu 20:25:58 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:223 calls_made:1 call_cycle:0 20:25:58 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:25:58 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:223 calls_made:1 call_cycle:0 20:25:58 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:25:58 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:223 calls_made:1 call_cycle:0 20:25:58 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:25:58 19 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:223 calls_made:1 call_cycle:0 20:25:58 19 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:25:58 19 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:26:02 19 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:26:03 19 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:26:03 19 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:26:03 19 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:26:03 19 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:26:03 19 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:26:04 19 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0223lz 20:26:04 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0223lz.x00 20:26:04 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0223lz.x01 20:26:04 19 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0223lz.r in process_file_group 20:26:04 19 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260223.log 20:26:04 19 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:26:04 19 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0223dz 20:26:04 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0223dz.x00 20:26:04 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0223dz.x01 20:26:04 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0223dz.x02 20:26:04 19 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0223dz.x03 20:26:04 19 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0223dz.r in process_file_group 20:26:04 19 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [223] 20:26:04 19 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [223] 20:26:04 19 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260223) for profiles 20:26:04 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 20:26:04 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/576) 575 to QC_BAD because CT out of water 20:26:04 19 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.082m) 20:26:04 19 Feb 2017 UTC: INFO: QC.py(365): Changed (4/576) 2 3 5 575 to QC_PROBABLY_BAD because raw temperature spikes 20:26:04 19 Feb 2017 UTC: INFO: QC.py(377): Changed (1/576) 575 to QC_BAD because raw salinity below bound 20:26:04 19 Feb 2017 UTC: INFO: QC.py(180): Changed (3/576) 2 3 5 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 20:26:04 19 Feb 2017 UTC: INFO: QC.py(365): Changed (4/576) 2 3 5 575 to QC_INTERPOLATED because temperature spikes 20:26:04 19 Feb 2017 UTC: INFO: QC.py(377): Changed (1/576) 575 to QC_BAD because salinity below bound 20:26:04 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/576) 237:242 to QC_BAD because slow apogee CT flow 20:26:04 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/576) 1:6 to QC_BAD because prior to dive start 20:26:04 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (3/576) 573 574 576 to QC_BAD because end of climb 20:26:04 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/576) 1:6 237:242 573:576 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 20:26:04 19 Feb 2017 UTC: INFO: QC.py(180): Changed (16/576) 1:6 237:242 573:576 to QC_BAD because changed corrected salin implies changed speed 20:26:05 19 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 20:26:05 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.17 cm/s 20:26:05 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.00 cm/s 20:26:05 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 20:26:05 19 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/576) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 20:26:05 19 Feb 2017 UTC: INFO: QC.py(180): Changed (4/576) 2 3 5 575 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 20:26:05 19 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/576) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 20:26:05 19 Feb 2017 UTC: INFO: QC.py(180): Changed (4/576) 2 3 5 575 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 20:26:05 19 Feb 2017 UTC: INFO: QC.py(180): Changed (16/576) 1:6 237:242 573:576 to QC_BAD because changed salinity implies changed optode oxygen 20:26:05 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 20:26:05 19 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 20:26:05 19 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 20:26:05 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 223: Data set size for profile, binned and kkyy files reduced by 16 points, a 2.78% reduction 20:26:05 19 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.223 20:26:05 19 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:26:05 19 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:26:05 19 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:26:05 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 20:26:05 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 20:27:47 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 20:27:48 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 20:27:48 19 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 20:28:07 19 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:28:07 19 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:28:07 19 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:28:07 19 Feb 2017 UTC /home/sg626/p6260223.log /home/sg626/p6260223.eng /home/sg626/p6260223.asc /home/sg626/p6260223.pro /home/sg626/p6260223.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 20:28:07 19 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:28:07 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:28:07 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:28:07 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:28:07 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:28:07 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:28:07 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:28:07 19 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:28:07 19 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:28:07 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:28:07 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:28:07 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:28:07 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:28:07 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:28:07 19 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:28:07 19 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:28:07 19 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:28:07 19 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:28:07 19 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:28:07 19 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:28:07 19 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:28:07 19 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:28:07 19 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:28:07 19 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 20:28:07 19 Feb 2017 UTC 00:18:23 20 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 27699 00:18:23 20 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:21:39 20 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 28034 00:21:39 20 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:21:39 20 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:21:39 20 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:21:39 20 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:21:39 20 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170219142138 ] 00:21:39 20 Feb 2017 UTC: INFO: Base.py(1333): PID:28043 00:21:39 20 Feb 2017 UTC: INFO: Base.py(1375): Started processing 00:21:39 20 Feb 2017 UTC 00:21:39 20 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:21:39 20 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:21:39 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:21:39 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:21:39 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:224 calls_made:1 call_cycle:0 00:21:39 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:21:39 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:224 calls_made:1 call_cycle:0 00:21:39 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:21:39 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:224 calls_made:1 call_cycle:0 00:21:39 20 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:224 calls_made:1 call_cycle:0 2333.1900 -15630.2400 02/20/17 00:16:00 UTC) to sdrifter@soest.hawaii.edu 00:21:40 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:224 calls_made:1 call_cycle:0 00:21:40 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:21:40 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:224 calls_made:1 call_cycle:0 00:21:40 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:21:40 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:224 calls_made:1 call_cycle:0 00:21:40 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:21:40 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:224 calls_made:1 call_cycle:0 00:21:40 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:21:40 20 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:21:43 20 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:21:44 20 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:21:44 20 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:21:44 20 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:21:44 20 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:21:44 20 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:21:45 20 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0224lz 00:21:45 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0224lz.x00 00:21:45 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0224lz.x01 00:21:45 20 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0224lz.r in process_file_group 00:21:45 20 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260224.log 00:21:45 20 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:21:45 20 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0224dz 00:21:45 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0224dz.x00 00:21:45 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0224dz.x01 00:21:45 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0224dz.x02 00:21:45 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0224dz.x03 00:21:45 20 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0224dz.r in process_file_group 00:21:45 20 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [224] 00:21:45 20 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [224] 00:21:45 20 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260224) for profiles 00:21:45 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 00:21:46 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/672) 672 to QC_BAD because CT out of water 00:21:46 20 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.051m) 00:21:46 20 Feb 2017 UTC: INFO: QC.py(365): Changed (5/672) 4 295 296 331 332 to QC_PROBABLY_BAD because raw temperature spikes 00:21:46 20 Feb 2017 UTC: INFO: QC.py(408): Changed (3/672) 295 296 332 to QC_PROBABLY_BAD because raw conductivity spikes 00:21:46 20 Feb 2017 UTC: INFO: QC.py(180): Changed (5/672) 4 295 296 331 332 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:21:46 20 Feb 2017 UTC: INFO: QC.py(180): Changed (1/672) 672 to QC_BAD because changed raw cond implies changed raw salinity 00:21:46 20 Feb 2017 UTC: INFO: QC.py(365): Changed (5/672) 4 295 296 331 332 to QC_INTERPOLATED because temperature spikes 00:21:46 20 Feb 2017 UTC: INFO: QC.py(408): Changed (3/672) 295 296 332 to QC_INTERPOLATED because conductivity spikes 00:21:46 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/672) 330:334 to QC_BAD because slow apogee CT flow 00:21:46 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/672) 1:6 to QC_BAD because prior to dive start 00:21:46 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/672) 671 to QC_BAD because end of climb 00:21:46 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/672) 1:6 330:334 671 672 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:21:46 20 Feb 2017 UTC: INFO: QC.py(180): Changed (13/672) 1:6 330:334 671 672 to QC_BAD because changed corrected salin implies changed speed 00:21:46 20 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:21:46 20 Feb 2017 UTC: INFO: QC.py(180): Changed (2/672) 295 296 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 00:21:46 20 Feb 2017 UTC: INFO: QC.py(180): Changed (2/672) 295 296 to QC_INTERPOLATED because changed corrected temp implies changed speed 00:21:46 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.21 cm/s 00:21:46 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.14 cm/s 00:21:46 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:21:46 20 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (210/672) 182:185 187:190 192:195 197:200 202:205 207:210 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:21:46 20 Feb 2017 UTC: INFO: QC.py(180): Changed (3/672) 4 296 331 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:21:46 20 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (210/672) 182:185 187:190 192:195 197:200 202:205 207:210 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 00:21:46 20 Feb 2017 UTC: INFO: QC.py(180): Changed (3/672) 4 296 331 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:21:46 20 Feb 2017 UTC: INFO: QC.py(180): Changed (13/672) 1:6 330:334 671 672 to QC_BAD because changed salinity implies changed optode oxygen 00:21:46 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:21:46 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 00:21:47 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 224: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.93% reduction 00:21:47 20 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.224 00:21:47 20 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:21:47 20 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:21:47 20 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:21:47 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 00:21:47 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 00:23:31 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 00:23:32 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 00:23:32 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 00:23:51 20 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:23:51 20 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:23:51 20 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:23:51 20 Feb 2017 UTC /home/sg626/p6260224.log /home/sg626/p6260224.eng /home/sg626/p6260224.asc /home/sg626/p6260224.pro /home/sg626/p6260224.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 00:23:51 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:23:51 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:23:51 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:23:51 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:23:51 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:23:51 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:23:51 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:23:51 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:23:51 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:23:51 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:23:51 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:23:51 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:23:51 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:23:51 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:23:51 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:23:51 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:23:51 20 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:23:51 20 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:23:51 20 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:23:51 20 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:23:51 20 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:23:51 20 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:23:51 20 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:23:51 20 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 00:23:51 20 Feb 2017 UTC 03:46:36 20 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 4810 03:46:36 20 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:49:35 20 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 4984 03:49:35 20 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:49:35 20 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:49:35 20 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:49:35 20 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:49:35 20 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170219174934 ] 03:49:35 20 Feb 2017 UTC: INFO: Base.py(1333): PID:4991 03:49:35 20 Feb 2017 UTC: INFO: Base.py(1375): Started processing 03:49:35 20 Feb 2017 UTC 03:49:35 20 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:49:35 20 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:49:35 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:49:35 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:49:35 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:225 calls_made:1 call_cycle:0 03:49:35 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:49:35 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:225 calls_made:1 call_cycle:0 03:49:35 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:49:35 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:225 calls_made:1 call_cycle:0 03:49:35 20 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:225 calls_made:1 call_cycle:0 2332.7060 -15628.9530 02/20/17 03:44:31 UTC) to sdrifter@soest.hawaii.edu 03:49:36 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:225 calls_made:1 call_cycle:0 03:49:36 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:49:36 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:225 calls_made:1 call_cycle:0 03:49:36 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:49:36 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:225 calls_made:1 call_cycle:0 03:49:36 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:49:36 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:225 calls_made:1 call_cycle:0 03:49:36 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:49:36 20 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:49:40 20 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:49:40 20 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:49:40 20 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:49:40 20 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:49:40 20 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:49:40 20 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:49:41 20 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0225lz 03:49:41 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225lz.x00 03:49:41 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225lz.x01 03:49:41 20 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0225lz.r in process_file_group 03:49:41 20 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260225.log 03:49:41 20 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:49:41 20 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0225dz 03:49:41 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225dz.x00 03:49:41 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225dz.x01 03:49:41 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225dz.x02 03:49:41 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225dz.x03 03:49:41 20 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0225dz.r in process_file_group 03:49:41 20 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [225] 03:49:41 20 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [225] 03:49:42 20 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260225) for profiles 03:49:42 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 03:49:42 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/658) 658 to QC_BAD because CT out of water 03:49:42 20 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.191m) 03:49:42 20 Feb 2017 UTC: INFO: QC.py(365): Changed (51/658) 345 351 359 360 367 368 372 373 397 398 402 406 ... to QC_PROBABLY_BAD because raw temperature spikes 03:49:42 20 Feb 2017 UTC: INFO: QC.py(408): Changed (2/658) 366 372 to QC_PROBABLY_BAD because raw conductivity spikes 03:49:42 20 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(963): Restarting anomaly after 21.45m: -0.3322 at 286.19m (407) 03:49:42 20 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(963): Restarting anomaly after 103.84m: -0.2820 at 444.47m (462) 03:49:42 20 Feb 2017 UTC: INFO: QC.py(180): Changed (51/658) 345 351 359 360 367 368 372 373 397 398 402 406 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 03:49:42 20 Feb 2017 UTC: INFO: QC.py(180): Changed (1/658) 366 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 03:49:42 20 Feb 2017 UTC: INFO: QC.py(180): Changed (1/658) 658 to QC_BAD because changed raw cond implies changed raw salinity 03:49:42 20 Feb 2017 UTC: INFO: QC.py(365): Changed (51/658) 345 351 359 360 367 368 372 373 397 398 402 406 ... to QC_INTERPOLATED because temperature spikes 03:49:42 20 Feb 2017 UTC: INFO: QC.py(408): Changed (2/658) 366 372 to QC_INTERPOLATED because conductivity spikes 03:49:42 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3145): SUGGESTION: 225 bad_temperature data_points between 332 553 % possible wafting warm water on dive at 1 points 03:49:42 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/658) 555:559 to QC_BAD because slow apogee CT flow 03:49:42 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/658) 1:6 to QC_BAD because prior to dive start 03:49:42 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/658) 1:6 555:559 658 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:49:42 20 Feb 2017 UTC: INFO: QC.py(180): Changed (12/658) 1:6 555:559 658 to QC_BAD because changed corrected salin implies changed speed 03:49:42 20 Feb 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 52 stalled points 321 346 348 349 354 358:361 365 366 369 372:374 378 390 391 400 402 403 406 418 424 429 434 448 452 455:457 459 461 463 466 471 475 489 492 498 513 516 519 520 524 528 537 542 544 545 550 554 03:49:43 20 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 3 iterations 03:49:43 20 Feb 2017 UTC: INFO: QC.py(180): Changed (51/658) 345 351 359 360 367 368 372 373 397 398 402 406 ... to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 03:49:43 20 Feb 2017 UTC: INFO: QC.py(180): Changed (1/658) 366 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 03:49:43 20 Feb 2017 UTC: INFO: QC.py(180): Changed (51/658) 345 351 359 360 367 368 372 373 397 398 402 406 ... to QC_INTERPOLATED because changed corrected temp implies changed speed 03:49:43 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 23.51 cm/s 03:49:43 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 5.08 cm/s 03:49:43 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:49:43 20 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (174/658) 378:380 382:385 387:390 392:395 397:400 402:405 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:49:43 20 Feb 2017 UTC: INFO: QC.py(180): Changed (18/658) 345 351 359 360 367 368 372 373 406 436 456 461 ... to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:49:43 20 Feb 2017 UTC: INFO: sbe43_ext.py(293): Changed (216/658) 321 340:554 to QC_BAD because slow flow in SBE43 03:49:43 20 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (174/658) 378:380 382:385 387:390 392:395 397:400 402:405 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 03:49:43 20 Feb 2017 UTC: INFO: QC.py(180): Changed (18/658) 345 351 359 360 367 368 372 373 406 436 456 461 ... to QC_INTERPOLATED because changed temperature implies changed optode oxygen 03:49:43 20 Feb 2017 UTC: INFO: QC.py(180): Changed (12/658) 1:6 555:559 658 to QC_BAD because changed salinity implies changed optode oxygen 03:49:43 20 Feb 2017 UTC: INFO: QC.py(180): Changed (1/658) 366 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 03:49:43 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:49:43 20 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:49:43 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 03:49:43 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 225: Data set size for profile, binned and kkyy files reduced by 12 points, a 1.82% reduction 03:49:43 20 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.225 03:49:43 20 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:49:43 20 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:49:43 20 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:49:43 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 03:49:43 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 03:51:27 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 03:51:27 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 03:51:27 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 03:51:46 20 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:51:46 20 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:51:46 20 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:51:46 20 Feb 2017 UTC /home/sg626/p6260225.log /home/sg626/p6260225.eng /home/sg626/p6260225.asc /home/sg626/p6260225.pro /home/sg626/p6260225.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 03:51:46 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:51:46 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:51:46 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:51:46 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:51:46 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:51:46 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:51:46 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:51:46 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:51:46 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:51:46 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:51:46 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:51:46 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:51:46 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:51:46 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:51:46 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:51:46 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:51:46 20 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:51:46 20 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:51:46 20 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:51:46 20 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:51:46 20 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:51:46 20 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:51:46 20 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:51:46 20 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 03:51:46 20 Feb 2017 UTC 06:58:01 20 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 14004 06:58:01 20 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 07:01:07 20 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 14526 07:01:07 20 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:01:07 20 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:01:07 20 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:01:07 20 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:01:07 20 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170219210106 ] 07:01:07 20 Feb 2017 UTC: INFO: Base.py(1333): PID:14534 07:01:07 20 Feb 2017 UTC: INFO: Base.py(1375): Started processing 07:01:07 20 Feb 2017 UTC 07:01:07 20 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:01:07 20 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:01:07 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:01:07 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:01:07 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:1 call_cycle:0 07:01:07 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:01:07 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:1 call_cycle:0 07:01:07 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:01:07 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:1 call_cycle:0 07:01:07 20 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:226 calls_made:1 call_cycle:0 2333.2770 -15628.4910 02/20/17 06:55:54 UTC) to sdrifter@soest.hawaii.edu 07:01:08 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:1 call_cycle:0 07:01:08 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:01:08 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:1 call_cycle:0 07:01:08 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:01:08 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:1 call_cycle:0 07:01:08 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:01:08 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:1 call_cycle:0 07:01:08 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:01:08 20 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:01:11 20 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:01:12 20 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:01:12 20 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:01:12 20 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:01:12 20 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:01:12 20 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:01:13 20 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0226lz 07:01:13 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0226lz.x00 07:01:13 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0226lz.x01 07:01:13 20 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0226lz.r in process_file_group 07:01:13 20 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260226.log 07:01:13 20 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:01:13 20 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0226dz 07:01:13 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0226dz.x00 07:01:13 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0226dz.x01 07:01:13 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0226dz.x02 07:01:13 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0226dz.x03 07:01:13 20 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0226dz.r in process_file_group 07:01:13 20 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [226] 07:01:13 20 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [226] 07:01:13 20 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260226) for profiles 07:01:13 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 07:01:14 20 Feb 2017 UTC: INFO: QC.py(365): Changed (2/570) 3 236 to QC_PROBABLY_BAD because raw temperature spikes 07:01:14 20 Feb 2017 UTC: INFO: QC.py(408): Changed (1/570) 2 to QC_PROBABLY_BAD because raw conductivity spikes 07:01:14 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/570) 570 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 07:01:14 20 Feb 2017 UTC: INFO: QC.py(180): Changed (2/570) 3 236 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:01:14 20 Feb 2017 UTC: INFO: QC.py(180): Changed (1/570) 2 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 07:01:14 20 Feb 2017 UTC: INFO: QC.py(180): Changed (1/570) 570 to QC_BAD because changed raw cond implies changed raw salinity 07:01:14 20 Feb 2017 UTC: INFO: QC.py(365): Changed (2/570) 3 236 to QC_INTERPOLATED because temperature spikes 07:01:14 20 Feb 2017 UTC: INFO: QC.py(408): Changed (1/570) 2 to QC_INTERPOLATED because conductivity spikes 07:01:14 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/570) 570 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 07:01:14 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/570) 234:238 to QC_BAD because slow apogee CT flow 07:01:14 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (8/570) 1:8 to QC_BAD because prior to dive start 07:01:14 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/570) 1:8 234:238 570 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:01:14 20 Feb 2017 UTC: INFO: QC.py(180): Changed (14/570) 1:8 234:238 570 to QC_BAD because changed corrected salin implies changed speed 07:01:14 20 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:01:14 20 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 226 interp_salinity data_points in_between 361 373 % suspect thermal-inertia points 371 372 07:01:14 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.98 cm/s 07:01:14 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.44 cm/s 07:01:14 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:01:14 20 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (164/570) 130 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:01:14 20 Feb 2017 UTC: INFO: QC.py(180): Changed (2/570) 3 236 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:01:14 20 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (164/570) 130 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 07:01:14 20 Feb 2017 UTC: INFO: QC.py(180): Changed (2/570) 3 236 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:01:14 20 Feb 2017 UTC: INFO: QC.py(180): Changed (14/570) 1:8 234:238 570 to QC_BAD because changed salinity implies changed optode oxygen 07:01:14 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:01:14 20 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:01:14 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 07:01:15 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 226: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.46% reduction 07:01:15 20 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.226 07:01:15 20 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.226 07:01:15 20 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:01:15 20 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:01:15 20 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:01:15 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 07:01:15 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:02:59 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 07:03:00 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:03:00 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:03:04 20 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 14791 07:03:04 20 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 07:03:19 20 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:03:19 20 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:03:19 20 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:03:19 20 Feb 2017 UTC /home/sg626/p6260226.log /home/sg626/p6260226.eng /home/sg626/p6260226.asc /home/sg626/p6260226.pro /home/sg626/p6260226.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:03:19 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:03:19 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:03:19 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:03:19 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:03:19 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:03:19 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:03:19 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:03:19 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:03:19 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:03:19 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:03:19 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:03:19 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:03:19 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:03:19 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:03:19 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:03:19 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:03:19 20 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:03:19 20 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:03:19 20 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:03:19 20 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:03:19 20 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:03:19 20 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:03:19 20 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:03:19 20 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 07:03:19 20 Feb 2017 UTC 07:04:17 20 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 15005 07:04:17 20 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:04:17 20 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:04:17 20 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:04:17 20 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:04:17 20 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170219210417 ] 07:04:17 20 Feb 2017 UTC: INFO: Base.py(1333): PID:15012 07:04:17 20 Feb 2017 UTC: INFO: Base.py(1375): Started processing 07:04:17 20 Feb 2017 UTC 07:04:17 20 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:04:18 20 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:04:18 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:04:18 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:04:18 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:1 call_cycle:1 07:04:18 20 Feb 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:226 calls_made:1 call_cycle:1 2333.1940 -15628.4600 02/20/17 07:01:42 UTC QUIT_COMMAND) to 8082269543@txt.att.net 07:04:18 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:04:18 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:1 call_cycle:1 07:04:18 20 Feb 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:226 calls_made:1 call_cycle:1 2333.1940 -15628.4600 02/20/17 07:01:42 UTC QUIT_COMMAND) to 8087808045@vtext.com 07:04:18 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:04:18 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:1 call_cycle:1 07:04:18 20 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:226 calls_made:1 call_cycle:1 2333.1940 -15628.4600 02/20/17 07:01:42 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 07:04:18 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:1 call_cycle:1 07:04:18 20 Feb 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:226 calls_made:1 call_cycle:1 2333.1940 -15628.4600 02/20/17 07:01:42 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 07:04:18 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:04:18 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:1 call_cycle:1 07:04:18 20 Feb 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:226 calls_made:1 call_cycle:1 2333.1940 -15628.4600 02/20/17 07:01:42 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 07:04:18 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:04:18 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:1 call_cycle:1 07:04:18 20 Feb 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:226 calls_made:1 call_cycle:1 2333.1940 -15628.4600 02/20/17 07:01:42 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 07:04:18 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:04:18 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:1 call_cycle:1 07:04:18 20 Feb 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:226 calls_made:1 call_cycle:1 2333.1940 -15628.4600 02/20/17 07:01:42 UTC QUIT_COMMAND) to hramm@hawaii.edu 07:04:18 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:04:18 20 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:04:22 20 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:04:23 20 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:04:23 20 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:04:23 20 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:04:23 20 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:04:23 20 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:04:24 20 Feb 2017 UTC: WARNING: Base.py(1624): No dives to process 07:04:24 20 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [] 07:04:24 20 Feb 2017 UTC: INFO: Base.py(1780): No dives found to profile 07:04:24 20 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.226.1 07:04:24 20 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:04:24 20 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:04:24 20 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:04:24 20 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:04:24 20 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:04:24 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:04:24 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:04:24 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:04:24 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:04:24 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:04:24 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:04:24 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:04:24 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:04:24 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:04:24 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:04:24 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:04:24 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:04:24 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:04:24 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:04:24 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:04:24 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:04:24 20 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:04:24 20 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:04:24 20 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:04:24 20 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:04:24 20 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:04:24 20 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:04:24 20 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:04:24 20 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 07:04:24 20 Feb 2017 UTC 07:11:11 20 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 15624 07:11:11 20 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:12:05 20 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 15722 07:12:05 20 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:12:05 20 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:12:05 20 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:12:05 20 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:12:05 20 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170219211205 ] 07:12:05 20 Feb 2017 UTC: INFO: Base.py(1333): PID:15730 07:12:05 20 Feb 2017 UTC: INFO: Base.py(1375): Started processing 07:12:05 20 Feb 2017 UTC 07:12:05 20 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:12:06 20 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:12:06 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:12:06 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:12:06 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:2 call_cycle:2 07:12:06 20 Feb 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:226 calls_made:2 call_cycle:2 2333.1500 -15628.3900 02/20/17 07:07:31 UTC QUIT_COMMAND) to 8082269543@txt.att.net 07:12:06 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:12:06 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:2 call_cycle:2 07:12:06 20 Feb 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:226 calls_made:2 call_cycle:2 2333.1500 -15628.3900 02/20/17 07:07:31 UTC QUIT_COMMAND) to 8087808045@vtext.com 07:12:06 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:12:06 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:2 call_cycle:2 07:12:06 20 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:226 calls_made:2 call_cycle:2 2333.1500 -15628.3900 02/20/17 07:07:31 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 07:12:06 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:2 call_cycle:2 07:12:06 20 Feb 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:226 calls_made:2 call_cycle:2 2333.1500 -15628.3900 02/20/17 07:07:31 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 07:12:06 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:12:06 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:2 call_cycle:2 07:12:06 20 Feb 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:226 calls_made:2 call_cycle:2 2333.1500 -15628.3900 02/20/17 07:07:31 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 07:12:06 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:12:06 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:2 call_cycle:2 07:12:06 20 Feb 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:226 calls_made:2 call_cycle:2 2333.1500 -15628.3900 02/20/17 07:07:31 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 07:12:06 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:12:06 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:2 call_cycle:2 07:12:06 20 Feb 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:226 calls_made:2 call_cycle:2 2333.1500 -15628.3900 02/20/17 07:07:31 UTC QUIT_COMMAND) to hramm@hawaii.edu 07:12:06 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:12:06 20 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:12:10 20 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:12:11 20 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:12:11 20 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:12:11 20 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:12:11 20 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:12:11 20 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:12:12 20 Feb 2017 UTC: WARNING: Base.py(1624): No dives to process 07:12:12 20 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [] 07:12:12 20 Feb 2017 UTC: INFO: Base.py(1780): No dives found to profile 07:12:12 20 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.226.2 07:12:12 20 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:12:12 20 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:12:12 20 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:12:12 20 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:12:12 20 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:12:12 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:12:12 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:12:12 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:12:12 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:12:12 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:12:12 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:12:12 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:12:12 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:12:12 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:12:12 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:12:12 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:12:12 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:12:12 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:12:12 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:12:12 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:12:12 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:12:12 20 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:12:12 20 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:12:12 20 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:12:12 20 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:12:12 20 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:12:12 20 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:12:12 20 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:12:12 20 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 07:12:12 20 Feb 2017 UTC 07:16:41 20 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 16118 07:16:41 20 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:17:41 20 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 16225 07:17:41 20 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:17:41 20 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:17:41 20 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:17:41 20 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:17:41 20 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170219211741 ] 07:17:41 20 Feb 2017 UTC: INFO: Base.py(1333): PID:16232 07:17:41 20 Feb 2017 UTC: INFO: Base.py(1375): Started processing 07:17:41 20 Feb 2017 UTC 07:17:41 20 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:17:42 20 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:17:42 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:17:42 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:17:42 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:1 call_cycle:3 07:17:42 20 Feb 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:226 calls_made:1 call_cycle:3 2333.0540 -15628.3310 02/20/17 07:15:17 UTC QUIT_COMMAND) to 8082269543@txt.att.net 07:17:42 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:17:42 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:1 call_cycle:3 07:17:42 20 Feb 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:226 calls_made:1 call_cycle:3 2333.0540 -15628.3310 02/20/17 07:15:17 UTC QUIT_COMMAND) to 8087808045@vtext.com 07:17:42 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:17:42 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:1 call_cycle:3 07:17:42 20 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:226 calls_made:1 call_cycle:3 2333.0540 -15628.3310 02/20/17 07:15:17 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 07:17:42 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:1 call_cycle:3 07:17:42 20 Feb 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:226 calls_made:1 call_cycle:3 2333.0540 -15628.3310 02/20/17 07:15:17 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 07:17:42 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:17:42 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:1 call_cycle:3 07:17:42 20 Feb 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:226 calls_made:1 call_cycle:3 2333.0540 -15628.3310 02/20/17 07:15:17 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 07:17:42 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:17:42 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:1 call_cycle:3 07:17:42 20 Feb 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:226 calls_made:1 call_cycle:3 2333.0540 -15628.3310 02/20/17 07:15:17 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 07:17:42 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:17:42 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:1 call_cycle:3 07:17:42 20 Feb 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:226 calls_made:1 call_cycle:3 2333.0540 -15628.3310 02/20/17 07:15:17 UTC QUIT_COMMAND) to hramm@hawaii.edu 07:17:42 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:17:42 20 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:17:46 20 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:17:47 20 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:17:47 20 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:17:47 20 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:17:47 20 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:17:47 20 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:17:48 20 Feb 2017 UTC: WARNING: Base.py(1624): No dives to process 07:17:48 20 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [] 07:17:48 20 Feb 2017 UTC: INFO: Base.py(1780): No dives found to profile 07:17:48 20 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.226.3 07:17:48 20 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:17:48 20 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:17:48 20 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:17:48 20 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:17:48 20 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:17:48 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:17:48 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:17:48 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:17:48 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:17:48 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:17:48 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:17:48 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:17:48 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:17:48 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:17:48 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:17:48 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:17:48 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:17:48 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:17:48 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:17:48 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:17:48 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:17:48 20 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:17:48 20 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:17:48 20 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:17:48 20 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:17:48 20 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:17:48 20 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:17:48 20 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:17:48 20 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 07:17:48 20 Feb 2017 UTC 07:22:53 20 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 16783 07:22:53 20 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:23:49 20 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 16893 07:23:49 20 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:23:49 20 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:23:49 20 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:23:49 20 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:23:49 20 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170219212349 ] 07:23:49 20 Feb 2017 UTC: INFO: Base.py(1333): PID:16901 07:23:49 20 Feb 2017 UTC: INFO: Base.py(1375): Started processing 07:23:49 20 Feb 2017 UTC 07:23:49 20 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:23:50 20 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:23:50 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:23:50 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:23:50 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:1 call_cycle:4 07:23:50 20 Feb 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:226 calls_made:1 call_cycle:4 2332.9970 -15628.2970 02/20/17 07:21:27 UTC QUIT_COMMAND) to 8082269543@txt.att.net 07:23:50 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:23:50 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:1 call_cycle:4 07:23:50 20 Feb 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:226 calls_made:1 call_cycle:4 2332.9970 -15628.2970 02/20/17 07:21:27 UTC QUIT_COMMAND) to 8087808045@vtext.com 07:23:50 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:23:50 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:1 call_cycle:4 07:23:50 20 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:226 calls_made:1 call_cycle:4 2332.9970 -15628.2970 02/20/17 07:21:27 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 07:23:50 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:1 call_cycle:4 07:23:50 20 Feb 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:226 calls_made:1 call_cycle:4 2332.9970 -15628.2970 02/20/17 07:21:27 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 07:23:50 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:23:50 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:1 call_cycle:4 07:23:50 20 Feb 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:226 calls_made:1 call_cycle:4 2332.9970 -15628.2970 02/20/17 07:21:27 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 07:23:50 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:23:50 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:1 call_cycle:4 07:23:50 20 Feb 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:226 calls_made:1 call_cycle:4 2332.9970 -15628.2970 02/20/17 07:21:27 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 07:23:50 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:23:50 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:226 calls_made:1 call_cycle:4 07:23:50 20 Feb 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:226 calls_made:1 call_cycle:4 2332.9970 -15628.2970 02/20/17 07:21:27 UTC QUIT_COMMAND) to hramm@hawaii.edu 07:23:50 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:23:50 20 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:23:55 20 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:23:55 20 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:23:55 20 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:23:55 20 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:23:55 20 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:23:55 20 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:23:56 20 Feb 2017 UTC: WARNING: Base.py(1624): No dives to process 07:23:56 20 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [] 07:23:56 20 Feb 2017 UTC: INFO: Base.py(1780): No dives found to profile 07:23:56 20 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.226.4 07:23:56 20 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:23:56 20 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:23:56 20 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:23:56 20 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:23:56 20 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:23:56 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:23:56 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:23:56 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:23:56 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:23:56 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:23:56 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:23:56 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:23:56 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:23:56 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:23:56 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:23:56 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:23:56 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:23:56 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:23:56 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:23:56 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:23:56 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:23:56 20 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:23:56 20 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:23:56 20 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:23:56 20 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:23:56 20 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:23:56 20 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:23:56 20 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:23:56 20 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 07:23:56 20 Feb 2017 UTC 10:22:10 20 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 25311 10:22:10 20 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:24:46 20 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 25477 10:24:46 20 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:24:46 20 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:24:46 20 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:24:46 20 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:24:46 20 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170220002445 ] 10:24:46 20 Feb 2017 UTC: INFO: Base.py(1333): PID:25484 10:24:46 20 Feb 2017 UTC: INFO: Base.py(1375): Started processing 10:24:46 20 Feb 2017 UTC 10:24:46 20 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:24:47 20 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:24:47 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:24:47 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:24:47 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:227 calls_made:1 call_cycle:0 10:24:47 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:24:47 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:227 calls_made:1 call_cycle:0 10:24:47 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:24:47 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:227 calls_made:1 call_cycle:0 10:24:47 20 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:227 calls_made:1 call_cycle:0 2331.9130 -15628.5730 02/20/17 10:20:07 UTC) to sdrifter@soest.hawaii.edu 10:24:47 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:227 calls_made:1 call_cycle:0 10:24:47 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:24:47 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:227 calls_made:1 call_cycle:0 10:24:47 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:24:47 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:227 calls_made:1 call_cycle:0 10:24:47 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:24:47 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:227 calls_made:1 call_cycle:0 10:24:47 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:24:47 20 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:24:51 20 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:24:51 20 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:24:51 20 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:24:51 20 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:24:51 20 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:24:51 20 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:24:52 20 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0227lz 10:24:52 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0227lz.x00 10:24:52 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0227lz.x01 10:24:52 20 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0227lz.r in process_file_group 10:24:52 20 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260227.log 10:24:52 20 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:24:52 20 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0227dz 10:24:52 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0227dz.x00 10:24:52 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0227dz.x01 10:24:52 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0227dz.x02 10:24:52 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0227dz.x03 10:24:52 20 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0227dz.r in process_file_group 10:24:53 20 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [227] 10:24:53 20 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [227] 10:24:53 20 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260227) for profiles 10:24:53 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 10:24:53 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/517) 517 to QC_BAD because CT out of water 10:24:53 20 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.003m) 10:24:53 20 Feb 2017 UTC: INFO: QC.py(377): Changed (1/517) 517 to QC_BAD because raw salinity below bound 10:24:53 20 Feb 2017 UTC: INFO: QC.py(377): Changed (1/517) 517 to QC_BAD because salinity below bound 10:24:53 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/517) 235:239 to QC_BAD because slow apogee CT flow 10:24:53 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/517) 1:7 to QC_BAD because prior to dive start 10:24:53 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/517) 1:7 235:239 517 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:24:53 20 Feb 2017 UTC: INFO: QC.py(180): Changed (13/517) 1:7 235:239 517 to QC_BAD because changed corrected salin implies changed speed 10:24:53 20 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 10:24:53 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.50 cm/s 10:24:53 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.13 cm/s 10:24:53 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:24:53 20 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (157/517) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:24:53 20 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (157/517) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 10:24:53 20 Feb 2017 UTC: INFO: QC.py(180): Changed (13/517) 1:7 235:239 517 to QC_BAD because changed salinity implies changed optode oxygen 10:24:53 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:24:53 20 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:24:53 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 10:24:54 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 227: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.51% reduction 10:24:54 20 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.227 10:24:54 20 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:24:54 20 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:24:54 20 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:24:54 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 10:24:54 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 10:26:38 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 10:26:38 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 10:26:38 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 10:26:58 20 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:26:58 20 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:26:58 20 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 10:26:58 20 Feb 2017 UTC /home/sg626/p6260227.log /home/sg626/p6260227.eng /home/sg626/p6260227.asc /home/sg626/p6260227.pro /home/sg626/p6260227.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 10:26:58 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:26:58 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:26:58 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:26:58 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:26:58 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:26:58 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:26:58 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:26:58 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:26:58 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:26:58 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:26:58 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:26:58 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:26:58 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:26:58 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:26:58 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:26:58 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:26:58 20 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:26:58 20 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:26:58 20 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:26:58 20 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:26:58 20 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:26:58 20 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:26:58 20 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:26:58 20 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 10:26:58 20 Feb 2017 UTC 13:29:34 20 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 1562 13:29:34 20 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:32:13 20 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 1766 13:32:13 20 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:32:13 20 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:32:13 20 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:32:13 20 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:32:13 20 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170220033213 ] 13:32:13 20 Feb 2017 UTC: INFO: Base.py(1333): PID:1774 13:32:13 20 Feb 2017 UTC: INFO: Base.py(1375): Started processing 13:32:13 20 Feb 2017 UTC 13:32:13 20 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:32:14 20 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:32:14 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:32:14 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:32:14 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:228 calls_made:1 call_cycle:0 13:32:14 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:32:14 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:228 calls_made:1 call_cycle:0 13:32:14 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:32:14 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:228 calls_made:1 call_cycle:0 13:32:14 20 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:228 calls_made:1 call_cycle:0 2330.4600 -15628.8810 02/20/17 13:27:30 UTC) to sdrifter@soest.hawaii.edu 13:32:14 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:228 calls_made:1 call_cycle:0 13:32:14 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:32:14 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:228 calls_made:1 call_cycle:0 13:32:14 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:32:14 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:228 calls_made:1 call_cycle:0 13:32:14 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:32:14 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:228 calls_made:1 call_cycle:0 13:32:14 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:32:14 20 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:32:18 20 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:32:19 20 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:32:19 20 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:32:19 20 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:32:19 20 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:32:19 20 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:32:20 20 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0228lz 13:32:20 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0228lz.x00 13:32:20 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0228lz.x01 13:32:20 20 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0228lz.r in process_file_group 13:32:20 20 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260228.log 13:32:20 20 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:32:20 20 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0228dz 13:32:20 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0228dz.x00 13:32:20 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0228dz.x01 13:32:20 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0228dz.x02 13:32:20 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0228dz.x03 13:32:20 20 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0228dz.r in process_file_group 13:32:20 20 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [228] 13:32:20 20 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [228] 13:32:20 20 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260228) for profiles 13:32:20 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:32:20 20 Feb 2017 UTC: INFO: QC.py(365): Changed (6/558) 2 5 199 200 235 557 to QC_PROBABLY_BAD because raw temperature spikes 13:32:20 20 Feb 2017 UTC: INFO: QC.py(377): Changed (1/558) 557 to QC_BAD because raw salinity below bound 13:32:20 20 Feb 2017 UTC: INFO: QC.py(408): Changed (3/558) 199 200 557 to QC_PROBABLY_BAD because raw conductivity spikes 13:32:20 20 Feb 2017 UTC: INFO: QC.py(180): Changed (5/558) 2 5 199 200 235 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:32:20 20 Feb 2017 UTC: INFO: QC.py(365): Changed (6/558) 2 5 199 200 235 557 to QC_INTERPOLATED because temperature spikes 13:32:20 20 Feb 2017 UTC: INFO: QC.py(377): Changed (1/558) 557 to QC_BAD because salinity below bound 13:32:20 20 Feb 2017 UTC: INFO: QC.py(388): Changed (1/558) 557 to QC_BAD because bad salinity indicates conductivity issues 13:32:20 20 Feb 2017 UTC: INFO: QC.py(408): Changed (2/558) 199 200 to QC_INTERPOLATED because conductivity spikes 13:32:20 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/558) 233:237 to QC_BAD because slow apogee CT flow 13:32:20 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/558) 1:7 to QC_BAD because prior to dive start 13:32:20 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/558) 558 to QC_BAD because end of climb 13:32:20 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/558) 1:7 233:237 557 558 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:32:20 20 Feb 2017 UTC: INFO: QC.py(180): Changed (14/558) 1:7 233:237 557 558 to QC_BAD because changed corrected salin implies changed speed 13:32:21 20 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:32:21 20 Feb 2017 UTC: INFO: QC.py(180): Changed (2/558) 199 200 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 13:32:21 20 Feb 2017 UTC: INFO: QC.py(180): Changed (2/558) 199 200 to QC_INTERPOLATED because changed corrected temp implies changed speed 13:32:21 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.71 cm/s 13:32:21 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.02 cm/s 13:32:21 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:32:21 20 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (158/558) 135 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:32:21 20 Feb 2017 UTC: INFO: QC.py(180): Changed (3/558) 2 5 557 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:32:21 20 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (158/558) 135 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:32:21 20 Feb 2017 UTC: INFO: QC.py(180): Changed (3/558) 2 5 557 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:32:21 20 Feb 2017 UTC: INFO: QC.py(180): Changed (14/558) 1:7 233:237 557 558 to QC_BAD because changed salinity implies changed optode oxygen 13:32:21 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:32:21 20 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:32:21 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:32:21 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 228: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.51% reduction 13:32:21 20 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.228 13:32:21 20 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:32:21 20 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:32:21 20 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:32:22 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:32:22 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:34:08 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 13:34:09 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:34:09 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:34:28 20 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:34:28 20 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:34:28 20 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:34:28 20 Feb 2017 UTC /home/sg626/p6260228.log /home/sg626/p6260228.eng /home/sg626/p6260228.asc /home/sg626/p6260228.pro /home/sg626/p6260228.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:34:28 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:34:28 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:34:28 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:34:28 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:34:28 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:34:28 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:34:28 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:34:28 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:34:28 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:34:28 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:34:28 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:34:28 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:34:28 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:34:28 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:34:28 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:34:28 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:34:28 20 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:34:28 20 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:34:28 20 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:34:28 20 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:34:28 20 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:34:28 20 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:34:28 20 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:34:28 20 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 13:34:28 20 Feb 2017 UTC 16:34:35 20 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 6879 16:34:35 20 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:37:18 20 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 6992 16:37:18 20 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:37:18 20 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:37:18 20 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:37:18 20 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:37:18 20 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170220063717 ] 16:37:18 20 Feb 2017 UTC: INFO: Base.py(1333): PID:7000 16:37:18 20 Feb 2017 UTC: INFO: Base.py(1375): Started processing 16:37:18 20 Feb 2017 UTC 16:37:18 20 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:37:18 20 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:37:18 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:37:18 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:37:18 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:229 calls_made:1 call_cycle:0 16:37:18 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:37:18 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:229 calls_made:1 call_cycle:0 16:37:18 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:37:18 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:229 calls_made:1 call_cycle:0 16:37:18 20 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:229 calls_made:1 call_cycle:0 2328.8890 -15629.3270 02/20/17 16:32:34 UTC) to sdrifter@soest.hawaii.edu 16:37:19 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:229 calls_made:1 call_cycle:0 16:37:19 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:37:19 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:229 calls_made:1 call_cycle:0 16:37:19 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:37:19 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:229 calls_made:1 call_cycle:0 16:37:19 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:37:19 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:229 calls_made:1 call_cycle:0 16:37:19 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:37:19 20 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:37:23 20 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:37:23 20 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:37:23 20 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:37:23 20 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:37:23 20 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:37:23 20 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:37:24 20 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0229lz 16:37:24 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0229lz.x00 16:37:24 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0229lz.x01 16:37:24 20 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0229lz.r in process_file_group 16:37:24 20 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260229.log 16:37:24 20 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:37:24 20 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0229dz 16:37:24 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0229dz.x00 16:37:24 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0229dz.x01 16:37:24 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0229dz.x02 16:37:24 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0229dz.x03 16:37:24 20 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0229dz.r in process_file_group 16:37:25 20 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [229] 16:37:25 20 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [229] 16:37:25 20 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260229) for profiles 16:37:25 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:37:25 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/557) 556 to QC_BAD because CT out of water 16:37:25 20 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.093m) 16:37:25 20 Feb 2017 UTC: INFO: QC.py(365): Changed (3/557) 194 195 212 to QC_PROBABLY_BAD because raw temperature spikes 16:37:25 20 Feb 2017 UTC: INFO: QC.py(408): Changed (3/557) 194 195 212 to QC_PROBABLY_BAD because raw conductivity spikes 16:37:25 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/557) 557 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 16:37:25 20 Feb 2017 UTC: INFO: QC.py(180): Changed (3/557) 194 195 212 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:37:25 20 Feb 2017 UTC: INFO: QC.py(180): Changed (2/557) 556 557 to QC_BAD because changed raw cond implies changed raw salinity 16:37:25 20 Feb 2017 UTC: INFO: QC.py(365): Changed (3/557) 194 195 212 to QC_INTERPOLATED because temperature spikes 16:37:25 20 Feb 2017 UTC: INFO: QC.py(408): Changed (3/557) 194 195 212 to QC_INTERPOLATED because conductivity spikes 16:37:25 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/557) 557 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 16:37:25 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/557) 235:239 to QC_BAD because slow apogee CT flow 16:37:25 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/557) 1:7 to QC_BAD because prior to dive start 16:37:25 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/557) 555 to QC_BAD because end of climb 16:37:25 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/557) 1:7 235:239 555:557 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:37:25 20 Feb 2017 UTC: INFO: QC.py(180): Changed (15/557) 1:7 235:239 555:557 to QC_BAD because changed corrected salin implies changed speed 16:37:25 20 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:37:25 20 Feb 2017 UTC: INFO: QC.py(180): Changed (3/557) 194 195 212 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 16:37:25 20 Feb 2017 UTC: INFO: QC.py(180): Changed (3/557) 194 195 212 to QC_INTERPOLATED because changed corrected temp implies changed speed 16:37:25 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.62 cm/s 16:37:25 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.98 cm/s 16:37:25 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:37:25 20 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (157/557) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:37:25 20 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (157/557) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:37:25 20 Feb 2017 UTC: INFO: QC.py(180): Changed (15/557) 1:7 235:239 555:557 to QC_BAD because changed salinity implies changed optode oxygen 16:37:25 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:37:25 20 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:37:25 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:37:26 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 229: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.69% reduction 16:37:26 20 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.229 16:37:26 20 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:37:26 20 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:37:26 20 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:37:26 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:37:26 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:39:12 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 16:39:13 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:39:13 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:39:33 20 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:39:33 20 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:39:33 20 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:39:33 20 Feb 2017 UTC /home/sg626/p6260229.log /home/sg626/p6260229.eng /home/sg626/p6260229.asc /home/sg626/p6260229.pro /home/sg626/p6260229.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:39:33 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:39:33 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:39:33 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:39:33 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:39:33 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:39:33 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:39:33 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:39:33 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:39:33 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:39:33 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:39:33 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:39:33 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:39:33 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:39:33 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:39:33 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:39:33 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:39:33 20 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:39:33 20 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:39:33 20 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:39:33 20 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:39:33 20 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:39:33 20 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:39:33 20 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:39:33 20 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 16:39:33 20 Feb 2017 UTC 19:39:05 20 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 13890 19:39:05 20 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:41:52 20 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 14213 19:41:52 20 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:41:52 20 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:41:52 20 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:41:52 20 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:41:52 20 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170220094152 ] 19:41:52 20 Feb 2017 UTC: INFO: Base.py(1333): PID:14223 19:41:52 20 Feb 2017 UTC: INFO: Base.py(1375): Started processing 19:41:52 20 Feb 2017 UTC 19:41:52 20 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:41:53 20 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:41:53 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:41:53 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:41:53 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:230 calls_made:1 call_cycle:0 19:41:53 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:41:53 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:230 calls_made:1 call_cycle:0 19:41:53 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:41:53 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:230 calls_made:1 call_cycle:0 19:41:53 20 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:230 calls_made:1 call_cycle:0 2327.1400 -15629.7730 02/20/17 19:37:00 UTC) to sdrifter@soest.hawaii.edu 19:41:53 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:230 calls_made:1 call_cycle:0 19:41:53 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:41:53 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:230 calls_made:1 call_cycle:0 19:41:53 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:41:53 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:230 calls_made:1 call_cycle:0 19:41:53 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:41:53 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:230 calls_made:1 call_cycle:0 19:41:53 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:41:53 20 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:41:57 20 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:41:58 20 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:41:58 20 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:41:58 20 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:41:58 20 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:41:58 20 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:41:59 20 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0230lz 19:41:59 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0230lz.x00 19:41:59 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0230lz.x01 19:41:59 20 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0230lz.r in process_file_group 19:41:59 20 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260230.log 19:41:59 20 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:41:59 20 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0230dz 19:41:59 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0230dz.x00 19:41:59 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0230dz.x01 19:41:59 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0230dz.x02 19:41:59 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0230dz.x03 19:41:59 20 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0230dz.r in process_file_group 19:41:59 20 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [230] 19:41:59 20 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [230] 19:41:59 20 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260230) for profiles 19:41:59 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 19:41:59 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/555) 554 to QC_BAD because CT out of water 19:41:59 20 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.002m) 19:41:59 20 Feb 2017 UTC: INFO: QC.py(365): Changed (4/555) 2 191 192 233 to QC_PROBABLY_BAD because raw temperature spikes 19:41:59 20 Feb 2017 UTC: INFO: QC.py(408): Changed (2/555) 191 192 to QC_PROBABLY_BAD because raw conductivity spikes 19:41:59 20 Feb 2017 UTC: INFO: QC.py(180): Changed (4/555) 2 191 192 233 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:41:59 20 Feb 2017 UTC: INFO: QC.py(180): Changed (1/555) 554 to QC_BAD because changed raw cond implies changed raw salinity 19:41:59 20 Feb 2017 UTC: INFO: QC.py(365): Changed (4/555) 2 191 192 233 to QC_INTERPOLATED because temperature spikes 19:41:59 20 Feb 2017 UTC: INFO: QC.py(408): Changed (2/555) 191 192 to QC_INTERPOLATED because conductivity spikes 19:41:59 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/555) 231:235 to QC_BAD because slow apogee CT flow 19:41:59 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/555) 1:7 to QC_BAD because prior to dive start 19:41:59 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/555) 553 555 to QC_BAD because end of climb 19:41:59 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/555) 1:7 231:235 553:555 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:41:59 20 Feb 2017 UTC: INFO: QC.py(180): Changed (15/555) 1:7 231:235 553:555 to QC_BAD because changed corrected salin implies changed speed 19:42:00 20 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:42:00 20 Feb 2017 UTC: INFO: QC.py(180): Changed (2/555) 191 192 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 19:42:00 20 Feb 2017 UTC: INFO: QC.py(180): Changed (2/555) 191 192 to QC_INTERPOLATED because changed corrected temp implies changed speed 19:42:00 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.98 cm/s 19:42:00 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.22 cm/s 19:42:00 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:42:00 20 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (156/555) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:42:00 20 Feb 2017 UTC: INFO: QC.py(180): Changed (2/555) 2 191 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 19:42:00 20 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (156/555) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 19:42:00 20 Feb 2017 UTC: INFO: QC.py(180): Changed (2/555) 2 191 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 19:42:00 20 Feb 2017 UTC: INFO: QC.py(180): Changed (15/555) 1:7 231:235 553:555 to QC_BAD because changed salinity implies changed optode oxygen 19:42:00 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:42:00 20 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:42:00 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 19:42:00 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 230: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.70% reduction 19:42:00 20 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.230 19:42:00 20 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:42:00 20 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:42:00 20 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:42:00 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 19:42:00 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 19:43:47 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 19:43:48 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 19:43:48 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 19:44:07 20 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:44:07 20 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:44:07 20 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:44:07 20 Feb 2017 UTC /home/sg626/p6260230.log /home/sg626/p6260230.eng /home/sg626/p6260230.asc /home/sg626/p6260230.pro /home/sg626/p6260230.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 19:44:07 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:44:07 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:44:07 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:44:07 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:44:07 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:44:07 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:44:07 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:44:07 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:44:07 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:44:07 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:44:07 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:44:07 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:44:07 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:44:07 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:44:07 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:44:07 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:44:07 20 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:44:07 20 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:44:07 20 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:44:07 20 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:44:07 20 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:44:07 20 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:44:07 20 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:44:07 20 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 19:44:07 20 Feb 2017 UTC 22:46:38 20 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 22696 22:46:38 20 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:49:25 20 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 22810 22:49:25 20 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:49:25 20 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:49:25 20 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:49:25 20 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:49:25 20 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170220124924 ] 22:49:25 20 Feb 2017 UTC: INFO: Base.py(1333): PID:22818 22:49:25 20 Feb 2017 UTC: INFO: Base.py(1375): Started processing 22:49:25 20 Feb 2017 UTC 22:49:25 20 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:49:26 20 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:49:26 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:49:26 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:49:26 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:231 calls_made:1 call_cycle:0 22:49:26 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:49:26 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:231 calls_made:1 call_cycle:0 22:49:26 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:49:26 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:231 calls_made:1 call_cycle:0 22:49:26 20 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:231 calls_made:1 call_cycle:0 2325.4840 -15629.7530 02/20/17 22:44:33 UTC) to sdrifter@soest.hawaii.edu 22:49:26 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:231 calls_made:1 call_cycle:0 22:49:26 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:49:26 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:231 calls_made:1 call_cycle:0 22:49:26 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:49:26 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:231 calls_made:1 call_cycle:0 22:49:26 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:49:26 20 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:231 calls_made:1 call_cycle:0 22:49:26 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:49:26 20 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:49:30 20 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:49:30 20 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:49:30 20 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:49:30 20 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:49:30 20 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:49:30 20 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:49:31 20 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0231lz 22:49:31 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0231lz.x00 22:49:31 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0231lz.x01 22:49:31 20 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0231lz.r in process_file_group 22:49:31 20 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260231.log 22:49:31 20 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 22:49:31 20 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0231dz 22:49:31 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0231dz.x00 22:49:31 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0231dz.x01 22:49:31 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0231dz.x02 22:49:31 20 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0231dz.x03 22:49:31 20 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0231dz.r in process_file_group 22:49:32 20 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [231] 22:49:32 20 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [231] 22:49:32 20 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260231) for profiles 22:49:32 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 22:49:32 20 Feb 2017 UTC: INFO: QC.py(365): Changed (5/566) 4 5 240 564 565 to QC_PROBABLY_BAD because raw temperature spikes 22:49:32 20 Feb 2017 UTC: INFO: QC.py(377): Changed (1/566) 566 to QC_BAD because raw salinity below bound 22:49:32 20 Feb 2017 UTC: INFO: QC.py(388): Changed (1/566) 566 to QC_BAD because bad raw salinity indicates raw conductivity issues 22:49:32 20 Feb 2017 UTC: INFO: QC.py(180): Changed (5/566) 4 5 240 564 565 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 22:49:32 20 Feb 2017 UTC: INFO: QC.py(365): Changed (5/566) 4 5 240 564 565 to QC_INTERPOLATED because temperature spikes 22:49:32 20 Feb 2017 UTC: INFO: QC.py(377): Changed (1/566) 566 to QC_BAD because salinity below bound 22:49:32 20 Feb 2017 UTC: INFO: QC.py(388): Changed (1/566) 566 to QC_BAD because bad salinity indicates conductivity issues 22:49:32 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/566) 238:242 to QC_BAD because slow apogee CT flow 22:49:32 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/566) 1:7 to QC_BAD because prior to dive start 22:49:32 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/566) 565 to QC_BAD because end of climb 22:49:32 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/566) 1:7 238:242 565 566 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:49:32 20 Feb 2017 UTC: INFO: QC.py(180): Changed (14/566) 1:7 238:242 565 566 to QC_BAD because changed corrected salin implies changed speed 22:49:33 20 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:49:33 20 Feb 2017 UTC: INFO: QC.py(180): Changed (1/566) 564 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 22:49:33 20 Feb 2017 UTC: INFO: QC.py(180): Changed (1/566) 564 to QC_INTERPOLATED because changed corrected temp implies changed speed 22:49:33 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.79 cm/s 22:49:33 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.20 cm/s 22:49:33 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:49:33 20 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (157/566) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:49:33 20 Feb 2017 UTC: INFO: QC.py(180): Changed (4/566) 4 5 564 565 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 22:49:33 20 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (157/566) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 22:49:33 20 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (3/566) 564:566 to QC_BAD because bad aa4330 oyxgen 22:49:33 20 Feb 2017 UTC: INFO: QC.py(180): Changed (2/566) 4 5 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 22:49:33 20 Feb 2017 UTC: INFO: QC.py(180): Changed (12/566) 1:7 238:242 to QC_BAD because changed salinity implies changed optode oxygen 22:49:33 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:49:33 20 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 22:49:33 20 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 22:49:33 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 231: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.47% reduction 22:49:33 20 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.231 22:49:33 20 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:49:33 20 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:49:33 20 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:49:33 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 22:49:33 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 22:51:19 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 22:51:20 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 22:51:20 20 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 22:51:39 20 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:51:39 20 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:51:39 20 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:51:39 20 Feb 2017 UTC /home/sg626/p6260231.log /home/sg626/p6260231.eng /home/sg626/p6260231.asc /home/sg626/p6260231.pro /home/sg626/p6260231.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 22:51:39 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:51:39 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:51:39 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:51:39 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:51:39 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:51:39 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:51:39 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:51:39 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:51:39 20 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:51:39 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:51:39 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:51:39 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:51:39 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:51:39 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:51:39 20 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:51:39 20 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:51:39 20 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:51:39 20 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:51:39 20 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:51:39 20 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:51:39 20 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:51:39 20 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:51:39 20 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:51:39 20 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 22:51:39 20 Feb 2017 UTC 01:55:30 21 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 27846 01:55:30 21 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:58:10 21 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 27961 01:58:10 21 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:58:10 21 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:58:10 21 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:58:10 21 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:58:10 21 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170220155810 ] 01:58:10 21 Feb 2017 UTC: INFO: Base.py(1333): PID:27969 01:58:10 21 Feb 2017 UTC: INFO: Base.py(1375): Started processing 01:58:10 21 Feb 2017 UTC 01:58:10 21 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:58:11 21 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:58:11 21 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:58:11 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:58:11 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:232 calls_made:1 call_cycle:0 01:58:11 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:58:11 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:232 calls_made:1 call_cycle:0 01:58:11 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:58:11 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:232 calls_made:1 call_cycle:0 01:58:11 21 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:232 calls_made:1 call_cycle:0 2323.9300 -15629.5260 02/21/17 01:53:30 UTC) to sdrifter@soest.hawaii.edu 01:58:11 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:232 calls_made:1 call_cycle:0 01:58:11 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:58:11 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:232 calls_made:1 call_cycle:0 01:58:11 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:58:11 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:232 calls_made:1 call_cycle:0 01:58:11 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:58:11 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:232 calls_made:1 call_cycle:0 01:58:11 21 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:58:11 21 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:58:15 21 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:58:16 21 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:58:16 21 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:58:16 21 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:58:16 21 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:58:16 21 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:58:17 21 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0232lz 01:58:17 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0232lz.x00 01:58:17 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0232lz.x01 01:58:17 21 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0232lz.r in process_file_group 01:58:17 21 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260232.log 01:58:17 21 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:58:17 21 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0232dz 01:58:17 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0232dz.x00 01:58:17 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0232dz.x01 01:58:17 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0232dz.x02 01:58:17 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0232dz.x03 01:58:17 21 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0232dz.r in process_file_group 01:58:17 21 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [232] 01:58:17 21 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [232] 01:58:17 21 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260232) for profiles 01:58:17 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:58:17 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/572) 572 to QC_BAD because CT out of water 01:58:17 21 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.027m) 01:58:17 21 Feb 2017 UTC: INFO: QC.py(365): Changed (1/572) 235 to QC_PROBABLY_BAD because raw temperature spikes 01:58:17 21 Feb 2017 UTC: INFO: QC.py(408): Changed (1/572) 235 to QC_PROBABLY_BAD because raw conductivity spikes 01:58:17 21 Feb 2017 UTC: INFO: QC.py(180): Changed (1/572) 235 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:58:17 21 Feb 2017 UTC: INFO: QC.py(180): Changed (1/572) 572 to QC_BAD because changed raw cond implies changed raw salinity 01:58:17 21 Feb 2017 UTC: INFO: QC.py(365): Changed (1/572) 235 to QC_INTERPOLATED because temperature spikes 01:58:17 21 Feb 2017 UTC: INFO: QC.py(408): Changed (1/572) 235 to QC_INTERPOLATED because conductivity spikes 01:58:17 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/572) 233:237 to QC_BAD because slow apogee CT flow 01:58:17 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/572) 1:6 to QC_BAD because prior to dive start 01:58:17 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/572) 1:6 233:237 572 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:58:17 21 Feb 2017 UTC: INFO: QC.py(180): Changed (12/572) 1:6 233:237 572 to QC_BAD because changed corrected salin implies changed speed 01:58:18 21 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:58:18 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.74 cm/s 01:58:18 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.11 cm/s 01:58:18 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:58:18 21 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (162/572) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:58:18 21 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (162/572) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 01:58:18 21 Feb 2017 UTC: INFO: QC.py(180): Changed (12/572) 1:6 233:237 572 to QC_BAD because changed salinity implies changed optode oxygen 01:58:18 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:58:18 21 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:58:18 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:58:19 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 232: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.10% reduction 01:58:19 21 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.232 01:58:19 21 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:58:19 21 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:58:19 21 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:58:19 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:58:19 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 02:00:06 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 02:00:07 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 02:00:07 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 02:00:26 21 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:00:26 21 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:00:26 21 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:00:26 21 Feb 2017 UTC /home/sg626/p6260232.log /home/sg626/p6260232.eng /home/sg626/p6260232.asc /home/sg626/p6260232.pro /home/sg626/p6260232.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 02:00:26 21 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:00:26 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:00:26 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:00:26 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:00:26 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:00:26 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:00:26 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:00:26 21 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:00:26 21 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:00:26 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:00:26 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:00:26 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:00:26 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:00:26 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:00:26 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:00:26 21 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:00:26 21 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:00:26 21 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:00:26 21 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:00:26 21 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:00:26 21 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:00:26 21 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:00:26 21 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:00:26 21 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 02:00:26 21 Feb 2017 UTC 05:03:11 21 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 883 05:03:11 21 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:06:07 21 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 988 05:06:07 21 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:06:07 21 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:06:07 21 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:06:07 21 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:06:07 21 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170220190606 ] 05:06:07 21 Feb 2017 UTC: INFO: Base.py(1333): PID:995 05:06:07 21 Feb 2017 UTC: INFO: Base.py(1375): Started processing 05:06:07 21 Feb 2017 UTC 05:06:07 21 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:06:08 21 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:06:08 21 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:06:08 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:06:08 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:233 calls_made:1 call_cycle:0 05:06:08 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:06:08 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:233 calls_made:1 call_cycle:0 05:06:08 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:06:08 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:233 calls_made:1 call_cycle:0 05:06:08 21 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:233 calls_made:1 call_cycle:0 2322.3920 -15629.5610 02/21/17 05:00:50 UTC) to sdrifter@soest.hawaii.edu 05:06:08 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:233 calls_made:1 call_cycle:0 05:06:08 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:06:08 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:233 calls_made:1 call_cycle:0 05:06:08 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:06:08 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:233 calls_made:1 call_cycle:0 05:06:08 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:06:08 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:233 calls_made:1 call_cycle:0 05:06:08 21 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:06:08 21 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:06:12 21 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:06:13 21 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:06:13 21 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:06:13 21 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:06:13 21 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:06:13 21 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:06:14 21 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0233lz 05:06:14 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0233lz.x00 05:06:14 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0233lz.x01 05:06:14 21 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0233lz.r in process_file_group 05:06:14 21 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260233.log 05:06:14 21 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:06:14 21 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0233dz 05:06:14 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0233dz.x00 05:06:14 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0233dz.x01 05:06:14 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0233dz.x02 05:06:14 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0233dz.x03 05:06:14 21 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0233dz.r in process_file_group 05:06:14 21 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [233] 05:06:14 21 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [233] 05:06:14 21 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260233) for profiles 05:06:14 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:06:14 21 Feb 2017 UTC: INFO: QC.py(365): Changed (3/550) 3 227 549 to QC_PROBABLY_BAD because raw temperature spikes 05:06:14 21 Feb 2017 UTC: INFO: QC.py(408): Changed (2/550) 227 245 to QC_PROBABLY_BAD because raw conductivity spikes 05:06:14 21 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(963): Restarting anomaly after 29.24m: -0.2769 at 272.81m (135) 05:06:14 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/550) 550 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 05:06:14 21 Feb 2017 UTC: INFO: QC.py(180): Changed (3/550) 3 227 549 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:06:14 21 Feb 2017 UTC: INFO: QC.py(180): Changed (1/550) 245 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 05:06:14 21 Feb 2017 UTC: INFO: QC.py(180): Changed (1/550) 550 to QC_BAD because changed raw cond implies changed raw salinity 05:06:14 21 Feb 2017 UTC: INFO: QC.py(365): Changed (3/550) 3 227 549 to QC_INTERPOLATED because temperature spikes 05:06:14 21 Feb 2017 UTC: INFO: QC.py(408): Changed (2/550) 227 245 to QC_INTERPOLATED because conductivity spikes 05:06:14 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/550) 550 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 05:06:14 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/550) 225:229 to QC_BAD because slow apogee CT flow 05:06:14 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/550) 1:6 to QC_BAD because prior to dive start 05:06:14 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/550) 549 to QC_BAD because end of climb 05:06:14 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/550) 1:6 225:229 549 550 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:06:14 21 Feb 2017 UTC: INFO: QC.py(180): Changed (13/550) 1:6 225:229 549 550 to QC_BAD because changed corrected salin implies changed speed 05:06:15 21 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:06:15 21 Feb 2017 UTC: INFO: QC.py(180): Changed (1/550) 245 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 05:06:15 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.27 cm/s 05:06:15 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.24 cm/s 05:06:15 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:06:15 21 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (164/550) 124 125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:06:15 21 Feb 2017 UTC: INFO: QC.py(180): Changed (2/550) 3 549 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:06:15 21 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (164/550) 124 125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:06:15 21 Feb 2017 UTC: INFO: QC.py(180): Changed (2/550) 3 549 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:06:15 21 Feb 2017 UTC: INFO: QC.py(180): Changed (13/550) 1:6 225:229 549 550 to QC_BAD because changed salinity implies changed optode oxygen 05:06:15 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:06:15 21 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:06:15 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 05:06:15 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 233: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.36% reduction 05:06:15 21 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.233 05:06:15 21 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:06:15 21 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:06:15 21 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:06:15 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 05:06:15 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 05:08:02 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 05:08:03 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 05:08:03 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 05:08:22 21 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:08:22 21 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:08:22 21 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:08:22 21 Feb 2017 UTC /home/sg626/p6260233.log /home/sg626/p6260233.eng /home/sg626/p6260233.asc /home/sg626/p6260233.pro /home/sg626/p6260233.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 05:08:22 21 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:08:22 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:08:22 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:08:22 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:08:22 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:08:22 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:08:22 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:08:22 21 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:08:22 21 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:08:22 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:08:22 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:08:22 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:08:22 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:08:22 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:08:22 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:08:22 21 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:08:22 21 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:08:22 21 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:08:22 21 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:08:22 21 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:08:22 21 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:08:22 21 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:08:22 21 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:08:22 21 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 05:08:22 21 Feb 2017 UTC 08:12:15 21 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 6293 08:12:15 21 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:14:55 21 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 6404 08:14:55 21 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:14:55 21 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:14:55 21 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:14:55 21 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:14:55 21 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170220221454 ] 08:14:55 21 Feb 2017 UTC: INFO: Base.py(1333): PID:6412 08:14:55 21 Feb 2017 UTC: INFO: Base.py(1375): Started processing 08:14:55 21 Feb 2017 UTC 08:14:55 21 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:14:56 21 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:14:56 21 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:14:56 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:14:56 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:234 calls_made:1 call_cycle:0 08:14:56 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:14:56 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:234 calls_made:1 call_cycle:0 08:14:56 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:14:56 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:234 calls_made:1 call_cycle:0 08:14:56 21 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:234 calls_made:1 call_cycle:0 2321.7090 -15629.8530 02/21/17 08:10:13 UTC) to sdrifter@soest.hawaii.edu 08:14:56 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:234 calls_made:1 call_cycle:0 08:14:56 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:14:56 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:234 calls_made:1 call_cycle:0 08:14:56 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:14:56 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:234 calls_made:1 call_cycle:0 08:14:56 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:14:56 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:234 calls_made:1 call_cycle:0 08:14:56 21 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:14:56 21 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:15:00 21 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:15:01 21 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:15:01 21 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:15:01 21 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:15:01 21 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:15:01 21 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:15:02 21 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0234lz 08:15:02 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0234lz.x00 08:15:02 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0234lz.x01 08:15:02 21 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0234lz.r in process_file_group 08:15:02 21 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260234.log 08:15:02 21 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:15:02 21 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0234dz 08:15:02 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0234dz.x00 08:15:02 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0234dz.x01 08:15:02 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0234dz.x02 08:15:02 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0234dz.x03 08:15:02 21 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0234dz.r in process_file_group 08:15:02 21 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [234] 08:15:02 21 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [234] 08:15:02 21 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260234) for profiles 08:15:02 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:15:02 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/540) 540 to QC_BAD because CT out of water 08:15:02 21 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.068m) 08:15:02 21 Feb 2017 UTC: INFO: QC.py(365): Changed (2/540) 214 238 to QC_PROBABLY_BAD because raw temperature spikes 08:15:02 21 Feb 2017 UTC: INFO: QC.py(408): Changed (2/540) 214 238 to QC_PROBABLY_BAD because raw conductivity spikes 08:15:02 21 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <197 pt uncorrectable 964.2m SUSPECT weak conductivity anomaly n:-0.29 p:0.31> 08:15:02 21 Feb 2017 UTC: INFO: QC.py(180): Changed (2/540) 214 238 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:15:02 21 Feb 2017 UTC: INFO: QC.py(180): Changed (1/540) 540 to QC_BAD because changed raw cond implies changed raw salinity 08:15:02 21 Feb 2017 UTC: INFO: QC.py(365): Changed (2/540) 214 238 to QC_INTERPOLATED because temperature spikes 08:15:02 21 Feb 2017 UTC: INFO: QC.py(408): Changed (2/540) 214 238 to QC_INTERPOLATED because conductivity spikes 08:15:02 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/540) 236:240 to QC_BAD because slow apogee CT flow 08:15:02 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/540) 1:6 to QC_BAD because prior to dive start 08:15:02 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/540) 539 to QC_BAD because end of climb 08:15:02 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/540) 1:6 236:240 539 540 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:15:02 21 Feb 2017 UTC: INFO: QC.py(180): Changed (13/540) 1:6 236:240 539 540 to QC_BAD because changed corrected salin implies changed speed 08:15:03 21 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:15:03 21 Feb 2017 UTC: INFO: QC.py(180): Changed (1/540) 214 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 08:15:03 21 Feb 2017 UTC: INFO: QC.py(180): Changed (1/540) 214 to QC_INTERPOLATED because changed corrected temp implies changed speed 08:15:03 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.32 cm/s 08:15:03 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.19 cm/s 08:15:03 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:15:03 21 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (164/540) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:15:03 21 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (164/540) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:15:03 21 Feb 2017 UTC: INFO: QC.py(180): Changed (13/540) 1:6 236:240 539 540 to QC_BAD because changed salinity implies changed optode oxygen 08:15:03 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:15:03 21 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:15:03 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 08:15:03 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 234: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.41% reduction 08:15:03 21 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.234 08:15:03 21 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:15:03 21 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:15:03 21 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:15:03 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 08:15:03 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 08:16:52 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 08:16:52 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 08:16:52 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 08:17:12 21 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:17:12 21 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:17:12 21 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:17:12 21 Feb 2017 UTC /home/sg626/p6260234.log /home/sg626/p6260234.eng /home/sg626/p6260234.asc /home/sg626/p6260234.pro /home/sg626/p6260234.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 08:17:12 21 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:17:12 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:17:12 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:17:12 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:17:12 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:17:12 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:17:12 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:17:12 21 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:17:12 21 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:17:12 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:17:12 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:17:12 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:17:12 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:17:12 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:17:12 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:17:12 21 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:17:12 21 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:17:12 21 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:17:12 21 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:17:12 21 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:17:12 21 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:17:12 21 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:17:12 21 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:17:12 21 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 08:17:12 21 Feb 2017 UTC 11:17:34 21 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 11850 11:17:34 21 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 11:20:17 21 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 12055 11:20:17 21 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:20:17 21 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 11:20:17 21 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 11:20:17 21 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:20:17 21 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170221012017 ] 11:20:17 21 Feb 2017 UTC: INFO: Base.py(1333): PID:12062 11:20:17 21 Feb 2017 UTC: INFO: Base.py(1375): Started processing 11:20:17 21 Feb 2017 UTC 11:20:17 21 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 11:20:18 21 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 11:20:18 21 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:20:18 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:20:18 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:235 calls_made:1 call_cycle:0 11:20:18 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:20:18 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:235 calls_made:1 call_cycle:0 11:20:18 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:20:18 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:235 calls_made:1 call_cycle:0 11:20:18 21 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:235 calls_made:1 call_cycle:0 2321.7500 -15629.8720 02/21/17 11:15:31 UTC) to sdrifter@soest.hawaii.edu 11:20:18 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:235 calls_made:1 call_cycle:0 11:20:18 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:20:18 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:235 calls_made:1 call_cycle:0 11:20:18 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:20:18 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:235 calls_made:1 call_cycle:0 11:20:18 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:20:18 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:235 calls_made:1 call_cycle:0 11:20:18 21 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:20:18 21 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:20:22 21 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:20:23 21 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:20:23 21 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 11:20:23 21 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:20:23 21 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:20:23 21 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 11:20:24 21 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0235lz 11:20:24 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0235lz.x00 11:20:24 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0235lz.x01 11:20:24 21 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0235lz.r in process_file_group 11:20:24 21 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260235.log 11:20:24 21 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 11:20:24 21 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0235dz 11:20:24 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0235dz.x00 11:20:24 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0235dz.x01 11:20:24 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0235dz.x02 11:20:24 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0235dz.x03 11:20:24 21 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0235dz.r in process_file_group 11:20:24 21 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [235] 11:20:24 21 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [235] 11:20:24 21 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260235) for profiles 11:20:24 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 11:20:25 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/566) 566 to QC_BAD because CT out of water 11:20:25 21 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.039m) 11:20:25 21 Feb 2017 UTC: INFO: QC.py(365): Changed (3/566) 2 226 565 to QC_PROBABLY_BAD because raw temperature spikes 11:20:25 21 Feb 2017 UTC: INFO: QC.py(377): Changed (2/566) 565 566 to QC_BAD because raw salinity below bound 11:20:25 21 Feb 2017 UTC: INFO: QC.py(180): Changed (2/566) 2 226 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 11:20:25 21 Feb 2017 UTC: INFO: QC.py(365): Changed (3/566) 2 226 565 to QC_INTERPOLATED because temperature spikes 11:20:25 21 Feb 2017 UTC: INFO: QC.py(377): Changed (2/566) 565 566 to QC_BAD because salinity below bound 11:20:25 21 Feb 2017 UTC: INFO: QC.py(388): Changed (1/566) 565 to QC_BAD because bad salinity indicates conductivity issues 11:20:25 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/566) 224:228 to QC_BAD because slow apogee CT flow 11:20:25 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/566) 1:6 to QC_BAD because prior to dive start 11:20:25 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/566) 564 to QC_BAD because end of climb 11:20:25 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/566) 1:6 224:228 564:566 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 11:20:25 21 Feb 2017 UTC: INFO: QC.py(180): Changed (14/566) 1:6 224:228 564:566 to QC_BAD because changed corrected salin implies changed speed 11:20:25 21 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 11:20:25 21 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 235 interp_salinity data_points in_between 339 343 % suspect thermal-inertia points 342 11:20:25 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.51 cm/s 11:20:25 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.27 cm/s 11:20:25 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 11:20:25 21 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (158/566) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 11:20:25 21 Feb 2017 UTC: INFO: QC.py(180): Changed (3/566) 2 226 565 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 11:20:25 21 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (158/566) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 11:20:25 21 Feb 2017 UTC: INFO: QC.py(180): Changed (3/566) 2 226 565 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 11:20:25 21 Feb 2017 UTC: INFO: QC.py(180): Changed (14/566) 1:6 224:228 564:566 to QC_BAD because changed salinity implies changed optode oxygen 11:20:25 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 11:20:25 21 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 11:20:25 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 11:20:26 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 235: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.47% reduction 11:20:26 21 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.235 11:20:26 21 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:20:26 21 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:20:26 21 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:20:26 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 11:20:26 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 11:22:14 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 11:22:15 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 11:22:15 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 11:22:35 21 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:22:35 21 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:22:35 21 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:22:35 21 Feb 2017 UTC /home/sg626/p6260235.log /home/sg626/p6260235.eng /home/sg626/p6260235.asc /home/sg626/p6260235.pro /home/sg626/p6260235.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 11:22:35 21 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:22:35 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:22:35 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:22:35 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:22:35 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:22:35 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:22:35 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:22:35 21 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:22:35 21 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:22:35 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:22:35 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:22:35 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:22:35 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:22:35 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:22:35 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:22:35 21 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:22:35 21 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 11:22:35 21 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 11:22:35 21 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 11:22:35 21 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 11:22:35 21 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:22:35 21 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:22:35 21 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:22:35 21 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 11:22:35 21 Feb 2017 UTC 14:24:29 21 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 17019 14:24:29 21 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:27:16 21 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 17141 14:27:16 21 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:27:16 21 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 14:27:16 21 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 14:27:16 21 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:27:16 21 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170221042716 ] 14:27:16 21 Feb 2017 UTC: INFO: Base.py(1333): PID:17149 14:27:16 21 Feb 2017 UTC: INFO: Base.py(1375): Started processing 14:27:16 21 Feb 2017 UTC 14:27:16 21 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 14:27:17 21 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 14:27:17 21 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:27:17 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:27:17 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:236 calls_made:1 call_cycle:0 14:27:17 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:27:17 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:236 calls_made:1 call_cycle:0 14:27:17 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:27:17 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:236 calls_made:1 call_cycle:0 14:27:17 21 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:236 calls_made:1 call_cycle:0 2320.5690 -15630.0790 02/21/17 14:22:25 UTC) to sdrifter@soest.hawaii.edu 14:27:17 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:236 calls_made:1 call_cycle:0 14:27:17 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:27:17 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:236 calls_made:1 call_cycle:0 14:27:17 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:27:17 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:236 calls_made:1 call_cycle:0 14:27:17 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:27:17 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:236 calls_made:1 call_cycle:0 14:27:17 21 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:27:17 21 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:27:22 21 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:27:22 21 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:27:22 21 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 14:27:22 21 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:27:22 21 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:27:22 21 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 14:27:23 21 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0236lz 14:27:23 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0236lz.x00 14:27:23 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0236lz.x01 14:27:23 21 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0236lz.r in process_file_group 14:27:23 21 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260236.log 14:27:23 21 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 14:27:23 21 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0236dz 14:27:23 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0236dz.x00 14:27:23 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0236dz.x01 14:27:23 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0236dz.x02 14:27:23 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0236dz.x03 14:27:23 21 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0236dz.r in process_file_group 14:27:24 21 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [236] 14:27:24 21 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [236] 14:27:24 21 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260236) for profiles 14:27:24 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 14:27:24 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/567) 567 to QC_BAD because CT out of water 14:27:24 21 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.058m) 14:27:24 21 Feb 2017 UTC: INFO: QC.py(365): Changed (3/567) 2 5 230 to QC_PROBABLY_BAD because raw temperature spikes 14:27:24 21 Feb 2017 UTC: INFO: QC.py(408): Changed (2/567) 3 230 to QC_PROBABLY_BAD because raw conductivity spikes 14:27:24 21 Feb 2017 UTC: INFO: QC.py(180): Changed (3/567) 2 5 230 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:27:24 21 Feb 2017 UTC: INFO: QC.py(180): Changed (1/567) 3 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 14:27:24 21 Feb 2017 UTC: INFO: QC.py(180): Changed (1/567) 567 to QC_BAD because changed raw cond implies changed raw salinity 14:27:24 21 Feb 2017 UTC: INFO: QC.py(365): Changed (3/567) 2 5 230 to QC_INTERPOLATED because temperature spikes 14:27:24 21 Feb 2017 UTC: INFO: QC.py(408): Changed (2/567) 3 230 to QC_INTERPOLATED because conductivity spikes 14:27:24 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/567) 228:232 to QC_BAD because slow apogee CT flow 14:27:24 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/567) 1:6 to QC_BAD because prior to dive start 14:27:24 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/567) 565 566 to QC_BAD because end of climb 14:27:24 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/567) 1:6 228:232 565:567 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:27:24 21 Feb 2017 UTC: INFO: QC.py(180): Changed (14/567) 1:6 228:232 565:567 to QC_BAD because changed corrected salin implies changed speed 14:27:24 21 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:27:24 21 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 236 interp_salinity data_points in_between 335 338 % suspect thermal-inertia points 336 337 14:27:24 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.32 cm/s 14:27:24 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.98 cm/s 14:27:24 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:27:24 21 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/567) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:27:24 21 Feb 2017 UTC: INFO: QC.py(180): Changed (2/567) 2 5 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 14:27:24 21 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/567) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 14:27:24 21 Feb 2017 UTC: INFO: QC.py(180): Changed (2/567) 2 5 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 14:27:24 21 Feb 2017 UTC: INFO: QC.py(180): Changed (14/567) 1:6 228:232 565:567 to QC_BAD because changed salinity implies changed optode oxygen 14:27:24 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:27:24 21 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:27:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 14:27:25 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 236: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.47% reduction 14:27:25 21 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.236 14:27:25 21 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:27:25 21 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:27:25 21 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:27:25 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 14:27:25 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 14:29:14 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 14:29:15 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 14:29:15 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 14:29:35 21 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:29:35 21 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:29:35 21 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:29:35 21 Feb 2017 UTC /home/sg626/p6260236.log /home/sg626/p6260236.eng /home/sg626/p6260236.asc /home/sg626/p6260236.pro /home/sg626/p6260236.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 14:29:35 21 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:29:35 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:29:35 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:29:35 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:29:35 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:29:35 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:29:35 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:29:35 21 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:29:35 21 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:29:35 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:29:35 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:29:35 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:29:35 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:29:35 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:29:35 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:29:35 21 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:29:35 21 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:29:35 21 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:29:35 21 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:29:35 21 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:29:35 21 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:29:35 21 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:29:35 21 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:29:35 21 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 14:29:35 21 Feb 2017 UTC 17:32:23 21 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 23960 17:32:23 21 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:35:11 21 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 24129 17:35:11 21 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:35:11 21 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:35:11 21 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:35:11 21 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:35:11 21 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170221073510 ] 17:35:11 21 Feb 2017 UTC: INFO: Base.py(1333): PID:24137 17:35:11 21 Feb 2017 UTC: INFO: Base.py(1375): Started processing 17:35:11 21 Feb 2017 UTC 17:35:11 21 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:35:12 21 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:35:12 21 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:35:12 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:35:12 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:237 calls_made:1 call_cycle:0 17:35:12 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:35:12 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:237 calls_made:1 call_cycle:0 17:35:12 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:35:12 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:237 calls_made:1 call_cycle:0 17:35:12 21 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:237 calls_made:1 call_cycle:0 2319.1560 -15630.2700 02/21/17 17:30:18 UTC) to sdrifter@soest.hawaii.edu 17:35:12 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:237 calls_made:1 call_cycle:0 17:35:12 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:35:12 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:237 calls_made:1 call_cycle:0 17:35:12 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:35:12 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:237 calls_made:1 call_cycle:0 17:35:12 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:35:12 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:237 calls_made:1 call_cycle:0 17:35:12 21 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:35:12 21 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:35:16 21 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:35:16 21 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:35:16 21 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:35:16 21 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:35:17 21 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:35:17 21 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:35:17 21 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0237lz 17:35:17 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0237lz.x00 17:35:17 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0237lz.x01 17:35:17 21 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0237lz.r in process_file_group 17:35:17 21 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260237.log 17:35:17 21 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:35:17 21 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0237dz 17:35:17 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0237dz.x00 17:35:17 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0237dz.x01 17:35:17 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0237dz.x02 17:35:17 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0237dz.x03 17:35:17 21 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0237dz.r in process_file_group 17:35:18 21 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [237] 17:35:18 21 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [237] 17:35:18 21 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260237) for profiles 17:35:18 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:35:18 21 Feb 2017 UTC: INFO: QC.py(365): Changed (1/569) 2 to QC_PROBABLY_BAD because raw temperature spikes 17:35:18 21 Feb 2017 UTC: INFO: QC.py(377): Changed (1/569) 569 to QC_BAD because raw salinity below bound 17:35:18 21 Feb 2017 UTC: INFO: QC.py(388): Changed (1/569) 569 to QC_BAD because bad raw salinity indicates raw conductivity issues 17:35:18 21 Feb 2017 UTC: INFO: QC.py(180): Changed (1/569) 2 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:35:18 21 Feb 2017 UTC: INFO: QC.py(365): Changed (1/569) 2 to QC_INTERPOLATED because temperature spikes 17:35:18 21 Feb 2017 UTC: INFO: QC.py(377): Changed (1/569) 569 to QC_BAD because salinity below bound 17:35:18 21 Feb 2017 UTC: INFO: QC.py(388): Changed (1/569) 569 to QC_BAD because bad salinity indicates conductivity issues 17:35:18 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/569) 224:228 to QC_BAD because slow apogee CT flow 17:35:18 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/569) 1:6 to QC_BAD because prior to dive start 17:35:18 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/569) 568 to QC_BAD because end of climb 17:35:18 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3343): SUGGESTION: 237 interp_conductivity data_points between 127 133 % 37.4m SUSPECT unresolved strong conductivity anomaly 17:35:18 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/569) 1:6 224:228 568 569 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:35:18 21 Feb 2017 UTC: INFO: QC.py(180): Changed (13/569) 1:6 224:228 568 569 to QC_BAD because changed corrected salin implies changed speed 17:35:19 21 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:35:19 21 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 237 interp_salinity data_points in_between 307 328 % suspect thermal-inertia points 314 315 17:35:19 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.80 cm/s 17:35:19 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.19 cm/s 17:35:19 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:35:19 21 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/569) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:35:19 21 Feb 2017 UTC: INFO: QC.py(180): Changed (1/569) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:35:19 21 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/569) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:35:19 21 Feb 2017 UTC: INFO: QC.py(180): Changed (1/569) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:35:19 21 Feb 2017 UTC: INFO: QC.py(180): Changed (13/569) 1:6 224:228 568 569 to QC_BAD because changed salinity implies changed optode oxygen 17:35:19 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:35:19 21 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:35:19 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:35:19 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 237: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.28% reduction 17:35:19 21 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.237 17:35:19 21 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:35:19 21 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:35:19 21 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:35:19 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:35:19 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:37:09 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 17:37:10 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:37:10 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:37:30 21 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:37:30 21 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:37:30 21 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:37:30 21 Feb 2017 UTC /home/sg626/p6260237.log /home/sg626/p6260237.eng /home/sg626/p6260237.asc /home/sg626/p6260237.pro /home/sg626/p6260237.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:37:30 21 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:37:30 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:37:30 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:37:30 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:37:30 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:37:30 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:37:30 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:37:30 21 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:37:30 21 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:37:30 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:37:30 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:37:30 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:37:30 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:37:30 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:37:30 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:37:30 21 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:37:30 21 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:37:30 21 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:37:30 21 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:37:30 21 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:37:30 21 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:37:30 21 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:37:30 21 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:37:30 21 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 17:37:30 21 Feb 2017 UTC 20:38:41 21 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 30400 20:38:41 21 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:41:16 21 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 30750 20:41:16 21 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:41:16 21 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:41:16 21 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:41:16 21 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:41:16 21 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170221104115 ] 20:41:16 21 Feb 2017 UTC: INFO: Base.py(1333): PID:30758 20:41:16 21 Feb 2017 UTC: INFO: Base.py(1375): Started processing 20:41:16 21 Feb 2017 UTC 20:41:16 21 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:41:17 21 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:41:17 21 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:41:17 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:41:17 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:238 calls_made:1 call_cycle:0 20:41:17 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:41:17 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:238 calls_made:1 call_cycle:0 20:41:17 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:41:17 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:238 calls_made:1 call_cycle:0 20:41:17 21 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:238 calls_made:1 call_cycle:0 2317.7380 -15630.5310 02/21/17 20:36:22 UTC) to sdrifter@soest.hawaii.edu 20:41:17 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:238 calls_made:1 call_cycle:0 20:41:17 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:41:17 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:238 calls_made:1 call_cycle:0 20:41:17 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:41:17 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:238 calls_made:1 call_cycle:0 20:41:17 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:41:17 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:238 calls_made:1 call_cycle:0 20:41:17 21 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:41:17 21 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:41:21 21 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:41:22 21 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:41:22 21 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:41:22 21 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:41:22 21 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:41:22 21 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:41:23 21 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0238lz 20:41:23 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0238lz.x00 20:41:23 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0238lz.x01 20:41:23 21 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0238lz.r in process_file_group 20:41:23 21 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260238.log 20:41:23 21 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:41:23 21 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0238dz 20:41:23 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0238dz.x00 20:41:23 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0238dz.x01 20:41:23 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0238dz.x02 20:41:23 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0238dz.x03 20:41:23 21 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0238dz.r in process_file_group 20:41:23 21 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [238] 20:41:23 21 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [238] 20:41:23 21 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260238) for profiles 20:41:23 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 20:41:23 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/552) 551 552 to QC_BAD because CT out of water 20:41:23 21 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.083m) 20:41:23 21 Feb 2017 UTC: INFO: QC.py(365): Changed (3/552) 2 3 226 to QC_PROBABLY_BAD because raw temperature spikes 20:41:23 21 Feb 2017 UTC: INFO: QC.py(377): Changed (1/552) 552 to QC_BAD because raw salinity below bound 20:41:23 21 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <197 pt uncorrectable 978.1m SUSPECT weak conductivity anomaly n:-0.27 p:0.26> 20:41:23 21 Feb 2017 UTC: INFO: QC.py(180): Changed (3/552) 2 3 226 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 20:41:23 21 Feb 2017 UTC: INFO: QC.py(180): Changed (1/552) 551 to QC_BAD because changed raw cond implies changed raw salinity 20:41:23 21 Feb 2017 UTC: INFO: QC.py(365): Changed (3/552) 2 3 226 to QC_INTERPOLATED because temperature spikes 20:41:23 21 Feb 2017 UTC: INFO: QC.py(377): Changed (1/552) 552 to QC_BAD because salinity below bound 20:41:23 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/552) 224:228 to QC_BAD because slow apogee CT flow 20:41:23 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/552) 1:6 to QC_BAD because prior to dive start 20:41:23 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/552) 550 to QC_BAD because end of climb 20:41:23 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/552) 1:6 224:228 550:552 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 20:41:23 21 Feb 2017 UTC: INFO: QC.py(180): Changed (14/552) 1:6 224:228 550:552 to QC_BAD because changed corrected salin implies changed speed 20:41:24 21 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 20:41:24 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.63 cm/s 20:41:24 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.21 cm/s 20:41:24 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 20:41:24 21 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/552) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 20:41:24 21 Feb 2017 UTC: INFO: QC.py(180): Changed (3/552) 2 3 226 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 20:41:24 21 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/552) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 20:41:24 21 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/552) 549 to QC_BAD because bad aa4330 oyxgen 20:41:24 21 Feb 2017 UTC: INFO: QC.py(180): Changed (3/552) 2 3 226 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 20:41:24 21 Feb 2017 UTC: INFO: QC.py(180): Changed (14/552) 1:6 224:228 550:552 to QC_BAD because changed salinity implies changed optode oxygen 20:41:24 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 20:41:24 21 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 20:41:24 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 20:41:24 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 238: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.54% reduction 20:41:24 21 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.238 20:41:24 21 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:41:24 21 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:41:24 21 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:41:24 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 20:41:24 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 20:43:15 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 20:43:16 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 20:43:16 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 20:43:36 21 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:43:36 21 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:43:36 21 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:43:36 21 Feb 2017 UTC /home/sg626/p6260238.log /home/sg626/p6260238.eng /home/sg626/p6260238.asc /home/sg626/p6260238.pro /home/sg626/p6260238.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 20:43:36 21 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:43:36 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:43:36 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:43:36 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:43:36 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:43:36 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:43:36 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:43:36 21 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:43:36 21 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:43:36 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:43:36 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:43:36 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:43:36 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:43:36 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:43:36 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:43:36 21 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:43:36 21 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:43:36 21 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:43:36 21 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:43:36 21 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:43:36 21 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:43:36 21 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:43:36 21 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:43:36 21 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 20:43:36 21 Feb 2017 UTC 23:46:04 21 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 4165 23:46:04 21 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 23:48:51 21 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 4288 23:48:51 21 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:48:51 21 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:48:51 21 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:48:51 21 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:48:51 21 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170221134850 ] 23:48:51 21 Feb 2017 UTC: INFO: Base.py(1333): PID:4296 23:48:51 21 Feb 2017 UTC: INFO: Base.py(1375): Started processing 23:48:51 21 Feb 2017 UTC 23:48:51 21 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:48:52 21 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:48:52 21 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:48:52 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:48:52 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:239 calls_made:1 call_cycle:0 23:48:52 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:48:52 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:239 calls_made:1 call_cycle:0 23:48:52 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:48:52 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:239 calls_made:1 call_cycle:0 23:48:52 21 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:239 calls_made:1 call_cycle:0 2316.2660 -15631.0350 02/21/17 23:44:00 UTC) to sdrifter@soest.hawaii.edu 23:48:52 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:239 calls_made:1 call_cycle:0 23:48:52 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:48:52 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:239 calls_made:1 call_cycle:0 23:48:52 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:48:52 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:239 calls_made:1 call_cycle:0 23:48:52 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:48:52 21 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:239 calls_made:1 call_cycle:0 23:48:52 21 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:48:52 21 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:48:56 21 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:48:57 21 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:48:57 21 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:48:57 21 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:48:57 21 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:48:57 21 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:48:58 21 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0239lz 23:48:58 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0239lz.x00 23:48:58 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0239lz.x01 23:48:58 21 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0239lz.r in process_file_group 23:48:58 21 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260239.log 23:48:58 21 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:48:58 21 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0239dz 23:48:58 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0239dz.x00 23:48:58 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0239dz.x01 23:48:58 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0239dz.x02 23:48:58 21 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0239dz.x03 23:48:58 21 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0239dz.r in process_file_group 23:48:58 21 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [239] 23:48:58 21 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [239] 23:48:58 21 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260239) for profiles 23:48:58 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 23:48:59 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/562) 220:224 to QC_BAD because slow apogee CT flow 23:48:59 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/562) 1:6 to QC_BAD because prior to dive start 23:48:59 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/562) 1:6 220:224 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 23:48:59 21 Feb 2017 UTC: INFO: QC.py(180): Changed (11/562) 1:6 220:224 to QC_BAD because changed corrected salin implies changed speed 23:48:59 21 Feb 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 1 1 stalled points 562 23:48:59 21 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 3 iterations 23:48:59 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.70 cm/s 23:48:59 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.13 cm/s 23:48:59 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 23:48:59 21 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/562) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 23:48:59 21 Feb 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/562) 562 to QC_BAD because slow flow in SBE43 23:48:59 21 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/562) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 23:48:59 21 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (5/562) 3 557:559 561 to QC_BAD because bad aa4330 oyxgen 23:48:59 21 Feb 2017 UTC: INFO: QC.py(180): Changed (10/562) 1 2 4:6 220:224 to QC_BAD because changed salinity implies changed optode oxygen 23:48:59 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 23:48:59 21 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 23:48:59 21 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 23:49:00 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 239: Data set size for profile, binned and kkyy files reduced by 11 points, a 1.96% reduction 23:49:00 21 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.239 23:49:00 21 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:49:00 21 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:49:00 21 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:49:00 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 23:49:00 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 23:50:50 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 23:50:51 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 23:50:51 21 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 23:51:11 21 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:51:11 21 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:51:11 21 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:51:11 21 Feb 2017 UTC /home/sg626/p6260239.log /home/sg626/p6260239.eng /home/sg626/p6260239.asc /home/sg626/p6260239.pro /home/sg626/p6260239.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 23:51:11 21 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:51:11 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:51:11 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:51:11 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:51:11 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:51:11 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:51:11 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:51:11 21 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:51:11 21 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:51:11 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:51:11 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:51:11 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:51:11 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:51:11 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:51:11 21 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:51:11 21 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:51:11 21 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:51:11 21 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:51:11 21 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:51:11 21 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:51:11 21 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:51:11 21 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:51:11 21 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:51:11 21 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 23:51:11 21 Feb 2017 UTC 02:51:37 22 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 9559 02:51:37 22 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:54:27 22 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 9682 02:54:27 22 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:54:27 22 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:54:27 22 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:54:27 22 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:54:27 22 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170221165426 ] 02:54:27 22 Feb 2017 UTC: INFO: Base.py(1333): PID:9689 02:54:27 22 Feb 2017 UTC: INFO: Base.py(1375): Started processing 02:54:27 22 Feb 2017 UTC 02:54:27 22 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:54:28 22 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:54:28 22 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:54:28 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:54:28 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:240 calls_made:1 call_cycle:0 02:54:28 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:54:28 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:240 calls_made:1 call_cycle:0 02:54:28 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:54:28 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:240 calls_made:1 call_cycle:0 02:54:28 22 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:240 calls_made:1 call_cycle:0 2315.4130 -15631.4700 02/22/17 02:49:21 UTC) to sdrifter@soest.hawaii.edu 02:54:28 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:240 calls_made:1 call_cycle:0 02:54:28 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:54:28 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:240 calls_made:1 call_cycle:0 02:54:28 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:54:28 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:240 calls_made:1 call_cycle:0 02:54:28 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:54:28 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:240 calls_made:1 call_cycle:0 02:54:28 22 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:54:28 22 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:54:32 22 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:54:33 22 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:54:33 22 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:54:33 22 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:54:33 22 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:54:33 22 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:54:34 22 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0240lz 02:54:34 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0240lz.x00 02:54:34 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0240lz.x01 02:54:34 22 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0240lz.r in process_file_group 02:54:34 22 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260240.log 02:54:34 22 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 02:54:34 22 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0240dz 02:54:34 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0240dz.x00 02:54:34 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0240dz.x01 02:54:34 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0240dz.x02 02:54:34 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0240dz.x03 02:54:34 22 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0240dz.r in process_file_group 02:54:34 22 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [240] 02:54:34 22 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [240] 02:54:34 22 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260240) for profiles 02:54:34 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 02:54:34 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/550) 221:225 to QC_BAD because slow apogee CT flow 02:54:34 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/550) 1:6 to QC_BAD because prior to dive start 02:54:34 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/550) 1:6 221:225 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:54:34 22 Feb 2017 UTC: INFO: QC.py(180): Changed (11/550) 1:6 221:225 to QC_BAD because changed corrected salin implies changed speed 02:54:35 22 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:54:35 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.42 cm/s 02:54:35 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.50 cm/s 02:54:35 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:54:35 22 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (158/550) 124 125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:54:35 22 Feb 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/550) 550 to QC_BAD because slow flow in SBE43 02:54:35 22 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (158/550) 124 125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 02:54:35 22 Feb 2017 UTC: INFO: QC.py(180): Changed (11/550) 1:6 221:225 to QC_BAD because changed salinity implies changed optode oxygen 02:54:35 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:54:35 22 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:54:35 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 02:54:35 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 240: Data set size for profile, binned and kkyy files reduced by 11 points, a 2.00% reduction 02:54:35 22 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.240 02:54:35 22 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:54:35 22 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:54:35 22 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:54:35 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 02:54:35 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 02:56:26 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 02:56:26 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 02:56:26 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 02:56:47 22 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:56:47 22 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:56:47 22 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:56:47 22 Feb 2017 UTC /home/sg626/p6260240.log /home/sg626/p6260240.eng /home/sg626/p6260240.asc /home/sg626/p6260240.pro /home/sg626/p6260240.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 02:56:47 22 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:56:47 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:56:47 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:56:47 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:56:47 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:56:47 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:56:47 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:56:47 22 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:56:47 22 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:56:47 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:56:47 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:56:47 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:56:47 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:56:47 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:56:47 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:56:47 22 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:56:47 22 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:56:47 22 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:56:47 22 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:56:47 22 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:56:47 22 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:56:47 22 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:56:47 22 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:56:47 22 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 02:56:47 22 Feb 2017 UTC 05:59:02 22 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 14487 05:59:02 22 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {P} 06:05:50 22 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 14996 06:05:50 22 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:05:50 22 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 06:05:50 22 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 06:05:50 22 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:05:50 22 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170221200549 ] 06:05:50 22 Feb 2017 UTC: INFO: Base.py(1333): PID:15004 06:05:50 22 Feb 2017 UTC: INFO: Base.py(1375): Started processing 06:05:50 22 Feb 2017 UTC 06:05:50 22 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 06:05:50 22 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 06:05:50 22 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:05:50 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:05:50 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:241 calls_made:1 call_cycle:0 06:05:50 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:05:50 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:241 calls_made:1 call_cycle:0 06:05:50 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:05:50 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:241 calls_made:1 call_cycle:0 06:05:50 22 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:241 calls_made:1 call_cycle:0 2314.3830 -15631.9470 02/22/17 05:57:00 UTC) to sdrifter@soest.hawaii.edu 06:05:51 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:241 calls_made:1 call_cycle:0 06:05:51 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:05:51 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:241 calls_made:1 call_cycle:0 06:05:51 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:05:51 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:241 calls_made:1 call_cycle:0 06:05:51 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:05:51 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:241 calls_made:1 call_cycle:0 06:05:51 22 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:05:51 22 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:05:55 22 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:05:55 22 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:05:55 22 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 06:05:55 22 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:05:55 22 Feb 2017 UTC: INFO: Base.py(743): Processing ./sg0241pz.000 06:05:55 22 Feb 2017 UTC: INFO: Base.py(1593): Processed pdos logfile(s) ['sg0241pz.000'] 06:05:55 22 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 06:05:56 22 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 06:05:56 22 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0225kz 06:05:56 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x00 06:05:56 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x01 06:05:56 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x02 06:05:56 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x03 06:05:56 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x04 06:05:56 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x05 06:05:56 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x06 06:05:56 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x07 06:05:56 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x08 06:05:56 22 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0225kz.r in process_file_group 06:05:56 22 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0241lz 06:05:56 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0241lz.x00 06:05:56 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0241lz.x01 06:05:56 22 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0241lz.r in process_file_group 06:05:56 22 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260241.log 06:05:56 22 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 06:05:56 22 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0241dz 06:05:56 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0241dz.x00 06:05:56 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0241dz.x01 06:05:56 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0241dz.x02 06:05:56 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0241dz.x03 06:05:56 22 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0241dz.r in process_file_group 06:05:57 22 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [225, 241] 06:05:57 22 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [241] 06:05:57 22 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260241) for profiles 06:05:57 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 06:05:57 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/560) 559 560 to QC_BAD because CT out of water 06:05:57 22 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.024m) 06:05:57 22 Feb 2017 UTC: INFO: QC.py(365): Changed (1/560) 558 to QC_PROBABLY_BAD because raw temperature spikes 06:05:57 22 Feb 2017 UTC: INFO: QC.py(377): Changed (1/560) 558 to QC_BAD because raw salinity below bound 06:05:57 22 Feb 2017 UTC: INFO: QC.py(180): Changed (2/560) 559 560 to QC_BAD because changed raw cond implies changed raw salinity 06:05:57 22 Feb 2017 UTC: INFO: QC.py(365): Changed (1/560) 558 to QC_INTERPOLATED because temperature spikes 06:05:57 22 Feb 2017 UTC: INFO: QC.py(377): Changed (1/560) 558 to QC_BAD because salinity below bound 06:05:57 22 Feb 2017 UTC: INFO: QC.py(388): Changed (1/560) 558 to QC_BAD because bad salinity indicates conductivity issues 06:05:57 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/560) 224:229 to QC_BAD because slow apogee CT flow 06:05:57 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/560) 1:6 to QC_BAD because prior to dive start 06:05:57 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/560) 1:6 224:229 558:560 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 06:05:57 22 Feb 2017 UTC: INFO: QC.py(180): Changed (15/560) 1:6 224:229 558:560 to QC_BAD because changed corrected salin implies changed speed 06:05:58 22 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 06:05:58 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.04 cm/s 06:05:58 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.48 cm/s 06:05:58 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 06:05:58 22 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (159/560) 124 125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 06:05:58 22 Feb 2017 UTC: INFO: QC.py(180): Changed (1/560) 558 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 06:05:58 22 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (159/560) 124 125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 06:05:58 22 Feb 2017 UTC: INFO: QC.py(180): Changed (1/560) 558 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 06:05:58 22 Feb 2017 UTC: INFO: QC.py(180): Changed (15/560) 1:6 224:229 558:560 to QC_BAD because changed salinity implies changed optode oxygen 06:05:58 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 06:05:58 22 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 06:05:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 06:05:58 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 241: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.68% reduction 06:05:58 22 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.241 06:05:58 22 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./pdoscmds.bat to ./pdoscmds.bat.241 06:05:58 22 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:05:58 22 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:05:58 22 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:05:58 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 06:05:58 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 06:07:50 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 06:07:51 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 06:07:51 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 06:08:11 22 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:08:11 22 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:08:11 22 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 06:08:11 22 Feb 2017 UTC /home/sg626/p6260241.log /home/sg626/p6260241.eng /home/sg626/p6260225.cap /home/sg626/p6260241.asc /home/sg626/p6260241.pro /home/sg626/p6260241.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 06:08:11 22 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:08:11 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:08:11 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:08:11 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:08:11 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:08:11 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:08:11 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:08:11 22 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:08:11 22 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:08:11 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:08:11 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:08:11 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:08:11 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:08:11 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:08:11 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:08:11 22 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:08:11 22 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 06:08:11 22 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 06:08:11 22 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 06:08:11 22 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 06:08:11 22 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:08:11 22 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:08:11 22 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:08:11 22 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 06:08:11 22 Feb 2017 UTC 09:10:04 22 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 20255 09:10:04 22 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {P} 09:16:40 22 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 20440 09:16:40 22 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:16:40 22 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:16:40 22 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:16:40 22 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:16:40 22 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170221231639 ] 09:16:40 22 Feb 2017 UTC: INFO: Base.py(1333): PID:20448 09:16:40 22 Feb 2017 UTC: INFO: Base.py(1375): Started processing 09:16:40 22 Feb 2017 UTC 09:16:40 22 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:16:41 22 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:16:41 22 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:16:41 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:16:41 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:242 calls_made:1 call_cycle:0 09:16:41 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:16:41 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:242 calls_made:1 call_cycle:0 09:16:41 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:16:41 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:242 calls_made:1 call_cycle:0 09:16:41 22 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:242 calls_made:1 call_cycle:0 2313.1460 -15632.3560 02/22/17 09:08:00 UTC) to sdrifter@soest.hawaii.edu 09:16:41 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:242 calls_made:1 call_cycle:0 09:16:41 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:16:41 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:242 calls_made:1 call_cycle:0 09:16:41 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:16:41 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:242 calls_made:1 call_cycle:0 09:16:41 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:16:41 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:242 calls_made:1 call_cycle:0 09:16:41 22 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:16:41 22 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:16:45 22 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:16:46 22 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:16:46 22 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:16:46 22 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:16:46 22 Feb 2017 UTC: INFO: Base.py(743): Processing ./sg0242pz.000 09:16:46 22 Feb 2017 UTC: INFO: Base.py(1593): Processed pdos logfile(s) ['sg0242pz.000'] 09:16:46 22 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:16:47 22 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:16:47 22 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0225kz 09:16:47 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x00 09:16:47 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x01 09:16:47 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x02 09:16:47 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x03 09:16:47 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x04 09:16:47 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x05 09:16:47 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x06 09:16:47 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x07 09:16:47 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x08 09:16:47 22 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0225kz.r in process_file_group 09:16:47 22 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0242lz 09:16:47 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0242lz.x00 09:16:47 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0242lz.x01 09:16:47 22 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0242lz.r in process_file_group 09:16:47 22 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260242.log 09:16:47 22 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:16:47 22 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0242dz 09:16:47 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0242dz.x00 09:16:47 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0242dz.x01 09:16:47 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0242dz.x02 09:16:47 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0242dz.x03 09:16:47 22 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0242dz.r in process_file_group 09:16:47 22 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [225, 242] 09:16:47 22 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [242] 09:16:47 22 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260242) for profiles 09:16:47 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 09:16:48 22 Feb 2017 UTC: INFO: QC.py(365): Changed (2/556) 3 229 to QC_PROBABLY_BAD because raw temperature spikes 09:16:48 22 Feb 2017 UTC: INFO: QC.py(377): Changed (1/556) 556 to QC_BAD because raw salinity below bound 09:16:48 22 Feb 2017 UTC: INFO: QC.py(388): Changed (1/556) 556 to QC_BAD because bad raw salinity indicates raw conductivity issues 09:16:48 22 Feb 2017 UTC: INFO: QC.py(180): Changed (2/556) 3 229 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 09:16:48 22 Feb 2017 UTC: INFO: QC.py(365): Changed (2/556) 3 229 to QC_INTERPOLATED because temperature spikes 09:16:48 22 Feb 2017 UTC: INFO: QC.py(377): Changed (1/556) 556 to QC_BAD because salinity below bound 09:16:48 22 Feb 2017 UTC: INFO: QC.py(388): Changed (1/556) 556 to QC_BAD because bad salinity indicates conductivity issues 09:16:48 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/556) 227:231 to QC_BAD because slow apogee CT flow 09:16:48 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/556) 1:6 to QC_BAD because prior to dive start 09:16:48 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/556) 1:6 227:231 556 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:16:48 22 Feb 2017 UTC: INFO: QC.py(180): Changed (12/556) 1:6 227:231 556 to QC_BAD because changed corrected salin implies changed speed 09:16:48 22 Feb 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 555 09:16:48 22 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:16:48 22 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 242 interp_salinity data_points in_between 341 350 % suspect thermal-inertia points 09:16:48 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.32 cm/s 09:16:48 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.19 cm/s 09:16:48 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:16:48 22 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (163/556) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:16:48 22 Feb 2017 UTC: INFO: QC.py(180): Changed (1/556) 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:16:48 22 Feb 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/556) 555 to QC_BAD because slow flow in SBE43 09:16:48 22 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (163/556) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 09:16:48 22 Feb 2017 UTC: INFO: QC.py(180): Changed (1/556) 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:16:48 22 Feb 2017 UTC: INFO: QC.py(180): Changed (12/556) 1:6 227:231 556 to QC_BAD because changed salinity implies changed optode oxygen 09:16:48 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:16:48 22 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:16:48 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 09:16:49 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 242: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.16% reduction 09:16:49 22 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.242 09:16:49 22 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./pdoscmds.bat to ./pdoscmds.bat.242 09:16:49 22 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:16:49 22 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:16:49 22 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:16:49 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 09:16:49 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 09:18:42 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 09:18:42 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 09:18:42 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 09:19:03 22 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:19:03 22 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:19:03 22 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:19:03 22 Feb 2017 UTC /home/sg626/p6260242.log /home/sg626/p6260242.eng /home/sg626/p6260225.cap /home/sg626/p6260242.asc /home/sg626/p6260242.pro /home/sg626/p6260242.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 09:19:03 22 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:19:03 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:19:03 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:19:03 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:19:03 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:19:03 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:19:03 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:19:03 22 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:19:03 22 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:19:03 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:19:03 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:19:03 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:19:03 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:19:03 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:19:03 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:19:03 22 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:19:03 22 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:19:03 22 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:19:03 22 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:19:03 22 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:19:03 22 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:19:03 22 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:19:03 22 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:19:03 22 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 09:19:03 22 Feb 2017 UTC 12:20:02 22 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 26149 12:20:02 22 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {P} 12:26:25 22 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 26376 12:26:25 22 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:26:25 22 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:26:25 22 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:26:25 22 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:26:25 22 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170222022624 ] 12:26:25 22 Feb 2017 UTC: INFO: Base.py(1333): PID:26384 12:26:25 22 Feb 2017 UTC: INFO: Base.py(1375): Started processing 12:26:25 22 Feb 2017 UTC 12:26:25 22 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:26:25 22 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:26:25 22 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:26:25 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:26:25 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:243 calls_made:1 call_cycle:0 12:26:25 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:26:25 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:243 calls_made:1 call_cycle:0 12:26:25 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:26:25 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:243 calls_made:1 call_cycle:0 12:26:25 22 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:243 calls_made:1 call_cycle:0 2313.2220 -15632.8660 02/22/17 12:18:00 UTC) to sdrifter@soest.hawaii.edu 12:26:26 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:243 calls_made:1 call_cycle:0 12:26:26 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:26:26 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:243 calls_made:1 call_cycle:0 12:26:26 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:26:26 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:243 calls_made:1 call_cycle:0 12:26:26 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:26:26 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:243 calls_made:1 call_cycle:0 12:26:26 22 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:26:26 22 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:26:30 22 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:26:31 22 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:26:31 22 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:26:31 22 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:26:31 22 Feb 2017 UTC: INFO: Base.py(743): Processing ./sg0243pz.000 12:26:31 22 Feb 2017 UTC: INFO: Base.py(1593): Processed pdos logfile(s) ['sg0243pz.000'] 12:26:31 22 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:26:32 22 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:26:32 22 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0225kz 12:26:32 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x00 12:26:32 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x01 12:26:32 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x02 12:26:32 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x03 12:26:32 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x04 12:26:32 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x05 12:26:32 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x06 12:26:32 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x07 12:26:32 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x08 12:26:32 22 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0225kz.r in process_file_group 12:26:32 22 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0243lz 12:26:32 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0243lz.x00 12:26:32 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0243lz.x01 12:26:32 22 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0243lz.r in process_file_group 12:26:32 22 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260243.log 12:26:32 22 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:26:32 22 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0243dz 12:26:32 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0243dz.x00 12:26:32 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0243dz.x01 12:26:32 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0243dz.x02 12:26:32 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0243dz.x03 12:26:32 22 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0243dz.r in process_file_group 12:26:32 22 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [225, 243] 12:26:32 22 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [243] 12:26:32 22 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260243) for profiles 12:26:32 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 12:26:32 22 Feb 2017 UTC: INFO: QC.py(365): Changed (1/554) 221 to QC_PROBABLY_BAD because raw temperature spikes 12:26:32 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/554) 554 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 12:26:32 22 Feb 2017 UTC: INFO: QC.py(180): Changed (1/554) 221 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 12:26:32 22 Feb 2017 UTC: INFO: QC.py(180): Changed (1/554) 554 to QC_BAD because changed raw cond implies changed raw salinity 12:26:32 22 Feb 2017 UTC: INFO: QC.py(365): Changed (1/554) 221 to QC_INTERPOLATED because temperature spikes 12:26:32 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/554) 554 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 12:26:32 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/554) 219:223 to QC_BAD because slow apogee CT flow 12:26:32 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/554) 1:6 to QC_BAD because prior to dive start 12:26:32 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/554) 1:6 219:223 554 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:26:32 22 Feb 2017 UTC: INFO: QC.py(180): Changed (12/554) 1:6 219:223 554 to QC_BAD because changed corrected salin implies changed speed 12:26:33 22 Feb 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 553 12:26:33 22 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:26:33 22 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 243 interp_salinity data_points in_between 258 327 % suspect thermal-inertia points 12:26:33 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.32 cm/s 12:26:33 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.29 cm/s 12:26:33 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:26:33 22 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/554) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:26:33 22 Feb 2017 UTC: INFO: QC.py(180): Changed (1/554) 221 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 12:26:33 22 Feb 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/554) 553 to QC_BAD because slow flow in SBE43 12:26:33 22 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/554) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 12:26:33 22 Feb 2017 UTC: INFO: QC.py(180): Changed (1/554) 221 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 12:26:33 22 Feb 2017 UTC: INFO: QC.py(180): Changed (12/554) 1:6 219:223 554 to QC_BAD because changed salinity implies changed optode oxygen 12:26:33 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:26:33 22 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:26:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 12:26:33 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 243: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.17% reduction 12:26:33 22 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.243 12:26:33 22 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./pdoscmds.bat to ./pdoscmds.bat.243 12:26:33 22 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:26:33 22 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:26:33 22 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:26:34 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 12:26:34 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 12:28:27 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 12:28:28 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 12:28:28 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 12:28:49 22 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:28:49 22 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:28:49 22 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 12:28:49 22 Feb 2017 UTC /home/sg626/p6260243.log /home/sg626/p6260243.eng /home/sg626/p6260225.cap /home/sg626/p6260243.asc /home/sg626/p6260243.pro /home/sg626/p6260243.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 12:28:49 22 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:28:49 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:28:49 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:28:49 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:28:49 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:28:49 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:28:49 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:28:49 22 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:28:49 22 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:28:49 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:28:49 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:28:49 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:28:49 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:28:49 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:28:49 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:28:49 22 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:28:49 22 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 12:28:49 22 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 12:28:49 22 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 12:28:49 22 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 12:28:49 22 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:28:49 22 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:28:49 22 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:28:49 22 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 12:28:49 22 Feb 2017 UTC 15:33:00 22 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 31631 15:33:00 22 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {P} 15:39:37 22 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 31797 15:39:37 22 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 15:39:37 22 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 15:39:37 22 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 15:39:37 22 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 15:39:37 22 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170222053937 ] 15:39:37 22 Feb 2017 UTC: INFO: Base.py(1333): PID:31805 15:39:37 22 Feb 2017 UTC: INFO: Base.py(1375): Started processing 15:39:37 22 Feb 2017 UTC 15:39:37 22 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 15:39:38 22 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 15:39:38 22 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 15:39:38 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:39:38 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:244 calls_made:1 call_cycle:0 15:39:38 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:39:38 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:244 calls_made:1 call_cycle:0 15:39:38 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:39:38 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:244 calls_made:1 call_cycle:0 15:39:38 22 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:244 calls_made:1 call_cycle:0 2313.5160 -15633.0510 02/22/17 15:31:01 UTC) to sdrifter@soest.hawaii.edu 15:39:38 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:244 calls_made:1 call_cycle:0 15:39:38 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:39:38 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:244 calls_made:1 call_cycle:0 15:39:38 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:39:38 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:244 calls_made:1 call_cycle:0 15:39:38 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:39:38 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:244 calls_made:1 call_cycle:0 15:39:38 22 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:39:38 22 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 15:39:43 22 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 15:39:43 22 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 15:39:43 22 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 15:39:43 22 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 15:39:43 22 Feb 2017 UTC: INFO: Base.py(743): Processing ./sg0244pz.000 15:39:43 22 Feb 2017 UTC: INFO: Base.py(1593): Processed pdos logfile(s) ['sg0244pz.000'] 15:39:43 22 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 15:39:44 22 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 15:39:44 22 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0225kz 15:39:44 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x00 15:39:44 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x01 15:39:44 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x02 15:39:44 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x03 15:39:44 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x04 15:39:44 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x05 15:39:44 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x06 15:39:44 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x07 15:39:44 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x08 15:39:44 22 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0225kz.r in process_file_group 15:39:44 22 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0244lz 15:39:44 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0244lz.x00 15:39:44 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0244lz.x01 15:39:44 22 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0244lz.r in process_file_group 15:39:44 22 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260244.log 15:39:44 22 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 15:39:44 22 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0244dz 15:39:44 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0244dz.x00 15:39:44 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0244dz.x01 15:39:44 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0244dz.x02 15:39:44 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0244dz.x03 15:39:44 22 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0244dz.r in process_file_group 15:39:45 22 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [225, 244] 15:39:45 22 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [244] 15:39:45 22 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260244) for profiles 15:39:45 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 15:39:45 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/565) 563 564 to QC_BAD because CT out of water 15:39:45 22 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.062m) 15:39:45 22 Feb 2017 UTC: INFO: QC.py(365): Changed (3/565) 2 3 564 to QC_PROBABLY_BAD because raw temperature spikes 15:39:45 22 Feb 2017 UTC: INFO: QC.py(377): Changed (1/565) 564 to QC_BAD because raw salinity below bound 15:39:45 22 Feb 2017 UTC: INFO: QC.py(180): Changed (2/565) 2 3 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 15:39:45 22 Feb 2017 UTC: INFO: QC.py(180): Changed (1/565) 563 to QC_BAD because changed raw cond implies changed raw salinity 15:39:45 22 Feb 2017 UTC: INFO: QC.py(365): Changed (3/565) 2 3 564 to QC_INTERPOLATED because temperature spikes 15:39:45 22 Feb 2017 UTC: INFO: QC.py(377): Changed (1/565) 564 to QC_BAD because salinity below bound 15:39:45 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/565) 220:224 to QC_BAD because slow apogee CT flow 15:39:45 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/565) 1:6 to QC_BAD because prior to dive start 15:39:45 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/565) 565 to QC_BAD because end of climb 15:39:45 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/565) 1:6 220:224 563:565 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 15:39:45 22 Feb 2017 UTC: INFO: QC.py(180): Changed (14/565) 1:6 220:224 563:565 to QC_BAD because changed corrected salin implies changed speed 15:39:46 22 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 15:39:46 22 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 244 interp_salinity data_points in_between 330 333 % suspect thermal-inertia points 330 15:39:46 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.24 cm/s 15:39:46 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.46 cm/s 15:39:46 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 15:39:46 22 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (164/565) 118:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 15:39:46 22 Feb 2017 UTC: INFO: QC.py(180): Changed (3/565) 2 3 564 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 15:39:46 22 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (164/565) 118:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 15:39:46 22 Feb 2017 UTC: INFO: QC.py(180): Changed (3/565) 2 3 564 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 15:39:46 22 Feb 2017 UTC: INFO: QC.py(180): Changed (14/565) 1:6 220:224 563:565 to QC_BAD because changed salinity implies changed optode oxygen 15:39:46 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 15:39:46 22 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 15:39:46 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 15:39:46 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 244: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.48% reduction 15:39:46 22 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.244 15:39:46 22 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./pdoscmds.bat to ./pdoscmds.bat.244 15:39:46 22 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 15:39:46 22 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 15:39:46 22 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 15:39:46 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 15:39:46 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 15:41:39 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 15:41:40 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 15:41:40 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 15:42:01 22 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 15:42:01 22 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 15:42:01 22 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 15:42:01 22 Feb 2017 UTC /home/sg626/p6260244.log /home/sg626/p6260244.eng /home/sg626/p6260225.cap /home/sg626/p6260244.asc /home/sg626/p6260244.pro /home/sg626/p6260244.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 15:42:01 22 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 15:42:01 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:42:01 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:42:01 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:42:01 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:42:01 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:42:01 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:42:01 22 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:42:01 22 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 15:42:01 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:42:01 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:42:01 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:42:01 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:42:01 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:42:01 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:42:01 22 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:42:01 22 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 15:42:01 22 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 15:42:01 22 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 15:42:01 22 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 15:42:01 22 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 15:42:01 22 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 15:42:01 22 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 15:42:01 22 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 15:42:01 22 Feb 2017 UTC 18:37:27 22 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 4462 18:37:27 22 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {P} 18:43:50 22 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 4730 18:43:50 22 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:43:50 22 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 18:43:50 22 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 18:43:50 22 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:43:50 22 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170222084349 ] 18:43:50 22 Feb 2017 UTC: INFO: Base.py(1333): PID:4738 18:43:50 22 Feb 2017 UTC: INFO: Base.py(1375): Started processing 18:43:50 22 Feb 2017 UTC 18:43:50 22 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 18:43:51 22 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 18:43:51 22 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:43:51 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:43:51 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:245 calls_made:1 call_cycle:0 18:43:51 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:43:51 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:245 calls_made:1 call_cycle:0 18:43:51 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:43:51 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:245 calls_made:1 call_cycle:0 18:43:51 22 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:245 calls_made:1 call_cycle:0 2312.4450 -15633.7980 02/22/17 18:35:10 UTC) to sdrifter@soest.hawaii.edu 18:43:51 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:245 calls_made:1 call_cycle:0 18:43:51 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:43:51 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:245 calls_made:1 call_cycle:0 18:43:51 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:43:51 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:245 calls_made:1 call_cycle:0 18:43:51 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:43:51 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:245 calls_made:1 call_cycle:0 18:43:51 22 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:43:51 22 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:43:55 22 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:43:56 22 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:43:56 22 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 18:43:56 22 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:43:56 22 Feb 2017 UTC: INFO: Base.py(743): Processing ./sg0245pz.000 18:43:56 22 Feb 2017 UTC: INFO: Base.py(1593): Processed pdos logfile(s) ['sg0245pz.000'] 18:43:56 22 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 18:43:57 22 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 18:43:57 22 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0225kz 18:43:57 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x00 18:43:57 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x01 18:43:57 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x02 18:43:57 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x03 18:43:57 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x04 18:43:57 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x05 18:43:57 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x06 18:43:57 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x07 18:43:57 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x08 18:43:57 22 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0225kz.r in process_file_group 18:43:57 22 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0245lz 18:43:57 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0245lz.x00 18:43:57 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0245lz.x01 18:43:57 22 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0245lz.r in process_file_group 18:43:57 22 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260245.log 18:43:57 22 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 18:43:57 22 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0245dz 18:43:57 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0245dz.x00 18:43:57 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0245dz.x01 18:43:57 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0245dz.x02 18:43:57 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0245dz.x03 18:43:57 22 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0245dz.r in process_file_group 18:43:57 22 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [225, 245] 18:43:57 22 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [245] 18:43:57 22 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260245) for profiles 18:43:57 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 18:43:57 22 Feb 2017 UTC: INFO: QC.py(377): Changed (1/527) 527 to QC_BAD because raw salinity below bound 18:43:57 22 Feb 2017 UTC: INFO: QC.py(388): Changed (1/527) 527 to QC_BAD because bad raw salinity indicates raw conductivity issues 18:43:57 22 Feb 2017 UTC: INFO: QC.py(408): Changed (1/527) 212 to QC_PROBABLY_BAD because raw conductivity spikes 18:43:57 22 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <186 pt uncorrectable 942.2m SUSPECT weak conductivity anomaly n:-0.26 p:0.26> 18:43:57 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/527) 526 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 18:43:57 22 Feb 2017 UTC: INFO: QC.py(180): Changed (1/527) 212 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 18:43:57 22 Feb 2017 UTC: INFO: QC.py(180): Changed (1/527) 526 to QC_BAD because changed raw cond implies changed raw salinity 18:43:57 22 Feb 2017 UTC: INFO: QC.py(377): Changed (1/527) 527 to QC_BAD because salinity below bound 18:43:57 22 Feb 2017 UTC: INFO: QC.py(388): Changed (1/527) 527 to QC_BAD because bad salinity indicates conductivity issues 18:43:57 22 Feb 2017 UTC: INFO: QC.py(408): Changed (1/527) 212 to QC_INTERPOLATED because conductivity spikes 18:43:57 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/527) 526 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 18:43:57 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/527) 210:214 to QC_BAD because slow apogee CT flow 18:43:57 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/527) 1:6 to QC_BAD because prior to dive start 18:43:58 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/527) 1:6 210:214 526 527 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 18:43:58 22 Feb 2017 UTC: INFO: QC.py(180): Changed (13/527) 1:6 210:214 526 527 to QC_BAD because changed corrected salin implies changed speed 18:43:58 22 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 18:43:58 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.56 cm/s 18:43:58 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.68 cm/s 18:43:58 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 18:43:58 22 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (158/527) 113:115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 18:43:58 22 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (158/527) 113:115 117:120 122:125 127:130 132:135 137:140 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 18:43:58 22 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/527) 9 to QC_BAD because bad aa4330 oyxgen 18:43:58 22 Feb 2017 UTC: INFO: QC.py(180): Changed (13/527) 1:6 210:214 526 527 to QC_BAD because changed salinity implies changed optode oxygen 18:43:58 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 18:43:58 22 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 18:43:58 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 18:43:58 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 245: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.47% reduction 18:43:58 22 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.245 18:43:58 22 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./pdoscmds.bat to ./pdoscmds.bat.245 18:43:58 22 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:43:58 22 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:43:58 22 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:43:59 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 18:43:59 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 18:45:53 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 18:45:53 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 18:45:53 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 18:46:14 22 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:46:14 22 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:46:14 22 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:46:14 22 Feb 2017 UTC /home/sg626/p6260245.log /home/sg626/p6260245.eng /home/sg626/p6260225.cap /home/sg626/p6260245.asc /home/sg626/p6260245.pro /home/sg626/p6260245.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 18:46:14 22 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:46:14 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:46:14 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:46:14 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:46:14 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:46:14 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:46:14 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:46:14 22 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:46:14 22 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:46:14 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:46:14 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:46:14 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:46:14 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:46:14 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:46:14 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:46:14 22 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:46:14 22 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 18:46:14 22 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 18:46:14 22 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 18:46:14 22 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 18:46:14 22 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:46:14 22 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:46:14 22 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:46:14 22 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 18:46:14 22 Feb 2017 UTC 21:51:02 22 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 9953 21:51:02 22 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {P} 21:58:24 22 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 10141 21:58:24 22 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:58:24 22 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:58:24 22 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:58:24 22 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:58:24 22 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170222115824 ] 21:58:24 22 Feb 2017 UTC: INFO: Base.py(1333): PID:10148 21:58:24 22 Feb 2017 UTC: INFO: Base.py(1375): Started processing 21:58:24 22 Feb 2017 UTC 21:58:24 22 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:58:25 22 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:58:25 22 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:58:25 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:58:25 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:246 calls_made:1 call_cycle:0 21:58:25 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:58:25 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:246 calls_made:1 call_cycle:0 21:58:25 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:58:25 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:246 calls_made:1 call_cycle:0 21:58:25 22 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:246 calls_made:1 call_cycle:0 2311.2590 -15634.2300 02/22/17 21:49:00 UTC) to sdrifter@soest.hawaii.edu 21:58:25 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:246 calls_made:1 call_cycle:0 21:58:25 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:58:25 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:246 calls_made:1 call_cycle:0 21:58:25 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:58:25 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:246 calls_made:1 call_cycle:0 21:58:25 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:58:25 22 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:246 calls_made:1 call_cycle:0 21:58:25 22 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:58:25 22 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:58:30 22 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:58:30 22 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:58:30 22 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:58:30 22 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:58:30 22 Feb 2017 UTC: INFO: Base.py(743): Processing ./sg0246pz.000 21:58:30 22 Feb 2017 UTC: INFO: Base.py(1593): Processed pdos logfile(s) ['sg0246pz.000'] 21:58:30 22 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:58:31 22 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:58:31 22 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0225kz 21:58:31 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x00 21:58:31 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x01 21:58:31 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x02 21:58:31 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x03 21:58:31 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x04 21:58:31 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x05 21:58:31 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x06 21:58:31 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x07 21:58:31 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x08 21:58:31 22 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0225kz.r in process_file_group 21:58:31 22 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0246lz 21:58:31 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0246lz.x00 21:58:31 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0246lz.x01 21:58:31 22 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0246lz.r in process_file_group 21:58:31 22 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260246.log 21:58:31 22 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:58:32 22 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0246dz 21:58:32 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0246dz.x00 21:58:32 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0246dz.x01 21:58:32 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0246dz.x02 21:58:32 22 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0246dz.x03 21:58:32 22 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0246dz.r in process_file_group 21:58:32 22 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [225, 246] 21:58:32 22 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [246] 21:58:32 22 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260246) for profiles 21:58:32 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:58:32 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/581) 578 580 581 to QC_BAD because CT out of water 21:58:32 22 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.029m) 21:58:32 22 Feb 2017 UTC: INFO: QC.py(365): Changed (3/581) 2 220 578 to QC_PROBABLY_BAD because raw temperature spikes 21:58:32 22 Feb 2017 UTC: INFO: QC.py(377): Changed (2/581) 578 581 to QC_BAD because raw salinity below bound 21:58:32 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/581) 579 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 21:58:32 22 Feb 2017 UTC: INFO: QC.py(180): Changed (2/581) 2 220 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:58:32 22 Feb 2017 UTC: INFO: QC.py(180): Changed (2/581) 579 580 to QC_BAD because changed raw cond implies changed raw salinity 21:58:32 22 Feb 2017 UTC: INFO: QC.py(365): Changed (3/581) 2 220 578 to QC_INTERPOLATED because temperature spikes 21:58:32 22 Feb 2017 UTC: INFO: QC.py(377): Changed (2/581) 578 581 to QC_BAD because salinity below bound 21:58:32 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/581) 579 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 21:58:32 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/581) 218:222 to QC_BAD because slow apogee CT flow 21:58:32 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/581) 1:6 to QC_BAD because prior to dive start 21:58:32 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/581) 1:6 218:222 578:581 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:58:32 22 Feb 2017 UTC: INFO: QC.py(180): Changed (15/581) 1:6 218:222 578:581 to QC_BAD because changed corrected salin implies changed speed 21:58:33 22 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:58:33 22 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 246 interp_salinity data_points in_between 329 344 % suspect thermal-inertia points 336 337 21:58:33 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.45 cm/s 21:58:33 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.44 cm/s 21:58:33 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:58:33 22 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (159/581) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:58:33 22 Feb 2017 UTC: INFO: QC.py(180): Changed (2/581) 2 578 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:58:33 22 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (159/581) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:58:33 22 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/581) 581 to QC_BAD because bad aa4330 oyxgen 21:58:33 22 Feb 2017 UTC: INFO: QC.py(180): Changed (2/581) 2 578 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:58:33 22 Feb 2017 UTC: INFO: QC.py(180): Changed (14/581) 1:6 218:222 578:580 to QC_BAD because changed salinity implies changed optode oxygen 21:58:33 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:58:33 22 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:58:33 22 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:58:33 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 246: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.58% reduction 21:58:33 22 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.246 21:58:33 22 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./pdoscmds.bat to ./pdoscmds.bat.246 21:58:33 22 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:58:33 22 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:58:33 22 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:58:34 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:58:34 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 22:00:28 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 22:00:29 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 22:00:29 22 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 22:00:49 22 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:00:49 22 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:00:49 22 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:00:49 22 Feb 2017 UTC /home/sg626/p6260246.log /home/sg626/p6260246.eng /home/sg626/p6260225.cap /home/sg626/p6260246.asc /home/sg626/p6260246.pro /home/sg626/p6260246.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 22:00:49 22 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:00:49 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:00:49 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:00:49 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:00:49 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:00:49 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:00:49 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:00:49 22 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:00:49 22 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:00:49 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:00:49 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:00:49 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:00:49 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:00:49 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:00:49 22 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:00:49 22 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:00:49 22 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:00:49 22 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:00:49 22 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:00:49 22 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:00:49 22 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:00:49 22 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:00:49 22 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:00:49 22 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 22:00:49 22 Feb 2017 UTC 01:02:59 23 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 15498 01:02:59 23 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {P} 01:09:45 23 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 15674 01:09:45 23 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:09:45 23 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:09:45 23 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:09:45 23 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:09:45 23 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170222150944 ] 01:09:45 23 Feb 2017 UTC: INFO: Base.py(1333): PID:15681 01:09:45 23 Feb 2017 UTC: INFO: Base.py(1375): Started processing 01:09:45 23 Feb 2017 UTC 01:09:45 23 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:09:46 23 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:09:46 23 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:09:46 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:09:46 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:247 calls_made:2 call_cycle:0 01:09:46 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:09:46 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:247 calls_made:2 call_cycle:0 01:09:46 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:09:46 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:247 calls_made:2 call_cycle:0 01:09:46 23 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:247 calls_made:2 call_cycle:0 2310.1510 -15635.0380 02/23/17 00:58:42 UTC) to sdrifter@soest.hawaii.edu 01:09:46 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:247 calls_made:2 call_cycle:0 01:09:46 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:09:46 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:247 calls_made:2 call_cycle:0 01:09:46 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:09:46 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:247 calls_made:2 call_cycle:0 01:09:46 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:09:46 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:247 calls_made:2 call_cycle:0 01:09:46 23 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:09:46 23 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:09:50 23 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:09:51 23 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:09:51 23 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:09:51 23 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:09:51 23 Feb 2017 UTC: INFO: Base.py(743): Processing ./sg0247pz.000 01:09:51 23 Feb 2017 UTC: INFO: Base.py(1593): Processed pdos logfile(s) ['sg0247pz.000'] 01:09:51 23 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:09:52 23 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:09:52 23 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0225kz 01:09:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x00 01:09:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x01 01:09:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x02 01:09:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x03 01:09:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x04 01:09:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x05 01:09:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x06 01:09:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x07 01:09:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x08 01:09:52 23 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0225kz.r in process_file_group 01:09:52 23 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0247lz 01:09:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0247lz.x00 01:09:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0247lz.x01 01:09:52 23 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0247lz.r in process_file_group 01:09:52 23 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260247.log 01:09:52 23 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:09:52 23 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0247dz 01:09:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0247dz.x00 01:09:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0247dz.x01 01:09:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0247dz.x02 01:09:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0247dz.x03 01:09:52 23 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0247dz.r in process_file_group 01:09:52 23 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [225, 247] 01:09:52 23 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [247] 01:09:52 23 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260247) for profiles 01:09:52 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:09:52 23 Feb 2017 UTC: INFO: QC.py(365): Changed (2/535) 3 220 to QC_PROBABLY_BAD because raw temperature spikes 01:09:52 23 Feb 2017 UTC: INFO: QC.py(377): Changed (1/535) 535 to QC_BAD because raw salinity below bound 01:09:52 23 Feb 2017 UTC: INFO: QC.py(388): Changed (1/535) 535 to QC_BAD because bad raw salinity indicates raw conductivity issues 01:09:52 23 Feb 2017 UTC: INFO: QC.py(408): Changed (1/535) 2 to QC_PROBABLY_BAD because raw conductivity spikes 01:09:52 23 Feb 2017 UTC: INFO: QC.py(180): Changed (2/535) 3 220 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:09:52 23 Feb 2017 UTC: INFO: QC.py(180): Changed (1/535) 2 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 01:09:52 23 Feb 2017 UTC: INFO: QC.py(365): Changed (2/535) 3 220 to QC_INTERPOLATED because temperature spikes 01:09:52 23 Feb 2017 UTC: INFO: QC.py(377): Changed (1/535) 535 to QC_BAD because salinity below bound 01:09:52 23 Feb 2017 UTC: INFO: QC.py(388): Changed (1/535) 535 to QC_BAD because bad salinity indicates conductivity issues 01:09:52 23 Feb 2017 UTC: INFO: QC.py(408): Changed (1/535) 2 to QC_INTERPOLATED because conductivity spikes 01:09:52 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/535) 218:222 to QC_BAD because slow apogee CT flow 01:09:52 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/535) 1:6 to QC_BAD because prior to dive start 01:09:52 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/535) 1:6 218:222 535 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:09:52 23 Feb 2017 UTC: INFO: QC.py(180): Changed (12/535) 1:6 218:222 535 to QC_BAD because changed corrected salin implies changed speed 01:09:53 23 Feb 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 534 01:09:53 23 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:09:53 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.93 cm/s 01:09:53 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.05 cm/s 01:09:53 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:09:53 23 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/535) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:09:53 23 Feb 2017 UTC: INFO: QC.py(180): Changed (1/535) 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 01:09:53 23 Feb 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/535) 534 to QC_BAD because slow flow in SBE43 01:09:53 23 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/535) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 01:09:53 23 Feb 2017 UTC: INFO: QC.py(180): Changed (1/535) 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 01:09:53 23 Feb 2017 UTC: INFO: QC.py(180): Changed (12/535) 1:6 218:222 535 to QC_BAD because changed salinity implies changed optode oxygen 01:09:53 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:09:53 23 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:09:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:09:53 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 247: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.24% reduction 01:09:53 23 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.247 01:09:53 23 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./pdoscmds.bat to ./pdoscmds.bat.247 01:09:53 23 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:09:53 23 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:09:53 23 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:09:54 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:09:54 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 01:11:49 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 01:11:49 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 01:11:49 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 01:12:11 23 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:12:11 23 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:12:11 23 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:12:11 23 Feb 2017 UTC /home/sg626/p6260247.log /home/sg626/p6260247.eng /home/sg626/p6260225.cap /home/sg626/p6260247.asc /home/sg626/p6260247.pro /home/sg626/p6260247.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 01:12:11 23 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:12:11 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:12:11 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:12:11 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:12:11 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:12:11 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:12:11 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:12:11 23 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:12:11 23 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:12:11 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:12:11 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:12:11 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:12:11 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:12:11 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:12:11 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:12:11 23 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:12:11 23 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:12:11 23 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:12:11 23 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:12:11 23 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:12:11 23 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:12:11 23 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:12:11 23 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:12:11 23 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 01:12:11 23 Feb 2017 UTC 04:20:15 23 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 20762 04:20:16 23 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {P} 04:26:45 23 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 20932 04:26:45 23 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:26:45 23 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:26:45 23 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:26:45 23 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:26:45 23 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170222182645 ] 04:26:45 23 Feb 2017 UTC: INFO: Base.py(1333): PID:20939 04:26:45 23 Feb 2017 UTC: INFO: Base.py(1375): Started processing 04:26:45 23 Feb 2017 UTC 04:26:45 23 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:26:46 23 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:26:46 23 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:26:46 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:26:46 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:248 calls_made:2 call_cycle:0 04:26:46 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:26:46 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:248 calls_made:2 call_cycle:0 04:26:46 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:26:46 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:248 calls_made:2 call_cycle:0 04:26:46 23 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:248 calls_made:2 call_cycle:0 2310.4950 -15635.6290 02/23/17 04:16:30 UTC) to sdrifter@soest.hawaii.edu 04:26:46 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:248 calls_made:2 call_cycle:0 04:26:46 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:26:46 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:248 calls_made:2 call_cycle:0 04:26:46 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:26:46 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:248 calls_made:2 call_cycle:0 04:26:46 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:26:46 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:248 calls_made:2 call_cycle:0 04:26:46 23 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:26:46 23 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:26:51 23 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:26:51 23 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:26:51 23 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:26:51 23 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:26:51 23 Feb 2017 UTC: INFO: Base.py(743): Processing ./sg0248pz.000 04:26:51 23 Feb 2017 UTC: INFO: Base.py(1593): Processed pdos logfile(s) ['sg0248pz.000'] 04:26:51 23 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:26:52 23 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:26:52 23 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0225kz 04:26:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x00 04:26:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x01 04:26:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x02 04:26:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x03 04:26:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x04 04:26:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x05 04:26:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x06 04:26:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x07 04:26:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x08 04:26:52 23 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0225kz.r in process_file_group 04:26:52 23 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0248lz 04:26:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0248lz.x00 04:26:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0248lz.x01 04:26:52 23 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0248lz.r in process_file_group 04:26:52 23 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260248.log 04:26:52 23 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:26:52 23 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0248dz 04:26:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0248dz.x00 04:26:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0248dz.x01 04:26:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0248dz.x02 04:26:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0248dz.x03 04:26:52 23 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0248dz.r in process_file_group 04:26:53 23 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [225, 248] 04:26:53 23 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [248] 04:26:53 23 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260248) for profiles 04:26:53 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 04:26:53 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/572) 572 to QC_BAD because CT out of water 04:26:53 23 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.030m) 04:26:53 23 Feb 2017 UTC: INFO: QC.py(365): Changed (2/572) 210 223 to QC_PROBABLY_BAD because raw temperature spikes 04:26:53 23 Feb 2017 UTC: INFO: QC.py(180): Changed (2/572) 210 223 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:26:53 23 Feb 2017 UTC: INFO: QC.py(180): Changed (1/572) 572 to QC_BAD because changed raw cond implies changed raw salinity 04:26:53 23 Feb 2017 UTC: INFO: QC.py(365): Changed (2/572) 210 223 to QC_INTERPOLATED because temperature spikes 04:26:53 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/572) 221:225 to QC_BAD because slow apogee CT flow 04:26:53 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/572) 1:6 to QC_BAD because prior to dive start 04:26:53 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/572) 1:6 221:225 572 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:26:53 23 Feb 2017 UTC: INFO: QC.py(180): Changed (12/572) 1:6 221:225 572 to QC_BAD because changed corrected salin implies changed speed 04:26:54 23 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:26:54 23 Feb 2017 UTC: INFO: QC.py(180): Changed (1/572) 210 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 04:26:54 23 Feb 2017 UTC: INFO: QC.py(180): Changed (1/572) 210 to QC_INTERPOLATED because changed corrected temp implies changed speed 04:26:54 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.02 cm/s 04:26:54 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.28 cm/s 04:26:54 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:26:54 23 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (164/572) 123:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:26:54 23 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (164/572) 123:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 04:26:54 23 Feb 2017 UTC: INFO: QC.py(180): Changed (12/572) 1:6 221:225 572 to QC_BAD because changed salinity implies changed optode oxygen 04:26:54 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:26:54 23 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:26:54 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 04:26:54 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 248: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.10% reduction 04:26:54 23 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.248 04:26:54 23 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./pdoscmds.bat to ./pdoscmds.bat.248 04:26:54 23 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:26:54 23 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:26:54 23 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:26:54 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 04:26:54 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 04:28:50 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 04:28:51 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 04:28:51 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 04:29:12 23 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:29:12 23 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:29:12 23 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:29:12 23 Feb 2017 UTC /home/sg626/p6260248.log /home/sg626/p6260248.eng /home/sg626/p6260225.cap /home/sg626/p6260248.asc /home/sg626/p6260248.pro /home/sg626/p6260248.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 04:29:12 23 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:29:12 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:29:12 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:29:12 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:29:12 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:29:12 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:29:12 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:29:12 23 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:29:12 23 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:29:12 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:29:12 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:29:12 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:29:12 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:29:12 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:29:12 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:29:12 23 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:29:12 23 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:29:12 23 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:29:12 23 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:29:12 23 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:29:12 23 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:29:12 23 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:29:12 23 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:29:12 23 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 04:29:12 23 Feb 2017 UTC 07:31:10 23 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 26372 07:31:11 23 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {P} 07:37:44 23 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 26541 07:37:44 23 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:37:44 23 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:37:44 23 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:37:44 23 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:37:44 23 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170222213744 ] 07:37:44 23 Feb 2017 UTC: INFO: Base.py(1333): PID:26549 07:37:44 23 Feb 2017 UTC: INFO: Base.py(1375): Started processing 07:37:44 23 Feb 2017 UTC 07:37:44 23 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:37:45 23 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:37:45 23 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:37:45 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:37:45 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:249 calls_made:1 call_cycle:0 07:37:45 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:37:45 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:249 calls_made:1 call_cycle:0 07:37:45 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:37:45 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:249 calls_made:1 call_cycle:0 07:37:45 23 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:249 calls_made:1 call_cycle:0 2309.4740 -15636.1840 02/23/17 07:29:01 UTC) to sdrifter@soest.hawaii.edu 07:37:45 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:249 calls_made:1 call_cycle:0 07:37:45 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:37:45 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:249 calls_made:1 call_cycle:0 07:37:45 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:37:45 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:249 calls_made:1 call_cycle:0 07:37:45 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:37:45 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:249 calls_made:1 call_cycle:0 07:37:45 23 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:37:45 23 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:37:50 23 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:37:50 23 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:37:50 23 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:37:50 23 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:37:50 23 Feb 2017 UTC: INFO: Base.py(743): Processing ./sg0249pz.000 07:37:50 23 Feb 2017 UTC: INFO: Base.py(1593): Processed pdos logfile(s) ['sg0249pz.000'] 07:37:50 23 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:37:51 23 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:37:51 23 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0225kz 07:37:51 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x00 07:37:51 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x01 07:37:51 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x02 07:37:51 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x03 07:37:51 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x04 07:37:51 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x05 07:37:51 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x06 07:37:51 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x07 07:37:51 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x08 07:37:51 23 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0225kz.r in process_file_group 07:37:51 23 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0249lz 07:37:51 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0249lz.x00 07:37:51 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0249lz.x01 07:37:51 23 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0249lz.r in process_file_group 07:37:51 23 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260249.log 07:37:51 23 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:37:51 23 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0249dz 07:37:51 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0249dz.x00 07:37:51 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0249dz.x01 07:37:51 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0249dz.x02 07:37:51 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0249dz.x03 07:37:51 23 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0249dz.r in process_file_group 07:37:52 23 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [225, 249] 07:37:52 23 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [249] 07:37:52 23 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260249) for profiles 07:37:52 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 07:37:52 23 Feb 2017 UTC: INFO: QC.py(365): Changed (3/550) 2 3 549 to QC_PROBABLY_BAD because raw temperature spikes 07:37:52 23 Feb 2017 UTC: INFO: QC.py(377): Changed (1/550) 550 to QC_BAD because raw salinity below bound 07:37:52 23 Feb 2017 UTC: INFO: QC.py(388): Changed (1/550) 550 to QC_BAD because bad raw salinity indicates raw conductivity issues 07:37:52 23 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <186 pt uncorrectable 934.0m SUSPECT weak conductivity anomaly n:-0.26 p:0.27> 07:37:52 23 Feb 2017 UTC: INFO: QC.py(180): Changed (3/550) 2 3 549 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:37:52 23 Feb 2017 UTC: INFO: QC.py(365): Changed (3/550) 2 3 549 to QC_INTERPOLATED because temperature spikes 07:37:52 23 Feb 2017 UTC: INFO: QC.py(377): Changed (1/550) 550 to QC_BAD because salinity below bound 07:37:52 23 Feb 2017 UTC: INFO: QC.py(388): Changed (1/550) 550 to QC_BAD because bad salinity indicates conductivity issues 07:37:52 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/550) 218:222 to QC_BAD because slow apogee CT flow 07:37:52 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/550) 1:6 to QC_BAD because prior to dive start 07:37:52 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/550) 1:6 218:222 550 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:37:52 23 Feb 2017 UTC: INFO: QC.py(180): Changed (12/550) 1:6 218:222 550 to QC_BAD because changed corrected salin implies changed speed 07:37:52 23 Feb 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 549 07:37:53 23 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:37:53 23 Feb 2017 UTC: INFO: QC.py(180): Changed (1/550) 549 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 07:37:53 23 Feb 2017 UTC: INFO: QC.py(180): Changed (1/550) 549 to QC_INTERPOLATED because changed corrected temp implies changed speed 07:37:53 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.28 cm/s 07:37:53 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.07 cm/s 07:37:53 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:37:53 23 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/550) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:37:53 23 Feb 2017 UTC: INFO: QC.py(180): Changed (3/550) 2 3 549 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:37:53 23 Feb 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/550) 549 to QC_BAD because slow flow in SBE43 07:37:53 23 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/550) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 07:37:53 23 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/550) 5 to QC_BAD because bad aa4330 oyxgen 07:37:53 23 Feb 2017 UTC: INFO: QC.py(180): Changed (3/550) 2 3 549 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:37:53 23 Feb 2017 UTC: INFO: QC.py(180): Changed (11/550) 1:4 6 218:222 550 to QC_BAD because changed salinity implies changed optode oxygen 07:37:53 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:37:53 23 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:37:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 07:37:53 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 249: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.18% reduction 07:37:53 23 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.249 07:37:53 23 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./pdoscmds.bat to ./pdoscmds.bat.249 07:37:53 23 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:37:53 23 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:37:53 23 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:37:53 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 07:37:53 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:39:50 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 07:39:51 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:39:51 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:40:13 23 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:40:13 23 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:40:13 23 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:40:13 23 Feb 2017 UTC /home/sg626/p6260249.log /home/sg626/p6260249.eng /home/sg626/p6260225.cap /home/sg626/p6260249.asc /home/sg626/p6260249.pro /home/sg626/p6260249.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:40:13 23 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:40:13 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:40:13 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:40:13 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:40:13 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:40:13 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:40:13 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:40:13 23 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:40:13 23 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:40:13 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:40:13 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:40:13 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:40:13 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:40:13 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:40:13 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:40:13 23 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:40:13 23 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:40:13 23 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:40:13 23 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:40:13 23 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:40:13 23 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:40:13 23 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:40:13 23 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:40:13 23 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 07:40:13 23 Feb 2017 UTC 10:40:23 23 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 32337 10:40:23 23 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {P} 10:41:59 23 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 32430 10:41:59 23 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:41:59 23 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:41:59 23 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:41:59 23 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:41:59 23 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170223004159 ] 10:41:59 23 Feb 2017 UTC: INFO: Base.py(1333): PID:32437 10:42:00 23 Feb 2017 UTC: INFO: Base.py(1375): Started processing 10:42:00 23 Feb 2017 UTC 10:42:00 23 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:42:00 23 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:42:00 23 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:42:00 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:42:00 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:250 calls_made:1 call_cycle:0 10:42:00 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:42:00 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:250 calls_made:1 call_cycle:0 10:42:00 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:42:00 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:250 calls_made:1 call_cycle:0 10:42:00 23 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:250 calls_made:1 call_cycle:0 2308.3120 -15636.7970 02/23/17 10:38:18 UTC) to sdrifter@soest.hawaii.edu 10:42:00 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:250 calls_made:1 call_cycle:0 10:42:00 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:42:00 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:250 calls_made:1 call_cycle:0 10:42:00 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:42:00 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:250 calls_made:1 call_cycle:0 10:42:00 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:42:00 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:250 calls_made:1 call_cycle:0 10:42:00 23 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:42:00 23 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:42:05 23 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:42:06 23 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:42:06 23 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:42:06 23 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:42:06 23 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:42:06 23 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:42:07 23 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0250lz 10:42:07 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0250lz.x00 10:42:07 23 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0250lz.r in process_file_group 10:42:07 23 Feb 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0250lz.r - expected 0x3406077023, generated 0x3da2be2f 10:42:07 23 Feb 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0250lz.r - expected 0xb127a3c9, generated 0x313d 10:42:07 23 Feb 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0250lz.r - skipping 10:42:07 23 Feb 2017 UTC: ERROR: Base.py(243): Could not process sg0250lz - skipping 10:42:07 23 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:42:07 23 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0250lz 10:42:07 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0250lz.x00 10:42:07 23 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0250lz.r in process_file_group 10:42:07 23 Feb 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0250lz.r - expected 0x3406077023, generated 0x3da2be2f 10:42:07 23 Feb 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0250lz.r - expected 0xb127a3c9, generated 0x313d 10:42:07 23 Feb 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0250lz.r - skipping 10:42:07 23 Feb 2017 UTC: ERROR: Base.py(272): Could not process sg0250lz - skipping 10:42:07 23 Feb 2017 UTC: WARNING: Base.py(1624): No dives to process 10:42:07 23 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [] 10:42:07 23 Feb 2017 UTC: INFO: Base.py(1780): No dives found to profile 10:42:07 23 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.250 10:42:07 23 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./pdoscmds.bat to ./pdoscmds.bat.250 10:42:07 23 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:42:07 23 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:42:07 23 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:42:07 23 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:42:07 23 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:42:07 23 Feb 2017 UTC: ERROR: Base.py(1960): Dive [250] failed to process completely. The following files were not processed completely: /home/sg626/sg0250lz.r Glider logout not seen - retransmissions from glider possible Consult baselog_170223004159 for details. 10:42:07 23 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:42:07 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:42:07 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:42:07 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:42:07 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:42:07 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:42:07 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:42:07 23 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:42:07 23 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:42:07 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:42:07 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:42:07 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:42:07 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:42:07 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:42:07 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:42:07 23 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:42:07 23 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:42:07 23 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:42:07 23 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:42:07 23 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:42:07 23 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:42:07 23 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:42:07 23 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:42:07 23 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 10:42:07 23 Feb 2017 UTC 10:46:14 23 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 32716 10:46:14 23 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {P} 10:52:22 23 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 581 10:52:22 23 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:52:22 23 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:52:22 23 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:52:22 23 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:52:22 23 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170223005221 ] 10:52:22 23 Feb 2017 UTC: INFO: Base.py(1333): PID:589 10:52:22 23 Feb 2017 UTC: INFO: Base.py(1375): Started processing 10:52:22 23 Feb 2017 UTC 10:52:22 23 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:52:23 23 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:52:23 23 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:52:23 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:52:23 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:250 calls_made:3 call_cycle:0 10:52:23 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:52:23 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:250 calls_made:3 call_cycle:0 10:52:23 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:52:23 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:250 calls_made:3 call_cycle:0 10:52:23 23 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:250 calls_made:3 call_cycle:0 2308.3120 -15636.7970 02/23/17 10:38:18 UTC) to sdrifter@soest.hawaii.edu 10:52:23 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:250 calls_made:3 call_cycle:0 10:52:23 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:52:23 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:250 calls_made:3 call_cycle:0 10:52:23 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:52:23 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:250 calls_made:3 call_cycle:0 10:52:23 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:52:23 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:250 calls_made:3 call_cycle:0 10:52:23 23 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:52:23 23 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:52:27 23 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:52:28 23 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:52:28 23 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:52:28 23 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:52:28 23 Feb 2017 UTC: INFO: Base.py(743): Processing ./sg0250pz.000 10:52:28 23 Feb 2017 UTC: INFO: Base.py(1593): Processed pdos logfile(s) ['sg0250pz.000'] 10:52:28 23 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:52:29 23 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:52:29 23 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0225kz 10:52:29 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x00 10:52:29 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x01 10:52:29 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x02 10:52:29 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x03 10:52:29 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x04 10:52:29 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x05 10:52:29 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x06 10:52:29 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x07 10:52:29 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x08 10:52:29 23 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0225kz.r in process_file_group 10:52:29 23 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0250lz 10:52:29 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0250lz.x00 10:52:29 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0250lz.x01 10:52:29 23 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0250lz.r in process_file_group 10:52:29 23 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260250.log 10:52:29 23 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:52:29 23 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0250dz 10:52:29 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0250dz.x00 10:52:29 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0250dz.x01 10:52:29 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0250dz.x02 10:52:29 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0250dz.x03 10:52:29 23 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0250dz.r in process_file_group 10:52:29 23 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [225, 250] 10:52:29 23 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [250] 10:52:29 23 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260250) for profiles 10:52:29 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 10:52:30 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/543) 543 to QC_BAD because CT out of water 10:52:30 23 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.013m) 10:52:30 23 Feb 2017 UTC: INFO: QC.py(365): Changed (3/543) 2 3 219 to QC_PROBABLY_BAD because raw temperature spikes 10:52:30 23 Feb 2017 UTC: INFO: QC.py(377): Changed (1/543) 543 to QC_BAD because raw salinity below bound 10:52:30 23 Feb 2017 UTC: INFO: QC.py(408): Changed (1/543) 219 to QC_PROBABLY_BAD because raw conductivity spikes 10:52:30 23 Feb 2017 UTC: INFO: QC.py(180): Changed (3/543) 2 3 219 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 10:52:30 23 Feb 2017 UTC: INFO: QC.py(365): Changed (3/543) 2 3 219 to QC_INTERPOLATED because temperature spikes 10:52:30 23 Feb 2017 UTC: INFO: QC.py(377): Changed (1/543) 543 to QC_BAD because salinity below bound 10:52:30 23 Feb 2017 UTC: INFO: QC.py(408): Changed (1/543) 219 to QC_INTERPOLATED because conductivity spikes 10:52:30 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/543) 217:221 to QC_BAD because slow apogee CT flow 10:52:30 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/543) 1:6 to QC_BAD because prior to dive start 10:52:30 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/543) 1:6 217:221 543 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:52:30 23 Feb 2017 UTC: INFO: QC.py(180): Changed (12/543) 1:6 217:221 543 to QC_BAD because changed corrected salin implies changed speed 10:52:30 23 Feb 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 542 10:52:30 23 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 10:52:30 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.76 cm/s 10:52:30 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.31 cm/s 10:52:30 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:52:30 23 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (163/543) 118:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:52:30 23 Feb 2017 UTC: INFO: QC.py(180): Changed (2/543) 2 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 10:52:30 23 Feb 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/543) 542 to QC_BAD because slow flow in SBE43 10:52:30 23 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (163/543) 118:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 10:52:30 23 Feb 2017 UTC: INFO: QC.py(180): Changed (2/543) 2 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 10:52:30 23 Feb 2017 UTC: INFO: QC.py(180): Changed (12/543) 1:6 217:221 543 to QC_BAD because changed salinity implies changed optode oxygen 10:52:30 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:52:30 23 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:52:30 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 10:52:31 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 250: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.21% reduction 10:52:31 23 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.250 10:52:31 23 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./pdoscmds.bat to ./pdoscmds.bat.250 10:52:31 23 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:52:31 23 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:52:31 23 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:52:31 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 10:52:31 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 10:54:28 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 10:54:29 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 10:54:29 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 10:54:50 23 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:54:50 23 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:54:50 23 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 10:54:50 23 Feb 2017 UTC /home/sg626/p6260250.log /home/sg626/p6260250.eng /home/sg626/p6260225.cap /home/sg626/p6260250.asc /home/sg626/p6260250.pro /home/sg626/p6260250.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 10:54:50 23 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:54:50 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:54:50 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:54:50 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:54:50 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:54:50 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:54:50 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:54:50 23 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:54:50 23 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:54:50 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:54:50 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:54:50 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:54:50 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:54:50 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:54:50 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:54:50 23 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:54:50 23 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:54:50 23 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:54:50 23 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:54:50 23 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:54:50 23 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:54:50 23 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:54:50 23 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:54:50 23 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 10:54:50 23 Feb 2017 UTC 13:53:30 23 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 5836 13:53:30 23 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {P} 13:59:50 23 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 6010 13:59:50 23 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:59:50 23 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:59:50 23 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:59:50 23 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:59:50 23 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170223035949 ] 13:59:50 23 Feb 2017 UTC: INFO: Base.py(1333): PID:6018 13:59:50 23 Feb 2017 UTC: INFO: Base.py(1375): Started processing 13:59:50 23 Feb 2017 UTC 13:59:50 23 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:59:51 23 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:59:51 23 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:59:51 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:59:51 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:251 calls_made:1 call_cycle:0 13:59:51 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:59:51 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:251 calls_made:1 call_cycle:0 13:59:51 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:59:51 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:251 calls_made:1 call_cycle:0 13:59:51 23 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:251 calls_made:1 call_cycle:0 2307.6050 -15637.6040 02/23/17 13:51:27 UTC) to sdrifter@soest.hawaii.edu 13:59:51 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:251 calls_made:1 call_cycle:0 13:59:51 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:59:51 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:251 calls_made:1 call_cycle:0 13:59:51 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:59:51 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:251 calls_made:1 call_cycle:0 13:59:51 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:59:51 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:251 calls_made:1 call_cycle:0 13:59:51 23 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:59:51 23 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:59:55 23 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:59:56 23 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:59:56 23 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:59:56 23 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:59:56 23 Feb 2017 UTC: INFO: Base.py(743): Processing ./sg0251pz.000 13:59:56 23 Feb 2017 UTC: INFO: Base.py(1593): Processed pdos logfile(s) ['sg0251pz.000'] 13:59:56 23 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:59:57 23 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:59:57 23 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0225kz 13:59:57 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x00 13:59:57 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x01 13:59:57 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x02 13:59:57 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x03 13:59:57 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x04 13:59:57 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x05 13:59:57 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x06 13:59:57 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x07 13:59:57 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x08 13:59:57 23 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0225kz.r in process_file_group 13:59:57 23 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0251lz 13:59:57 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0251lz.x00 13:59:57 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0251lz.x01 13:59:57 23 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0251lz.r in process_file_group 13:59:57 23 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260251.log 13:59:57 23 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:59:57 23 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0251dz 13:59:57 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0251dz.x00 13:59:57 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0251dz.x01 13:59:57 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0251dz.x02 13:59:57 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0251dz.x03 13:59:57 23 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0251dz.r in process_file_group 13:59:57 23 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [225, 251] 13:59:57 23 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [251] 13:59:57 23 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260251) for profiles 13:59:57 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:59:57 23 Feb 2017 UTC: INFO: QC.py(365): Changed (4/524) 2 224 252 253 to QC_PROBABLY_BAD because raw temperature spikes 13:59:57 23 Feb 2017 UTC: INFO: QC.py(408): Changed (1/524) 252 to QC_PROBABLY_BAD because raw conductivity spikes 13:59:57 23 Feb 2017 UTC: INFO: QC.py(180): Changed (4/524) 2 224 252 253 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:59:58 23 Feb 2017 UTC: INFO: QC.py(365): Changed (4/524) 2 224 252 253 to QC_INTERPOLATED because temperature spikes 13:59:58 23 Feb 2017 UTC: INFO: QC.py(408): Changed (1/524) 252 to QC_INTERPOLATED because conductivity spikes 13:59:58 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/524) 222:226 to QC_BAD because slow apogee CT flow 13:59:58 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/524) 1:6 to QC_BAD because prior to dive start 13:59:58 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/524) 1:6 222:226 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:59:58 23 Feb 2017 UTC: INFO: QC.py(180): Changed (11/524) 1:6 222:226 to QC_BAD because changed corrected salin implies changed speed 13:59:58 23 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:59:58 23 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 251 interp_salinity data_points in_between 348 354 % suspect thermal-inertia points 349:351 13:59:58 23 Feb 2017 UTC: INFO: QC.py(180): Changed (2/524) 252 253 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 13:59:58 23 Feb 2017 UTC: INFO: QC.py(180): Changed (2/524) 252 253 to QC_INTERPOLATED because changed corrected temp implies changed speed 13:59:58 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.89 cm/s 13:59:58 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.19 cm/s 13:59:58 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:59:58 23 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (164/524) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:59:58 23 Feb 2017 UTC: INFO: QC.py(180): Changed (1/524) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:59:58 23 Feb 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/524) 524 to QC_BAD because slow flow in SBE43 13:59:58 23 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (164/524) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:59:58 23 Feb 2017 UTC: INFO: QC.py(180): Changed (1/524) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:59:58 23 Feb 2017 UTC: INFO: QC.py(180): Changed (11/524) 1:6 222:226 to QC_BAD because changed salinity implies changed optode oxygen 13:59:58 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:59:58 23 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:59:58 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:59:58 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 251: Data set size for profile, binned and kkyy files reduced by 11 points, a 2.10% reduction 13:59:59 23 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.251 13:59:59 23 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./pdoscmds.bat to ./pdoscmds.bat.251 13:59:59 23 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:59:59 23 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:59:59 23 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:59:59 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:59:59 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 14:01:56 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 14:01:57 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 14:01:57 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 14:02:18 23 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:02:18 23 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:02:18 23 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:02:18 23 Feb 2017 UTC /home/sg626/p6260251.log /home/sg626/p6260251.eng /home/sg626/p6260225.cap /home/sg626/p6260251.asc /home/sg626/p6260251.pro /home/sg626/p6260251.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 14:02:18 23 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:02:18 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:02:18 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:02:18 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:02:18 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:02:18 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:02:18 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:02:18 23 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:02:18 23 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:02:18 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:02:18 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:02:18 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:02:18 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:02:18 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:02:18 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:02:18 23 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:02:18 23 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:02:18 23 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:02:18 23 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:02:18 23 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:02:18 23 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:02:18 23 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:02:18 23 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:02:18 23 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 14:02:18 23 Feb 2017 UTC 16:58:39 23 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 10698 16:58:39 23 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {P} 17:05:01 23 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 11202 17:05:01 23 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:05:01 23 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:05:01 23 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:05:01 23 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:05:01 23 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170223070501 ] 17:05:01 23 Feb 2017 UTC: INFO: Base.py(1333): PID:11209 17:05:01 23 Feb 2017 UTC: INFO: Base.py(1375): Started processing 17:05:01 23 Feb 2017 UTC 17:05:01 23 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:05:02 23 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:05:02 23 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:05:02 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:05:02 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:252 calls_made:1 call_cycle:0 17:05:02 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:05:02 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:252 calls_made:1 call_cycle:0 17:05:02 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:05:02 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:252 calls_made:1 call_cycle:0 17:05:02 23 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:252 calls_made:1 call_cycle:0 2308.0370 -15638.3650 02/23/17 16:56:30 UTC) to sdrifter@soest.hawaii.edu 17:05:02 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:252 calls_made:1 call_cycle:0 17:05:02 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:05:02 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:252 calls_made:1 call_cycle:0 17:05:02 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:05:02 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:252 calls_made:1 call_cycle:0 17:05:02 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:05:02 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:252 calls_made:1 call_cycle:0 17:05:02 23 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:05:02 23 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:05:07 23 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:05:07 23 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:05:07 23 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:05:07 23 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:05:07 23 Feb 2017 UTC: INFO: Base.py(743): Processing ./sg0252pz.000 17:05:07 23 Feb 2017 UTC: INFO: Base.py(1593): Processed pdos logfile(s) ['sg0252pz.000'] 17:05:07 23 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:05:08 23 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:05:08 23 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0225kz 17:05:08 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x00 17:05:08 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x01 17:05:08 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x02 17:05:08 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x03 17:05:08 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x04 17:05:08 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x05 17:05:08 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x06 17:05:08 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x07 17:05:08 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x08 17:05:08 23 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0225kz.r in process_file_group 17:05:08 23 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0252lz 17:05:08 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0252lz.x00 17:05:08 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0252lz.x01 17:05:08 23 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0252lz.r in process_file_group 17:05:08 23 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260252.log 17:05:08 23 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:05:08 23 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0252dz 17:05:08 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0252dz.x00 17:05:08 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0252dz.x01 17:05:08 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0252dz.x02 17:05:08 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0252dz.x03 17:05:08 23 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0252dz.r in process_file_group 17:05:09 23 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [225, 252] 17:05:09 23 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [252] 17:05:09 23 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260252) for profiles 17:05:09 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:05:09 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/506) 506 to QC_BAD because CT out of water 17:05:09 23 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.007m) 17:05:09 23 Feb 2017 UTC: INFO: QC.py(365): Changed (1/506) 220 to QC_PROBABLY_BAD because raw temperature spikes 17:05:09 23 Feb 2017 UTC: INFO: QC.py(180): Changed (1/506) 220 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:05:09 23 Feb 2017 UTC: INFO: QC.py(180): Changed (1/506) 506 to QC_BAD because changed raw cond implies changed raw salinity 17:05:09 23 Feb 2017 UTC: INFO: QC.py(365): Changed (1/506) 220 to QC_INTERPOLATED because temperature spikes 17:05:09 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/506) 218:222 to QC_BAD because slow apogee CT flow 17:05:09 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/506) 1:6 to QC_BAD because prior to dive start 17:05:09 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/506) 1:6 218:222 506 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:05:09 23 Feb 2017 UTC: INFO: QC.py(180): Changed (12/506) 1:6 218:222 506 to QC_BAD because changed corrected salin implies changed speed 17:05:10 23 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:05:10 23 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 252 interp_salinity data_points in_between 321 328 % suspect thermal-inertia points 323 17:05:10 23 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 252 interp_salinity data_points in_between 345 356 % suspect thermal-inertia points 349:354 17:05:10 23 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 252 interp_salinity data_points in_between 358 363 % suspect thermal-inertia points 358:361 17:05:10 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 34.43 cm/s 17:05:10 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.57 cm/s 17:05:10 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:05:10 23 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (157/506) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:05:10 23 Feb 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/506) 505 to QC_BAD because slow flow in SBE43 17:05:10 23 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (157/506) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:05:10 23 Feb 2017 UTC: INFO: QC.py(180): Changed (12/506) 1:6 218:222 506 to QC_BAD because changed salinity implies changed optode oxygen 17:05:10 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:05:10 23 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:05:10 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:05:10 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 252: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.37% reduction 17:05:10 23 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.252 17:05:10 23 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./pdoscmds.bat to ./pdoscmds.bat.252 17:05:10 23 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:05:10 23 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:05:10 23 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:05:10 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:05:10 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:07:08 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 17:07:08 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:07:08 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:07:30 23 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:07:30 23 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:07:30 23 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:07:30 23 Feb 2017 UTC /home/sg626/p6260252.log /home/sg626/p6260252.eng /home/sg626/p6260225.cap /home/sg626/p6260252.asc /home/sg626/p6260252.pro /home/sg626/p6260252.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:07:30 23 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:07:30 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:07:30 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:07:30 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:07:30 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:07:30 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:07:30 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:07:30 23 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:07:30 23 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:07:30 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:07:30 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:07:30 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:07:30 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:07:30 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:07:30 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:07:30 23 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:07:30 23 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:07:30 23 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:07:30 23 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:07:30 23 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:07:30 23 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:07:30 23 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:07:30 23 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:07:30 23 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 17:07:30 23 Feb 2017 UTC 20:02:21 23 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 16076 20:02:21 23 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {P} 20:08:44 23 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 16245 20:08:44 23 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:08:44 23 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:08:44 23 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:08:44 23 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:08:44 23 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170223100844 ] 20:08:44 23 Feb 2017 UTC: INFO: Base.py(1333): PID:16253 20:08:44 23 Feb 2017 UTC: INFO: Base.py(1375): Started processing 20:08:44 23 Feb 2017 UTC 20:08:44 23 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:08:45 23 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:08:45 23 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:08:45 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:08:45 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:253 calls_made:1 call_cycle:0 20:08:45 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:08:45 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:253 calls_made:1 call_cycle:0 20:08:45 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:08:45 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:253 calls_made:1 call_cycle:0 20:08:45 23 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:253 calls_made:1 call_cycle:0 2308.5250 -15638.9780 02/23/17 20:00:13 UTC) to sdrifter@soest.hawaii.edu 20:08:45 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:253 calls_made:1 call_cycle:0 20:08:45 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:08:45 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:253 calls_made:1 call_cycle:0 20:08:45 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:08:45 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:253 calls_made:1 call_cycle:0 20:08:45 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:08:45 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:253 calls_made:1 call_cycle:0 20:08:45 23 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:08:45 23 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:08:50 23 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:08:50 23 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:08:50 23 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:08:50 23 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:08:50 23 Feb 2017 UTC: INFO: Base.py(743): Processing ./sg0253pz.000 20:08:50 23 Feb 2017 UTC: INFO: Base.py(1593): Processed pdos logfile(s) ['sg0253pz.000'] 20:08:50 23 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:08:51 23 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:08:51 23 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0225kz 20:08:51 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x00 20:08:51 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x01 20:08:51 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x02 20:08:51 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x03 20:08:51 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x04 20:08:51 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x05 20:08:51 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x06 20:08:51 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x07 20:08:51 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0225kz.x08 20:08:51 23 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0225kz.r in process_file_group 20:08:52 23 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0253lz 20:08:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0253lz.x00 20:08:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0253lz.x01 20:08:52 23 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0253lz.r in process_file_group 20:08:52 23 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260253.log 20:08:52 23 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:08:52 23 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0253dz 20:08:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0253dz.x00 20:08:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0253dz.x01 20:08:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0253dz.x02 20:08:52 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0253dz.x03 20:08:52 23 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0253dz.r in process_file_group 20:08:52 23 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [225, 253] 20:08:52 23 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [253] 20:08:52 23 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260253) for profiles 20:08:52 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 20:08:52 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/528) 528 to QC_BAD because CT out of water 20:08:52 23 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.040m) 20:08:52 23 Feb 2017 UTC: INFO: QC.py(365): Changed (2/528) 3 217 to QC_PROBABLY_BAD because raw temperature spikes 20:08:52 23 Feb 2017 UTC: INFO: QC.py(180): Changed (2/528) 3 217 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 20:08:52 23 Feb 2017 UTC: INFO: QC.py(180): Changed (1/528) 528 to QC_BAD because changed raw cond implies changed raw salinity 20:08:52 23 Feb 2017 UTC: INFO: QC.py(365): Changed (2/528) 3 217 to QC_INTERPOLATED because temperature spikes 20:08:52 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/528) 215:219 to QC_BAD because slow apogee CT flow 20:08:52 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/528) 1:6 to QC_BAD because prior to dive start 20:08:52 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/528) 527 to QC_BAD because end of climb 20:08:52 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/528) 1:6 215:219 527 528 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 20:08:52 23 Feb 2017 UTC: INFO: QC.py(180): Changed (13/528) 1:6 215:219 527 528 to QC_BAD because changed corrected salin implies changed speed 20:08:53 23 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 20:08:53 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.97 cm/s 20:08:53 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.22 cm/s 20:08:53 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 20:08:53 23 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (154/528) 119 120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 20:08:53 23 Feb 2017 UTC: INFO: QC.py(180): Changed (1/528) 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 20:08:53 23 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (154/528) 119 120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 20:08:53 23 Feb 2017 UTC: INFO: QC.py(180): Changed (1/528) 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 20:08:53 23 Feb 2017 UTC: INFO: QC.py(180): Changed (13/528) 1:6 215:219 527 528 to QC_BAD because changed salinity implies changed optode oxygen 20:08:53 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 20:08:53 23 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 20:08:53 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 20:08:53 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 253: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.46% reduction 20:08:53 23 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.253 20:08:53 23 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./pdoscmds.bat to ./pdoscmds.bat.253 20:08:53 23 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:08:53 23 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:08:53 23 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:08:53 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 20:08:53 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 20:10:52 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 20:10:52 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 20:10:52 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 20:11:14 23 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:11:14 23 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:11:14 23 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:11:14 23 Feb 2017 UTC /home/sg626/p6260253.log /home/sg626/p6260253.eng /home/sg626/p6260225.cap /home/sg626/p6260253.asc /home/sg626/p6260253.pro /home/sg626/p6260253.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 20:11:14 23 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:11:14 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:11:14 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:11:14 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:11:14 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:11:14 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:11:14 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:11:14 23 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:11:14 23 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:11:14 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:11:14 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:11:14 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:11:14 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:11:14 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:11:14 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:11:14 23 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:11:14 23 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:11:14 23 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:11:14 23 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:11:14 23 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:11:14 23 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:11:14 23 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:11:14 23 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:11:14 23 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 20:11:14 23 Feb 2017 UTC 23:11:04 23 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 21922 23:11:04 23 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 23:13:42 23 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 22038 23:13:42 23 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:13:42 23 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:13:42 23 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:13:42 23 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:13:42 23 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170223131341 ] 23:13:42 23 Feb 2017 UTC: INFO: Base.py(1333): PID:22045 23:13:42 23 Feb 2017 UTC: INFO: Base.py(1375): Started processing 23:13:42 23 Feb 2017 UTC 23:13:42 23 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:13:43 23 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:13:43 23 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:13:43 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:13:43 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:254 calls_made:2 call_cycle:0 23:13:43 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:13:43 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:254 calls_made:2 call_cycle:0 23:13:43 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:13:43 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:254 calls_made:2 call_cycle:0 23:13:43 23 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:254 calls_made:2 call_cycle:0 2308.7360 -15639.5010 02/23/17 23:06:48 UTC) to sdrifter@soest.hawaii.edu 23:13:43 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:254 calls_made:2 call_cycle:0 23:13:43 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:13:43 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:254 calls_made:2 call_cycle:0 23:13:43 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:13:43 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:254 calls_made:2 call_cycle:0 23:13:43 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:13:43 23 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:254 calls_made:2 call_cycle:0 23:13:43 23 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:13:43 23 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:13:47 23 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:13:48 23 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:13:48 23 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:13:48 23 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:13:48 23 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:13:48 23 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:13:49 23 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0254lz 23:13:49 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0254lz.x00 23:13:49 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0254lz.x01 23:13:49 23 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0254lz.r in process_file_group 23:13:49 23 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260254.log 23:13:49 23 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:13:49 23 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0254dz 23:13:49 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0254dz.x00 23:13:49 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0254dz.x01 23:13:49 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0254dz.x02 23:13:49 23 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0254dz.x03 23:13:49 23 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0254dz.r in process_file_group 23:13:49 23 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [254] 23:13:49 23 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [254] 23:13:49 23 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260254) for profiles 23:13:49 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 23:13:50 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/522) 522 to QC_BAD because CT out of water 23:13:50 23 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.025m) 23:13:50 23 Feb 2017 UTC: INFO: QC.py(365): Changed (1/522) 2 to QC_PROBABLY_BAD because raw temperature spikes 23:13:50 23 Feb 2017 UTC: INFO: QC.py(180): Changed (1/522) 2 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 23:13:50 23 Feb 2017 UTC: INFO: QC.py(180): Changed (1/522) 522 to QC_BAD because changed raw cond implies changed raw salinity 23:13:50 23 Feb 2017 UTC: INFO: QC.py(365): Changed (1/522) 2 to QC_INTERPOLATED because temperature spikes 23:13:50 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/522) 220:224 to QC_BAD because slow apogee CT flow 23:13:50 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/522) 1:6 to QC_BAD because prior to dive start 23:13:50 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/522) 1:6 220:224 522 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 23:13:50 23 Feb 2017 UTC: INFO: QC.py(180): Changed (12/522) 1:6 220:224 522 to QC_BAD because changed corrected salin implies changed speed 23:13:50 23 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 23:13:50 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.76 cm/s 23:13:50 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.20 cm/s 23:13:50 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 23:13:50 23 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/522) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 23:13:50 23 Feb 2017 UTC: INFO: QC.py(180): Changed (1/522) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 23:13:50 23 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/522) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 23:13:50 23 Feb 2017 UTC: INFO: QC.py(180): Changed (1/522) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 23:13:50 23 Feb 2017 UTC: INFO: QC.py(180): Changed (12/522) 1:6 220:224 522 to QC_BAD because changed salinity implies changed optode oxygen 23:13:50 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 23:13:50 23 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 23:13:50 23 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 23:13:51 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 254: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.30% reduction 23:13:51 23 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.254 23:13:51 23 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:13:51 23 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:13:51 23 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:13:51 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 23:13:51 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 23:15:50 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 23:15:51 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 23:15:51 23 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 23:16:13 23 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:16:13 23 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:16:13 23 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:16:13 23 Feb 2017 UTC /home/sg626/p6260254.log /home/sg626/p6260254.eng /home/sg626/p6260254.asc /home/sg626/p6260254.pro /home/sg626/p6260254.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 23:16:13 23 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:16:13 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:16:13 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:16:13 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:16:13 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:16:13 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:16:13 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:16:13 23 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:16:13 23 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:16:13 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:16:13 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:16:13 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:16:13 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:16:13 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:16:13 23 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:16:13 23 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:16:13 23 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:16:13 23 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:16:13 23 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:16:13 23 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:16:13 23 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:16:13 23 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:16:13 23 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:16:13 23 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 23:16:13 23 Feb 2017 UTC 02:17:02 24 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 27422 02:17:02 24 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:19:49 24 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 27543 02:19:49 24 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:19:49 24 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:19:49 24 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:19:49 24 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:19:49 24 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170223161949 ] 02:19:49 24 Feb 2017 UTC: INFO: Base.py(1333): PID:27550 02:19:50 24 Feb 2017 UTC: INFO: Base.py(1375): Started processing 02:19:50 24 Feb 2017 UTC 02:19:50 24 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:19:50 24 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:19:50 24 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:19:50 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:19:50 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:255 calls_made:1 call_cycle:0 02:19:50 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:19:50 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:255 calls_made:1 call_cycle:0 02:19:50 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:19:50 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:255 calls_made:1 call_cycle:0 02:19:50 24 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:255 calls_made:1 call_cycle:0 2309.5800 -15639.7170 02/24/17 02:14:55 UTC) to sdrifter@soest.hawaii.edu 02:19:51 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:255 calls_made:1 call_cycle:0 02:19:51 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:19:51 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:255 calls_made:1 call_cycle:0 02:19:51 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:19:51 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:255 calls_made:1 call_cycle:0 02:19:51 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:19:51 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:255 calls_made:1 call_cycle:0 02:19:51 24 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:19:51 24 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:19:55 24 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:19:56 24 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:19:56 24 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:19:56 24 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:19:56 24 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:19:56 24 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:19:57 24 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0255lz 02:19:57 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0255lz.x00 02:19:57 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0255lz.x01 02:19:57 24 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0255lz.r in process_file_group 02:19:57 24 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260255.log 02:19:57 24 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 02:19:57 24 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0255dz 02:19:57 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0255dz.x00 02:19:57 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0255dz.x01 02:19:57 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0255dz.x02 02:19:57 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0255dz.x03 02:19:57 24 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0255dz.r in process_file_group 02:19:57 24 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [255] 02:19:57 24 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [255] 02:19:57 24 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260255) for profiles 02:19:57 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 02:19:57 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/554) 554 to QC_BAD because CT out of water 02:19:57 24 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.036m) 02:19:57 24 Feb 2017 UTC: INFO: QC.py(365): Changed (2/554) 3 4 to QC_PROBABLY_BAD because raw temperature spikes 02:19:57 24 Feb 2017 UTC: INFO: QC.py(377): Changed (1/554) 554 to QC_BAD because raw salinity below bound 02:19:57 24 Feb 2017 UTC: INFO: QC.py(180): Changed (2/554) 3 4 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:19:57 24 Feb 2017 UTC: INFO: QC.py(365): Changed (2/554) 3 4 to QC_INTERPOLATED because temperature spikes 02:19:57 24 Feb 2017 UTC: INFO: QC.py(377): Changed (1/554) 554 to QC_BAD because salinity below bound 02:19:57 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/554) 214:218 to QC_BAD because slow apogee CT flow 02:19:57 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/554) 1:6 to QC_BAD because prior to dive start 02:19:57 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/554) 1:6 214:218 554 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:19:57 24 Feb 2017 UTC: INFO: QC.py(180): Changed (12/554) 1:6 214:218 554 to QC_BAD because changed corrected salin implies changed speed 02:19:58 24 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:19:58 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.18 cm/s 02:19:58 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.22 cm/s 02:19:58 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:19:58 24 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (159/554) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:19:58 24 Feb 2017 UTC: INFO: QC.py(180): Changed (2/554) 3 4 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:19:58 24 Feb 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/554) 553 to QC_BAD because slow flow in SBE43 02:19:58 24 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (159/554) 117:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 02:19:58 24 Feb 2017 UTC: INFO: QC.py(180): Changed (2/554) 3 4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:19:58 24 Feb 2017 UTC: INFO: QC.py(180): Changed (12/554) 1:6 214:218 554 to QC_BAD because changed salinity implies changed optode oxygen 02:19:58 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:19:58 24 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:19:58 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 02:19:58 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 255: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.17% reduction 02:19:58 24 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.255 02:19:58 24 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:19:58 24 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:19:58 24 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:19:59 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 02:19:59 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 02:21:57 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 02:21:58 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 02:21:58 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 02:22:20 24 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:22:20 24 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:22:20 24 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:22:20 24 Feb 2017 UTC /home/sg626/p6260255.log /home/sg626/p6260255.eng /home/sg626/p6260255.asc /home/sg626/p6260255.pro /home/sg626/p6260255.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 02:22:20 24 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:22:20 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:22:20 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:22:20 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:22:20 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:22:20 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:22:20 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:22:20 24 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:22:20 24 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:22:20 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:22:20 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:22:20 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:22:20 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:22:20 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:22:20 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:22:20 24 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:22:20 24 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:22:20 24 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:22:20 24 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:22:20 24 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:22:20 24 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:22:20 24 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:22:20 24 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:22:20 24 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 02:22:20 24 Feb 2017 UTC 05:21:31 24 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 32759 05:21:31 24 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:24:09 24 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 417 05:24:09 24 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:24:09 24 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:24:09 24 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:24:09 24 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:24:09 24 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170223192408 ] 05:24:09 24 Feb 2017 UTC: INFO: Base.py(1333): PID:424 05:24:09 24 Feb 2017 UTC: INFO: Base.py(1375): Started processing 05:24:09 24 Feb 2017 UTC 05:24:09 24 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:24:10 24 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:24:10 24 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:24:10 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:24:10 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:256 calls_made:1 call_cycle:0 05:24:10 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:24:10 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:256 calls_made:1 call_cycle:0 05:24:10 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:24:10 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:256 calls_made:1 call_cycle:0 05:24:10 24 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:256 calls_made:1 call_cycle:0 2308.9060 -15640.4930 02/24/17 05:19:30 UTC) to sdrifter@soest.hawaii.edu 05:24:10 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:256 calls_made:1 call_cycle:0 05:24:10 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:24:10 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:256 calls_made:1 call_cycle:0 05:24:10 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:24:10 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:256 calls_made:1 call_cycle:0 05:24:10 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:24:10 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:256 calls_made:1 call_cycle:0 05:24:10 24 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:24:10 24 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:24:14 24 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:24:15 24 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:24:15 24 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:24:15 24 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:24:15 24 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:24:15 24 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:24:16 24 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0256lz 05:24:16 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0256lz.x00 05:24:16 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0256lz.x01 05:24:16 24 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0256lz.r in process_file_group 05:24:16 24 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260256.log 05:24:16 24 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:24:16 24 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0256dz 05:24:16 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0256dz.x00 05:24:16 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0256dz.x01 05:24:16 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0256dz.x02 05:24:16 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0256dz.x03 05:24:16 24 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0256dz.r in process_file_group 05:24:17 24 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [256] 05:24:17 24 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [256] 05:24:17 24 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260256) for profiles 05:24:17 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:24:17 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/526) 525 526 to QC_BAD because CT out of water 05:24:17 24 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.083m) 05:24:17 24 Feb 2017 UTC: INFO: QC.py(365): Changed (1/526) 525 to QC_PROBABLY_BAD because raw temperature spikes 05:24:17 24 Feb 2017 UTC: INFO: QC.py(180): Changed (1/526) 525 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:24:17 24 Feb 2017 UTC: INFO: QC.py(180): Changed (2/526) 525 526 to QC_BAD because changed raw cond implies changed raw salinity 05:24:17 24 Feb 2017 UTC: INFO: QC.py(365): Changed (1/526) 525 to QC_INTERPOLATED because temperature spikes 05:24:17 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/526) 216:220 to QC_BAD because slow apogee CT flow 05:24:17 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/526) 1:6 to QC_BAD because prior to dive start 05:24:17 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/526) 1:6 216:220 525 526 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:24:17 24 Feb 2017 UTC: INFO: QC.py(180): Changed (13/526) 1:6 216:220 525 526 to QC_BAD because changed corrected salin implies changed speed 05:24:17 24 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:24:17 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.67 cm/s 05:24:17 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.33 cm/s 05:24:17 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:24:17 24 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/526) 118:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:24:17 24 Feb 2017 UTC: INFO: QC.py(180): Changed (1/526) 525 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:24:17 24 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/526) 118:120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:24:17 24 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/526) 5 to QC_BAD because bad aa4330 oyxgen 05:24:17 24 Feb 2017 UTC: INFO: QC.py(180): Changed (1/526) 525 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:24:17 24 Feb 2017 UTC: INFO: QC.py(180): Changed (12/526) 1:4 6 216:220 525 526 to QC_BAD because changed salinity implies changed optode oxygen 05:24:17 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:24:17 24 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:24:17 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 05:24:18 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 256: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.47% reduction 05:24:18 24 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.256 05:24:18 24 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:24:18 24 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:24:18 24 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:24:18 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 05:24:18 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 05:26:19 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 05:26:20 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 05:26:20 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 05:26:42 24 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:26:42 24 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:26:42 24 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:26:42 24 Feb 2017 UTC /home/sg626/p6260256.log /home/sg626/p6260256.eng /home/sg626/p6260256.asc /home/sg626/p6260256.pro /home/sg626/p6260256.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 05:26:42 24 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:26:42 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:26:42 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:26:42 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:26:42 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:26:42 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:26:42 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:26:42 24 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:26:42 24 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:26:42 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:26:42 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:26:42 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:26:42 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:26:42 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:26:42 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:26:42 24 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:26:42 24 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:26:42 24 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:26:42 24 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:26:42 24 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:26:42 24 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:26:42 24 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:26:42 24 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:26:42 24 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 05:26:42 24 Feb 2017 UTC 08:27:37 24 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 5384 08:27:37 24 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:30:19 24 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 5645 08:30:19 24 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:30:19 24 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:30:19 24 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:30:19 24 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:30:19 24 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170223223018 ] 08:30:19 24 Feb 2017 UTC: INFO: Base.py(1333): PID:5653 08:30:19 24 Feb 2017 UTC: INFO: Base.py(1375): Started processing 08:30:19 24 Feb 2017 UTC 08:30:19 24 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:30:20 24 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:30:20 24 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:30:20 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:30:20 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:257 calls_made:1 call_cycle:0 08:30:20 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:30:20 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:257 calls_made:1 call_cycle:0 08:30:20 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:30:20 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:257 calls_made:1 call_cycle:0 08:30:20 24 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:257 calls_made:1 call_cycle:0 2309.6260 -15641.1160 02/24/17 08:25:22 UTC) to sdrifter@soest.hawaii.edu 08:30:20 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:257 calls_made:1 call_cycle:0 08:30:20 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:30:20 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:257 calls_made:1 call_cycle:0 08:30:20 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:30:20 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:257 calls_made:1 call_cycle:0 08:30:20 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:30:20 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:257 calls_made:1 call_cycle:0 08:30:20 24 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:30:20 24 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:30:25 24 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:30:25 24 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:30:25 24 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:30:25 24 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:30:25 24 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:30:25 24 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:30:26 24 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0257lz 08:30:26 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0257lz.x00 08:30:26 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0257lz.x01 08:30:26 24 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0257lz.r in process_file_group 08:30:26 24 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260257.log 08:30:26 24 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:30:26 24 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0257dz 08:30:26 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0257dz.x00 08:30:26 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0257dz.x01 08:30:26 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0257dz.x02 08:30:26 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0257dz.x03 08:30:26 24 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0257dz.r in process_file_group 08:30:27 24 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [257] 08:30:27 24 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [257] 08:30:27 24 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260257) for profiles 08:30:27 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:30:27 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/541) 541 to QC_BAD because CT out of water 08:30:27 24 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.014m) 08:30:27 24 Feb 2017 UTC: INFO: QC.py(365): Changed (3/541) 2:4 to QC_PROBABLY_BAD because raw temperature spikes 08:30:27 24 Feb 2017 UTC: INFO: QC.py(377): Changed (1/541) 541 to QC_BAD because raw salinity below bound 08:30:27 24 Feb 2017 UTC: INFO: QC.py(408): Changed (2/541) 257 258 to QC_PROBABLY_BAD because raw conductivity spikes 08:30:27 24 Feb 2017 UTC: INFO: QC.py(180): Changed (3/541) 2:4 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:30:27 24 Feb 2017 UTC: INFO: QC.py(180): Changed (2/541) 257 258 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 08:30:27 24 Feb 2017 UTC: INFO: QC.py(365): Changed (3/541) 2:4 to QC_INTERPOLATED because temperature spikes 08:30:27 24 Feb 2017 UTC: INFO: QC.py(377): Changed (1/541) 541 to QC_BAD because salinity below bound 08:30:27 24 Feb 2017 UTC: INFO: QC.py(408): Changed (2/541) 257 258 to QC_INTERPOLATED because conductivity spikes 08:30:27 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/541) 225:230 to QC_BAD because slow apogee CT flow 08:30:27 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/541) 1:6 to QC_BAD because prior to dive start 08:30:27 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/541) 1:6 225:230 541 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:30:27 24 Feb 2017 UTC: INFO: QC.py(180): Changed (13/541) 1:6 225:230 541 to QC_BAD because changed corrected salin implies changed speed 08:30:28 24 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:30:28 24 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 257 interp_salinity data_points in_between 337 340 % suspect thermal-inertia points 339 08:30:28 24 Feb 2017 UTC: INFO: QC.py(180): Changed (2/541) 257 258 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 08:30:28 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.47 cm/s 08:30:28 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.41 cm/s 08:30:28 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:30:28 24 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (163/541) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:30:28 24 Feb 2017 UTC: INFO: QC.py(180): Changed (3/541) 2:4 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:30:28 24 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (163/541) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:30:28 24 Feb 2017 UTC: INFO: QC.py(180): Changed (3/541) 2:4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:30:28 24 Feb 2017 UTC: INFO: QC.py(180): Changed (13/541) 1:6 225:230 541 to QC_BAD because changed salinity implies changed optode oxygen 08:30:28 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:30:28 24 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:30:28 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 08:30:28 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 257: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.40% reduction 08:30:28 24 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.257 08:30:28 24 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:30:28 24 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:30:28 24 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:30:28 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 08:30:28 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 08:32:29 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 08:32:29 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 08:32:29 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 08:32:51 24 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:32:51 24 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:32:51 24 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:32:51 24 Feb 2017 UTC /home/sg626/p6260257.log /home/sg626/p6260257.eng /home/sg626/p6260257.asc /home/sg626/p6260257.pro /home/sg626/p6260257.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 08:32:51 24 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:32:51 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:32:51 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:32:51 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:32:51 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:32:51 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:32:51 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:32:51 24 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:32:51 24 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:32:51 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:32:51 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:32:51 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:32:51 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:32:51 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:32:51 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:32:51 24 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:32:51 24 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:32:51 24 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:32:51 24 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:32:51 24 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:32:51 24 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:32:51 24 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:32:51 24 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:32:51 24 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 08:32:51 24 Feb 2017 UTC 11:36:35 24 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 10688 11:36:35 24 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 11:39:14 24 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 10808 11:39:14 24 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:39:14 24 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 11:39:14 24 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 11:39:14 24 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:39:14 24 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170224013913 ] 11:39:14 24 Feb 2017 UTC: INFO: Base.py(1333): PID:10816 11:39:14 24 Feb 2017 UTC: INFO: Base.py(1375): Started processing 11:39:14 24 Feb 2017 UTC 11:39:14 24 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 11:39:15 24 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 11:39:15 24 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:39:15 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:39:15 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:258 calls_made:1 call_cycle:0 11:39:15 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:39:15 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:258 calls_made:1 call_cycle:0 11:39:15 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:39:15 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:258 calls_made:1 call_cycle:0 11:39:15 24 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:258 calls_made:1 call_cycle:0 2310.3510 -15641.7710 02/24/17 11:34:25 UTC) to sdrifter@soest.hawaii.edu 11:39:15 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:258 calls_made:1 call_cycle:0 11:39:15 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:39:15 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:258 calls_made:1 call_cycle:0 11:39:15 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:39:15 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:258 calls_made:1 call_cycle:0 11:39:15 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:39:15 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:258 calls_made:1 call_cycle:0 11:39:15 24 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:39:15 24 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:39:20 24 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:39:20 24 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:39:20 24 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 11:39:20 24 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:39:20 24 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:39:20 24 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 11:39:21 24 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0258lz 11:39:21 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0258lz.x00 11:39:21 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0258lz.x01 11:39:21 24 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0258lz.r in process_file_group 11:39:21 24 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260258.log 11:39:21 24 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 11:39:21 24 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0258dz 11:39:21 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0258dz.x00 11:39:21 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0258dz.x01 11:39:21 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0258dz.x02 11:39:21 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0258dz.x03 11:39:21 24 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0258dz.r in process_file_group 11:39:22 24 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [258] 11:39:22 24 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [258] 11:39:22 24 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260258) for profiles 11:39:22 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 11:39:22 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/573) 573 to QC_BAD because CT out of water 11:39:22 24 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.049m) 11:39:22 24 Feb 2017 UTC: INFO: QC.py(365): Changed (2/573) 2 3 to QC_PROBABLY_BAD because raw temperature spikes 11:39:22 24 Feb 2017 UTC: INFO: QC.py(377): Changed (1/573) 573 to QC_BAD because raw salinity below bound 11:39:22 24 Feb 2017 UTC: INFO: QC.py(180): Changed (2/573) 2 3 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 11:39:22 24 Feb 2017 UTC: INFO: QC.py(365): Changed (2/573) 2 3 to QC_INTERPOLATED because temperature spikes 11:39:22 24 Feb 2017 UTC: INFO: QC.py(377): Changed (1/573) 573 to QC_BAD because salinity below bound 11:39:22 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/573) 225:229 to QC_BAD because slow apogee CT flow 11:39:22 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/573) 1:6 to QC_BAD because prior to dive start 11:39:22 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/573) 1:6 225:229 573 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 11:39:22 24 Feb 2017 UTC: INFO: QC.py(180): Changed (12/573) 1:6 225:229 573 to QC_BAD because changed corrected salin implies changed speed 11:39:23 24 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 11:39:23 24 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 258 interp_salinity data_points in_between 300 331 % suspect thermal-inertia points 326 11:39:23 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.03 cm/s 11:39:23 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.22 cm/s 11:39:23 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 11:39:23 24 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/573) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 11:39:23 24 Feb 2017 UTC: INFO: QC.py(180): Changed (2/573) 2 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 11:39:23 24 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/573) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 11:39:23 24 Feb 2017 UTC: INFO: QC.py(180): Changed (2/573) 2 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 11:39:23 24 Feb 2017 UTC: INFO: QC.py(180): Changed (12/573) 1:6 225:229 573 to QC_BAD because changed salinity implies changed optode oxygen 11:39:23 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 11:39:23 24 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 11:39:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 11:39:23 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 258: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.09% reduction 11:39:23 24 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.258 11:39:23 24 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:39:23 24 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:39:23 24 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:39:23 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 11:39:23 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 11:41:23 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 11:41:24 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 11:41:24 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 11:41:46 24 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:41:46 24 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:41:46 24 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:41:46 24 Feb 2017 UTC /home/sg626/p6260258.log /home/sg626/p6260258.eng /home/sg626/p6260258.asc /home/sg626/p6260258.pro /home/sg626/p6260258.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 11:41:46 24 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:41:46 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:41:46 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:41:46 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:41:46 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:41:46 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:41:46 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:41:46 24 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:41:46 24 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:41:46 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:41:46 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:41:46 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:41:46 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:41:46 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:41:46 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:41:46 24 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:41:46 24 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 11:41:46 24 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 11:41:46 24 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 11:41:46 24 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 11:41:46 24 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:41:46 24 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:41:46 24 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:41:46 24 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 11:41:46 24 Feb 2017 UTC 14:45:30 24 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 15974 14:45:30 24 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:48:14 24 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 16088 14:48:14 24 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:48:14 24 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 14:48:14 24 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 14:48:14 24 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:48:14 24 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170224044813 ] 14:48:14 24 Feb 2017 UTC: INFO: Base.py(1333): PID:16096 14:48:14 24 Feb 2017 UTC: INFO: Base.py(1375): Started processing 14:48:14 24 Feb 2017 UTC 14:48:14 24 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 14:48:15 24 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 14:48:15 24 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:48:15 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:48:15 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:259 calls_made:1 call_cycle:0 14:48:15 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:48:15 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:259 calls_made:1 call_cycle:0 14:48:15 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:48:15 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:259 calls_made:1 call_cycle:0 14:48:15 24 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:259 calls_made:1 call_cycle:0 2311.2320 -15642.5880 02/24/17 14:43:30 UTC) to sdrifter@soest.hawaii.edu 14:48:15 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:259 calls_made:1 call_cycle:0 14:48:15 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:48:15 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:259 calls_made:1 call_cycle:0 14:48:15 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:48:15 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:259 calls_made:1 call_cycle:0 14:48:15 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:48:15 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:259 calls_made:1 call_cycle:0 14:48:15 24 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:48:15 24 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:48:20 24 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:48:20 24 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:48:20 24 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 14:48:20 24 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:48:20 24 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:48:20 24 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 14:48:21 24 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0259lz 14:48:21 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0259lz.x00 14:48:21 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0259lz.x01 14:48:21 24 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0259lz.r in process_file_group 14:48:21 24 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260259.log 14:48:21 24 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 14:48:21 24 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0259dz 14:48:21 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0259dz.x00 14:48:21 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0259dz.x01 14:48:21 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0259dz.x02 14:48:21 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0259dz.x03 14:48:21 24 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0259dz.r in process_file_group 14:48:22 24 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [259] 14:48:22 24 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [259] 14:48:22 24 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260259) for profiles 14:48:22 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 14:48:22 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/572) 570 571 to QC_BAD because CT out of water 14:48:22 24 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.069m) 14:48:22 24 Feb 2017 UTC: INFO: QC.py(365): Changed (1/572) 5 to QC_PROBABLY_BAD because raw temperature spikes 14:48:22 24 Feb 2017 UTC: INFO: QC.py(377): Changed (2/572) 571 572 to QC_BAD because raw salinity below bound 14:48:22 24 Feb 2017 UTC: INFO: QC.py(388): Changed (1/572) 572 to QC_BAD because bad raw salinity indicates raw conductivity issues 14:48:22 24 Feb 2017 UTC: INFO: QC.py(408): Changed (2/572) 2 367 to QC_PROBABLY_BAD because raw conductivity spikes 14:48:22 24 Feb 2017 UTC: INFO: QC.py(180): Changed (1/572) 5 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:48:22 24 Feb 2017 UTC: INFO: QC.py(180): Changed (2/572) 2 367 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 14:48:22 24 Feb 2017 UTC: INFO: QC.py(180): Changed (1/572) 570 to QC_BAD because changed raw cond implies changed raw salinity 14:48:22 24 Feb 2017 UTC: INFO: QC.py(365): Changed (1/572) 5 to QC_INTERPOLATED because temperature spikes 14:48:22 24 Feb 2017 UTC: INFO: QC.py(377): Changed (2/572) 571 572 to QC_BAD because salinity below bound 14:48:22 24 Feb 2017 UTC: INFO: QC.py(388): Changed (1/572) 572 to QC_BAD because bad salinity indicates conductivity issues 14:48:22 24 Feb 2017 UTC: INFO: QC.py(408): Changed (2/572) 2 367 to QC_INTERPOLATED because conductivity spikes 14:48:22 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/572) 222:227 to QC_BAD because slow apogee CT flow 14:48:22 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/572) 1:6 to QC_BAD because prior to dive start 14:48:22 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/572) 569 to QC_BAD because end of climb 14:48:22 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/572) 1:6 222:227 569:572 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:48:22 24 Feb 2017 UTC: INFO: QC.py(180): Changed (16/572) 1:6 222:227 569:572 to QC_BAD because changed corrected salin implies changed speed 14:48:23 24 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:48:23 24 Feb 2017 UTC: INFO: QC.py(180): Changed (1/572) 367 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 14:48:23 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.52 cm/s 14:48:23 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.29 cm/s 14:48:23 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:48:23 24 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (159/572) 123:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:48:23 24 Feb 2017 UTC: INFO: QC.py(180): Changed (1/572) 5 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 14:48:23 24 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (159/572) 123:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 14:48:23 24 Feb 2017 UTC: INFO: QC.py(180): Changed (1/572) 5 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 14:48:23 24 Feb 2017 UTC: INFO: QC.py(180): Changed (16/572) 1:6 222:227 569:572 to QC_BAD because changed salinity implies changed optode oxygen 14:48:23 24 Feb 2017 UTC: INFO: QC.py(180): Changed (1/572) 367 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 14:48:23 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:48:23 24 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:48:23 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 14:48:23 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 259: Data set size for profile, binned and kkyy files reduced by 16 points, a 2.80% reduction 14:48:23 24 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.259 14:48:23 24 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:48:23 24 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:48:23 24 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:48:23 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 14:48:23 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 14:50:25 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 14:50:26 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 14:50:26 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 14:50:49 24 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:50:49 24 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:50:49 24 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:50:49 24 Feb 2017 UTC /home/sg626/p6260259.log /home/sg626/p6260259.eng /home/sg626/p6260259.asc /home/sg626/p6260259.pro /home/sg626/p6260259.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 14:50:49 24 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:50:49 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:50:49 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:50:49 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:50:49 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:50:49 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:50:49 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:50:49 24 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:50:49 24 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:50:49 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:50:49 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:50:49 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:50:49 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:50:49 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:50:49 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:50:49 24 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:50:49 24 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:50:49 24 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:50:49 24 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:50:49 24 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:50:49 24 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:50:49 24 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:50:49 24 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:50:49 24 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 14:50:49 24 Feb 2017 UTC 17:55:54 24 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 21214 17:55:54 24 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:58:35 24 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 21328 17:58:35 24 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:58:35 24 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:58:35 24 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:58:35 24 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:58:35 24 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170224075834 ] 17:58:35 24 Feb 2017 UTC: INFO: Base.py(1333): PID:21336 17:58:35 24 Feb 2017 UTC: INFO: Base.py(1375): Started processing 17:58:35 24 Feb 2017 UTC 17:58:35 24 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:58:36 24 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:58:36 24 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:58:36 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:58:36 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:260 calls_made:1 call_cycle:0 17:58:36 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:58:36 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:260 calls_made:1 call_cycle:0 17:58:36 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:58:36 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:260 calls_made:1 call_cycle:0 17:58:36 24 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:260 calls_made:1 call_cycle:0 2311.9580 -15643.5180 02/24/17 17:53:53 UTC) to sdrifter@soest.hawaii.edu 17:58:36 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:260 calls_made:1 call_cycle:0 17:58:36 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:58:36 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:260 calls_made:1 call_cycle:0 17:58:36 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:58:36 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:260 calls_made:1 call_cycle:0 17:58:36 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:58:36 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:260 calls_made:1 call_cycle:0 17:58:36 24 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:58:36 24 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:58:41 24 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:58:41 24 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:58:41 24 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:58:41 24 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:58:41 24 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:58:41 24 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:58:43 24 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0260lz 17:58:43 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0260lz.x00 17:58:43 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0260lz.x01 17:58:43 24 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0260lz.r in process_file_group 17:58:43 24 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260260.log 17:58:43 24 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:58:43 24 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0260dz 17:58:43 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0260dz.x00 17:58:43 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0260dz.x01 17:58:43 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0260dz.x02 17:58:43 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0260dz.x03 17:58:43 24 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0260dz.r in process_file_group 17:58:43 24 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [260] 17:58:43 24 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [260] 17:58:43 24 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260260) for profiles 17:58:43 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:58:43 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/579) 578 579 to QC_BAD because CT out of water 17:58:43 24 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.045m) 17:58:43 24 Feb 2017 UTC: INFO: QC.py(365): Changed (4/579) 2 4 227 578 to QC_PROBABLY_BAD because raw temperature spikes 17:58:43 24 Feb 2017 UTC: INFO: QC.py(377): Changed (1/579) 579 to QC_BAD because raw salinity below bound 17:58:43 24 Feb 2017 UTC: INFO: QC.py(180): Changed (4/579) 2 4 227 578 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:58:43 24 Feb 2017 UTC: INFO: QC.py(180): Changed (1/579) 578 to QC_BAD because changed raw cond implies changed raw salinity 17:58:43 24 Feb 2017 UTC: INFO: QC.py(365): Changed (4/579) 2 4 227 578 to QC_INTERPOLATED because temperature spikes 17:58:43 24 Feb 2017 UTC: INFO: QC.py(377): Changed (1/579) 579 to QC_BAD because salinity below bound 17:58:43 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/579) 225:229 to QC_BAD because slow apogee CT flow 17:58:43 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/579) 1:6 to QC_BAD because prior to dive start 17:58:43 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/579) 1:6 225:229 578 579 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:58:43 24 Feb 2017 UTC: INFO: QC.py(180): Changed (13/579) 1:6 225:229 578 579 to QC_BAD because changed corrected salin implies changed speed 17:58:44 24 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:58:44 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.71 cm/s 17:58:44 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.26 cm/s 17:58:44 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:58:44 24 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/579) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:58:44 24 Feb 2017 UTC: INFO: QC.py(180): Changed (3/579) 2 4 578 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:58:44 24 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/579) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:58:44 24 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/579) 9 to QC_BAD because bad aa4330 oyxgen 17:58:44 24 Feb 2017 UTC: INFO: QC.py(180): Changed (3/579) 2 4 578 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:58:44 24 Feb 2017 UTC: INFO: QC.py(180): Changed (13/579) 1:6 225:229 578 579 to QC_BAD because changed salinity implies changed optode oxygen 17:58:44 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:58:44 24 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:58:44 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:58:44 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 260: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.25% reduction 17:58:44 24 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.260 17:58:44 24 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:58:44 24 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:58:44 24 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:58:44 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:58:44 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 18:00:46 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 18:00:47 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 18:00:47 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 18:01:09 24 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:01:09 24 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:01:09 24 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:01:09 24 Feb 2017 UTC /home/sg626/p6260260.log /home/sg626/p6260260.eng /home/sg626/p6260260.asc /home/sg626/p6260260.pro /home/sg626/p6260260.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 18:01:09 24 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:01:09 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:01:09 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:01:09 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:01:09 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:01:09 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:01:09 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:01:09 24 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:01:09 24 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:01:09 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:01:09 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:01:09 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:01:09 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:01:09 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:01:09 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:01:09 24 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:01:09 24 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 18:01:09 24 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 18:01:09 24 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 18:01:09 24 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 18:01:09 24 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:01:09 24 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:01:09 24 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:01:09 24 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 18:01:09 24 Feb 2017 UTC 21:07:39 24 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 26682 21:07:39 24 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:10:22 24 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 26978 21:10:22 24 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:10:22 24 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:10:22 24 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:10:22 24 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:10:22 24 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170224111021 ] 21:10:22 24 Feb 2017 UTC: INFO: Base.py(1333): PID:26985 21:10:22 24 Feb 2017 UTC: INFO: Base.py(1375): Started processing 21:10:22 24 Feb 2017 UTC 21:10:22 24 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:10:22 24 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:10:22 24 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:10:22 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:10:22 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:261 calls_made:2 call_cycle:0 21:10:22 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:10:22 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:261 calls_made:2 call_cycle:0 21:10:22 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:10:22 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:261 calls_made:2 call_cycle:0 21:10:22 24 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:261 calls_made:2 call_cycle:0 2312.4810 -15644.3050 02/24/17 21:03:17 UTC) to sdrifter@soest.hawaii.edu 21:10:23 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:261 calls_made:2 call_cycle:0 21:10:23 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:10:23 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:261 calls_made:2 call_cycle:0 21:10:23 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:10:23 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:261 calls_made:2 call_cycle:0 21:10:23 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:10:23 24 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:261 calls_made:2 call_cycle:0 21:10:23 24 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:10:23 24 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:10:27 24 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:10:28 24 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:10:28 24 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:10:28 24 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:10:28 24 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:10:28 24 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:10:29 24 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0261lz 21:10:29 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0261lz.x00 21:10:29 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0261lz.x01 21:10:29 24 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0261lz.r in process_file_group 21:10:29 24 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260261.log 21:10:29 24 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:10:29 24 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0261dz 21:10:29 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0261dz.x00 21:10:29 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0261dz.x01 21:10:29 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0261dz.x02 21:10:29 24 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0261dz.x03 21:10:29 24 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0261dz.r in process_file_group 21:10:29 24 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [261] 21:10:29 24 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [261] 21:10:29 24 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260261) for profiles 21:10:29 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:10:30 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/579) 578 to QC_BAD because CT out of water 21:10:30 24 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.142m) 21:10:30 24 Feb 2017 UTC: INFO: QC.py(365): Changed (3/579) 2 4 578 to QC_PROBABLY_BAD because raw temperature spikes 21:10:30 24 Feb 2017 UTC: INFO: QC.py(377): Changed (1/579) 578 to QC_BAD because raw salinity below bound 21:10:30 24 Feb 2017 UTC: INFO: QC.py(408): Changed (1/579) 227 to QC_PROBABLY_BAD because raw conductivity spikes 21:10:30 24 Feb 2017 UTC: INFO: QC.py(180): Changed (2/579) 2 4 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:10:30 24 Feb 2017 UTC: INFO: QC.py(180): Changed (1/579) 227 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 21:10:30 24 Feb 2017 UTC: INFO: QC.py(365): Changed (3/579) 2 4 578 to QC_INTERPOLATED because temperature spikes 21:10:30 24 Feb 2017 UTC: INFO: QC.py(377): Changed (1/579) 578 to QC_BAD because salinity below bound 21:10:30 24 Feb 2017 UTC: INFO: QC.py(408): Changed (1/579) 227 to QC_INTERPOLATED because conductivity spikes 21:10:30 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/579) 225:230 to QC_BAD because slow apogee CT flow 21:10:30 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/579) 1:6 to QC_BAD because prior to dive start 21:10:30 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/579) 577 579 to QC_BAD because end of climb 21:10:30 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/579) 1:6 225:230 577:579 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:10:30 24 Feb 2017 UTC: INFO: QC.py(180): Changed (15/579) 1:6 225:230 577:579 to QC_BAD because changed corrected salin implies changed speed 21:10:30 24 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:10:30 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.61 cm/s 21:10:30 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.44 cm/s 21:10:30 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:10:30 24 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/579) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:10:30 24 Feb 2017 UTC: INFO: QC.py(180): Changed (3/579) 2 4 578 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:10:30 24 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/579) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:10:30 24 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (3/579) 577:579 to QC_BAD because bad aa4330 oyxgen 21:10:30 24 Feb 2017 UTC: INFO: QC.py(180): Changed (2/579) 2 4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:10:30 24 Feb 2017 UTC: INFO: QC.py(180): Changed (12/579) 1:6 225:230 to QC_BAD because changed salinity implies changed optode oxygen 21:10:30 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:10:30 24 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:10:30 24 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:10:31 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 261: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.59% reduction 21:10:31 24 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.261 21:10:31 24 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:10:31 24 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:10:31 24 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:10:31 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:10:31 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 21:12:34 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 21:12:35 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 21:12:35 24 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 21:12:58 24 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:12:58 24 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:12:58 24 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:12:58 24 Feb 2017 UTC /home/sg626/p6260261.log /home/sg626/p6260261.eng /home/sg626/p6260261.asc /home/sg626/p6260261.pro /home/sg626/p6260261.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 21:12:58 24 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:12:58 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:12:58 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:12:58 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:12:58 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:12:58 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:12:58 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:12:58 24 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:12:58 24 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:12:58 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:12:58 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:12:58 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:12:58 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:12:58 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:12:58 24 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:12:58 24 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:12:58 24 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:12:58 24 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:12:58 24 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:12:58 24 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:12:58 24 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:12:58 24 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:12:58 24 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:12:58 24 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 21:12:58 24 Feb 2017 UTC 00:19:10 25 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 32209 00:19:10 25 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:21:59 25 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 32396 00:21:59 25 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:21:59 25 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:21:59 25 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:21:59 25 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:21:59 25 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170224142158 ] 00:21:59 25 Feb 2017 UTC: INFO: Base.py(1333): PID:32411 00:21:59 25 Feb 2017 UTC: INFO: Base.py(1375): Started processing 00:21:59 25 Feb 2017 UTC 00:21:59 25 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:22:00 25 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:22:00 25 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:22:00 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:22:00 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:262 calls_made:1 call_cycle:0 00:22:00 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:22:00 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:262 calls_made:1 call_cycle:0 00:22:00 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:22:00 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:262 calls_made:1 call_cycle:0 00:22:00 25 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:262 calls_made:1 call_cycle:0 2312.6390 -15644.8780 02/25/17 00:17:00 UTC) to sdrifter@soest.hawaii.edu 00:22:00 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:262 calls_made:1 call_cycle:0 00:22:00 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:22:00 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:262 calls_made:1 call_cycle:0 00:22:00 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:22:00 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:262 calls_made:1 call_cycle:0 00:22:00 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:22:00 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:262 calls_made:1 call_cycle:0 00:22:00 25 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:22:00 25 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:22:04 25 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:22:05 25 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:22:05 25 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:22:05 25 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:22:05 25 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:22:05 25 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:22:06 25 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0262lz 00:22:06 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0262lz.x00 00:22:06 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0262lz.x01 00:22:06 25 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0262lz.r in process_file_group 00:22:06 25 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260262.log 00:22:06 25 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:22:06 25 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0262dz 00:22:06 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0262dz.x00 00:22:06 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0262dz.x01 00:22:06 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0262dz.x02 00:22:06 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0262dz.x03 00:22:06 25 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0262dz.r in process_file_group 00:22:06 25 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [262] 00:22:06 25 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [262] 00:22:07 25 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260262) for profiles 00:22:07 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 00:22:07 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/579) 577 579 to QC_BAD because CT out of water 00:22:07 25 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.066m) 00:22:07 25 Feb 2017 UTC: INFO: QC.py(365): Changed (2/579) 3 578 to QC_PROBABLY_BAD because raw temperature spikes 00:22:07 25 Feb 2017 UTC: INFO: QC.py(377): Changed (1/579) 579 to QC_BAD because raw salinity below bound 00:22:07 25 Feb 2017 UTC: INFO: QC.py(180): Changed (2/579) 3 578 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:22:07 25 Feb 2017 UTC: INFO: QC.py(180): Changed (1/579) 577 to QC_BAD because changed raw cond implies changed raw salinity 00:22:07 25 Feb 2017 UTC: INFO: QC.py(365): Changed (2/579) 3 578 to QC_INTERPOLATED because temperature spikes 00:22:07 25 Feb 2017 UTC: INFO: QC.py(377): Changed (1/579) 579 to QC_BAD because salinity below bound 00:22:07 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/579) 228:233 to QC_BAD because slow apogee CT flow 00:22:07 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/579) 1:6 to QC_BAD because prior to dive start 00:22:07 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/579) 576 578 to QC_BAD because end of climb 00:22:07 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/579) 1:6 228:233 576:579 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:22:07 25 Feb 2017 UTC: INFO: QC.py(180): Changed (16/579) 1:6 228:233 576:579 to QC_BAD because changed corrected salin implies changed speed 00:22:07 25 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:22:07 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.14 cm/s 00:22:07 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.23 cm/s 00:22:07 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:22:07 25 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (164/579) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:22:07 25 Feb 2017 UTC: INFO: QC.py(180): Changed (2/579) 3 578 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:22:07 25 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (164/579) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 00:22:07 25 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/579) 575 578 to QC_BAD because bad aa4330 oyxgen 00:22:07 25 Feb 2017 UTC: INFO: QC.py(180): Changed (1/579) 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:22:07 25 Feb 2017 UTC: INFO: QC.py(180): Changed (15/579) 1:6 228:233 576 577 579 to QC_BAD because changed salinity implies changed optode oxygen 00:22:07 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:22:07 25 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:22:07 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 00:22:08 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 262: Data set size for profile, binned and kkyy files reduced by 16 points, a 2.76% reduction 00:22:08 25 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.262 00:22:08 25 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:22:08 25 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:22:08 25 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:22:08 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 00:22:08 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 00:24:11 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 00:24:12 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 00:24:12 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 00:24:35 25 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:24:35 25 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:24:35 25 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:24:35 25 Feb 2017 UTC /home/sg626/p6260262.log /home/sg626/p6260262.eng /home/sg626/p6260262.asc /home/sg626/p6260262.pro /home/sg626/p6260262.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 00:24:35 25 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:24:35 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:24:35 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:24:35 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:24:35 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:24:35 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:24:35 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:24:35 25 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:24:35 25 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:24:35 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:24:35 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:24:35 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:24:35 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:24:35 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:24:35 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:24:35 25 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:24:35 25 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:24:35 25 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:24:35 25 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:24:35 25 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:24:35 25 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:24:35 25 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:24:35 25 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:24:35 25 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 00:24:35 25 Feb 2017 UTC 03:32:50 25 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 5469 03:32:50 25 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:35:49 25 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 5584 03:35:49 25 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:35:49 25 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:35:49 25 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:35:49 25 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:35:49 25 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170224173548 ] 03:35:49 25 Feb 2017 UTC: INFO: Base.py(1333): PID:5592 03:35:49 25 Feb 2017 UTC: INFO: Base.py(1375): Started processing 03:35:49 25 Feb 2017 UTC 03:35:49 25 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:35:50 25 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:35:50 25 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:35:50 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:35:50 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:263 calls_made:1 call_cycle:0 03:35:50 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:35:50 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:263 calls_made:1 call_cycle:0 03:35:50 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:35:50 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:263 calls_made:1 call_cycle:0 03:35:50 25 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:263 calls_made:1 call_cycle:0 2312.3320 -15645.2270 02/25/17 03:30:50 UTC) to sdrifter@soest.hawaii.edu 03:35:50 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:263 calls_made:1 call_cycle:0 03:35:50 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:35:50 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:263 calls_made:1 call_cycle:0 03:35:50 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:35:50 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:263 calls_made:1 call_cycle:0 03:35:50 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:35:50 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:263 calls_made:1 call_cycle:0 03:35:50 25 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:35:50 25 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:35:55 25 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:35:55 25 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:35:55 25 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:35:55 25 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:35:56 25 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:35:56 25 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:35:57 25 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0263lz 03:35:57 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0263lz.x00 03:35:57 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0263lz.x01 03:35:57 25 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0263lz.r in process_file_group 03:35:57 25 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260263.log 03:35:57 25 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:35:57 25 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0263dz 03:35:57 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0263dz.x00 03:35:57 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0263dz.x01 03:35:57 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0263dz.x02 03:35:57 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0263dz.x03 03:35:57 25 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0263dz.r in process_file_group 03:35:57 25 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [263] 03:35:57 25 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [263] 03:35:57 25 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260263) for profiles 03:35:57 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 03:35:57 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/590) 588 590 to QC_BAD because CT out of water 03:35:57 25 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.118m) 03:35:57 25 Feb 2017 UTC: INFO: QC.py(365): Changed (1/590) 588 to QC_PROBABLY_BAD because raw temperature spikes 03:35:57 25 Feb 2017 UTC: INFO: QC.py(377): Changed (2/590) 588 590 to QC_BAD because raw salinity below bound 03:35:57 25 Feb 2017 UTC: INFO: QC.py(365): Changed (1/590) 588 to QC_INTERPOLATED because temperature spikes 03:35:57 25 Feb 2017 UTC: INFO: QC.py(377): Changed (2/590) 588 590 to QC_BAD because salinity below bound 03:35:57 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/590) 229:234 to QC_BAD because slow apogee CT flow 03:35:57 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/590) 1:6 to QC_BAD because prior to dive start 03:35:57 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/590) 587 589 to QC_BAD because end of climb 03:35:57 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/590) 1:6 229:234 587:590 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:35:57 25 Feb 2017 UTC: INFO: QC.py(180): Changed (16/590) 1:6 229:234 587:590 to QC_BAD because changed corrected salin implies changed speed 03:35:58 25 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 03:35:58 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.06 cm/s 03:35:58 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.31 cm/s 03:35:58 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:35:58 25 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (165/590) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:35:58 25 Feb 2017 UTC: INFO: QC.py(180): Changed (1/590) 588 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:35:58 25 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (165/590) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 03:35:58 25 Feb 2017 UTC: INFO: QC.py(180): Changed (1/590) 588 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 03:35:58 25 Feb 2017 UTC: INFO: QC.py(180): Changed (16/590) 1:6 229:234 587:590 to QC_BAD because changed salinity implies changed optode oxygen 03:35:58 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:35:58 25 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:35:58 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 03:35:58 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 263: Data set size for profile, binned and kkyy files reduced by 16 points, a 2.71% reduction 03:35:58 25 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.263 03:35:58 25 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:35:58 25 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:35:58 25 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:35:59 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 03:35:59 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 03:38:02 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 03:38:03 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 03:38:03 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 03:38:26 25 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:38:26 25 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:38:26 25 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:38:26 25 Feb 2017 UTC /home/sg626/p6260263.log /home/sg626/p6260263.eng /home/sg626/p6260263.asc /home/sg626/p6260263.pro /home/sg626/p6260263.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 03:38:26 25 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:38:26 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:38:26 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:38:26 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:38:26 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:38:26 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:38:26 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:38:26 25 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:38:26 25 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:38:26 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:38:26 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:38:26 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:38:26 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:38:26 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:38:26 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:38:26 25 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:38:26 25 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:38:26 25 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:38:26 25 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:38:26 25 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:38:26 25 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:38:26 25 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:38:26 25 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:38:26 25 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 03:38:26 25 Feb 2017 UTC 06:44:25 25 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 10924 06:44:25 25 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:47:10 25 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 11045 06:47:10 25 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:47:10 25 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 06:47:10 25 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 06:47:10 25 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:47:10 25 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170224204709 ] 06:47:10 25 Feb 2017 UTC: INFO: Base.py(1333): PID:11052 06:47:10 25 Feb 2017 UTC: INFO: Base.py(1375): Started processing 06:47:10 25 Feb 2017 UTC 06:47:10 25 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 06:47:11 25 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 06:47:11 25 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:47:11 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:47:11 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:264 calls_made:1 call_cycle:0 06:47:11 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:47:11 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:264 calls_made:1 call_cycle:0 06:47:11 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:47:11 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:264 calls_made:1 call_cycle:0 06:47:11 25 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:264 calls_made:1 call_cycle:0 2312.1620 -15645.5730 02/25/17 06:42:18 UTC) to sdrifter@soest.hawaii.edu 06:47:11 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:264 calls_made:1 call_cycle:0 06:47:11 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:47:11 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:264 calls_made:1 call_cycle:0 06:47:11 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:47:11 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:264 calls_made:1 call_cycle:0 06:47:11 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:47:11 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:264 calls_made:1 call_cycle:0 06:47:11 25 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:47:11 25 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:47:16 25 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:47:16 25 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:47:16 25 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 06:47:16 25 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:47:16 25 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:47:16 25 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 06:47:18 25 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0264lz 06:47:18 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0264lz.x00 06:47:18 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0264lz.x01 06:47:18 25 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0264lz.r in process_file_group 06:47:18 25 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260264.log 06:47:18 25 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 06:47:18 25 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0264dz 06:47:18 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0264dz.x00 06:47:18 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0264dz.x01 06:47:18 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0264dz.x02 06:47:18 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0264dz.x03 06:47:18 25 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0264dz.r in process_file_group 06:47:18 25 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [264] 06:47:18 25 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [264] 06:47:18 25 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260264) for profiles 06:47:18 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 06:47:18 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/580) 580 to QC_BAD because CT out of water 06:47:18 25 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.041m) 06:47:18 25 Feb 2017 UTC: INFO: QC.py(365): Changed (2/580) 4 232 to QC_PROBABLY_BAD because raw temperature spikes 06:47:18 25 Feb 2017 UTC: INFO: QC.py(180): Changed (2/580) 4 232 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 06:47:18 25 Feb 2017 UTC: INFO: QC.py(180): Changed (1/580) 580 to QC_BAD because changed raw cond implies changed raw salinity 06:47:18 25 Feb 2017 UTC: INFO: QC.py(365): Changed (2/580) 4 232 to QC_INTERPOLATED because temperature spikes 06:47:18 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/580) 230:235 to QC_BAD because slow apogee CT flow 06:47:18 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/580) 1:7 to QC_BAD because prior to dive start 06:47:18 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/580) 1:7 230:235 580 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 06:47:18 25 Feb 2017 UTC: INFO: QC.py(180): Changed (14/580) 1:7 230:235 580 to QC_BAD because changed corrected salin implies changed speed 06:47:19 25 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 06:47:19 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.17 cm/s 06:47:19 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.97 cm/s 06:47:19 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 06:47:19 25 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/580) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 06:47:19 25 Feb 2017 UTC: INFO: QC.py(180): Changed (1/580) 4 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 06:47:19 25 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/580) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 06:47:19 25 Feb 2017 UTC: INFO: QC.py(180): Changed (1/580) 4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 06:47:19 25 Feb 2017 UTC: INFO: QC.py(180): Changed (14/580) 1:7 230:235 580 to QC_BAD because changed salinity implies changed optode oxygen 06:47:19 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 06:47:19 25 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 06:47:19 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 06:47:19 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 264: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.41% reduction 06:47:19 25 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.264 06:47:19 25 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:47:19 25 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:47:19 25 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:47:20 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 06:47:20 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 06:49:24 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 06:49:25 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 06:49:25 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 06:49:48 25 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:49:48 25 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:49:48 25 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 06:49:48 25 Feb 2017 UTC /home/sg626/p6260264.log /home/sg626/p6260264.eng /home/sg626/p6260264.asc /home/sg626/p6260264.pro /home/sg626/p6260264.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 06:49:48 25 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:49:48 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:49:48 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:49:48 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:49:48 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:49:48 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:49:48 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:49:48 25 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:49:48 25 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:49:48 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:49:48 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:49:48 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:49:48 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:49:48 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:49:48 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:49:48 25 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:49:48 25 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 06:49:48 25 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 06:49:48 25 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 06:49:48 25 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 06:49:48 25 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:49:48 25 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:49:48 25 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:49:48 25 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 06:49:48 25 Feb 2017 UTC 09:46:47 25 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 16168 09:46:47 25 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:49:32 25 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 16222 09:49:32 25 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:49:32 25 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:49:32 25 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:49:32 25 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:49:32 25 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170224234932 ] 09:49:32 25 Feb 2017 UTC: INFO: Base.py(1333): PID:16230 09:49:32 25 Feb 2017 UTC: INFO: Base.py(1375): Started processing 09:49:32 25 Feb 2017 UTC 09:49:32 25 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:49:33 25 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:49:33 25 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:49:33 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:49:33 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:265 calls_made:1 call_cycle:0 09:49:33 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:49:33 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:265 calls_made:1 call_cycle:0 09:49:33 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:49:33 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:265 calls_made:1 call_cycle:0 09:49:33 25 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:265 calls_made:1 call_cycle:0 2312.1840 -15645.7320 02/25/17 09:44:43 UTC) to sdrifter@soest.hawaii.edu 09:49:33 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:265 calls_made:1 call_cycle:0 09:49:33 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:49:33 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:265 calls_made:1 call_cycle:0 09:49:33 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:49:33 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:265 calls_made:1 call_cycle:0 09:49:33 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:49:33 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:265 calls_made:1 call_cycle:0 09:49:33 25 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:49:33 25 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:49:38 25 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:49:39 25 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:49:39 25 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:49:39 25 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:49:39 25 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:49:39 25 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:49:40 25 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0265lz 09:49:40 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0265lz.x00 09:49:40 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0265lz.x01 09:49:40 25 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0265lz.r in process_file_group 09:49:40 25 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260265.log 09:49:40 25 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:49:40 25 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0265dz 09:49:40 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0265dz.x00 09:49:40 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0265dz.x01 09:49:40 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0265dz.x02 09:49:40 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0265dz.x03 09:49:40 25 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0265dz.r in process_file_group 09:49:40 25 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [265] 09:49:40 25 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [265] 09:49:40 25 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260265) for profiles 09:49:40 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 09:49:40 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/542) 541 542 to QC_BAD because CT out of water 09:49:40 25 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.146m) 09:49:41 25 Feb 2017 UTC: INFO: QC.py(377): Changed (1/542) 542 to QC_BAD because raw salinity below bound 09:49:41 25 Feb 2017 UTC: INFO: QC.py(180): Changed (1/542) 541 to QC_BAD because changed raw cond implies changed raw salinity 09:49:41 25 Feb 2017 UTC: INFO: QC.py(377): Changed (1/542) 542 to QC_BAD because salinity below bound 09:49:41 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/542) 230:235 to QC_BAD because slow apogee CT flow 09:49:41 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/542) 1:7 to QC_BAD because prior to dive start 09:49:41 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/542) 540 to QC_BAD because end of climb 09:49:41 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/542) 1:7 230:235 540:542 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:49:41 25 Feb 2017 UTC: INFO: QC.py(180): Changed (16/542) 1:7 230:235 540:542 to QC_BAD because changed corrected salin implies changed speed 09:49:41 25 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:49:41 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.50 cm/s 09:49:41 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.74 cm/s 09:49:41 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:49:41 25 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (158/542) 130 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:49:41 25 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (158/542) 130 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 09:49:41 25 Feb 2017 UTC: INFO: QC.py(180): Changed (16/542) 1:7 230:235 540:542 to QC_BAD because changed salinity implies changed optode oxygen 09:49:41 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:49:41 25 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:49:41 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 09:49:41 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 265: Data set size for profile, binned and kkyy files reduced by 16 points, a 2.95% reduction 09:49:42 25 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.265 09:49:42 25 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:49:42 25 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:49:42 25 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:49:42 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 09:49:42 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 09:51:47 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 09:51:48 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 09:51:48 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 09:52:12 25 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:52:12 25 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:52:12 25 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:52:12 25 Feb 2017 UTC /home/sg626/p6260265.log /home/sg626/p6260265.eng /home/sg626/p6260265.asc /home/sg626/p6260265.pro /home/sg626/p6260265.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 09:52:12 25 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:52:12 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:52:12 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:52:12 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:52:12 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:52:12 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:52:12 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:52:12 25 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:52:12 25 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:52:12 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:52:12 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:52:12 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:52:12 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:52:12 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:52:12 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:52:12 25 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:52:12 25 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:52:12 25 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:52:12 25 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:52:12 25 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:52:12 25 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:52:12 25 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:52:12 25 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:52:12 25 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 09:52:12 25 Feb 2017 UTC 12:58:07 25 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 21711 12:58:07 25 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:01:19 25 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 22005 13:01:19 25 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:01:19 25 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:01:19 25 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:01:19 25 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:01:19 25 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170225030118 ] 13:01:19 25 Feb 2017 UTC: INFO: Base.py(1333): PID:22013 13:01:19 25 Feb 2017 UTC: INFO: Base.py(1375): Started processing 13:01:19 25 Feb 2017 UTC 13:01:19 25 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:01:20 25 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:01:20 25 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:01:20 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:01:20 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:266 calls_made:1 call_cycle:0 13:01:20 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:01:20 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:266 calls_made:1 call_cycle:0 13:01:20 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:01:20 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:266 calls_made:1 call_cycle:0 13:01:20 25 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:266 calls_made:1 call_cycle:0 2312.5350 -15645.7650 02/25/17 12:56:00 UTC) to sdrifter@soest.hawaii.edu 13:01:20 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:266 calls_made:1 call_cycle:0 13:01:20 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:01:20 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:266 calls_made:1 call_cycle:0 13:01:20 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:01:20 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:266 calls_made:1 call_cycle:0 13:01:20 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:01:20 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:266 calls_made:1 call_cycle:0 13:01:20 25 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:01:20 25 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:01:24 25 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:01:25 25 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:01:25 25 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:01:25 25 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:01:25 25 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:01:25 25 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:01:26 25 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0266lz 13:01:26 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0266lz.x00 13:01:26 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0266lz.x01 13:01:26 25 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0266lz.r in process_file_group 13:01:26 25 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260266.log 13:01:26 25 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:01:26 25 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0266dz 13:01:26 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0266dz.x00 13:01:26 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0266dz.x01 13:01:26 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0266dz.x02 13:01:26 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0266dz.x03 13:01:26 25 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0266dz.r in process_file_group 13:01:27 25 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [266] 13:01:27 25 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [266] 13:01:27 25 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260266) for profiles 13:01:27 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:01:27 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/581) 581 to QC_BAD because CT out of water 13:01:27 25 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.046m) 13:01:27 25 Feb 2017 UTC: INFO: QC.py(365): Changed (1/581) 230 to QC_PROBABLY_BAD because raw temperature spikes 13:01:27 25 Feb 2017 UTC: INFO: QC.py(180): Changed (1/581) 230 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:01:27 25 Feb 2017 UTC: INFO: QC.py(180): Changed (1/581) 581 to QC_BAD because changed raw cond implies changed raw salinity 13:01:27 25 Feb 2017 UTC: INFO: QC.py(365): Changed (1/581) 230 to QC_INTERPOLATED because temperature spikes 13:01:27 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/581) 228:233 to QC_BAD because slow apogee CT flow 13:01:27 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/581) 1:6 to QC_BAD because prior to dive start 13:01:27 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/581) 1:6 228:233 581 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:01:27 25 Feb 2017 UTC: INFO: QC.py(180): Changed (13/581) 1:6 228:233 581 to QC_BAD because changed corrected salin implies changed speed 13:01:28 25 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:01:28 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.50 cm/s 13:01:28 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.27 cm/s 13:01:28 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:01:28 25 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (162/581) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:01:28 25 Feb 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/581) 580 to QC_BAD because slow flow in SBE43 13:01:28 25 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (162/581) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:01:28 25 Feb 2017 UTC: INFO: QC.py(180): Changed (13/581) 1:6 228:233 581 to QC_BAD because changed salinity implies changed optode oxygen 13:01:28 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:01:28 25 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:01:28 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:01:28 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 266: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.24% reduction 13:01:28 25 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.266 13:01:28 25 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:01:28 25 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:01:28 25 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:01:28 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:01:28 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:03:33 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 13:03:34 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:03:34 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:03:58 25 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:03:58 25 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:03:58 25 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:03:58 25 Feb 2017 UTC /home/sg626/p6260266.log /home/sg626/p6260266.eng /home/sg626/p6260266.asc /home/sg626/p6260266.pro /home/sg626/p6260266.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:03:58 25 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:03:58 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:03:58 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:03:58 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:03:58 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:03:58 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:03:58 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:03:58 25 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:03:58 25 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:03:58 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:03:58 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:03:58 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:03:58 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:03:58 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:03:58 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:03:58 25 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:03:58 25 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:03:58 25 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:03:58 25 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:03:58 25 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:03:58 25 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:03:58 25 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:03:58 25 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:03:58 25 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 13:03:58 25 Feb 2017 UTC 15:59:23 25 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 26914 15:59:23 25 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:02:07 25 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 27354 16:02:07 25 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:02:07 25 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:02:07 25 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:02:07 25 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:02:07 25 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170225060207 ] 16:02:07 25 Feb 2017 UTC: INFO: Base.py(1333): PID:27361 16:02:08 25 Feb 2017 UTC: INFO: Base.py(1375): Started processing 16:02:08 25 Feb 2017 UTC 16:02:08 25 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:02:08 25 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:02:08 25 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:02:08 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:02:08 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:267 calls_made:1 call_cycle:0 16:02:08 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:02:08 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:267 calls_made:1 call_cycle:0 16:02:08 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:02:08 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:267 calls_made:1 call_cycle:0 16:02:08 25 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:267 calls_made:1 call_cycle:0 2311.7010 -15646.4070 02/25/17 15:57:19 UTC) to sdrifter@soest.hawaii.edu 16:02:08 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:267 calls_made:1 call_cycle:0 16:02:08 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:02:08 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:267 calls_made:1 call_cycle:0 16:02:08 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:02:08 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:267 calls_made:1 call_cycle:0 16:02:08 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:02:08 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:267 calls_made:1 call_cycle:0 16:02:08 25 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:02:08 25 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:02:13 25 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:02:14 25 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:02:14 25 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:02:14 25 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:02:14 25 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:02:14 25 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:02:15 25 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0267lz 16:02:15 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0267lz.x00 16:02:15 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0267lz.x01 16:02:15 25 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0267lz.r in process_file_group 16:02:15 25 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260267.log 16:02:15 25 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:02:15 25 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0267dz 16:02:15 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0267dz.x00 16:02:15 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0267dz.x01 16:02:15 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0267dz.x02 16:02:15 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0267dz.x03 16:02:15 25 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0267dz.r in process_file_group 16:02:15 25 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [267] 16:02:15 25 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [267] 16:02:16 25 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260267) for profiles 16:02:16 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:02:16 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/543) 542 543 to QC_BAD because CT out of water 16:02:16 25 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.079m) 16:02:16 25 Feb 2017 UTC: INFO: QC.py(365): Changed (1/543) 542 to QC_PROBABLY_BAD because raw temperature spikes 16:02:16 25 Feb 2017 UTC: INFO: QC.py(377): Changed (1/543) 542 to QC_BAD because raw salinity below bound 16:02:16 25 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <175 pt uncorrectable 911.3m SUSPECT weak conductivity anomaly n:-0.28 p:0.29> 16:02:16 25 Feb 2017 UTC: INFO: QC.py(180): Changed (1/543) 543 to QC_BAD because changed raw cond implies changed raw salinity 16:02:16 25 Feb 2017 UTC: INFO: QC.py(365): Changed (1/543) 542 to QC_INTERPOLATED because temperature spikes 16:02:16 25 Feb 2017 UTC: INFO: QC.py(377): Changed (1/543) 542 to QC_BAD because salinity below bound 16:02:16 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/543) 229:234 to QC_BAD because slow apogee CT flow 16:02:16 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/543) 1:6 to QC_BAD because prior to dive start 16:02:16 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/543) 1:6 229:234 542 543 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:02:16 25 Feb 2017 UTC: INFO: QC.py(180): Changed (14/543) 1:6 229:234 542 543 to QC_BAD because changed corrected salin implies changed speed 16:02:16 25 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:02:16 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.42 cm/s 16:02:16 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.14 cm/s 16:02:16 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:02:16 25 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (155/543) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:02:16 25 Feb 2017 UTC: INFO: QC.py(180): Changed (1/543) 542 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:02:16 25 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (155/543) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:02:16 25 Feb 2017 UTC: INFO: QC.py(180): Changed (1/543) 542 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:02:16 25 Feb 2017 UTC: INFO: QC.py(180): Changed (14/543) 1:6 229:234 542 543 to QC_BAD because changed salinity implies changed optode oxygen 16:02:16 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:02:16 25 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:02:16 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:02:17 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 267: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.58% reduction 16:02:17 25 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.267 16:02:17 25 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:02:17 25 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:02:17 25 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:02:17 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:02:17 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:04:23 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 16:04:24 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:04:24 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:04:48 25 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:04:48 25 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:04:48 25 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:04:48 25 Feb 2017 UTC /home/sg626/p6260267.log /home/sg626/p6260267.eng /home/sg626/p6260267.asc /home/sg626/p6260267.pro /home/sg626/p6260267.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:04:48 25 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:04:48 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:04:48 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:04:48 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:04:48 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:04:48 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:04:48 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:04:48 25 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:04:48 25 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:04:48 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:04:48 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:04:48 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:04:48 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:04:48 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:04:48 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:04:48 25 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:04:48 25 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:04:48 25 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:04:48 25 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:04:48 25 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:04:48 25 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:04:48 25 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:04:48 25 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:04:48 25 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 16:04:48 25 Feb 2017 UTC 19:08:01 25 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 32623 19:08:01 25 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:10:48 25 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 458 19:10:48 25 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:10:48 25 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:10:48 25 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:10:48 25 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:10:48 25 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170225091047 ] 19:10:48 25 Feb 2017 UTC: INFO: Base.py(1333): PID:465 19:10:48 25 Feb 2017 UTC: INFO: Base.py(1375): Started processing 19:10:48 25 Feb 2017 UTC 19:10:48 25 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:10:49 25 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:10:49 25 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:10:49 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:10:49 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:268 calls_made:1 call_cycle:0 19:10:49 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:10:49 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:268 calls_made:1 call_cycle:0 19:10:49 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:10:49 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:268 calls_made:1 call_cycle:0 19:10:49 25 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:268 calls_made:1 call_cycle:0 2311.0850 -15646.9790 02/25/17 19:05:54 UTC) to sdrifter@soest.hawaii.edu 19:10:49 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:268 calls_made:1 call_cycle:0 19:10:49 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:10:49 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:268 calls_made:1 call_cycle:0 19:10:49 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:10:49 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:268 calls_made:1 call_cycle:0 19:10:49 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:10:49 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:268 calls_made:1 call_cycle:0 19:10:49 25 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:10:49 25 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:10:53 25 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:10:54 25 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:10:54 25 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:10:54 25 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:10:54 25 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:10:54 25 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:10:55 25 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0268lz 19:10:55 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0268lz.x00 19:10:55 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0268lz.x01 19:10:55 25 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0268lz.r in process_file_group 19:10:55 25 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260268.log 19:10:55 25 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:10:55 25 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0268dz 19:10:55 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0268dz.x00 19:10:55 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0268dz.x01 19:10:55 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0268dz.x02 19:10:55 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0268dz.x03 19:10:55 25 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0268dz.r in process_file_group 19:10:56 25 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [268] 19:10:56 25 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [268] 19:10:56 25 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260268) for profiles 19:10:56 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 19:10:56 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/559) 558 559 to QC_BAD because CT out of water 19:10:56 25 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.102m) 19:10:56 25 Feb 2017 UTC: INFO: QC.py(365): Changed (3/559) 4 5 558 to QC_PROBABLY_BAD because raw temperature spikes 19:10:56 25 Feb 2017 UTC: INFO: QC.py(377): Changed (1/559) 558 to QC_BAD because raw salinity below bound 19:10:56 25 Feb 2017 UTC: INFO: QC.py(408): Changed (1/559) 5 to QC_PROBABLY_BAD because raw conductivity spikes 19:10:56 25 Feb 2017 UTC: INFO: QC.py(180): Changed (2/559) 4 5 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:10:56 25 Feb 2017 UTC: INFO: QC.py(180): Changed (1/559) 559 to QC_BAD because changed raw cond implies changed raw salinity 19:10:56 25 Feb 2017 UTC: INFO: QC.py(365): Changed (3/559) 4 5 558 to QC_INTERPOLATED because temperature spikes 19:10:56 25 Feb 2017 UTC: INFO: QC.py(377): Changed (1/559) 558 to QC_BAD because salinity below bound 19:10:56 25 Feb 2017 UTC: INFO: QC.py(408): Changed (1/559) 5 to QC_INTERPOLATED because conductivity spikes 19:10:56 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/559) 225:230 to QC_BAD because slow apogee CT flow 19:10:56 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/559) 1:7 to QC_BAD because prior to dive start 19:10:56 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/559) 1:7 225:230 558 559 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:10:56 25 Feb 2017 UTC: INFO: QC.py(180): Changed (15/559) 1:7 225:230 558 559 to QC_BAD because changed corrected salin implies changed speed 19:10:57 25 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:10:57 25 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 268 interp_salinity data_points in_between 341 350 % suspect thermal-inertia points 345 19:10:57 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.10 cm/s 19:10:57 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.89 cm/s 19:10:57 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:10:57 25 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/559) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:10:57 25 Feb 2017 UTC: INFO: QC.py(180): Changed (3/559) 4 5 558 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 19:10:57 25 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/559) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 19:10:57 25 Feb 2017 UTC: INFO: QC.py(180): Changed (3/559) 4 5 558 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 19:10:57 25 Feb 2017 UTC: INFO: QC.py(180): Changed (15/559) 1:7 225:230 558 559 to QC_BAD because changed salinity implies changed optode oxygen 19:10:57 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:10:57 25 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:10:57 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 19:10:57 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 268: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.68% reduction 19:10:57 25 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.268 19:10:57 25 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:10:57 25 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:10:57 25 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:10:57 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 19:10:57 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 19:13:04 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 19:13:05 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 19:13:05 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 19:13:28 25 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:13:28 25 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:13:28 25 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:13:28 25 Feb 2017 UTC /home/sg626/p6260268.log /home/sg626/p6260268.eng /home/sg626/p6260268.asc /home/sg626/p6260268.pro /home/sg626/p6260268.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 19:13:28 25 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:13:28 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:13:28 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:13:28 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:13:28 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:13:28 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:13:28 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:13:28 25 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:13:28 25 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:13:28 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:13:28 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:13:28 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:13:28 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:13:28 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:13:28 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:13:28 25 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:13:28 25 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:13:28 25 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:13:28 25 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:13:28 25 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:13:28 25 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:13:28 25 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:13:28 25 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:13:28 25 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 19:13:28 25 Feb 2017 UTC 22:10:34 25 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 5643 22:10:34 25 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:13:14 25 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 5762 22:13:14 25 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:13:14 25 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:13:14 25 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:13:14 25 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:13:14 25 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170225121314 ] 22:13:14 25 Feb 2017 UTC: INFO: Base.py(1333): PID:5770 22:13:14 25 Feb 2017 UTC: INFO: Base.py(1375): Started processing 22:13:14 25 Feb 2017 UTC 22:13:14 25 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:13:15 25 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:13:15 25 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:13:15 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:13:15 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:269 calls_made:1 call_cycle:0 22:13:15 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:13:15 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:269 calls_made:1 call_cycle:0 22:13:15 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:13:15 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:269 calls_made:1 call_cycle:0 22:13:15 25 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:269 calls_made:1 call_cycle:0 2310.3500 -15647.5340 02/25/17 22:08:26 UTC) to sdrifter@soest.hawaii.edu 22:13:15 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:269 calls_made:1 call_cycle:0 22:13:15 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:13:15 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:269 calls_made:1 call_cycle:0 22:13:15 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:13:15 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:269 calls_made:1 call_cycle:0 22:13:15 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:13:15 25 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:269 calls_made:1 call_cycle:0 22:13:15 25 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:13:15 25 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:13:20 25 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:13:21 25 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:13:21 25 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:13:21 25 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:13:21 25 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:13:21 25 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:13:22 25 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0269lz 22:13:22 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0269lz.x00 22:13:22 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0269lz.x01 22:13:22 25 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0269lz.r in process_file_group 22:13:22 25 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260269.log 22:13:22 25 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 22:13:22 25 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0269dz 22:13:22 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0269dz.x00 22:13:22 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0269dz.x01 22:13:22 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0269dz.x02 22:13:22 25 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0269dz.x03 22:13:22 25 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0269dz.r in process_file_group 22:13:22 25 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [269] 22:13:22 25 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [269] 22:13:22 25 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260269) for profiles 22:13:22 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 22:13:23 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/518) 518 to QC_BAD because CT out of water 22:13:23 25 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.096m) 22:13:23 25 Feb 2017 UTC: INFO: QC.py(365): Changed (4/518) 5 182 229 517 to QC_PROBABLY_BAD because raw temperature spikes 22:13:23 25 Feb 2017 UTC: INFO: QC.py(377): Changed (1/518) 518 to QC_BAD because raw salinity below bound 22:13:23 25 Feb 2017 UTC: INFO: QC.py(408): Changed (1/518) 182 to QC_PROBABLY_BAD because raw conductivity spikes 22:13:23 25 Feb 2017 UTC: INFO: QC.py(180): Changed (4/518) 5 182 229 517 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 22:13:23 25 Feb 2017 UTC: INFO: QC.py(365): Changed (4/518) 5 182 229 517 to QC_INTERPOLATED because temperature spikes 22:13:23 25 Feb 2017 UTC: INFO: QC.py(377): Changed (1/518) 518 to QC_BAD because salinity below bound 22:13:23 25 Feb 2017 UTC: INFO: QC.py(408): Changed (1/518) 182 to QC_INTERPOLATED because conductivity spikes 22:13:23 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/518) 227:232 to QC_BAD because slow apogee CT flow 22:13:23 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/518) 1:7 to QC_BAD because prior to dive start 22:13:23 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/518) 1:7 227:232 518 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:13:23 25 Feb 2017 UTC: INFO: QC.py(180): Changed (14/518) 1:7 227:232 518 to QC_BAD because changed corrected salin implies changed speed 22:13:23 25 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:13:23 25 Feb 2017 UTC: INFO: QC.py(180): Changed (2/518) 182 517 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 22:13:23 25 Feb 2017 UTC: INFO: QC.py(180): Changed (2/518) 182 517 to QC_INTERPOLATED because changed corrected temp implies changed speed 22:13:23 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.33 cm/s 22:13:23 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.09 cm/s 22:13:23 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:13:23 25 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/518) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:13:23 25 Feb 2017 UTC: INFO: QC.py(180): Changed (2/518) 5 517 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 22:13:23 25 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/518) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 22:13:23 25 Feb 2017 UTC: INFO: QC.py(180): Changed (2/518) 5 517 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 22:13:23 25 Feb 2017 UTC: INFO: QC.py(180): Changed (14/518) 1:7 227:232 518 to QC_BAD because changed salinity implies changed optode oxygen 22:13:23 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:13:23 25 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 22:13:23 25 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 22:13:23 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 269: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.70% reduction 22:13:24 25 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.269 22:13:24 25 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:13:24 25 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:13:24 25 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:13:24 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 22:13:24 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 22:15:29 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 22:15:30 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 22:15:30 25 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 22:15:53 25 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:15:53 25 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:15:53 25 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:15:53 25 Feb 2017 UTC /home/sg626/p6260269.log /home/sg626/p6260269.eng /home/sg626/p6260269.asc /home/sg626/p6260269.pro /home/sg626/p6260269.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 22:15:53 25 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:15:53 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:15:53 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:15:53 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:15:53 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:15:53 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:15:53 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:15:53 25 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:15:53 25 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:15:53 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:15:53 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:15:53 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:15:53 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:15:53 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:15:53 25 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:15:53 25 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:15:53 25 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:15:53 25 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:15:53 25 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:15:53 25 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:15:53 25 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:15:53 25 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:15:53 25 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:15:53 25 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 22:15:53 25 Feb 2017 UTC 01:16:03 26 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 10622 01:16:03 26 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:18:40 26 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 10736 01:18:40 26 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:18:40 26 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:18:40 26 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:18:40 26 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:18:40 26 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170225151839 ] 01:18:40 26 Feb 2017 UTC: INFO: Base.py(1333): PID:10743 01:18:40 26 Feb 2017 UTC: INFO: Base.py(1375): Started processing 01:18:40 26 Feb 2017 UTC 01:18:40 26 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:18:41 26 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:18:41 26 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:18:41 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:18:41 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:270 calls_made:1 call_cycle:0 01:18:41 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:18:41 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:270 calls_made:1 call_cycle:0 01:18:41 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:18:41 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:270 calls_made:1 call_cycle:0 01:18:41 26 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:270 calls_made:1 call_cycle:0 2309.5020 -15648.0060 02/26/17 01:14:00 UTC) to sdrifter@soest.hawaii.edu 01:18:51 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:270 calls_made:1 call_cycle:0 01:18:51 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:18:51 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:270 calls_made:1 call_cycle:0 01:18:51 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:18:51 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:270 calls_made:1 call_cycle:0 01:18:51 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:18:51 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:270 calls_made:1 call_cycle:0 01:18:51 26 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:18:51 26 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:18:55 26 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:18:56 26 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:18:56 26 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:18:56 26 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:18:56 26 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:18:56 26 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:18:57 26 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0270lz 01:18:57 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0270lz.x00 01:18:57 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0270lz.x01 01:18:57 26 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0270lz.r in process_file_group 01:18:57 26 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260270.log 01:18:57 26 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:18:57 26 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0270dz 01:18:57 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0270dz.x00 01:18:57 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0270dz.x01 01:18:57 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0270dz.x02 01:18:57 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0270dz.x03 01:18:57 26 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0270dz.r in process_file_group 01:18:58 26 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [270] 01:18:58 26 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [270] 01:18:58 26 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260270) for profiles 01:18:58 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:18:58 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/531) 530 531 to QC_BAD because CT out of water 01:18:58 26 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.101m) 01:18:58 26 Feb 2017 UTC: INFO: QC.py(365): Changed (1/531) 224 to QC_PROBABLY_BAD because raw temperature spikes 01:18:58 26 Feb 2017 UTC: INFO: QC.py(377): Changed (1/531) 530 to QC_BAD because raw salinity below bound 01:18:58 26 Feb 2017 UTC: INFO: QC.py(180): Changed (1/531) 224 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:18:58 26 Feb 2017 UTC: INFO: QC.py(180): Changed (1/531) 531 to QC_BAD because changed raw cond implies changed raw salinity 01:18:58 26 Feb 2017 UTC: INFO: QC.py(365): Changed (1/531) 224 to QC_INTERPOLATED because temperature spikes 01:18:58 26 Feb 2017 UTC: INFO: QC.py(377): Changed (1/531) 530 to QC_BAD because salinity below bound 01:18:58 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/531) 222:227 to QC_BAD because slow apogee CT flow 01:18:58 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/531) 1:6 to QC_BAD because prior to dive start 01:18:58 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/531) 1:6 222:227 530 531 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:18:58 26 Feb 2017 UTC: INFO: QC.py(180): Changed (14/531) 1:6 222:227 530 531 to QC_BAD because changed corrected salin implies changed speed 01:18:58 26 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:18:58 26 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 270 interp_salinity data_points in_between 338 343 % suspect thermal-inertia points 339 340 01:18:58 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.04 cm/s 01:18:58 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.10 cm/s 01:18:58 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:18:58 26 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/531) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:18:58 26 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/531) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 01:18:58 26 Feb 2017 UTC: INFO: QC.py(180): Changed (14/531) 1:6 222:227 530 531 to QC_BAD because changed salinity implies changed optode oxygen 01:18:58 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:18:58 26 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:18:58 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:18:59 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 270: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.64% reduction 01:18:59 26 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.270 01:18:59 26 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:18:59 26 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:18:59 26 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:18:59 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:18:59 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 01:21:06 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 01:21:07 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 01:21:07 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 01:21:31 26 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:21:31 26 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:21:31 26 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:21:31 26 Feb 2017 UTC /home/sg626/p6260270.log /home/sg626/p6260270.eng /home/sg626/p6260270.asc /home/sg626/p6260270.pro /home/sg626/p6260270.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 01:21:31 26 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:21:31 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:21:31 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:21:31 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:21:31 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:21:31 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:21:31 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:21:31 26 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:21:31 26 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:21:31 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:21:31 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:21:31 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:21:31 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:21:31 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:21:31 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:21:31 26 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:21:31 26 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:21:31 26 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:21:31 26 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:21:31 26 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:21:31 26 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:21:31 26 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:21:31 26 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:21:31 26 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 01:21:31 26 Feb 2017 UTC 04:23:27 26 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 15700 04:23:27 26 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:26:16 26 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 15822 04:26:16 26 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:26:16 26 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:26:16 26 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:26:16 26 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:26:16 26 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170225182615 ] 04:26:16 26 Feb 2017 UTC: INFO: Base.py(1333): PID:15829 04:26:16 26 Feb 2017 UTC: INFO: Base.py(1375): Started processing 04:26:16 26 Feb 2017 UTC 04:26:16 26 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:26:17 26 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:26:17 26 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:26:17 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:26:17 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:271 calls_made:1 call_cycle:0 04:26:17 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:26:17 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:271 calls_made:1 call_cycle:0 04:26:17 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:26:17 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:271 calls_made:1 call_cycle:0 04:26:17 26 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:271 calls_made:1 call_cycle:0 2310.2390 -15648.2710 02/26/17 04:21:25 UTC) to sdrifter@soest.hawaii.edu 04:26:17 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:271 calls_made:1 call_cycle:0 04:26:17 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:26:17 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:271 calls_made:1 call_cycle:0 04:26:17 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:26:17 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:271 calls_made:1 call_cycle:0 04:26:17 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:26:17 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:271 calls_made:1 call_cycle:0 04:26:17 26 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:26:17 26 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:26:22 26 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:26:22 26 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:26:22 26 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:26:22 26 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:26:22 26 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:26:22 26 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:26:24 26 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0271lz 04:26:24 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0271lz.x00 04:26:24 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0271lz.x01 04:26:24 26 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0271lz.r in process_file_group 04:26:24 26 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260271.log 04:26:24 26 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:26:24 26 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0271dz 04:26:24 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0271dz.x00 04:26:24 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0271dz.x01 04:26:24 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0271dz.x02 04:26:24 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0271dz.x03 04:26:24 26 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0271dz.r in process_file_group 04:26:24 26 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [271] 04:26:24 26 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [271] 04:26:24 26 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260271) for profiles 04:26:24 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 04:26:24 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/551) 551 to QC_BAD because CT out of water 04:26:24 26 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.061m) 04:26:24 26 Feb 2017 UTC: INFO: QC.py(365): Changed (4/551) 2 3 5 230 to QC_PROBABLY_BAD because raw temperature spikes 04:26:24 26 Feb 2017 UTC: INFO: QC.py(377): Changed (1/551) 551 to QC_BAD because raw salinity below bound 04:26:24 26 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(963): Restarting anomaly after 41.52m: -0.2569 at 269.38m (138) 04:26:24 26 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <189 pt uncorrectable 926.6m SUSPECT weak conductivity anomaly n:-0.26 p:0.25> 04:26:24 26 Feb 2017 UTC: INFO: QC.py(180): Changed (4/551) 2 3 5 230 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:26:24 26 Feb 2017 UTC: INFO: QC.py(365): Changed (4/551) 2 3 5 230 to QC_INTERPOLATED because temperature spikes 04:26:24 26 Feb 2017 UTC: INFO: QC.py(377): Changed (1/551) 551 to QC_BAD because salinity below bound 04:26:24 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/551) 228:233 to QC_BAD because slow apogee CT flow 04:26:24 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/551) 1:6 to QC_BAD because prior to dive start 04:26:24 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/551) 1:6 228:233 551 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:26:24 26 Feb 2017 UTC: INFO: QC.py(180): Changed (13/551) 1:6 228:233 551 to QC_BAD because changed corrected salin implies changed speed 04:26:25 26 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:26:25 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.48 cm/s 04:26:25 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.14 cm/s 04:26:25 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:26:25 26 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (162/551) 128:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:26:25 26 Feb 2017 UTC: INFO: QC.py(180): Changed (3/551) 2 3 5 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:26:25 26 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (162/551) 128:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 04:26:25 26 Feb 2017 UTC: INFO: QC.py(180): Changed (3/551) 2 3 5 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:26:25 26 Feb 2017 UTC: INFO: QC.py(180): Changed (13/551) 1:6 228:233 551 to QC_BAD because changed salinity implies changed optode oxygen 04:26:25 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:26:25 26 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:26:25 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 04:26:25 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 271: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.36% reduction 04:26:25 26 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.271 04:26:25 26 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:26:25 26 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:26:25 26 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:26:25 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 04:26:25 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 04:28:32 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 04:28:33 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 04:28:33 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 04:28:57 26 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:28:57 26 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:28:57 26 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:28:57 26 Feb 2017 UTC /home/sg626/p6260271.log /home/sg626/p6260271.eng /home/sg626/p6260271.asc /home/sg626/p6260271.pro /home/sg626/p6260271.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 04:28:57 26 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:28:57 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:28:57 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:28:57 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:28:57 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:28:57 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:28:57 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:28:57 26 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:28:57 26 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:28:57 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:28:57 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:28:57 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:28:57 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:28:57 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:28:57 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:28:57 26 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:28:57 26 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:28:57 26 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:28:57 26 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:28:57 26 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:28:57 26 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:28:57 26 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:28:57 26 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:28:57 26 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 04:28:57 26 Feb 2017 UTC 07:35:26 26 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 21152 07:35:26 26 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:38:07 26 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 21267 07:38:07 26 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:38:07 26 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:38:07 26 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:38:07 26 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:38:07 26 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170225213806 ] 07:38:07 26 Feb 2017 UTC: INFO: Base.py(1333): PID:21274 07:38:07 26 Feb 2017 UTC: INFO: Base.py(1375): Started processing 07:38:07 26 Feb 2017 UTC 07:38:07 26 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:38:08 26 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:38:08 26 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:38:08 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:38:08 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:272 calls_made:1 call_cycle:0 07:38:08 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:38:08 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:272 calls_made:1 call_cycle:0 07:38:08 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:38:08 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:272 calls_made:1 call_cycle:0 07:38:08 26 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:272 calls_made:1 call_cycle:0 2311.2770 -15647.9530 02/26/17 07:33:24 UTC) to sdrifter@soest.hawaii.edu 07:38:08 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:272 calls_made:1 call_cycle:0 07:38:08 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:38:08 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:272 calls_made:1 call_cycle:0 07:38:08 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:38:08 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:272 calls_made:1 call_cycle:0 07:38:08 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:38:08 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:272 calls_made:1 call_cycle:0 07:38:08 26 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:38:08 26 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:38:12 26 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:38:13 26 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:38:13 26 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:38:13 26 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:38:13 26 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:38:13 26 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:38:14 26 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0272lz 07:38:14 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0272lz.x00 07:38:14 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0272lz.x01 07:38:14 26 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0272lz.r in process_file_group 07:38:14 26 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260272.log 07:38:14 26 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:38:14 26 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0272dz 07:38:14 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0272dz.x00 07:38:14 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0272dz.x01 07:38:14 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0272dz.x02 07:38:14 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0272dz.x03 07:38:14 26 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0272dz.r in process_file_group 07:38:15 26 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [272] 07:38:15 26 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [272] 07:38:15 26 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260272) for profiles 07:38:15 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 07:38:15 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/586) 585 586 to QC_BAD because CT out of water 07:38:15 26 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.078m) 07:38:15 26 Feb 2017 UTC: INFO: QC.py(365): Changed (1/586) 3 to QC_PROBABLY_BAD because raw temperature spikes 07:38:15 26 Feb 2017 UTC: INFO: QC.py(180): Changed (1/586) 3 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:38:15 26 Feb 2017 UTC: INFO: QC.py(180): Changed (2/586) 585 586 to QC_BAD because changed raw cond implies changed raw salinity 07:38:15 26 Feb 2017 UTC: INFO: QC.py(365): Changed (1/586) 3 to QC_INTERPOLATED because temperature spikes 07:38:15 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/586) 230:235 to QC_BAD because slow apogee CT flow 07:38:15 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/586) 1:6 to QC_BAD because prior to dive start 07:38:15 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/586) 1:6 230:235 585 586 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:38:15 26 Feb 2017 UTC: INFO: QC.py(180): Changed (14/586) 1:6 230:235 585 586 to QC_BAD because changed corrected salin implies changed speed 07:38:16 26 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:38:16 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.35 cm/s 07:38:16 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.35 cm/s 07:38:16 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:38:16 26 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/586) 130 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:38:16 26 Feb 2017 UTC: INFO: QC.py(180): Changed (1/586) 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:38:16 26 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/586) 130 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 07:38:16 26 Feb 2017 UTC: INFO: QC.py(180): Changed (1/586) 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:38:16 26 Feb 2017 UTC: INFO: QC.py(180): Changed (14/586) 1:6 230:235 585 586 to QC_BAD because changed salinity implies changed optode oxygen 07:38:16 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:38:16 26 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:38:16 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 07:38:16 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 272: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.39% reduction 07:38:16 26 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.272 07:38:16 26 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:38:16 26 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:38:16 26 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:38:16 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 07:38:16 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:40:23 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 07:40:24 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:40:24 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:40:48 26 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:40:48 26 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:40:48 26 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:40:48 26 Feb 2017 UTC /home/sg626/p6260272.log /home/sg626/p6260272.eng /home/sg626/p6260272.asc /home/sg626/p6260272.pro /home/sg626/p6260272.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:40:48 26 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:40:48 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:40:48 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:40:48 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:40:48 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:40:48 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:40:48 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:40:48 26 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:40:48 26 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:40:48 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:40:48 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:40:48 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:40:48 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:40:48 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:40:48 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:40:48 26 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:40:48 26 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:40:48 26 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:40:48 26 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:40:48 26 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:40:48 26 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:40:48 26 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:40:48 26 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:40:48 26 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 07:40:48 26 Feb 2017 UTC 10:46:01 26 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 26374 10:46:01 26 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:48:54 26 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 26495 10:48:54 26 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:48:54 26 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:48:54 26 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:48:54 26 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:48:54 26 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170226004853 ] 10:48:54 26 Feb 2017 UTC: INFO: Base.py(1333): PID:26503 10:48:54 26 Feb 2017 UTC: INFO: Base.py(1375): Started processing 10:48:54 26 Feb 2017 UTC 10:48:54 26 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:48:55 26 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:48:55 26 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:48:55 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:48:55 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:273 calls_made:1 call_cycle:0 10:48:55 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:48:55 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:273 calls_made:1 call_cycle:0 10:48:55 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:48:55 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:273 calls_made:1 call_cycle:0 10:48:55 26 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:273 calls_made:1 call_cycle:0 2311.5860 -15648.0940 02/26/17 10:43:50 UTC) to sdrifter@soest.hawaii.edu 10:48:55 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:273 calls_made:1 call_cycle:0 10:48:55 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:48:55 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:273 calls_made:1 call_cycle:0 10:48:55 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:48:55 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:273 calls_made:1 call_cycle:0 10:48:55 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:48:55 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:273 calls_made:1 call_cycle:0 10:48:55 26 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:48:55 26 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:49:00 26 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:49:00 26 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:49:00 26 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:49:00 26 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:49:00 26 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:49:00 26 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:49:02 26 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0273lz 10:49:02 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0273lz.x00 10:49:02 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0273lz.x01 10:49:02 26 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0273lz.r in process_file_group 10:49:02 26 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260273.log 10:49:02 26 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:49:02 26 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0273dz 10:49:02 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0273dz.x00 10:49:02 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0273dz.x01 10:49:02 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0273dz.x02 10:49:02 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0273dz.x03 10:49:02 26 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0273dz.r in process_file_group 10:49:02 26 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [273] 10:49:02 26 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [273] 10:49:02 26 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260273) for profiles 10:49:02 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 10:49:02 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/576) 576 to QC_BAD because CT out of water 10:49:02 26 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.077m) 10:49:02 26 Feb 2017 UTC: INFO: QC.py(180): Changed (1/576) 576 to QC_BAD because changed raw cond implies changed raw salinity 10:49:02 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/576) 233:238 to QC_BAD because slow apogee CT flow 10:49:02 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/576) 1:7 to QC_BAD because prior to dive start 10:49:02 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/576) 1:7 233:238 576 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:49:02 26 Feb 2017 UTC: INFO: QC.py(180): Changed (14/576) 1:7 233:238 576 to QC_BAD because changed corrected salin implies changed speed 10:49:03 26 Feb 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 575 10:49:03 26 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 10:49:03 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.53 cm/s 10:49:03 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.97 cm/s 10:49:03 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:49:03 26 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (162/576) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:49:03 26 Feb 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/576) 575 to QC_BAD because slow flow in SBE43 10:49:03 26 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (162/576) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 10:49:03 26 Feb 2017 UTC: INFO: QC.py(180): Changed (14/576) 1:7 233:238 576 to QC_BAD because changed salinity implies changed optode oxygen 10:49:03 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:49:03 26 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:49:03 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 10:49:03 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 273: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.43% reduction 10:49:03 26 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.273 10:49:03 26 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:49:03 26 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:49:03 26 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:49:03 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 10:49:03 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 10:51:12 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 10:51:13 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 10:51:13 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 10:51:37 26 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:51:37 26 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:51:37 26 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 10:51:37 26 Feb 2017 UTC /home/sg626/p6260273.log /home/sg626/p6260273.eng /home/sg626/p6260273.asc /home/sg626/p6260273.pro /home/sg626/p6260273.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 10:51:37 26 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:51:37 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:51:37 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:51:37 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:51:37 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:51:37 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:51:37 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:51:37 26 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:51:37 26 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:51:37 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:51:37 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:51:37 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:51:37 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:51:37 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:51:37 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:51:37 26 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:51:37 26 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:51:37 26 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:51:37 26 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:51:37 26 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:51:37 26 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:51:37 26 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:51:37 26 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:51:37 26 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 10:51:37 26 Feb 2017 UTC 13:58:34 26 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 31884 13:58:34 26 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:01:16 26 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 32257 14:01:16 26 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:01:16 26 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 14:01:16 26 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 14:01:16 26 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:01:16 26 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170226040116 ] 14:01:16 26 Feb 2017 UTC: INFO: Base.py(1333): PID:32265 14:01:16 26 Feb 2017 UTC: INFO: Base.py(1375): Started processing 14:01:16 26 Feb 2017 UTC 14:01:16 26 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 14:01:17 26 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 14:01:17 26 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:01:17 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:01:17 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:274 calls_made:1 call_cycle:0 14:01:17 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:01:17 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:274 calls_made:1 call_cycle:0 14:01:17 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:01:17 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:274 calls_made:1 call_cycle:0 14:01:17 26 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:274 calls_made:1 call_cycle:0 2311.6210 -15648.3700 02/26/17 13:56:30 UTC) to sdrifter@soest.hawaii.edu 14:01:17 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:274 calls_made:1 call_cycle:0 14:01:17 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:01:17 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:274 calls_made:1 call_cycle:0 14:01:17 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:01:17 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:274 calls_made:1 call_cycle:0 14:01:17 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:01:17 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:274 calls_made:1 call_cycle:0 14:01:17 26 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:01:17 26 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:01:22 26 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:01:23 26 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:01:23 26 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 14:01:23 26 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:01:23 26 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:01:23 26 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 14:01:24 26 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0274lz 14:01:24 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0274lz.x00 14:01:24 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0274lz.x01 14:01:24 26 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0274lz.r in process_file_group 14:01:24 26 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260274.log 14:01:24 26 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 14:01:24 26 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0274dz 14:01:24 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0274dz.x00 14:01:24 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0274dz.x01 14:01:24 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0274dz.x02 14:01:24 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0274dz.x03 14:01:24 26 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0274dz.r in process_file_group 14:01:25 26 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [274] 14:01:25 26 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [274] 14:01:25 26 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260274) for profiles 14:01:25 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 14:01:25 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/590) 590 to QC_BAD because CT out of water 14:01:25 26 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.095m) 14:01:25 26 Feb 2017 UTC: INFO: QC.py(365): Changed (2/590) 2 3 to QC_PROBABLY_BAD because raw temperature spikes 14:01:25 26 Feb 2017 UTC: INFO: QC.py(377): Changed (1/590) 590 to QC_BAD because raw salinity below bound 14:01:25 26 Feb 2017 UTC: INFO: QC.py(408): Changed (1/590) 231 to QC_PROBABLY_BAD because raw conductivity spikes 14:01:25 26 Feb 2017 UTC: INFO: QC.py(180): Changed (2/590) 2 3 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:01:25 26 Feb 2017 UTC: INFO: QC.py(180): Changed (1/590) 231 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 14:01:25 26 Feb 2017 UTC: INFO: QC.py(365): Changed (2/590) 2 3 to QC_INTERPOLATED because temperature spikes 14:01:25 26 Feb 2017 UTC: INFO: QC.py(377): Changed (1/590) 590 to QC_BAD because salinity below bound 14:01:25 26 Feb 2017 UTC: INFO: QC.py(408): Changed (1/590) 231 to QC_INTERPOLATED because conductivity spikes 14:01:25 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/590) 229:233 to QC_BAD because slow apogee CT flow 14:01:25 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/590) 1:6 to QC_BAD because prior to dive start 14:01:25 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/590) 1:6 229:233 590 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:01:25 26 Feb 2017 UTC: INFO: QC.py(180): Changed (12/590) 1:6 229:233 590 to QC_BAD because changed corrected salin implies changed speed 14:01:25 26 Feb 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 589 14:01:25 26 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:01:25 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.15 cm/s 14:01:25 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.34 cm/s 14:01:25 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:01:26 26 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/590) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:01:26 26 Feb 2017 UTC: INFO: QC.py(180): Changed (2/590) 2 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 14:01:26 26 Feb 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/590) 589 to QC_BAD because slow flow in SBE43 14:01:26 26 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/590) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 14:01:26 26 Feb 2017 UTC: INFO: QC.py(180): Changed (2/590) 2 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 14:01:26 26 Feb 2017 UTC: INFO: QC.py(180): Changed (12/590) 1:6 229:233 590 to QC_BAD because changed salinity implies changed optode oxygen 14:01:26 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:01:26 26 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:01:26 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 14:01:26 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 274: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.03% reduction 14:01:26 26 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.274 14:01:26 26 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:01:26 26 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:01:26 26 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:01:26 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 14:01:26 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 14:03:35 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 72 14:03:36 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 14:03:36 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 14:04:00 26 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:04:00 26 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:04:00 26 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:04:00 26 Feb 2017 UTC /home/sg626/p6260274.log /home/sg626/p6260274.eng /home/sg626/p6260274.asc /home/sg626/p6260274.pro /home/sg626/p6260274.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 14:04:00 26 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:04:00 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:04:00 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:04:00 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:04:00 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:04:00 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:04:00 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:04:00 26 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:04:00 26 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:04:00 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:04:00 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:04:00 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:04:00 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:04:00 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:04:00 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:04:00 26 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:04:00 26 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:04:00 26 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:04:00 26 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:04:00 26 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:04:00 26 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:04:00 26 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:04:00 26 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:04:00 26 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 14:04:00 26 Feb 2017 UTC 17:10:29 26 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 5151 17:10:29 26 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:13:12 26 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 5273 17:13:12 26 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:13:12 26 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:13:12 26 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:13:12 26 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:13:12 26 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170226071311 ] 17:13:12 26 Feb 2017 UTC: INFO: Base.py(1333): PID:5280 17:13:12 26 Feb 2017 UTC: INFO: Base.py(1375): Started processing 17:13:12 26 Feb 2017 UTC 17:13:12 26 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:13:13 26 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:13:13 26 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:13:13 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:13:13 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:275 calls_made:1 call_cycle:0 17:13:13 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:13:13 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:275 calls_made:1 call_cycle:0 17:13:13 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:13:13 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:275 calls_made:1 call_cycle:0 17:13:13 26 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:275 calls_made:1 call_cycle:0 2311.5260 -15649.1330 02/26/17 17:08:22 UTC) to sdrifter@soest.hawaii.edu 17:13:13 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:275 calls_made:1 call_cycle:0 17:13:13 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:13:13 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:275 calls_made:1 call_cycle:0 17:13:13 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:13:13 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:275 calls_made:1 call_cycle:0 17:13:13 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:13:13 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:275 calls_made:1 call_cycle:0 17:13:13 26 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:13:13 26 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:13:18 26 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:13:19 26 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:13:19 26 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:13:19 26 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:13:19 26 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:13:19 26 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:13:20 26 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0275lz 17:13:20 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0275lz.x00 17:13:20 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0275lz.x01 17:13:20 26 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0275lz.r in process_file_group 17:13:20 26 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260275.log 17:13:20 26 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:13:20 26 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0275dz 17:13:20 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0275dz.x00 17:13:20 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0275dz.x01 17:13:20 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0275dz.x02 17:13:20 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0275dz.x03 17:13:20 26 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0275dz.r in process_file_group 17:13:20 26 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [275] 17:13:20 26 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [275] 17:13:20 26 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260275) for profiles 17:13:20 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:13:20 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/568) 567 568 to QC_BAD because CT out of water 17:13:20 26 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.174m) 17:13:20 26 Feb 2017 UTC: INFO: QC.py(180): Changed (2/568) 567 568 to QC_BAD because changed raw cond implies changed raw salinity 17:13:20 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/568) 225:230 to QC_BAD because slow apogee CT flow 17:13:20 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/568) 1:6 to QC_BAD because prior to dive start 17:13:20 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/568) 566 to QC_BAD because end of climb 17:13:20 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/568) 1:6 225:230 566:568 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:13:20 26 Feb 2017 UTC: INFO: QC.py(180): Changed (15/568) 1:6 225:230 566:568 to QC_BAD because changed corrected salin implies changed speed 17:13:21 26 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:13:21 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.87 cm/s 17:13:21 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.24 cm/s 17:13:21 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:13:21 26 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (165/568) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:13:21 26 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (165/568) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:13:21 26 Feb 2017 UTC: INFO: QC.py(180): Changed (15/568) 1:6 225:230 566:568 to QC_BAD because changed salinity implies changed optode oxygen 17:13:21 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:13:21 26 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:13:21 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:13:21 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 275: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.64% reduction 17:13:22 26 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.275 17:13:22 26 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:13:22 26 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:13:22 26 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:13:22 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:13:22 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:15:33 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 17:15:34 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:15:34 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:15:58 26 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:15:58 26 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:15:58 26 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:15:58 26 Feb 2017 UTC /home/sg626/p6260275.log /home/sg626/p6260275.eng /home/sg626/p6260275.asc /home/sg626/p6260275.pro /home/sg626/p6260275.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:15:58 26 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:15:58 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:15:58 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:15:58 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:15:58 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:15:58 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:15:58 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:15:58 26 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:15:58 26 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:15:58 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:15:58 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:15:58 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:15:58 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:15:58 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:15:58 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:15:58 26 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:15:58 26 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:15:58 26 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:15:58 26 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:15:58 26 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:15:58 26 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:15:58 26 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:15:58 26 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:15:58 26 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 17:15:58 26 Feb 2017 UTC 20:25:29 26 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 10174 20:25:29 26 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:28:20 26 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 10295 20:28:20 26 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:28:20 26 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:28:20 26 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:28:20 26 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:28:20 26 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170226102819 ] 20:28:20 26 Feb 2017 UTC: INFO: Base.py(1333): PID:10303 20:28:20 26 Feb 2017 UTC: INFO: Base.py(1375): Started processing 20:28:20 26 Feb 2017 UTC 20:28:20 26 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:28:21 26 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:28:21 26 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:28:21 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:28:21 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:276 calls_made:1 call_cycle:0 20:28:21 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:28:21 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:276 calls_made:1 call_cycle:0 20:28:21 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:28:21 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:276 calls_made:1 call_cycle:0 20:28:21 26 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:276 calls_made:1 call_cycle:0 2312.2250 -15649.9040 02/26/17 20:23:00 UTC) to sdrifter@soest.hawaii.edu 20:28:21 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:276 calls_made:1 call_cycle:0 20:28:21 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:28:21 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:276 calls_made:1 call_cycle:0 20:28:21 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:28:21 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:276 calls_made:1 call_cycle:0 20:28:21 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:28:21 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:276 calls_made:1 call_cycle:0 20:28:21 26 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:28:21 26 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:28:25 26 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:28:26 26 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:28:26 26 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:28:26 26 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:28:26 26 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:28:26 26 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:28:27 26 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0276lz 20:28:27 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0276lz.x00 20:28:27 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0276lz.x01 20:28:27 26 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0276lz.r in process_file_group 20:28:27 26 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260276.log 20:28:27 26 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:28:27 26 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0276dz 20:28:27 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0276dz.x00 20:28:27 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0276dz.x01 20:28:27 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0276dz.x02 20:28:27 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0276dz.x03 20:28:27 26 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0276dz.r in process_file_group 20:28:28 26 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [276] 20:28:28 26 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [276] 20:28:28 26 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260276) for profiles 20:28:28 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 20:28:28 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/593) 593 to QC_BAD because CT out of water 20:28:28 26 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.056m) 20:28:28 26 Feb 2017 UTC: INFO: QC.py(365): Changed (1/593) 233 to QC_PROBABLY_BAD because raw temperature spikes 20:28:28 26 Feb 2017 UTC: INFO: QC.py(377): Changed (1/593) 593 to QC_BAD because raw salinity below bound 20:28:28 26 Feb 2017 UTC: INFO: QC.py(408): Changed (2/593) 186 187 to QC_PROBABLY_BAD because raw conductivity spikes 20:28:28 26 Feb 2017 UTC: INFO: QC.py(180): Changed (1/593) 233 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 20:28:28 26 Feb 2017 UTC: INFO: QC.py(180): Changed (2/593) 186 187 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 20:28:28 26 Feb 2017 UTC: INFO: QC.py(365): Changed (1/593) 233 to QC_INTERPOLATED because temperature spikes 20:28:28 26 Feb 2017 UTC: INFO: QC.py(377): Changed (1/593) 593 to QC_BAD because salinity below bound 20:28:28 26 Feb 2017 UTC: INFO: QC.py(408): Changed (2/593) 186 187 to QC_INTERPOLATED because conductivity spikes 20:28:28 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/593) 231:236 to QC_BAD because slow apogee CT flow 20:28:28 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/593) 1:6 to QC_BAD because prior to dive start 20:28:28 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/593) 1:6 231:236 593 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 20:28:28 26 Feb 2017 UTC: INFO: QC.py(180): Changed (13/593) 1:6 231:236 593 to QC_BAD because changed corrected salin implies changed speed 20:28:29 26 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 20:28:29 26 Feb 2017 UTC: INFO: QC.py(180): Changed (2/593) 186 187 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 20:28:29 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.11 cm/s 20:28:29 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.19 cm/s 20:28:29 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 20:28:29 26 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (164/593) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 20:28:29 26 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (164/593) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 20:28:29 26 Feb 2017 UTC: INFO: QC.py(180): Changed (13/593) 1:6 231:236 593 to QC_BAD because changed salinity implies changed optode oxygen 20:28:29 26 Feb 2017 UTC: INFO: QC.py(180): Changed (1/593) 186 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 20:28:29 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 20:28:29 26 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 20:28:29 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 20:28:29 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 276: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.19% reduction 20:28:29 26 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.276 20:28:29 26 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:28:29 26 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:28:29 26 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:28:29 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 20:28:29 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 20:30:40 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 20:30:40 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 20:30:40 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 20:31:05 26 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:31:05 26 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:31:05 26 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:31:05 26 Feb 2017 UTC /home/sg626/p6260276.log /home/sg626/p6260276.eng /home/sg626/p6260276.asc /home/sg626/p6260276.pro /home/sg626/p6260276.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 20:31:05 26 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:31:05 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:31:05 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:31:05 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:31:05 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:31:05 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:31:05 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:31:05 26 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:31:05 26 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:31:05 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:31:05 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:31:05 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:31:05 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:31:05 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:31:05 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:31:05 26 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:31:05 26 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:31:05 26 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:31:05 26 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:31:05 26 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:31:05 26 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:31:05 26 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:31:05 26 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:31:05 26 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 20:31:05 26 Feb 2017 UTC 23:32:10 26 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 15607 23:32:10 26 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 23:34:52 26 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 15730 23:34:52 26 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:34:52 26 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:34:52 26 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:34:52 26 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:34:52 26 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170226133451 ] 23:34:52 26 Feb 2017 UTC: INFO: Base.py(1333): PID:15739 23:34:52 26 Feb 2017 UTC: INFO: Base.py(1375): Started processing 23:34:52 26 Feb 2017 UTC 23:34:52 26 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:34:53 26 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:34:53 26 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:34:53 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:34:53 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:277 calls_made:1 call_cycle:0 23:34:53 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:34:53 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:277 calls_made:1 call_cycle:0 23:34:53 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:34:53 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:277 calls_made:1 call_cycle:0 23:34:53 26 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:277 calls_made:1 call_cycle:0 2311.7160 -15650.4930 02/26/17 23:30:08 UTC) to sdrifter@soest.hawaii.edu 23:34:53 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:277 calls_made:1 call_cycle:0 23:34:53 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:34:53 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:277 calls_made:1 call_cycle:0 23:34:53 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:34:53 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:277 calls_made:1 call_cycle:0 23:34:53 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:34:53 26 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:277 calls_made:1 call_cycle:0 23:34:53 26 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:34:53 26 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:34:58 26 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:34:58 26 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:34:58 26 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:34:58 26 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:34:58 26 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:34:58 26 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:35:00 26 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0277lz 23:35:00 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0277lz.x00 23:35:00 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0277lz.x01 23:35:00 26 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0277lz.r in process_file_group 23:35:00 26 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260277.log 23:35:00 26 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:35:00 26 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0277dz 23:35:00 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0277dz.x00 23:35:00 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0277dz.x01 23:35:00 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0277dz.x02 23:35:00 26 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0277dz.x03 23:35:00 26 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0277dz.r in process_file_group 23:35:00 26 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [277] 23:35:00 26 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [277] 23:35:00 26 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260277) for profiles 23:35:00 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 23:35:00 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/529) 528 to QC_BAD because CT out of water 23:35:00 26 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.017m) 23:35:00 26 Feb 2017 UTC: INFO: QC.py(408): Changed (1/529) 205 to QC_PROBABLY_BAD because raw conductivity spikes 23:35:00 26 Feb 2017 UTC: INFO: QC.py(180): Changed (1/529) 205 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 23:35:00 26 Feb 2017 UTC: INFO: QC.py(180): Changed (1/529) 528 to QC_BAD because changed raw cond implies changed raw salinity 23:35:00 26 Feb 2017 UTC: INFO: QC.py(408): Changed (1/529) 205 to QC_INTERPOLATED because conductivity spikes 23:35:00 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/529) 226:231 to QC_BAD because slow apogee CT flow 23:35:00 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/529) 1:6 to QC_BAD because prior to dive start 23:35:00 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/529) 1:6 226:231 528 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 23:35:00 26 Feb 2017 UTC: INFO: QC.py(180): Changed (13/529) 1:6 226:231 528 to QC_BAD because changed corrected salin implies changed speed 23:35:01 26 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 23:35:01 26 Feb 2017 UTC: INFO: QC.py(180): Changed (1/529) 205 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 23:35:01 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.41 cm/s 23:35:01 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.35 cm/s 23:35:01 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 23:35:01 26 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (163/529) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 23:35:01 26 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (163/529) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 23:35:01 26 Feb 2017 UTC: INFO: QC.py(180): Changed (13/529) 1:6 226:231 528 to QC_BAD because changed salinity implies changed optode oxygen 23:35:01 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 23:35:01 26 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 23:35:01 26 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 23:35:01 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 277: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.46% reduction 23:35:01 26 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.277 23:35:01 26 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:35:01 26 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:35:01 26 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:35:01 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 23:35:01 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 23:37:11 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 23:37:12 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 23:37:12 26 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 23:37:36 26 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:37:36 26 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:37:36 26 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:37:36 26 Feb 2017 UTC /home/sg626/p6260277.log /home/sg626/p6260277.eng /home/sg626/p6260277.asc /home/sg626/p6260277.pro /home/sg626/p6260277.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 23:37:36 26 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:37:36 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:37:36 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:37:36 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:37:36 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:37:36 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:37:36 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:37:36 26 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:37:36 26 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:37:36 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:37:36 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:37:36 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:37:36 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:37:36 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:37:36 26 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:37:36 26 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:37:36 26 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:37:36 26 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:37:36 26 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:37:36 26 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:37:36 26 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:37:36 26 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:37:36 26 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:37:36 26 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 23:37:36 26 Feb 2017 UTC 02:42:14 27 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 20968 02:42:14 27 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:45:02 27 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 21090 02:45:02 27 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:45:02 27 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:45:02 27 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:45:02 27 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:45:02 27 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170226164501 ] 02:45:02 27 Feb 2017 UTC: INFO: Base.py(1333): PID:21098 02:45:02 27 Feb 2017 UTC: INFO: Base.py(1375): Started processing 02:45:02 27 Feb 2017 UTC 02:45:02 27 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:45:03 27 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:45:03 27 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:45:03 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:45:03 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:278 calls_made:2 call_cycle:0 02:45:03 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:45:03 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:278 calls_made:2 call_cycle:0 02:45:03 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:45:03 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:278 calls_made:2 call_cycle:0 02:45:03 27 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:278 calls_made:2 call_cycle:0 2311.0310 -15650.8610 02/27/17 02:37:48 UTC) to sdrifter@soest.hawaii.edu 02:45:03 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:278 calls_made:2 call_cycle:0 02:45:03 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:45:03 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:278 calls_made:2 call_cycle:0 02:45:03 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:45:03 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:278 calls_made:2 call_cycle:0 02:45:03 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:45:03 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:278 calls_made:2 call_cycle:0 02:45:03 27 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:45:03 27 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:45:08 27 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:45:09 27 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:45:09 27 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:45:09 27 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:45:09 27 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:45:09 27 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:45:10 27 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0278lz 02:45:10 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0278lz.x00 02:45:10 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0278lz.x01 02:45:10 27 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0278lz.r in process_file_group 02:45:10 27 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260278.log 02:45:10 27 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 02:45:10 27 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0278dz 02:45:10 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0278dz.x00 02:45:10 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0278dz.x01 02:45:10 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0278dz.x02 02:45:10 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0278dz.x03 02:45:10 27 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0278dz.r in process_file_group 02:45:10 27 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [278] 02:45:10 27 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [278] 02:45:10 27 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260278) for profiles 02:45:10 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 02:45:11 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/565) 563:565 to QC_BAD because CT out of water 02:45:11 27 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.150m) 02:45:11 27 Feb 2017 UTC: INFO: QC.py(365): Changed (2/565) 2 3 to QC_PROBABLY_BAD because raw temperature spikes 02:45:11 27 Feb 2017 UTC: INFO: QC.py(377): Changed (2/565) 564 565 to QC_BAD because raw salinity below bound 02:45:11 27 Feb 2017 UTC: INFO: QC.py(180): Changed (2/565) 2 3 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:45:11 27 Feb 2017 UTC: INFO: QC.py(180): Changed (1/565) 563 to QC_BAD because changed raw cond implies changed raw salinity 02:45:11 27 Feb 2017 UTC: INFO: QC.py(365): Changed (2/565) 2 3 to QC_INTERPOLATED because temperature spikes 02:45:11 27 Feb 2017 UTC: INFO: QC.py(377): Changed (2/565) 564 565 to QC_BAD because salinity below bound 02:45:11 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/565) 225:230 to QC_BAD because slow apogee CT flow 02:45:11 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/565) 1:6 to QC_BAD because prior to dive start 02:45:11 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/565) 1:6 225:230 563:565 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:45:11 27 Feb 2017 UTC: INFO: QC.py(180): Changed (15/565) 1:6 225:230 563:565 to QC_BAD because changed corrected salin implies changed speed 02:45:11 27 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:45:11 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.68 cm/s 02:45:11 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.04 cm/s 02:45:11 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:45:11 27 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/565) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:45:11 27 Feb 2017 UTC: INFO: QC.py(180): Changed (2/565) 2 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:45:11 27 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/565) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 02:45:11 27 Feb 2017 UTC: INFO: QC.py(180): Changed (2/565) 2 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:45:11 27 Feb 2017 UTC: INFO: QC.py(180): Changed (15/565) 1:6 225:230 563:565 to QC_BAD because changed salinity implies changed optode oxygen 02:45:11 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:45:11 27 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:45:11 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 02:45:12 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 278: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.65% reduction 02:45:12 27 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.278 02:45:12 27 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:45:12 27 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:45:12 27 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:45:12 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 02:45:12 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 02:47:24 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 02:47:25 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 02:47:25 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 02:47:50 27 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:47:50 27 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:47:50 27 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:47:50 27 Feb 2017 UTC /home/sg626/p6260278.log /home/sg626/p6260278.eng /home/sg626/p6260278.asc /home/sg626/p6260278.pro /home/sg626/p6260278.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 02:47:50 27 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:47:50 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:47:50 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:47:50 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:47:50 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:47:50 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:47:50 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:47:50 27 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:47:50 27 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:47:50 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:47:50 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:47:50 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:47:50 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:47:50 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:47:50 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:47:50 27 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:47:50 27 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:47:50 27 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:47:50 27 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:47:50 27 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:47:50 27 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:47:50 27 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:47:50 27 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:47:50 27 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 02:47:50 27 Feb 2017 UTC 05:55:34 27 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 26295 05:55:34 27 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:58:34 27 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 26418 05:58:34 27 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:58:34 27 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:58:34 27 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:58:34 27 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:58:34 27 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170226195833 ] 05:58:34 27 Feb 2017 UTC: INFO: Base.py(1333): PID:26425 05:58:34 27 Feb 2017 UTC: INFO: Base.py(1375): Started processing 05:58:34 27 Feb 2017 UTC 05:58:34 27 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:58:35 27 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:58:35 27 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:58:35 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:58:35 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:279 calls_made:1 call_cycle:0 05:58:35 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:58:35 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:279 calls_made:1 call_cycle:0 05:58:35 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:58:35 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:279 calls_made:1 call_cycle:0 05:58:35 27 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:279 calls_made:1 call_cycle:0 2311.7990 -15650.8540 02/27/17 05:53:01 UTC) to sdrifter@soest.hawaii.edu 05:58:35 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:279 calls_made:1 call_cycle:0 05:58:35 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:58:35 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:279 calls_made:1 call_cycle:0 05:58:35 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:58:35 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:279 calls_made:1 call_cycle:0 05:58:35 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:58:35 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:279 calls_made:1 call_cycle:0 05:58:35 27 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:58:35 27 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:58:40 27 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:58:41 27 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:58:41 27 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:58:41 27 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:58:41 27 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:58:41 27 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:58:42 27 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0279lz 05:58:42 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0279lz.x00 05:58:42 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0279lz.x01 05:58:42 27 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0279lz.r in process_file_group 05:58:42 27 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260279.log 05:58:42 27 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:58:42 27 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0279dz 05:58:42 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0279dz.x00 05:58:42 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0279dz.x01 05:58:42 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0279dz.x02 05:58:42 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0279dz.x03 05:58:42 27 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0279dz.r in process_file_group 05:58:42 27 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [279] 05:58:42 27 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [279] 05:58:42 27 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260279) for profiles 05:58:42 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:58:42 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/578) 577 578 to QC_BAD because CT out of water 05:58:42 27 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.040m) 05:58:42 27 Feb 2017 UTC: INFO: QC.py(377): Changed (1/578) 578 to QC_BAD because raw salinity below bound 05:58:42 27 Feb 2017 UTC: INFO: QC.py(180): Changed (1/578) 577 to QC_BAD because changed raw cond implies changed raw salinity 05:58:42 27 Feb 2017 UTC: INFO: QC.py(377): Changed (1/578) 578 to QC_BAD because salinity below bound 05:58:42 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/578) 227:232 to QC_BAD because slow apogee CT flow 05:58:42 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/578) 1:6 to QC_BAD because prior to dive start 05:58:43 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/578) 1:6 227:232 577 578 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:58:43 27 Feb 2017 UTC: INFO: QC.py(180): Changed (14/578) 1:6 227:232 577 578 to QC_BAD because changed corrected salin implies changed speed 05:58:43 27 Feb 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 576 05:58:43 27 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:58:43 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.74 cm/s 05:58:43 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.51 cm/s 05:58:43 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:58:43 27 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (163/578) 128:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:58:43 27 Feb 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/578) 576 to QC_BAD because slow flow in SBE43 05:58:43 27 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (163/578) 128:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:58:43 27 Feb 2017 UTC: INFO: QC.py(180): Changed (14/578) 1:6 227:232 577 578 to QC_BAD because changed salinity implies changed optode oxygen 05:58:43 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:58:43 27 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:58:43 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 05:58:43 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 279: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.42% reduction 05:58:44 27 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.279 05:58:44 27 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:58:44 27 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:58:44 27 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:58:44 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 05:58:44 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 06:00:56 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 06:00:56 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 06:00:56 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 06:01:21 27 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:01:21 27 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:01:21 27 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 06:01:21 27 Feb 2017 UTC /home/sg626/p6260279.log /home/sg626/p6260279.eng /home/sg626/p6260279.asc /home/sg626/p6260279.pro /home/sg626/p6260279.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 06:01:21 27 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:01:21 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:01:21 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:01:21 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:01:21 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:01:21 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:01:21 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:01:21 27 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:01:21 27 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:01:21 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:01:21 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:01:21 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:01:21 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:01:21 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:01:21 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:01:21 27 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:01:21 27 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 06:01:21 27 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 06:01:21 27 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 06:01:21 27 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 06:01:21 27 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:01:21 27 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:01:21 27 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:01:21 27 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 06:01:21 27 Feb 2017 UTC 09:09:02 27 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 31838 09:09:02 27 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:11:57 27 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 32043 09:11:57 27 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:11:57 27 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:11:57 27 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:11:57 27 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:11:57 27 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170226231156 ] 09:11:57 27 Feb 2017 UTC: INFO: Base.py(1333): PID:32051 09:11:57 27 Feb 2017 UTC: INFO: Base.py(1375): Started processing 09:11:57 27 Feb 2017 UTC 09:11:57 27 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:11:58 27 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:11:58 27 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:11:58 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:11:58 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:280 calls_made:2 call_cycle:0 09:11:58 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:11:58 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:280 calls_made:2 call_cycle:0 09:11:58 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:11:58 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:280 calls_made:2 call_cycle:0 09:11:58 27 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:280 calls_made:2 call_cycle:0 2312.3610 -15651.0650 02/27/17 09:04:24 UTC) to sdrifter@soest.hawaii.edu 09:11:58 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:280 calls_made:2 call_cycle:0 09:11:58 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:11:58 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:280 calls_made:2 call_cycle:0 09:11:58 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:11:58 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:280 calls_made:2 call_cycle:0 09:11:58 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:11:58 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:280 calls_made:2 call_cycle:0 09:11:58 27 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:11:58 27 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:12:03 27 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:12:03 27 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:12:03 27 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:12:03 27 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:12:03 27 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:12:03 27 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:12:05 27 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0280lz 09:12:05 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0280lz.x00 09:12:05 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0280lz.x01 09:12:05 27 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0280lz.r in process_file_group 09:12:05 27 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260280.log 09:12:05 27 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:12:05 27 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0280dz 09:12:05 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0280dz.x00 09:12:05 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0280dz.x01 09:12:05 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0280dz.x02 09:12:05 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0280dz.x03 09:12:05 27 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0280dz.r in process_file_group 09:12:05 27 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [280] 09:12:05 27 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [280] 09:12:05 27 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260280) for profiles 09:12:05 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 09:12:05 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/573) 572 573 to QC_BAD because CT out of water 09:12:05 27 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.142m) 09:12:05 27 Feb 2017 UTC: INFO: QC.py(365): Changed (3/573) 3 4 229 to QC_PROBABLY_BAD because raw temperature spikes 09:12:05 27 Feb 2017 UTC: INFO: QC.py(180): Changed (3/573) 3 4 229 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 09:12:05 27 Feb 2017 UTC: INFO: QC.py(180): Changed (2/573) 572 573 to QC_BAD because changed raw cond implies changed raw salinity 09:12:05 27 Feb 2017 UTC: INFO: QC.py(365): Changed (3/573) 3 4 229 to QC_INTERPOLATED because temperature spikes 09:12:05 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/573) 227:232 to QC_BAD because slow apogee CT flow 09:12:05 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/573) 1:7 to QC_BAD because prior to dive start 09:12:05 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/573) 571 to QC_BAD because end of climb 09:12:05 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/573) 1:7 227:232 571:573 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:12:05 27 Feb 2017 UTC: INFO: QC.py(180): Changed (16/573) 1:7 227:232 571:573 to QC_BAD because changed corrected salin implies changed speed 09:12:06 27 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:12:06 27 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 280 interp_salinity data_points in_between 339 350 % suspect thermal-inertia points 339 340 09:12:06 27 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 280 interp_salinity data_points in_between 355 367 % suspect thermal-inertia points 357:359 09:12:06 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.55 cm/s 09:12:06 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.23 cm/s 09:12:06 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:12:06 27 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/573) 128:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:12:06 27 Feb 2017 UTC: INFO: QC.py(180): Changed (2/573) 3 4 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:12:06 27 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/573) 128:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 09:12:06 27 Feb 2017 UTC: INFO: QC.py(180): Changed (2/573) 3 4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:12:06 27 Feb 2017 UTC: INFO: QC.py(180): Changed (16/573) 1:7 227:232 571:573 to QC_BAD because changed salinity implies changed optode oxygen 09:12:06 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:12:06 27 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:12:06 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 09:12:06 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 280: Data set size for profile, binned and kkyy files reduced by 16 points, a 2.79% reduction 09:12:06 27 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.280 09:12:06 27 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:12:06 27 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:12:06 27 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:12:07 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 09:12:07 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 09:14:18 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 09:14:19 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 09:14:19 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 09:14:44 27 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:14:44 27 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:14:44 27 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:14:44 27 Feb 2017 UTC /home/sg626/p6260280.log /home/sg626/p6260280.eng /home/sg626/p6260280.asc /home/sg626/p6260280.pro /home/sg626/p6260280.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 09:14:44 27 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:14:44 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:14:44 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:14:44 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:14:44 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:14:44 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:14:44 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:14:44 27 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:14:44 27 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:14:44 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:14:44 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:14:44 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:14:44 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:14:44 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:14:44 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:14:44 27 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:14:44 27 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:14:44 27 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:14:44 27 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:14:44 27 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:14:44 27 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:14:44 27 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:14:44 27 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:14:44 27 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 09:14:44 27 Feb 2017 UTC 12:17:27 27 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 4714 12:17:27 27 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:20:19 27 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 4940 12:20:19 27 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:20:19 27 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:20:19 27 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:20:19 27 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:20:19 27 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170227022018 ] 12:20:19 27 Feb 2017 UTC: INFO: Base.py(1333): PID:4947 12:20:19 27 Feb 2017 UTC: INFO: Base.py(1375): Started processing 12:20:19 27 Feb 2017 UTC 12:20:19 27 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:20:20 27 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:20:20 27 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:20:20 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:20:20 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:281 calls_made:1 call_cycle:0 12:20:20 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:20:20 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:281 calls_made:1 call_cycle:0 12:20:20 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:20:20 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:281 calls_made:1 call_cycle:0 12:20:20 27 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:281 calls_made:1 call_cycle:0 2312.6620 -15651.3690 02/27/17 12:14:59 UTC) to sdrifter@soest.hawaii.edu 12:20:20 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:281 calls_made:1 call_cycle:0 12:20:20 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:20:20 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:281 calls_made:1 call_cycle:0 12:20:20 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:20:20 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:281 calls_made:1 call_cycle:0 12:20:20 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:20:20 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:281 calls_made:1 call_cycle:0 12:20:20 27 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:20:20 27 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:20:25 27 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:20:25 27 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:20:25 27 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:20:25 27 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:20:25 27 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:20:25 27 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:20:27 27 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0281lz 12:20:27 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0281lz.x00 12:20:27 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0281lz.x01 12:20:27 27 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0281lz.r in process_file_group 12:20:27 27 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260281.log 12:20:27 27 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:20:27 27 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0281dz 12:20:27 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0281dz.x00 12:20:27 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0281dz.x01 12:20:27 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0281dz.x02 12:20:27 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0281dz.x03 12:20:27 27 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0281dz.r in process_file_group 12:20:27 27 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [281] 12:20:27 27 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [281] 12:20:27 27 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260281) for profiles 12:20:27 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 12:20:27 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/537) 536 537 to QC_BAD because CT out of water 12:20:27 27 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.100m) 12:20:27 27 Feb 2017 UTC: INFO: QC.py(365): Changed (2/537) 2 536 to QC_PROBABLY_BAD because raw temperature spikes 12:20:27 27 Feb 2017 UTC: INFO: QC.py(180): Changed (2/537) 2 536 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 12:20:27 27 Feb 2017 UTC: INFO: QC.py(180): Changed (2/537) 536 537 to QC_BAD because changed raw cond implies changed raw salinity 12:20:27 27 Feb 2017 UTC: INFO: QC.py(365): Changed (2/537) 2 536 to QC_INTERPOLATED because temperature spikes 12:20:27 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/537) 230:235 to QC_BAD because slow apogee CT flow 12:20:27 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/537) 1:6 to QC_BAD because prior to dive start 12:20:27 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/537) 535 to QC_BAD because end of climb 12:20:27 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/537) 1:6 230:235 535:537 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:20:27 27 Feb 2017 UTC: INFO: QC.py(180): Changed (15/537) 1:6 230:235 535:537 to QC_BAD because changed corrected salin implies changed speed 12:20:28 27 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:20:28 27 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 281 interp_salinity data_points in_between 342 348 % suspect thermal-inertia points 345 12:20:28 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.46 cm/s 12:20:28 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.46 cm/s 12:20:28 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:20:28 27 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (164/537) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:20:28 27 Feb 2017 UTC: INFO: QC.py(180): Changed (2/537) 2 536 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 12:20:28 27 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (164/537) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 12:20:28 27 Feb 2017 UTC: INFO: QC.py(180): Changed (2/537) 2 536 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 12:20:28 27 Feb 2017 UTC: INFO: QC.py(180): Changed (15/537) 1:6 230:235 535:537 to QC_BAD because changed salinity implies changed optode oxygen 12:20:28 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:20:28 27 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:20:28 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 12:20:28 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 281: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.79% reduction 12:20:28 27 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.281 12:20:28 27 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:20:28 27 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:20:28 27 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:20:29 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 12:20:29 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 12:22:42 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 12:22:43 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 12:22:43 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 12:23:08 27 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:23:08 27 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:23:08 27 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 12:23:08 27 Feb 2017 UTC /home/sg626/p6260281.log /home/sg626/p6260281.eng /home/sg626/p6260281.asc /home/sg626/p6260281.pro /home/sg626/p6260281.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 12:23:08 27 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:23:08 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:23:08 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:23:08 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:23:08 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:23:08 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:23:08 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:23:08 27 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:23:08 27 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:23:08 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:23:08 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:23:08 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:23:08 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:23:08 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:23:08 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:23:08 27 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:23:08 27 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 12:23:08 27 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 12:23:08 27 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 12:23:08 27 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 12:23:08 27 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:23:08 27 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:23:08 27 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:23:08 27 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 12:23:08 27 Feb 2017 UTC 15:27:42 27 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 10105 15:27:42 27 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 15:30:35 27 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 10300 15:30:35 27 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 15:30:35 27 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 15:30:35 27 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 15:30:35 27 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 15:30:35 27 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170227053034 ] 15:30:35 27 Feb 2017 UTC: INFO: Base.py(1333): PID:10308 15:30:35 27 Feb 2017 UTC: INFO: Base.py(1375): Started processing 15:30:35 27 Feb 2017 UTC 15:30:35 27 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 15:30:36 27 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 15:30:36 27 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 15:30:36 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:30:36 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:282 calls_made:1 call_cycle:0 15:30:36 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:30:36 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:282 calls_made:1 call_cycle:0 15:30:36 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:30:36 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:282 calls_made:1 call_cycle:0 15:30:36 27 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:282 calls_made:1 call_cycle:0 2312.7600 -15651.8810 02/27/17 15:25:42 UTC) to sdrifter@soest.hawaii.edu 15:30:36 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:282 calls_made:1 call_cycle:0 15:30:36 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:30:36 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:282 calls_made:1 call_cycle:0 15:30:36 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:30:36 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:282 calls_made:1 call_cycle:0 15:30:36 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:30:36 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:282 calls_made:1 call_cycle:0 15:30:36 27 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:30:36 27 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 15:30:41 27 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 15:30:42 27 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 15:30:42 27 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 15:30:42 27 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 15:30:42 27 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 15:30:42 27 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 15:30:43 27 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0282lz 15:30:43 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0282lz.x00 15:30:43 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0282lz.x01 15:30:43 27 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0282lz.r in process_file_group 15:30:43 27 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260282.log 15:30:43 27 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 15:30:43 27 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0282dz 15:30:43 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0282dz.x00 15:30:43 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0282dz.x01 15:30:43 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0282dz.x02 15:30:43 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0282dz.x03 15:30:43 27 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0282dz.r in process_file_group 15:30:44 27 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [282] 15:30:44 27 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [282] 15:30:44 27 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260282) for profiles 15:30:44 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 15:30:44 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/553) 552 553 to QC_BAD because CT out of water 15:30:44 27 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.088m) 15:30:44 27 Feb 2017 UTC: INFO: QC.py(365): Changed (6/553) 2 183 184 265 266 552 to QC_PROBABLY_BAD because raw temperature spikes 15:30:44 27 Feb 2017 UTC: INFO: QC.py(377): Changed (1/553) 552 to QC_BAD because raw salinity below bound 15:30:44 27 Feb 2017 UTC: INFO: QC.py(408): Changed (3/553) 183 184 191 to QC_PROBABLY_BAD because raw conductivity spikes 15:30:44 27 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <194 pt uncorrectable 934.8m SUSPECT weak conductivity anomaly n:-0.28 p:0.26> 15:30:44 27 Feb 2017 UTC: INFO: QC.py(180): Changed (5/553) 2 183 184 265 266 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 15:30:44 27 Feb 2017 UTC: INFO: QC.py(180): Changed (1/553) 191 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 15:30:44 27 Feb 2017 UTC: INFO: QC.py(180): Changed (1/553) 553 to QC_BAD because changed raw cond implies changed raw salinity 15:30:44 27 Feb 2017 UTC: INFO: QC.py(365): Changed (6/553) 2 183 184 265 266 552 to QC_INTERPOLATED because temperature spikes 15:30:44 27 Feb 2017 UTC: INFO: QC.py(377): Changed (1/553) 552 to QC_BAD because salinity below bound 15:30:44 27 Feb 2017 UTC: INFO: QC.py(408): Changed (3/553) 183 184 191 to QC_INTERPOLATED because conductivity spikes 15:30:44 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/553) 228:233 to QC_BAD because slow apogee CT flow 15:30:44 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/553) 1:6 to QC_BAD because prior to dive start 15:30:44 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/553) 1:6 228:233 552 553 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 15:30:44 27 Feb 2017 UTC: INFO: QC.py(180): Changed (14/553) 1:6 228:233 552 553 to QC_BAD because changed corrected salin implies changed speed 15:30:44 27 Feb 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 551 15:30:44 27 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 15:30:44 27 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 282 interp_salinity data_points in_between 313 340 % suspect thermal-inertia points 15:30:44 27 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 282 interp_salinity data_points in_between 342 344 % suspect thermal-inertia points 15:30:44 27 Feb 2017 UTC: INFO: QC.py(180): Changed (4/553) 183 184 265 266 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 15:30:44 27 Feb 2017 UTC: INFO: QC.py(180): Changed (1/553) 191 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 15:30:44 27 Feb 2017 UTC: INFO: QC.py(180): Changed (4/553) 183 184 265 266 to QC_INTERPOLATED because changed corrected temp implies changed speed 15:30:44 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.82 cm/s 15:30:44 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.34 cm/s 15:30:44 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 15:30:44 27 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (166/553) 128:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 15:30:44 27 Feb 2017 UTC: INFO: QC.py(180): Changed (3/553) 2 266 552 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 15:30:44 27 Feb 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/553) 551 to QC_BAD because slow flow in SBE43 15:30:44 27 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (166/553) 128:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 15:30:44 27 Feb 2017 UTC: INFO: QC.py(180): Changed (3/553) 2 266 552 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 15:30:44 27 Feb 2017 UTC: INFO: QC.py(180): Changed (14/553) 1:6 228:233 552 553 to QC_BAD because changed salinity implies changed optode oxygen 15:30:44 27 Feb 2017 UTC: INFO: QC.py(180): Changed (1/553) 191 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 15:30:44 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 15:30:44 27 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 15:30:44 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 15:30:45 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 282: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.53% reduction 15:30:45 27 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.282 15:30:45 27 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 15:30:45 27 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 15:30:45 27 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 15:30:45 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 15:30:45 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 15:32:58 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 15:32:59 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 15:32:59 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 15:33:24 27 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 15:33:24 27 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 15:33:24 27 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 15:33:24 27 Feb 2017 UTC /home/sg626/p6260282.log /home/sg626/p6260282.eng /home/sg626/p6260282.asc /home/sg626/p6260282.pro /home/sg626/p6260282.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 15:33:24 27 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 15:33:24 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:33:24 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:33:24 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:33:24 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:33:24 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:33:24 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:33:24 27 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:33:24 27 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 15:33:24 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:33:24 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:33:24 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:33:24 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:33:24 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:33:24 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:33:24 27 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:33:24 27 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 15:33:24 27 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 15:33:24 27 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 15:33:24 27 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 15:33:24 27 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 15:33:24 27 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 15:33:24 27 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 15:33:24 27 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 15:33:24 27 Feb 2017 UTC 18:38:55 27 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 15316 18:38:55 27 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 18:42:50 27 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 15530 18:42:50 27 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:42:50 27 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 18:42:50 27 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 18:42:50 27 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:42:50 27 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170227084250 ] 18:42:50 27 Feb 2017 UTC: INFO: Base.py(1333): PID:15537 18:42:50 27 Feb 2017 UTC: INFO: Base.py(1375): Started processing 18:42:50 27 Feb 2017 UTC 18:42:50 27 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 18:42:51 27 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 18:42:51 27 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:42:51 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:42:51 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:283 calls_made:1 call_cycle:0 18:42:51 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:42:51 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:283 calls_made:1 call_cycle:0 18:42:51 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:42:51 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:283 calls_made:1 call_cycle:0 18:42:51 27 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:283 calls_made:1 call_cycle:0 2312.8650 -15652.4750 02/27/17 18:36:48 UTC) to sdrifter@soest.hawaii.edu 18:42:51 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:283 calls_made:1 call_cycle:0 18:42:51 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:42:51 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:283 calls_made:1 call_cycle:0 18:42:51 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:42:51 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:283 calls_made:1 call_cycle:0 18:42:51 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:42:51 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:283 calls_made:1 call_cycle:0 18:42:51 27 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:42:51 27 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:42:56 27 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:42:57 27 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:42:57 27 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 18:42:57 27 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:42:57 27 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:42:57 27 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 18:42:58 27 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0283lz 18:42:58 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0283lz.x00 18:42:58 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0283lz.x01 18:42:58 27 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0283lz.r in process_file_group 18:42:58 27 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260283.log 18:42:58 27 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 18:42:58 27 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0283dz 18:42:58 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0283dz.x00 18:42:58 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0283dz.x01 18:42:58 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0283dz.x02 18:42:58 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0283dz.x03 18:42:58 27 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0283dz.r in process_file_group 18:42:59 27 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [283] 18:42:59 27 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [283] 18:42:59 27 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260283) for profiles 18:42:59 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 18:42:59 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/573) 572 to QC_BAD because CT out of water 18:42:59 27 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.032m) 18:42:59 27 Feb 2017 UTC: INFO: QC.py(365): Changed (6/573) 2 4 191 192 235 269 to QC_PROBABLY_BAD because raw temperature spikes 18:42:59 27 Feb 2017 UTC: INFO: QC.py(408): Changed (2/573) 191 269 to QC_PROBABLY_BAD because raw conductivity spikes 18:42:59 27 Feb 2017 UTC: INFO: QC.py(180): Changed (6/573) 2 4 191 192 235 269 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 18:42:59 27 Feb 2017 UTC: INFO: QC.py(180): Changed (1/573) 572 to QC_BAD because changed raw cond implies changed raw salinity 18:42:59 27 Feb 2017 UTC: INFO: QC.py(365): Changed (6/573) 2 4 191 192 235 269 to QC_INTERPOLATED because temperature spikes 18:42:59 27 Feb 2017 UTC: INFO: QC.py(408): Changed (2/573) 191 269 to QC_INTERPOLATED because conductivity spikes 18:42:59 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/573) 233:238 to QC_BAD because slow apogee CT flow 18:42:59 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/573) 1:6 to QC_BAD because prior to dive start 18:42:59 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/573) 571 573 to QC_BAD because end of climb 18:42:59 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/573) 1:6 233:238 571:573 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 18:42:59 27 Feb 2017 UTC: INFO: QC.py(180): Changed (15/573) 1:6 233:238 571:573 to QC_BAD because changed corrected salin implies changed speed 18:43:00 27 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 18:43:00 27 Feb 2017 UTC: INFO: QC.py(180): Changed (3/573) 191 192 269 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 18:43:00 27 Feb 2017 UTC: INFO: QC.py(180): Changed (3/573) 191 192 269 to QC_INTERPOLATED because changed corrected temp implies changed speed 18:43:00 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.13 cm/s 18:43:00 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.19 cm/s 18:43:00 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 18:43:00 27 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (157/573) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 18:43:00 27 Feb 2017 UTC: INFO: QC.py(180): Changed (3/573) 2 4 191 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 18:43:00 27 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (157/573) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 18:43:00 27 Feb 2017 UTC: INFO: QC.py(180): Changed (3/573) 2 4 191 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 18:43:00 27 Feb 2017 UTC: INFO: QC.py(180): Changed (15/573) 1:6 233:238 571:573 to QC_BAD because changed salinity implies changed optode oxygen 18:43:00 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 18:43:00 27 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 18:43:00 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 18:43:00 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 283: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.62% reduction 18:43:00 27 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.283 18:43:00 27 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:43:00 27 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:43:00 27 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:43:00 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 18:43:00 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 18:45:14 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 18:45:15 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 18:45:15 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 18:45:40 27 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:45:40 27 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:45:40 27 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:45:40 27 Feb 2017 UTC /home/sg626/p6260283.log /home/sg626/p6260283.eng /home/sg626/p6260283.asc /home/sg626/p6260283.pro /home/sg626/p6260283.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 18:45:40 27 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:45:40 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:45:40 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:45:40 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:45:40 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:45:40 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:45:40 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:45:40 27 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:45:40 27 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:45:40 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:45:40 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:45:40 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:45:40 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:45:40 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:45:40 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:45:40 27 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:45:40 27 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 18:45:40 27 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 18:45:40 27 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 18:45:40 27 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 18:45:40 27 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:45:40 27 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:45:40 27 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:45:40 27 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 18:45:40 27 Feb 2017 UTC 21:43:09 27 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 20701 21:43:09 27 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:45:53 27 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 20823 21:45:53 27 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:45:53 27 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:45:53 27 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:45:53 27 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:45:53 27 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170227114552 ] 21:45:53 27 Feb 2017 UTC: INFO: Base.py(1333): PID:20830 21:45:53 27 Feb 2017 UTC: INFO: Base.py(1375): Started processing 21:45:53 27 Feb 2017 UTC 21:45:53 27 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:45:54 27 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:45:54 27 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:45:54 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:45:54 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:284 calls_made:1 call_cycle:0 21:45:54 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:45:54 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:284 calls_made:1 call_cycle:0 21:45:54 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:45:54 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:284 calls_made:1 call_cycle:0 21:45:54 27 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:284 calls_made:1 call_cycle:0 2313.2160 -15653.2260 02/27/17 21:41:02 UTC) to sdrifter@soest.hawaii.edu 21:45:54 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:284 calls_made:1 call_cycle:0 21:45:54 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:45:54 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:284 calls_made:1 call_cycle:0 21:45:54 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:45:54 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:284 calls_made:1 call_cycle:0 21:45:54 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:45:54 27 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:284 calls_made:1 call_cycle:0 21:45:54 27 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:45:54 27 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:45:59 27 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:46:00 27 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:46:00 27 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:46:00 27 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:46:00 27 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:46:00 27 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:46:01 27 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0284lz 21:46:01 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0284lz.x00 21:46:01 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0284lz.x01 21:46:01 27 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0284lz.r in process_file_group 21:46:01 27 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260284.log 21:46:01 27 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:46:01 27 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0284dz 21:46:01 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0284dz.x00 21:46:01 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0284dz.x01 21:46:01 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0284dz.x02 21:46:01 27 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0284dz.x03 21:46:01 27 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0284dz.r in process_file_group 21:46:01 27 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [284] 21:46:01 27 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [284] 21:46:01 27 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260284) for profiles 21:46:01 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:46:02 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/523) 522 523 to QC_BAD because CT out of water 21:46:02 27 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.037m) 21:46:02 27 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <194 pt uncorrectable 988.1m SUSPECT weak conductivity anomaly n:-0.33 p:0.38> 21:46:02 27 Feb 2017 UTC: INFO: QC.py(180): Changed (2/523) 522 523 to QC_BAD because changed raw cond implies changed raw salinity 21:46:02 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/523) 229:234 to QC_BAD because slow apogee CT flow 21:46:02 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/523) 1:6 to QC_BAD because prior to dive start 21:46:02 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/523) 1:6 229:234 522 523 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:46:02 27 Feb 2017 UTC: INFO: QC.py(180): Changed (14/523) 1:6 229:234 522 523 to QC_BAD because changed corrected salin implies changed speed 21:46:02 27 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:46:02 27 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 284 interp_salinity data_points in_between 285 328 % suspect thermal-inertia points 323 324 21:46:02 27 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 284 interp_salinity data_points in_between 356 370 % suspect thermal-inertia points 361:363 369 21:46:02 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.79 cm/s 21:46:02 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.60 cm/s 21:46:02 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:46:02 27 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/523) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:46:02 27 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/523) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:46:02 27 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/523) 521 to QC_BAD because bad aa4330 oyxgen 21:46:02 27 Feb 2017 UTC: INFO: QC.py(180): Changed (14/523) 1:6 229:234 522 523 to QC_BAD because changed salinity implies changed optode oxygen 21:46:02 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:46:02 27 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:46:02 27 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:46:03 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 284: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.68% reduction 21:46:03 27 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.284 21:46:03 27 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:46:03 27 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:46:03 27 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:46:03 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:46:03 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 21:48:16 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 21:48:17 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 21:48:17 27 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 21:48:43 27 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:48:43 27 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:48:43 27 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:48:43 27 Feb 2017 UTC /home/sg626/p6260284.log /home/sg626/p6260284.eng /home/sg626/p6260284.asc /home/sg626/p6260284.pro /home/sg626/p6260284.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 21:48:43 27 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:48:43 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:48:43 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:48:43 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:48:43 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:48:43 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:48:43 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:48:43 27 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:48:43 27 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:48:43 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:48:43 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:48:43 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:48:43 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:48:43 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:48:43 27 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:48:43 27 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:48:43 27 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:48:43 27 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:48:43 27 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:48:43 27 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:48:43 27 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:48:43 27 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:48:43 27 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:48:43 27 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 21:48:43 27 Feb 2017 UTC 00:44:22 28 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 26269 00:44:22 28 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:47:13 28 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 26393 00:47:13 28 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:47:13 28 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:47:13 28 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:47:13 28 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:47:13 28 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170227144713 ] 00:47:13 28 Feb 2017 UTC: INFO: Base.py(1333): PID:26400 00:47:13 28 Feb 2017 UTC: INFO: Base.py(1375): Started processing 00:47:13 28 Feb 2017 UTC 00:47:13 28 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:47:14 28 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:47:14 28 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:47:14 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:47:14 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:285 calls_made:1 call_cycle:0 00:47:14 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:47:14 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:285 calls_made:1 call_cycle:0 00:47:14 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:47:14 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:285 calls_made:1 call_cycle:0 00:47:14 28 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:285 calls_made:1 call_cycle:0 2312.1490 -15653.8420 02/28/17 00:42:18 UTC) to sdrifter@soest.hawaii.edu 00:47:14 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:285 calls_made:1 call_cycle:0 00:47:14 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:47:14 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:285 calls_made:1 call_cycle:0 00:47:14 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:47:14 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:285 calls_made:1 call_cycle:0 00:47:14 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:47:14 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:285 calls_made:1 call_cycle:0 00:47:14 28 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:47:14 28 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:47:19 28 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:47:20 28 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:47:20 28 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:47:20 28 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:47:20 28 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:47:20 28 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:47:21 28 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0285lz 00:47:21 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0285lz.x00 00:47:21 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0285lz.x01 00:47:21 28 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0285lz.r in process_file_group 00:47:21 28 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260285.log 00:47:21 28 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:47:21 28 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0285dz 00:47:21 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0285dz.x00 00:47:21 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0285dz.x01 00:47:21 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0285dz.x02 00:47:21 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0285dz.x03 00:47:21 28 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0285dz.r in process_file_group 00:47:22 28 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [285] 00:47:22 28 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [285] 00:47:22 28 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260285) for profiles 00:47:22 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 00:47:22 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/511) 510 511 to QC_BAD because CT out of water 00:47:22 28 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.122m) 00:47:22 28 Feb 2017 UTC: INFO: QC.py(365): Changed (3/511) 4 5 510 to QC_PROBABLY_BAD because raw temperature spikes 00:47:22 28 Feb 2017 UTC: INFO: QC.py(377): Changed (1/511) 510 to QC_BAD because raw salinity below bound 00:47:22 28 Feb 2017 UTC: INFO: QC.py(180): Changed (2/511) 4 5 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:47:22 28 Feb 2017 UTC: INFO: QC.py(180): Changed (1/511) 511 to QC_BAD because changed raw cond implies changed raw salinity 00:47:22 28 Feb 2017 UTC: INFO: QC.py(365): Changed (3/511) 4 5 510 to QC_INTERPOLATED because temperature spikes 00:47:22 28 Feb 2017 UTC: INFO: QC.py(377): Changed (1/511) 510 to QC_BAD because salinity below bound 00:47:22 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/511) 229:234 to QC_BAD because slow apogee CT flow 00:47:22 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/511) 1:7 to QC_BAD because prior to dive start 00:47:22 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/511) 509 to QC_BAD because end of climb 00:47:22 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/511) 1:7 229:234 509:511 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:47:22 28 Feb 2017 UTC: INFO: QC.py(180): Changed (16/511) 1:7 229:234 509:511 to QC_BAD because changed corrected salin implies changed speed 00:47:23 28 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:47:23 28 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 285 interp_salinity data_points in_between 288 330 % suspect thermal-inertia points 317 00:47:23 28 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 285 interp_salinity data_points in_between 347 356 % suspect thermal-inertia points 353:355 00:47:23 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.90 cm/s 00:47:23 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.22 cm/s 00:47:23 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:47:23 28 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (160/511) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:47:23 28 Feb 2017 UTC: INFO: QC.py(180): Changed (3/511) 4 5 510 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:47:23 28 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (160/511) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 00:47:23 28 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/511) 509 511 to QC_BAD because bad aa4330 oyxgen 00:47:23 28 Feb 2017 UTC: INFO: QC.py(180): Changed (3/511) 4 5 510 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:47:23 28 Feb 2017 UTC: INFO: QC.py(180): Changed (14/511) 1:7 229:234 510 to QC_BAD because changed salinity implies changed optode oxygen 00:47:23 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:47:23 28 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:47:23 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 00:47:23 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 285: Data set size for profile, binned and kkyy files reduced by 16 points, a 3.13% reduction 00:47:23 28 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.285 00:47:23 28 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:47:23 28 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:47:23 28 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:47:23 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 00:47:23 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 00:49:37 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 00:49:38 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 00:49:38 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 00:50:04 28 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:50:04 28 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:50:04 28 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:50:04 28 Feb 2017 UTC /home/sg626/p6260285.log /home/sg626/p6260285.eng /home/sg626/p6260285.asc /home/sg626/p6260285.pro /home/sg626/p6260285.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 00:50:04 28 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:50:04 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:50:04 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:50:04 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:50:04 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:50:04 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:50:04 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:50:04 28 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:50:04 28 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:50:04 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:50:04 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:50:04 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:50:04 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:50:04 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:50:04 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:50:04 28 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:50:04 28 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:50:04 28 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:50:04 28 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:50:04 28 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:50:04 28 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:50:04 28 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:50:04 28 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:50:04 28 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 00:50:04 28 Feb 2017 UTC 03:53:37 28 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 31514 03:53:37 28 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:56:28 28 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 31639 03:56:28 28 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:56:28 28 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:56:28 28 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:56:28 28 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:56:28 28 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170227175627 ] 03:56:28 28 Feb 2017 UTC: INFO: Base.py(1333): PID:31647 03:56:28 28 Feb 2017 UTC: INFO: Base.py(1375): Started processing 03:56:28 28 Feb 2017 UTC 03:56:28 28 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:56:29 28 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:56:29 28 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:56:29 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:56:29 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:286 calls_made:1 call_cycle:0 03:56:29 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:56:29 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:286 calls_made:1 call_cycle:0 03:56:29 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:56:29 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:286 calls_made:1 call_cycle:0 03:56:29 28 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:286 calls_made:1 call_cycle:0 2310.7660 -15654.6230 02/28/17 03:51:31 UTC) to sdrifter@soest.hawaii.edu 03:56:29 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:286 calls_made:1 call_cycle:0 03:56:29 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:56:29 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:286 calls_made:1 call_cycle:0 03:56:29 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:56:29 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:286 calls_made:1 call_cycle:0 03:56:29 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:56:29 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:286 calls_made:1 call_cycle:0 03:56:29 28 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:56:29 28 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:56:34 28 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:56:35 28 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:56:35 28 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:56:35 28 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:56:35 28 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:56:35 28 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:56:36 28 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0286lz 03:56:36 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0286lz.x00 03:56:36 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0286lz.x01 03:56:36 28 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0286lz.r in process_file_group 03:56:36 28 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260286.log 03:56:36 28 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:56:36 28 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0286dz 03:56:36 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0286dz.x00 03:56:36 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0286dz.x01 03:56:36 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0286dz.x02 03:56:36 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0286dz.x03 03:56:36 28 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0286dz.r in process_file_group 03:56:36 28 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [286] 03:56:36 28 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [286] 03:56:36 28 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260286) for profiles 03:56:36 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 03:56:37 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/564) 563 564 to QC_BAD because CT out of water 03:56:37 28 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.126m) 03:56:37 28 Feb 2017 UTC: INFO: QC.py(365): Changed (3/564) 3:5 to QC_PROBABLY_BAD because raw temperature spikes 03:56:37 28 Feb 2017 UTC: INFO: QC.py(377): Changed (1/564) 564 to QC_BAD because raw salinity below bound 03:56:37 28 Feb 2017 UTC: INFO: QC.py(408): Changed (1/564) 2 to QC_PROBABLY_BAD because raw conductivity spikes 03:56:37 28 Feb 2017 UTC: INFO: QC.py(180): Changed (3/564) 3:5 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 03:56:37 28 Feb 2017 UTC: INFO: QC.py(180): Changed (1/564) 2 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 03:56:37 28 Feb 2017 UTC: INFO: QC.py(180): Changed (1/564) 563 to QC_BAD because changed raw cond implies changed raw salinity 03:56:37 28 Feb 2017 UTC: INFO: QC.py(365): Changed (3/564) 3:5 to QC_INTERPOLATED because temperature spikes 03:56:37 28 Feb 2017 UTC: INFO: QC.py(377): Changed (1/564) 564 to QC_BAD because salinity below bound 03:56:37 28 Feb 2017 UTC: INFO: QC.py(408): Changed (1/564) 2 to QC_INTERPOLATED because conductivity spikes 03:56:37 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/564) 230:234 to QC_BAD because slow apogee CT flow 03:56:37 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/564) 1:6 to QC_BAD because prior to dive start 03:56:37 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/564) 562 to QC_BAD because end of climb 03:56:37 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/564) 1:6 230:234 562:564 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:56:37 28 Feb 2017 UTC: INFO: QC.py(180): Changed (14/564) 1:6 230:234 562:564 to QC_BAD because changed corrected salin implies changed speed 03:56:37 28 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 03:56:37 28 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 286 interp_salinity data_points in_between 330 344 % suspect thermal-inertia points 338 03:56:37 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.02 cm/s 03:56:37 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.03 cm/s 03:56:37 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:56:37 28 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (162/564) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:56:37 28 Feb 2017 UTC: INFO: QC.py(180): Changed (3/564) 3:5 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:56:37 28 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (162/564) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 03:56:37 28 Feb 2017 UTC: INFO: QC.py(180): Changed (3/564) 3:5 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 03:56:37 28 Feb 2017 UTC: INFO: QC.py(180): Changed (14/564) 1:6 230:234 562:564 to QC_BAD because changed salinity implies changed optode oxygen 03:56:37 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:56:37 28 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:56:37 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 03:56:38 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 286: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.48% reduction 03:56:38 28 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.286 03:56:38 28 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:56:38 28 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:56:38 28 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:56:38 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 03:56:38 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 03:58:53 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 03:58:54 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 03:58:54 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 03:59:20 28 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:59:20 28 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:59:20 28 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:59:20 28 Feb 2017 UTC /home/sg626/p6260286.log /home/sg626/p6260286.eng /home/sg626/p6260286.asc /home/sg626/p6260286.pro /home/sg626/p6260286.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 03:59:20 28 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:59:20 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:59:20 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:59:20 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:59:20 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:59:20 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:59:20 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:59:20 28 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:59:20 28 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:59:20 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:59:20 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:59:20 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:59:20 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:59:20 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:59:20 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:59:20 28 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:59:20 28 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:59:20 28 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:59:20 28 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:59:20 28 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:59:20 28 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:59:20 28 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:59:20 28 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:59:20 28 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 03:59:20 28 Feb 2017 UTC 06:58:03 28 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 4756 06:58:03 28 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:01:21 28 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 5201 07:01:21 28 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:01:21 28 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:01:21 28 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:01:21 28 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:01:21 28 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170227210120 ] 07:01:21 28 Feb 2017 UTC: INFO: Base.py(1333): PID:5209 07:01:21 28 Feb 2017 UTC: INFO: Base.py(1375): Started processing 07:01:21 28 Feb 2017 UTC 07:01:21 28 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:01:22 28 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:01:22 28 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:01:22 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:01:22 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:287 calls_made:1 call_cycle:0 07:01:22 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:01:22 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:287 calls_made:1 call_cycle:0 07:01:22 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:01:22 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:287 calls_made:1 call_cycle:0 07:01:22 28 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:287 calls_made:1 call_cycle:0 2309.4430 -15655.7600 02/28/17 06:55:59 UTC) to sdrifter@soest.hawaii.edu 07:01:22 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:287 calls_made:1 call_cycle:0 07:01:22 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:01:22 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:287 calls_made:1 call_cycle:0 07:01:22 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:01:22 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:287 calls_made:1 call_cycle:0 07:01:22 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:01:22 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:287 calls_made:1 call_cycle:0 07:01:22 28 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:01:22 28 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:01:27 28 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:01:27 28 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:01:27 28 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:01:27 28 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:01:27 28 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:01:27 28 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:01:29 28 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0287lz 07:01:29 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0287lz.x00 07:01:29 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0287lz.x01 07:01:29 28 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0287lz.r in process_file_group 07:01:29 28 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260287.log 07:01:29 28 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:01:29 28 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0287dz 07:01:29 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0287dz.x00 07:01:29 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0287dz.x01 07:01:29 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0287dz.x02 07:01:29 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0287dz.x03 07:01:29 28 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0287dz.r in process_file_group 07:01:29 28 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [287] 07:01:29 28 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [287] 07:01:29 28 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260287) for profiles 07:01:29 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 07:01:29 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/519) 519 to QC_BAD because CT out of water 07:01:29 28 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.055m) 07:01:29 28 Feb 2017 UTC: INFO: QC.py(365): Changed (5/519) 2 3 182 256 258 to QC_PROBABLY_BAD because raw temperature spikes 07:01:29 28 Feb 2017 UTC: INFO: QC.py(408): Changed (3/519) 182 256 258 to QC_PROBABLY_BAD because raw conductivity spikes 07:01:29 28 Feb 2017 UTC: INFO: QC.py(180): Changed (5/519) 2 3 182 256 258 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:01:29 28 Feb 2017 UTC: INFO: QC.py(180): Changed (1/519) 519 to QC_BAD because changed raw cond implies changed raw salinity 07:01:29 28 Feb 2017 UTC: INFO: QC.py(365): Changed (5/519) 2 3 182 256 258 to QC_INTERPOLATED because temperature spikes 07:01:29 28 Feb 2017 UTC: INFO: QC.py(408): Changed (3/519) 182 256 258 to QC_INTERPOLATED because conductivity spikes 07:01:29 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/519) 221:226 to QC_BAD because slow apogee CT flow 07:01:29 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/519) 1:6 to QC_BAD because prior to dive start 07:01:29 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/519) 1:6 221:226 519 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:01:29 28 Feb 2017 UTC: INFO: QC.py(180): Changed (13/519) 1:6 221:226 519 to QC_BAD because changed corrected salin implies changed speed 07:01:30 28 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:01:30 28 Feb 2017 UTC: INFO: QC.py(180): Changed (3/519) 182 256 258 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 07:01:30 28 Feb 2017 UTC: INFO: QC.py(180): Changed (3/519) 182 256 258 to QC_INTERPOLATED because changed corrected temp implies changed speed 07:01:30 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.71 cm/s 07:01:30 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.42 cm/s 07:01:30 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:01:30 28 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/519) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:01:30 28 Feb 2017 UTC: INFO: QC.py(180): Changed (3/519) 2 3 256 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:01:30 28 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/519) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 07:01:30 28 Feb 2017 UTC: INFO: QC.py(180): Changed (3/519) 2 3 256 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:01:30 28 Feb 2017 UTC: INFO: QC.py(180): Changed (13/519) 1:6 221:226 519 to QC_BAD because changed salinity implies changed optode oxygen 07:01:30 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:01:30 28 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:01:30 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 07:01:30 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 287: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.50% reduction 07:01:30 28 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.287 07:01:30 28 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:01:30 28 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:01:30 28 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:01:30 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 07:01:30 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:03:48 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 07:03:49 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:03:49 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:04:15 28 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:04:15 28 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:04:15 28 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:04:15 28 Feb 2017 UTC /home/sg626/p6260287.log /home/sg626/p6260287.eng /home/sg626/p6260287.asc /home/sg626/p6260287.pro /home/sg626/p6260287.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:04:15 28 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:04:15 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:04:15 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:04:15 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:04:15 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:04:15 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:04:15 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:04:15 28 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:04:15 28 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:04:15 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:04:15 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:04:15 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:04:15 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:04:15 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:04:15 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:04:15 28 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:04:15 28 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:04:15 28 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:04:15 28 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:04:15 28 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:04:15 28 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:04:15 28 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:04:15 28 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:04:15 28 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 07:04:15 28 Feb 2017 UTC 10:05:27 28 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 10491 10:05:27 28 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:08:25 28 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 10614 10:08:25 28 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:08:25 28 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:08:25 28 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:08:25 28 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:08:25 28 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170228000824 ] 10:08:25 28 Feb 2017 UTC: INFO: Base.py(1333): PID:10621 10:08:25 28 Feb 2017 UTC: INFO: Base.py(1375): Started processing 10:08:25 28 Feb 2017 UTC 10:08:25 28 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:08:26 28 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:08:26 28 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:08:26 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:08:26 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:288 calls_made:1 call_cycle:0 10:08:26 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:08:26 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:288 calls_made:1 call_cycle:0 10:08:26 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:08:26 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:288 calls_made:1 call_cycle:0 10:08:26 28 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:288 calls_made:1 call_cycle:0 2308.2590 -15657.0750 02/28/17 10:03:00 UTC) to sdrifter@soest.hawaii.edu 10:08:26 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:288 calls_made:1 call_cycle:0 10:08:26 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:08:26 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:288 calls_made:1 call_cycle:0 10:08:26 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:08:26 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:288 calls_made:1 call_cycle:0 10:08:26 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:08:26 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:288 calls_made:1 call_cycle:0 10:08:26 28 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:08:26 28 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:08:31 28 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:08:32 28 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:08:32 28 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:08:32 28 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:08:32 28 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:08:32 28 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:08:33 28 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0288lz 10:08:33 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0288lz.x00 10:08:33 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0288lz.x01 10:08:33 28 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0288lz.r in process_file_group 10:08:33 28 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260288.log 10:08:33 28 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:08:33 28 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0288dz 10:08:33 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0288dz.x00 10:08:33 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0288dz.x01 10:08:33 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0288dz.x02 10:08:33 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0288dz.x03 10:08:33 28 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0288dz.r in process_file_group 10:08:33 28 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [288] 10:08:33 28 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [288] 10:08:34 28 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260288) for profiles 10:08:34 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 10:08:34 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/536) 536 to QC_BAD because CT out of water 10:08:34 28 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.138m) 10:08:34 28 Feb 2017 UTC: INFO: QC.py(365): Changed (5/536) 2 3 180 218 256 to QC_PROBABLY_BAD because raw temperature spikes 10:08:34 28 Feb 2017 UTC: INFO: QC.py(408): Changed (6/536) 179 180 218 246 247 256 to QC_PROBABLY_BAD because raw conductivity spikes 10:08:34 28 Feb 2017 UTC: INFO: QC.py(180): Changed (5/536) 2 3 180 218 256 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 10:08:34 28 Feb 2017 UTC: INFO: QC.py(180): Changed (3/536) 179 246 247 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 10:08:34 28 Feb 2017 UTC: INFO: QC.py(180): Changed (1/536) 536 to QC_BAD because changed raw cond implies changed raw salinity 10:08:34 28 Feb 2017 UTC: INFO: QC.py(365): Changed (5/536) 2 3 180 218 256 to QC_INTERPOLATED because temperature spikes 10:08:34 28 Feb 2017 UTC: INFO: QC.py(408): Changed (6/536) 179 180 218 246 247 256 to QC_INTERPOLATED because conductivity spikes 10:08:34 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/536) 223:227 to QC_BAD because slow apogee CT flow 10:08:34 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/536) 1:6 to QC_BAD because prior to dive start 10:08:34 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/536) 535 to QC_BAD because end of climb 10:08:34 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/536) 1:6 223:227 535 536 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:08:34 28 Feb 2017 UTC: INFO: QC.py(180): Changed (13/536) 1:6 223:227 535 536 to QC_BAD because changed corrected salin implies changed speed 10:08:34 28 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 10:08:34 28 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 288 interp_salinity data_points in_between 263 330 % suspect thermal-inertia points 325:328 10:08:34 28 Feb 2017 UTC: INFO: QC.py(180): Changed (3/536) 180 218 256 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 10:08:34 28 Feb 2017 UTC: INFO: QC.py(180): Changed (3/536) 179 246 247 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 10:08:34 28 Feb 2017 UTC: INFO: QC.py(180): Changed (3/536) 180 218 256 to QC_INTERPOLATED because changed corrected temp implies changed speed 10:08:34 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.08 cm/s 10:08:34 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.43 cm/s 10:08:34 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:08:34 28 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/536) 123:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:08:34 28 Feb 2017 UTC: INFO: QC.py(180): Changed (3/536) 2 3 256 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 10:08:34 28 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/536) 123:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 10:08:34 28 Feb 2017 UTC: INFO: QC.py(180): Changed (3/536) 2 3 256 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 10:08:34 28 Feb 2017 UTC: INFO: QC.py(180): Changed (13/536) 1:6 223:227 535 536 to QC_BAD because changed salinity implies changed optode oxygen 10:08:34 28 Feb 2017 UTC: INFO: QC.py(180): Changed (1/536) 246 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 10:08:34 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:08:34 28 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:08:34 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 10:08:35 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 288: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.43% reduction 10:08:35 28 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.288 10:08:35 28 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:08:35 28 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:08:35 28 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:08:35 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 10:08:35 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 10:10:52 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 10:10:53 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 10:10:53 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 10:11:19 28 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:11:19 28 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:11:19 28 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 10:11:19 28 Feb 2017 UTC /home/sg626/p6260288.log /home/sg626/p6260288.eng /home/sg626/p6260288.asc /home/sg626/p6260288.pro /home/sg626/p6260288.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 10:11:19 28 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:11:19 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:11:19 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:11:19 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:11:19 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:11:19 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:11:19 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:11:19 28 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:11:19 28 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:11:19 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:11:19 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:11:19 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:11:19 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:11:19 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:11:19 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:11:19 28 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:11:19 28 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:11:19 28 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:11:19 28 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:11:19 28 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:11:19 28 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:11:19 28 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:11:19 28 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:11:19 28 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 10:11:19 28 Feb 2017 UTC 13:09:15 28 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 15540 13:09:15 28 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:12:19 28 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 15751 13:12:19 28 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:12:19 28 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:12:19 28 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:12:19 28 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:12:19 28 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170228031218 ] 13:12:19 28 Feb 2017 UTC: INFO: Base.py(1333): PID:15759 13:12:19 28 Feb 2017 UTC: INFO: Base.py(1375): Started processing 13:12:19 28 Feb 2017 UTC 13:12:19 28 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:12:20 28 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:12:20 28 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:12:20 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:12:20 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:289 calls_made:1 call_cycle:0 13:12:20 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:12:20 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:289 calls_made:1 call_cycle:0 13:12:20 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:12:20 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:289 calls_made:1 call_cycle:0 13:12:20 28 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:289 calls_made:1 call_cycle:0 2308.6940 -15657.8340 02/28/17 13:07:13 UTC) to sdrifter@soest.hawaii.edu 13:12:20 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:289 calls_made:1 call_cycle:0 13:12:20 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:12:20 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:289 calls_made:1 call_cycle:0 13:12:20 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:12:20 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:289 calls_made:1 call_cycle:0 13:12:20 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:12:20 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:289 calls_made:1 call_cycle:0 13:12:20 28 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:12:20 28 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:12:24 28 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:12:25 28 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:12:25 28 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:12:25 28 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:12:25 28 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:12:25 28 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:12:27 28 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0289lz 13:12:27 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0289lz.x00 13:12:27 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0289lz.x01 13:12:27 28 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0289lz.r in process_file_group 13:12:27 28 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260289.log 13:12:27 28 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:12:27 28 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0289dz 13:12:27 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0289dz.x00 13:12:27 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0289dz.x01 13:12:27 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0289dz.x02 13:12:27 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0289dz.x03 13:12:27 28 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0289dz.r in process_file_group 13:12:27 28 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [289] 13:12:27 28 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [289] 13:12:27 28 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260289) for profiles 13:12:27 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:12:27 28 Feb 2017 UTC: INFO: QC.py(365): Changed (10/516) 2 182:185 188 223 243 249 254 to QC_PROBABLY_BAD because raw temperature spikes 13:12:27 28 Feb 2017 UTC: INFO: QC.py(408): Changed (11/516) 182:185 188 190 194 196 243 249 254 to QC_PROBABLY_BAD because raw conductivity spikes 13:12:27 28 Feb 2017 UTC: INFO: QC.py(180): Changed (10/516) 2 182:185 188 223 243 249 254 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:12:27 28 Feb 2017 UTC: INFO: QC.py(180): Changed (3/516) 190 194 196 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 13:12:27 28 Feb 2017 UTC: INFO: QC.py(365): Changed (10/516) 2 182:185 188 223 243 249 254 to QC_INTERPOLATED because temperature spikes 13:12:27 28 Feb 2017 UTC: INFO: QC.py(408): Changed (11/516) 182:185 188 190 194 196 243 249 254 to QC_INTERPOLATED because conductivity spikes 13:12:27 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/516) 221:226 to QC_BAD because slow apogee CT flow 13:12:27 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/516) 1:7 to QC_BAD because prior to dive start 13:12:27 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/516) 1:7 221:226 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:12:27 28 Feb 2017 UTC: INFO: QC.py(180): Changed (13/516) 1:7 221:226 to QC_BAD because changed corrected salin implies changed speed 13:12:28 28 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:12:28 28 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 289 interp_salinity data_points in_between 296 327 % suspect thermal-inertia points 325 326 13:12:28 28 Feb 2017 UTC: INFO: QC.py(180): Changed (8/516) 182:185 188 243 249 254 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 13:12:28 28 Feb 2017 UTC: INFO: QC.py(180): Changed (3/516) 190 194 196 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 13:12:28 28 Feb 2017 UTC: INFO: QC.py(180): Changed (8/516) 182:185 188 243 249 254 to QC_INTERPOLATED because changed corrected temp implies changed speed 13:12:28 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.50 cm/s 13:12:28 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.44 cm/s 13:12:28 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:12:28 28 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/516) 124 125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:12:28 28 Feb 2017 UTC: INFO: QC.py(180): Changed (1/516) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:12:28 28 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/516) 124 125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:12:28 28 Feb 2017 UTC: INFO: QC.py(180): Changed (1/516) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:12:28 28 Feb 2017 UTC: INFO: QC.py(180): Changed (13/516) 1:7 221:226 to QC_BAD because changed salinity implies changed optode oxygen 13:12:28 28 Feb 2017 UTC: INFO: QC.py(180): Changed (1/516) 196 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 13:12:28 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:12:28 28 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:12:28 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:12:28 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 289: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.52% reduction 13:12:28 28 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.289 13:12:28 28 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:12:28 28 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:12:28 28 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:12:28 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:12:28 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:14:45 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 13:14:46 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:14:46 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:15:12 28 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:15:12 28 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:15:12 28 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:15:12 28 Feb 2017 UTC /home/sg626/p6260289.log /home/sg626/p6260289.eng /home/sg626/p6260289.asc /home/sg626/p6260289.pro /home/sg626/p6260289.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:15:12 28 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:15:12 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:15:12 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:15:12 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:15:12 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:15:12 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:15:12 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:15:12 28 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:15:12 28 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:15:12 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:15:12 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:15:12 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:15:12 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:15:12 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:15:12 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:15:12 28 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:15:12 28 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:15:12 28 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:15:12 28 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:15:12 28 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:15:12 28 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:15:12 28 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:15:12 28 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:15:12 28 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 13:15:12 28 Feb 2017 UTC 16:20:47 28 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 20786 16:20:47 28 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:23:30 28 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 20841 16:23:30 28 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:23:30 28 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:23:30 28 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:23:30 28 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:23:30 28 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170228062330 ] 16:23:30 28 Feb 2017 UTC: INFO: Base.py(1333): PID:20849 16:23:30 28 Feb 2017 UTC: INFO: Base.py(1375): Started processing 16:23:30 28 Feb 2017 UTC 16:23:30 28 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:23:31 28 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:23:31 28 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:23:31 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:23:31 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:290 calls_made:1 call_cycle:0 16:23:31 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:23:31 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:290 calls_made:1 call_cycle:0 16:23:31 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:23:31 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:290 calls_made:1 call_cycle:0 16:23:31 28 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:290 calls_made:1 call_cycle:0 2307.2120 -15659.0120 02/28/17 16:18:30 UTC) to sdrifter@soest.hawaii.edu 16:23:31 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:290 calls_made:1 call_cycle:0 16:23:31 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:23:31 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:290 calls_made:1 call_cycle:0 16:23:31 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:23:31 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:290 calls_made:1 call_cycle:0 16:23:31 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:23:31 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:290 calls_made:1 call_cycle:0 16:23:31 28 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:23:31 28 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:23:36 28 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:23:37 28 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:23:37 28 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:23:37 28 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:23:37 28 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:23:37 28 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:23:38 28 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0290lz 16:23:38 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0290lz.x00 16:23:38 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0290lz.x01 16:23:38 28 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0290lz.r in process_file_group 16:23:38 28 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260290.log 16:23:38 28 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:23:38 28 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0290dz 16:23:38 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0290dz.x00 16:23:38 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0290dz.x01 16:23:38 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0290dz.x02 16:23:38 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0290dz.x03 16:23:38 28 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0290dz.r in process_file_group 16:23:39 28 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [290] 16:23:39 28 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [290] 16:23:39 28 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260290) for profiles 16:23:39 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:23:39 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/558) 556:558 to QC_BAD because CT out of water 16:23:39 28 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.158m) 16:23:39 28 Feb 2017 UTC: INFO: QC.py(365): Changed (4/558) 4 5 190 240 to QC_PROBABLY_BAD because raw temperature spikes 16:23:39 28 Feb 2017 UTC: INFO: QC.py(377): Changed (2/558) 557 558 to QC_BAD because raw salinity below bound 16:23:39 28 Feb 2017 UTC: INFO: QC.py(408): Changed (2/558) 190 240 to QC_PROBABLY_BAD because raw conductivity spikes 16:23:39 28 Feb 2017 UTC: INFO: QC.py(180): Changed (4/558) 4 5 190 240 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:23:39 28 Feb 2017 UTC: INFO: QC.py(180): Changed (1/558) 556 to QC_BAD because changed raw cond implies changed raw salinity 16:23:39 28 Feb 2017 UTC: INFO: QC.py(365): Changed (4/558) 4 5 190 240 to QC_INTERPOLATED because temperature spikes 16:23:39 28 Feb 2017 UTC: INFO: QC.py(377): Changed (2/558) 557 558 to QC_BAD because salinity below bound 16:23:39 28 Feb 2017 UTC: INFO: QC.py(408): Changed (2/558) 190 240 to QC_INTERPOLATED because conductivity spikes 16:23:39 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/558) 221:226 to QC_BAD because slow apogee CT flow 16:23:39 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/558) 1:7 to QC_BAD because prior to dive start 16:23:39 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/558) 1:7 221:226 556:558 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:23:39 28 Feb 2017 UTC: INFO: QC.py(180): Changed (16/558) 1:7 221:226 556:558 to QC_BAD because changed corrected salin implies changed speed 16:23:40 28 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:23:40 28 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 290 interp_salinity data_points in_between 276 338 % suspect thermal-inertia points 324:329 16:23:40 28 Feb 2017 UTC: INFO: QC.py(180): Changed (2/558) 190 240 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 16:23:40 28 Feb 2017 UTC: INFO: QC.py(180): Changed (2/558) 190 240 to QC_INTERPOLATED because changed corrected temp implies changed speed 16:23:40 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.50 cm/s 16:23:40 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.03 cm/s 16:23:40 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:23:40 28 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (166/558) 119 120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:23:40 28 Feb 2017 UTC: INFO: QC.py(180): Changed (2/558) 4 5 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:23:40 28 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (166/558) 119 120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:23:40 28 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/558) 7 to QC_BAD because bad aa4330 oyxgen 16:23:40 28 Feb 2017 UTC: INFO: QC.py(180): Changed (2/558) 4 5 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:23:40 28 Feb 2017 UTC: INFO: QC.py(180): Changed (15/558) 1:6 221:226 556:558 to QC_BAD because changed salinity implies changed optode oxygen 16:23:40 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:23:40 28 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:23:40 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:23:40 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 290: Data set size for profile, binned and kkyy files reduced by 16 points, a 2.87% reduction 16:23:40 28 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.290 16:23:40 28 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:23:40 28 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:23:40 28 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:23:40 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:23:40 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:25:58 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 16:25:59 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:25:59 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:26:26 28 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:26:26 28 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:26:26 28 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:26:26 28 Feb 2017 UTC /home/sg626/p6260290.log /home/sg626/p6260290.eng /home/sg626/p6260290.asc /home/sg626/p6260290.pro /home/sg626/p6260290.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:26:26 28 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:26:26 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:26:26 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:26:26 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:26:26 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:26:26 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:26:26 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:26:26 28 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:26:26 28 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:26:26 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:26:26 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:26:26 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:26:26 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:26:26 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:26:26 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:26:26 28 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:26:26 28 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:26:26 28 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:26:26 28 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:26:26 28 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:26:26 28 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:26:26 28 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:26:26 28 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:26:26 28 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 16:26:26 28 Feb 2017 UTC 19:28:35 28 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 25868 19:28:35 28 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:31:20 28 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 26070 19:31:20 28 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:31:20 28 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:31:20 28 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:31:20 28 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:31:20 28 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170228093119 ] 19:31:20 28 Feb 2017 UTC: INFO: Base.py(1333): PID:26077 19:31:20 28 Feb 2017 UTC: INFO: Base.py(1375): Started processing 19:31:20 28 Feb 2017 UTC 19:31:20 28 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:31:21 28 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:31:21 28 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:31:21 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:31:21 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:291 calls_made:2 call_cycle:0 19:31:21 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:31:21 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:291 calls_made:2 call_cycle:0 19:31:21 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:31:21 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:291 calls_made:2 call_cycle:0 19:31:21 28 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:291 calls_made:2 call_cycle:0 2307.3410 -15700.3670 02/28/17 19:24:49 UTC) to sdrifter@soest.hawaii.edu 19:31:21 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:291 calls_made:2 call_cycle:0 19:31:21 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:31:21 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:291 calls_made:2 call_cycle:0 19:31:21 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:31:21 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:291 calls_made:2 call_cycle:0 19:31:21 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:31:21 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:291 calls_made:2 call_cycle:0 19:31:21 28 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:31:21 28 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:31:26 28 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:31:26 28 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:31:26 28 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:31:26 28 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:31:26 28 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:31:26 28 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:31:28 28 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0291lz 19:31:28 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0291lz.x00 19:31:28 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0291lz.x01 19:31:28 28 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0291lz.r in process_file_group 19:31:28 28 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260291.log 19:31:28 28 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:31:28 28 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0291dz 19:31:28 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0291dz.x00 19:31:28 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0291dz.x01 19:31:28 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0291dz.x02 19:31:28 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0291dz.x03 19:31:28 28 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0291dz.r in process_file_group 19:31:28 28 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [291] 19:31:28 28 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [291] 19:31:28 28 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260291) for profiles 19:31:28 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 19:31:28 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/519) 519 to QC_BAD because CT out of water 19:31:28 28 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.090m) 19:31:28 28 Feb 2017 UTC: INFO: QC.py(365): Changed (8/519) 2 182 183 191:194 250 to QC_PROBABLY_BAD because raw temperature spikes 19:31:28 28 Feb 2017 UTC: INFO: QC.py(408): Changed (8/519) 182 183 191:194 250 256 to QC_PROBABLY_BAD because raw conductivity spikes 19:31:28 28 Feb 2017 UTC: INFO: QC.py(180): Changed (8/519) 2 182 183 191:194 250 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:31:28 28 Feb 2017 UTC: INFO: QC.py(180): Changed (1/519) 256 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 19:31:28 28 Feb 2017 UTC: INFO: QC.py(180): Changed (1/519) 519 to QC_BAD because changed raw cond implies changed raw salinity 19:31:28 28 Feb 2017 UTC: INFO: QC.py(365): Changed (8/519) 2 182 183 191:194 250 to QC_INTERPOLATED because temperature spikes 19:31:28 28 Feb 2017 UTC: INFO: QC.py(408): Changed (8/519) 182 183 191:194 250 256 to QC_INTERPOLATED because conductivity spikes 19:31:28 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/519) 223:228 to QC_BAD because slow apogee CT flow 19:31:28 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/519) 1:6 to QC_BAD because prior to dive start 19:31:28 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/519) 1:6 223:228 519 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:31:28 28 Feb 2017 UTC: INFO: QC.py(180): Changed (13/519) 1:6 223:228 519 to QC_BAD because changed corrected salin implies changed speed 19:31:29 28 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:31:29 28 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 291 interp_salinity data_points in_between 257 341 % suspect thermal-inertia points 326 329 330 332 336:341 19:31:29 28 Feb 2017 UTC: INFO: QC.py(180): Changed (7/519) 182 183 191:194 250 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 19:31:29 28 Feb 2017 UTC: INFO: QC.py(180): Changed (1/519) 256 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 19:31:29 28 Feb 2017 UTC: INFO: QC.py(180): Changed (7/519) 182 183 191:194 250 to QC_INTERPOLATED because changed corrected temp implies changed speed 19:31:29 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 34.21 cm/s 19:31:29 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.77 cm/s 19:31:29 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:31:29 28 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (165/519) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:31:29 28 Feb 2017 UTC: INFO: QC.py(180): Changed (2/519) 2 191 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 19:31:29 28 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (165/519) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 19:31:29 28 Feb 2017 UTC: INFO: QC.py(180): Changed (2/519) 2 191 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 19:31:29 28 Feb 2017 UTC: INFO: QC.py(180): Changed (13/519) 1:6 223:228 519 to QC_BAD because changed salinity implies changed optode oxygen 19:31:29 28 Feb 2017 UTC: INFO: QC.py(180): Changed (1/519) 256 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 19:31:29 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:31:29 28 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:31:29 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 19:31:29 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 291: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.50% reduction 19:31:29 28 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.291 19:31:29 28 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:31:29 28 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:31:29 28 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:31:30 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 19:31:30 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 19:33:48 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 19:33:49 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 19:33:49 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 19:34:15 28 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:34:15 28 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:34:15 28 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:34:15 28 Feb 2017 UTC /home/sg626/p6260291.log /home/sg626/p6260291.eng /home/sg626/p6260291.asc /home/sg626/p6260291.pro /home/sg626/p6260291.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 19:34:15 28 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:34:15 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:34:15 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:34:15 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:34:15 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:34:15 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:34:15 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:34:15 28 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:34:15 28 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:34:15 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:34:15 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:34:15 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:34:15 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:34:15 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:34:15 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:34:15 28 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:34:15 28 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:34:15 28 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:34:15 28 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:34:15 28 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:34:15 28 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:34:15 28 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:34:15 28 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:34:15 28 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 19:34:15 28 Feb 2017 UTC 22:39:33 28 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 31535 22:39:33 28 Feb 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:42:16 28 Feb 2017 UTC: INFO: BaseLog.py(77): Process id = 31726 22:42:16 28 Feb 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:42:16 28 Feb 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:42:16 28 Feb 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:42:16 28 Feb 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:42:16 28 Feb 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170228124215 ] 22:42:16 28 Feb 2017 UTC: INFO: Base.py(1333): PID:31733 22:42:16 28 Feb 2017 UTC: INFO: Base.py(1375): Started processing 22:42:16 28 Feb 2017 UTC 22:42:16 28 Feb 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:42:17 28 Feb 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:42:17 28 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:42:17 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:42:17 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:292 calls_made:1 call_cycle:0 22:42:17 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:42:17 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:292 calls_made:1 call_cycle:0 22:42:17 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:42:17 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:292 calls_made:1 call_cycle:0 22:42:17 28 Feb 2017 UTC: INFO: Base.py(975): Sending GPS (dive:292 calls_made:1 call_cycle:0 2307.6790 -15701.4810 02/28/17 22:37:30 UTC) to sdrifter@soest.hawaii.edu 22:42:17 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:292 calls_made:1 call_cycle:0 22:42:17 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:42:17 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:292 calls_made:1 call_cycle:0 22:42:17 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:42:17 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:292 calls_made:1 call_cycle:0 22:42:17 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:42:17 28 Feb 2017 UTC: INFO: CommLog.py(51): prefix:dive:292 calls_made:1 call_cycle:0 22:42:17 28 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:42:17 28 Feb 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:42:22 28 Feb 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:42:22 28 Feb 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:42:22 28 Feb 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:42:22 28 Feb 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:42:22 28 Feb 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:42:22 28 Feb 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:42:24 28 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0292lz 22:42:24 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0292lz.x00 22:42:24 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0292lz.x01 22:42:24 28 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0292lz.r in process_file_group 22:42:24 28 Feb 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260292.log 22:42:24 28 Feb 2017 UTC: INFO: Base.py(265): fragment_size = 4096 22:42:24 28 Feb 2017 UTC: INFO: Base.py(368): Processing ./sg0292dz 22:42:24 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0292dz.x00 22:42:24 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0292dz.x01 22:42:24 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0292dz.x02 22:42:24 28 Feb 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0292dz.x03 22:42:24 28 Feb 2017 UTC: INFO: Base.py(472): Processing ./sg0292dz.r in process_file_group 22:42:24 28 Feb 2017 UTC: INFO: Base.py(1622): Processed dive(s) [292] 22:42:24 28 Feb 2017 UTC: INFO: Base.py(1656): Dives to process = [292] 22:42:24 28 Feb 2017 UTC: INFO: Base.py(1719): Processing (./p6260292) for profiles 22:42:24 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 22:42:25 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/563) 563 to QC_BAD because CT out of water 22:42:25 28 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.126m) 22:42:25 28 Feb 2017 UTC: INFO: QC.py(365): Changed (8/563) 2 3 189 199 200 224 244 245 to QC_PROBABLY_BAD because raw temperature spikes 22:42:25 28 Feb 2017 UTC: INFO: QC.py(408): Changed (6/563) 189 199 200 244 245 250 to QC_PROBABLY_BAD because raw conductivity spikes 22:42:25 28 Feb 2017 UTC: INFO: QC.py(180): Changed (8/563) 2 3 189 199 200 224 244 245 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 22:42:25 28 Feb 2017 UTC: INFO: QC.py(180): Changed (1/563) 250 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 22:42:25 28 Feb 2017 UTC: INFO: QC.py(180): Changed (1/563) 563 to QC_BAD because changed raw cond implies changed raw salinity 22:42:25 28 Feb 2017 UTC: INFO: QC.py(365): Changed (8/563) 2 3 189 199 200 224 244 245 to QC_INTERPOLATED because temperature spikes 22:42:25 28 Feb 2017 UTC: INFO: QC.py(408): Changed (6/563) 189 199 200 244 245 250 to QC_INTERPOLATED because conductivity spikes 22:42:25 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/563) 222:227 to QC_BAD because slow apogee CT flow 22:42:25 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/563) 1:6 to QC_BAD because prior to dive start 22:42:25 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/563) 1:6 222:227 563 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:42:25 28 Feb 2017 UTC: INFO: QC.py(180): Changed (13/563) 1:6 222:227 563 to QC_BAD because changed corrected salin implies changed speed 22:42:25 28 Feb 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:42:25 28 Feb 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 292 interp_salinity data_points in_between 290 335 % suspect thermal-inertia points 331 332 22:42:25 28 Feb 2017 UTC: INFO: QC.py(180): Changed (5/563) 189 199 200 244 245 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 22:42:25 28 Feb 2017 UTC: INFO: QC.py(180): Changed (1/563) 250 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 22:42:25 28 Feb 2017 UTC: INFO: QC.py(180): Changed (5/563) 189 199 200 244 245 to QC_INTERPOLATED because changed corrected temp implies changed speed 22:42:25 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.95 cm/s 22:42:25 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.47 cm/s 22:42:25 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:42:25 28 Feb 2017 UTC: INFO: sbe43_ext.py(236): Changed (163/563) 123:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:42:25 28 Feb 2017 UTC: INFO: QC.py(180): Changed (2/563) 2 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 22:42:25 28 Feb 2017 UTC: INFO: aa4330_ext.py(316): Changed (163/563) 123:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 22:42:25 28 Feb 2017 UTC: INFO: aa4330_ext.py(320): Changed (3/563) 561:563 to QC_BAD because bad aa4330 oyxgen 22:42:25 28 Feb 2017 UTC: INFO: QC.py(180): Changed (2/563) 2 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 22:42:25 28 Feb 2017 UTC: INFO: QC.py(180): Changed (12/563) 1:6 222:227 to QC_BAD because changed salinity implies changed optode oxygen 22:42:25 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:42:25 28 Feb 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 22:42:25 28 Feb 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 22:42:26 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 292: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.31% reduction 22:42:26 28 Feb 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.292 22:42:26 28 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:42:26 28 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:42:26 28 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:42:26 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 22:42:26 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 22:44:44 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 22:44:45 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 22:44:45 28 Feb 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 22:45:11 28 Feb 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:45:11 28 Feb 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:45:11 28 Feb 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:45:11 28 Feb 2017 UTC /home/sg626/p6260292.log /home/sg626/p6260292.eng /home/sg626/p6260292.asc /home/sg626/p6260292.pro /home/sg626/p6260292.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 22:45:11 28 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:45:11 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:45:11 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:45:11 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:45:11 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:45:11 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:45:11 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:45:11 28 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:45:11 28 Feb 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:45:11 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:45:11 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:45:11 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:45:11 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:45:11 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:45:11 28 Feb 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:45:11 28 Feb 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:45:11 28 Feb 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:45:11 28 Feb 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:45:11 28 Feb 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:45:11 28 Feb 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:45:11 28 Feb 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:45:11 28 Feb 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:45:11 28 Feb 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:45:11 28 Feb 2017 UTC: INFO: Base.py(2265): Finished processing 22:45:11 28 Feb 2017 UTC 01:44:09 01 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 4626 01:44:09 01 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:46:53 01 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 4748 01:46:53 01 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:46:53 01 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:46:53 01 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:46:53 01 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:46:53 01 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170228154652 ] 01:46:53 01 Mar 2017 UTC: INFO: Base.py(1333): PID:4756 01:46:53 01 Mar 2017 UTC: INFO: Base.py(1375): Started processing 01:46:53 01 Mar 2017 UTC 01:46:53 01 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:46:54 01 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:46:54 01 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:46:54 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:46:54 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:293 calls_made:1 call_cycle:0 01:46:54 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:46:54 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:293 calls_made:1 call_cycle:0 01:46:54 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:46:54 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:293 calls_made:1 call_cycle:0 01:46:54 01 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:293 calls_made:1 call_cycle:0 2308.4610 -15701.4970 03/01/17 01:42:07 UTC) to sdrifter@soest.hawaii.edu 01:46:54 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:293 calls_made:1 call_cycle:0 01:46:54 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:46:54 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:293 calls_made:1 call_cycle:0 01:46:54 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:46:54 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:293 calls_made:1 call_cycle:0 01:46:54 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:46:54 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:293 calls_made:1 call_cycle:0 01:46:54 01 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:46:54 01 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:46:59 01 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:47:00 01 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:47:00 01 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:47:00 01 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:47:00 01 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:47:00 01 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:47:01 01 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0293lz 01:47:01 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0293lz.x00 01:47:01 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0293lz.x01 01:47:01 01 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0293lz.r in process_file_group 01:47:01 01 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260293.log 01:47:01 01 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:47:01 01 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0293dz 01:47:01 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0293dz.x00 01:47:01 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0293dz.x01 01:47:01 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0293dz.x02 01:47:01 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0293dz.x03 01:47:01 01 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0293dz.r in process_file_group 01:47:01 01 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [293] 01:47:01 01 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [293] 01:47:02 01 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260293) for profiles 01:47:02 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:47:02 01 Mar 2017 UTC: INFO: QC.py(365): Changed (19/556) 180 181 185 187:189 196 198 199 201 202 224 241:243 ... to QC_PROBABLY_BAD because raw temperature spikes 01:47:02 01 Mar 2017 UTC: INFO: QC.py(408): Changed (11/556) 180 181 185 187 201 202 241 249 250 256 258 to QC_PROBABLY_BAD because raw conductivity spikes 01:47:02 01 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(963): Restarting anomaly after 25.48m: -0.3133 at 245.89m (131) 01:47:02 01 Mar 2017 UTC: INFO: QC.py(180): Changed (19/556) 180 181 185 187:189 196 198 199 201 202 224 241:243 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:47:02 01 Mar 2017 UTC: INFO: QC.py(365): Changed (19/556) 180 181 185 187:189 196 198 199 201 202 224 241:243 ... to QC_INTERPOLATED because temperature spikes 01:47:02 01 Mar 2017 UTC: INFO: QC.py(408): Changed (11/556) 180 181 185 187 201 202 241 249 250 256 258 to QC_INTERPOLATED because conductivity spikes 01:47:02 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/556) 222:227 to QC_BAD because slow apogee CT flow 01:47:02 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/556) 1:6 to QC_BAD because prior to dive start 01:47:02 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/556) 1:6 222:227 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:47:02 01 Mar 2017 UTC: INFO: QC.py(180): Changed (12/556) 1:6 222:227 to QC_BAD because changed corrected salin implies changed speed 01:47:02 01 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:47:02 01 Mar 2017 UTC: INFO: QC.py(180): Changed (18/556) 180 181 185 187:189 196 198 199 201 202 241:243 ... to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 01:47:02 01 Mar 2017 UTC: INFO: QC.py(180): Changed (18/556) 180 181 185 187:189 196 198 199 201 202 241:243 ... to QC_INTERPOLATED because changed corrected temp implies changed speed 01:47:02 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.22 cm/s 01:47:02 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.14 cm/s 01:47:02 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:47:02 01 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (156/556) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:47:02 01 Mar 2017 UTC: INFO: QC.py(180): Changed (5/556) 181 196 201 241 256 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 01:47:02 01 Mar 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/556) 556 to QC_BAD because slow flow in SBE43 01:47:02 01 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (156/556) 125 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 01:47:02 01 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/556) 9 to QC_BAD because bad aa4330 oyxgen 01:47:02 01 Mar 2017 UTC: INFO: QC.py(180): Changed (5/556) 181 196 201 241 256 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 01:47:02 01 Mar 2017 UTC: INFO: QC.py(180): Changed (12/556) 1:6 222:227 to QC_BAD because changed salinity implies changed optode oxygen 01:47:02 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:47:02 01 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:47:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:47:03 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 293: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.16% reduction 01:47:03 01 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.293 01:47:03 01 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:47:03 01 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:47:03 01 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:47:03 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:47:03 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 01:49:22 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 01:49:23 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 01:49:23 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 01:49:50 01 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:49:50 01 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:49:50 01 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:49:50 01 Mar 2017 UTC /home/sg626/p6260293.log /home/sg626/p6260293.eng /home/sg626/p6260293.asc /home/sg626/p6260293.pro /home/sg626/p6260293.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 01:49:50 01 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:49:50 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:49:50 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:49:50 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:49:50 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:49:50 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:49:50 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:49:50 01 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:49:50 01 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:49:50 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:49:50 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:49:50 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:49:50 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:49:50 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:49:50 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:49:50 01 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:49:50 01 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:49:50 01 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:49:50 01 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:49:50 01 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:49:50 01 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:49:50 01 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:49:50 01 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:49:50 01 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 01:49:50 01 Mar 2017 UTC 04:43:53 01 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9836 04:43:53 01 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:46:37 01 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9968 04:46:37 01 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:46:37 01 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:46:37 01 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:46:37 01 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:46:37 01 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170228184637 ] 04:46:37 01 Mar 2017 UTC: INFO: Base.py(1333): PID:9975 04:46:37 01 Mar 2017 UTC: INFO: Base.py(1375): Started processing 04:46:37 01 Mar 2017 UTC 04:46:37 01 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:46:38 01 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:46:38 01 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:46:38 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:46:38 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:294 calls_made:1 call_cycle:0 04:46:38 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:46:38 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:294 calls_made:1 call_cycle:0 04:46:38 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:46:38 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:294 calls_made:1 call_cycle:0 04:46:38 01 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:294 calls_made:1 call_cycle:0 2307.0570 -15702.2920 03/01/17 04:41:48 UTC) to sdrifter@soest.hawaii.edu 04:46:38 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:294 calls_made:1 call_cycle:0 04:46:38 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:46:38 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:294 calls_made:1 call_cycle:0 04:46:38 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:46:38 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:294 calls_made:1 call_cycle:0 04:46:38 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:46:38 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:294 calls_made:1 call_cycle:0 04:46:38 01 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:46:38 01 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:46:43 01 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:46:44 01 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:46:44 01 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:46:44 01 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:46:44 01 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:46:44 01 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:46:45 01 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0294lz 04:46:45 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0294lz.x00 04:46:45 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0294lz.x01 04:46:45 01 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0294lz.r in process_file_group 04:46:45 01 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260294.log 04:46:45 01 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:46:45 01 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0294dz 04:46:45 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0294dz.x00 04:46:45 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0294dz.x01 04:46:45 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0294dz.x02 04:46:45 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0294dz.x03 04:46:45 01 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0294dz.r in process_file_group 04:46:46 01 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [294] 04:46:46 01 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [294] 04:46:46 01 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260294) for profiles 04:46:46 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 04:46:46 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/526) 526 to QC_BAD because CT out of water 04:46:46 01 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.034m) 04:46:46 01 Mar 2017 UTC: INFO: QC.py(365): Changed (5/526) 2 3 174 175 242 to QC_PROBABLY_BAD because raw temperature spikes 04:46:46 01 Mar 2017 UTC: INFO: QC.py(408): Changed (5/526) 174 175 177 196 242 to QC_PROBABLY_BAD because raw conductivity spikes 04:46:46 01 Mar 2017 UTC: INFO: QC.py(180): Changed (5/526) 2 3 174 175 242 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:46:46 01 Mar 2017 UTC: INFO: QC.py(180): Changed (2/526) 177 196 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 04:46:46 01 Mar 2017 UTC: INFO: QC.py(180): Changed (1/526) 526 to QC_BAD because changed raw cond implies changed raw salinity 04:46:46 01 Mar 2017 UTC: INFO: QC.py(365): Changed (5/526) 2 3 174 175 242 to QC_INTERPOLATED because temperature spikes 04:46:46 01 Mar 2017 UTC: INFO: QC.py(408): Changed (5/526) 174 175 177 196 242 to QC_INTERPOLATED because conductivity spikes 04:46:46 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/526) 219:224 to QC_BAD because slow apogee CT flow 04:46:46 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/526) 1:6 to QC_BAD because prior to dive start 04:46:46 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/526) 1:6 219:224 526 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:46:46 01 Mar 2017 UTC: INFO: QC.py(180): Changed (13/526) 1:6 219:224 526 to QC_BAD because changed corrected salin implies changed speed 04:46:46 01 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:46:47 01 Mar 2017 UTC: INFO: QC.py(180): Changed (3/526) 174 175 242 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 04:46:47 01 Mar 2017 UTC: INFO: QC.py(180): Changed (2/526) 177 196 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 04:46:47 01 Mar 2017 UTC: INFO: QC.py(180): Changed (3/526) 174 175 242 to QC_INTERPOLATED because changed corrected temp implies changed speed 04:46:47 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.68 cm/s 04:46:47 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.33 cm/s 04:46:47 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:46:47 01 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (151/526) 124 125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:46:47 01 Mar 2017 UTC: INFO: QC.py(180): Changed (2/526) 2 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:46:47 01 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (151/526) 124 125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 04:46:47 01 Mar 2017 UTC: INFO: QC.py(180): Changed (2/526) 2 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:46:47 01 Mar 2017 UTC: INFO: QC.py(180): Changed (13/526) 1:6 219:224 526 to QC_BAD because changed salinity implies changed optode oxygen 04:46:47 01 Mar 2017 UTC: INFO: QC.py(180): Changed (1/526) 196 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 04:46:47 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:46:47 01 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:46:47 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 04:46:47 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 294: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.47% reduction 04:46:47 01 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.294 04:46:47 01 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:46:47 01 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:46:47 01 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:46:47 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 04:46:47 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 04:49:08 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 04:49:09 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 04:49:09 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 04:49:35 01 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:49:35 01 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:49:35 01 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:49:35 01 Mar 2017 UTC /home/sg626/p6260294.log /home/sg626/p6260294.eng /home/sg626/p6260294.asc /home/sg626/p6260294.pro /home/sg626/p6260294.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 04:49:35 01 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:49:35 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:49:35 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:49:35 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:49:35 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:49:35 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:49:35 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:49:35 01 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:49:35 01 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:49:35 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:49:35 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:49:35 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:49:35 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:49:35 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:49:35 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:49:35 01 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:49:35 01 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:49:35 01 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:49:35 01 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:49:35 01 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:49:35 01 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:49:35 01 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:49:35 01 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:49:35 01 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 04:49:35 01 Mar 2017 UTC 07:50:42 01 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 15858 07:50:42 01 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:53:24 01 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 15905 07:53:24 01 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:53:24 01 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:53:24 01 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:53:24 01 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:53:24 01 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170228215323 ] 07:53:24 01 Mar 2017 UTC: INFO: Base.py(1333): PID:15912 07:53:24 01 Mar 2017 UTC: INFO: Base.py(1375): Started processing 07:53:24 01 Mar 2017 UTC 07:53:24 01 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:53:25 01 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:53:25 01 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:53:25 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:53:25 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:295 calls_made:1 call_cycle:0 07:53:25 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:53:25 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:295 calls_made:1 call_cycle:0 07:53:25 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:53:25 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:295 calls_made:1 call_cycle:0 07:53:25 01 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:295 calls_made:1 call_cycle:0 2305.7750 -15703.5330 03/01/17 07:48:20 UTC) to sdrifter@soest.hawaii.edu 07:53:25 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:295 calls_made:1 call_cycle:0 07:53:25 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:53:25 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:295 calls_made:1 call_cycle:0 07:53:25 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:53:25 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:295 calls_made:1 call_cycle:0 07:53:25 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:53:25 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:295 calls_made:1 call_cycle:0 07:53:25 01 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:53:25 01 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:53:30 01 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:53:30 01 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:53:30 01 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:53:30 01 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:53:30 01 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:53:30 01 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:53:32 01 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0295lz 07:53:32 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0295lz.x00 07:53:32 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0295lz.x01 07:53:32 01 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0295lz.r in process_file_group 07:53:32 01 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260295.log 07:53:32 01 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:53:32 01 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0295dz 07:53:32 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0295dz.x00 07:53:32 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0295dz.x01 07:53:32 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0295dz.x02 07:53:32 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0295dz.x03 07:53:32 01 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0295dz.r in process_file_group 07:53:32 01 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [295] 07:53:32 01 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [295] 07:53:32 01 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260295) for profiles 07:53:32 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 07:53:32 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/543) 542 543 to QC_BAD because CT out of water 07:53:32 01 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.061m) 07:53:32 01 Mar 2017 UTC: INFO: QC.py(365): Changed (9/543) 175:177 193 194 221 243 253 254 to QC_PROBABLY_BAD because raw temperature spikes 07:53:33 01 Mar 2017 UTC: INFO: QC.py(408): Changed (11/543) 175:177 193 194 196 238 242 243 253 254 to QC_PROBABLY_BAD because raw conductivity spikes 07:53:33 01 Mar 2017 UTC: INFO: QC.py(180): Changed (9/543) 175:177 193 194 221 243 253 254 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:53:33 01 Mar 2017 UTC: INFO: QC.py(180): Changed (3/543) 196 238 242 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 07:53:33 01 Mar 2017 UTC: INFO: QC.py(180): Changed (2/543) 542 543 to QC_BAD because changed raw cond implies changed raw salinity 07:53:33 01 Mar 2017 UTC: INFO: QC.py(365): Changed (9/543) 175:177 193 194 221 243 253 254 to QC_INTERPOLATED because temperature spikes 07:53:33 01 Mar 2017 UTC: INFO: QC.py(408): Changed (11/543) 175:177 193 194 196 238 242 243 253 254 to QC_INTERPOLATED because conductivity spikes 07:53:33 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/543) 219:224 to QC_BAD because slow apogee CT flow 07:53:33 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/543) 1:6 to QC_BAD because prior to dive start 07:53:33 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/543) 1:6 219:224 542 543 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:53:33 01 Mar 2017 UTC: INFO: QC.py(180): Changed (14/543) 1:6 219:224 542 543 to QC_BAD because changed corrected salin implies changed speed 07:53:33 01 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:53:33 01 Mar 2017 UTC: INFO: QC.py(180): Changed (8/543) 175:177 193 194 243 253 254 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 07:53:33 01 Mar 2017 UTC: INFO: QC.py(180): Changed (3/543) 196 238 242 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 07:53:33 01 Mar 2017 UTC: INFO: QC.py(180): Changed (8/543) 175:177 193 194 243 253 254 to QC_INTERPOLATED because changed corrected temp implies changed speed 07:53:33 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.78 cm/s 07:53:33 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.34 cm/s 07:53:33 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:53:33 01 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (163/543) 119 120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:53:33 01 Mar 2017 UTC: INFO: QC.py(180): Changed (2/543) 176 221 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:53:33 01 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (163/543) 119 120 122:125 127:130 132:135 137:140 142:145 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 07:53:33 01 Mar 2017 UTC: INFO: QC.py(180): Changed (2/543) 176 221 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:53:33 01 Mar 2017 UTC: INFO: QC.py(180): Changed (14/543) 1:6 219:224 542 543 to QC_BAD because changed salinity implies changed optode oxygen 07:53:33 01 Mar 2017 UTC: INFO: QC.py(180): Changed (1/543) 196 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 07:53:33 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:53:33 01 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:53:33 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 07:53:34 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 295: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.58% reduction 07:53:34 01 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.295 07:53:34 01 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:53:34 01 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:53:34 01 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:53:34 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 07:53:34 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:55:55 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 07:55:56 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:55:56 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:56:23 01 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:56:23 01 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:56:23 01 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:56:23 01 Mar 2017 UTC /home/sg626/p6260295.log /home/sg626/p6260295.eng /home/sg626/p6260295.asc /home/sg626/p6260295.pro /home/sg626/p6260295.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:56:23 01 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:56:23 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:56:23 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:56:23 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:56:23 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:56:23 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:56:23 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:56:23 01 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:56:23 01 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:56:23 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:56:23 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:56:23 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:56:23 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:56:23 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:56:23 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:56:23 01 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:56:23 01 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:56:23 01 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:56:23 01 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:56:23 01 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:56:23 01 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:56:23 01 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:56:23 01 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:56:23 01 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 07:56:23 01 Mar 2017 UTC 10:59:38 01 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 22190 10:59:38 01 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 11:02:28 01 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 22567 11:02:28 01 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:02:28 01 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 11:02:28 01 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 11:02:28 01 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:02:28 01 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170301010228 ] 11:02:28 01 Mar 2017 UTC: INFO: Base.py(1333): PID:22575 11:02:28 01 Mar 2017 UTC: INFO: Base.py(1375): Started processing 11:02:28 01 Mar 2017 UTC 11:02:28 01 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 11:02:29 01 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 11:02:29 01 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:02:29 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:02:29 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:296 calls_made:1 call_cycle:0 11:02:29 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:02:29 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:296 calls_made:1 call_cycle:0 11:02:29 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:02:29 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:296 calls_made:1 call_cycle:0 11:02:29 01 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:296 calls_made:1 call_cycle:0 2304.7600 -15704.4540 03/01/17 10:57:30 UTC) to sdrifter@soest.hawaii.edu 11:02:29 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:296 calls_made:1 call_cycle:0 11:02:29 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:02:29 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:296 calls_made:1 call_cycle:0 11:02:29 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:02:29 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:296 calls_made:1 call_cycle:0 11:02:29 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:02:29 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:296 calls_made:1 call_cycle:0 11:02:29 01 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:02:29 01 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:02:34 01 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:02:35 01 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:02:35 01 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 11:02:35 01 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:02:35 01 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:02:35 01 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 11:02:36 01 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0296lz 11:02:36 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0296lz.x00 11:02:36 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0296lz.x01 11:02:36 01 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0296lz.r in process_file_group 11:02:36 01 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260296.log 11:02:36 01 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 11:02:36 01 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0296dz 11:02:36 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0296dz.x00 11:02:36 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0296dz.x01 11:02:36 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0296dz.x02 11:02:36 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0296dz.x03 11:02:36 01 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0296dz.r in process_file_group 11:02:37 01 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [296] 11:02:37 01 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [296] 11:02:37 01 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260296) for profiles 11:02:37 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 11:02:37 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/563) 561:563 to QC_BAD because CT out of water 11:02:37 01 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.213m) 11:02:37 01 Mar 2017 UTC: INFO: QC.py(365): Changed (24/563) 2 3 173 175 177 178 182 188 189 191 194 195 241 ... to QC_PROBABLY_BAD because raw temperature spikes 11:02:37 01 Mar 2017 UTC: INFO: QC.py(408): Changed (18/563) 3 173 175 177 178 182 188 189 194 195 241 248:251 ... to QC_PROBABLY_BAD because raw conductivity spikes 11:02:37 01 Mar 2017 UTC: INFO: QC.py(180): Changed (24/563) 2 3 173 175 177 178 182 188 189 191 194 195 241 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 11:02:37 01 Mar 2017 UTC: INFO: QC.py(180): Changed (3/563) 561:563 to QC_BAD because changed raw cond implies changed raw salinity 11:02:37 01 Mar 2017 UTC: INFO: QC.py(365): Changed (24/563) 2 3 173 175 177 178 182 188 189 191 194 195 241 ... to QC_INTERPOLATED because temperature spikes 11:02:37 01 Mar 2017 UTC: INFO: QC.py(408): Changed (18/563) 3 173 175 177 178 182 188 189 194 195 241 248:251 ... to QC_INTERPOLATED because conductivity spikes 11:02:37 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/563) 219:224 to QC_BAD because slow apogee CT flow 11:02:37 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/563) 1:6 to QC_BAD because prior to dive start 11:02:37 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/563) 560 to QC_BAD because end of climb 11:02:37 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/563) 1:6 219:224 560:563 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 11:02:37 01 Mar 2017 UTC: INFO: QC.py(180): Changed (16/563) 1:6 219:224 560:563 to QC_BAD because changed corrected salin implies changed speed 11:02:38 01 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 11:02:38 01 Mar 2017 UTC: INFO: QC.py(180): Changed (20/563) 173 175 177 178 182 188 189 191 194 195 241 244 ... to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 11:02:38 01 Mar 2017 UTC: INFO: QC.py(180): Changed (20/563) 173 175 177 178 182 188 189 191 194 195 241 244 ... to QC_INTERPOLATED because changed corrected temp implies changed speed 11:02:38 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.89 cm/s 11:02:38 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.26 cm/s 11:02:38 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 11:02:38 01 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (162/563) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 11:02:38 01 Mar 2017 UTC: INFO: QC.py(180): Changed (7/563) 2 3 191 241 251 561 562 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 11:02:38 01 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (162/563) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 11:02:38 01 Mar 2017 UTC: INFO: QC.py(180): Changed (7/563) 2 3 191 241 251 561 562 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 11:02:38 01 Mar 2017 UTC: INFO: QC.py(180): Changed (16/563) 1:6 219:224 560:563 to QC_BAD because changed salinity implies changed optode oxygen 11:02:38 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 11:02:38 01 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 11:02:38 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 11:02:38 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 296: Data set size for profile, binned and kkyy files reduced by 16 points, a 2.84% reduction 11:02:38 01 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.296 11:02:38 01 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:02:38 01 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:02:38 01 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:02:38 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 11:02:38 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 11:04:59 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 11:05:00 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 11:05:00 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 11:05:27 01 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:05:27 01 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:05:27 01 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:05:27 01 Mar 2017 UTC /home/sg626/p6260296.log /home/sg626/p6260296.eng /home/sg626/p6260296.asc /home/sg626/p6260296.pro /home/sg626/p6260296.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 11:05:27 01 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:05:27 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:05:27 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:05:27 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:05:27 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:05:27 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:05:27 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:05:27 01 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:05:27 01 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:05:27 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:05:27 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:05:27 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:05:27 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:05:27 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:05:27 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:05:27 01 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:05:27 01 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 11:05:27 01 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 11:05:27 01 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 11:05:27 01 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 11:05:27 01 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:05:27 01 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:05:27 01 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:05:27 01 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 11:05:27 01 Mar 2017 UTC 14:10:01 01 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 27996 14:10:01 01 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:12:52 01 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 28203 14:12:52 01 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:12:52 01 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 14:12:52 01 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 14:12:52 01 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:12:52 01 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170301041252 ] 14:12:52 01 Mar 2017 UTC: INFO: Base.py(1333): PID:28212 14:12:52 01 Mar 2017 UTC: INFO: Base.py(1375): Started processing 14:12:52 01 Mar 2017 UTC 14:12:52 01 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 14:12:53 01 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 14:12:53 01 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:12:53 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:12:53 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:297 calls_made:1 call_cycle:0 14:12:53 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:12:53 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:297 calls_made:1 call_cycle:0 14:12:53 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:12:53 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:297 calls_made:1 call_cycle:0 14:12:53 01 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:297 calls_made:1 call_cycle:0 2303.6850 -15705.2100 03/01/17 14:07:30 UTC) to sdrifter@soest.hawaii.edu 14:12:53 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:297 calls_made:1 call_cycle:0 14:12:53 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:12:53 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:297 calls_made:1 call_cycle:0 14:12:53 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:12:53 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:297 calls_made:1 call_cycle:0 14:12:53 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:12:53 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:297 calls_made:1 call_cycle:0 14:12:53 01 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:12:53 01 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:12:58 01 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:12:59 01 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:12:59 01 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 14:12:59 01 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:12:59 01 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:12:59 01 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 14:13:01 01 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0297lz 14:13:01 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0297lz.x00 14:13:01 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0297lz.x01 14:13:01 01 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0297lz.r in process_file_group 14:13:01 01 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260297.log 14:13:01 01 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 14:13:01 01 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0297dz 14:13:01 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0297dz.x00 14:13:01 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0297dz.x01 14:13:01 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0297dz.x02 14:13:01 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0297dz.x03 14:13:01 01 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0297dz.r in process_file_group 14:13:01 01 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [297] 14:13:01 01 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [297] 14:13:01 01 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260297) for profiles 14:13:01 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 14:13:01 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/582) 582 to QC_BAD because CT out of water 14:13:01 01 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.174m) 14:13:01 01 Mar 2017 UTC: INFO: QC.py(365): Changed (9/582) 181 191 194:196 221 253:255 to QC_PROBABLY_BAD because raw temperature spikes 14:13:01 01 Mar 2017 UTC: INFO: QC.py(408): Changed (8/582) 181 191 194:196 253:255 to QC_PROBABLY_BAD because raw conductivity spikes 14:13:01 01 Mar 2017 UTC: INFO: QC.py(180): Changed (9/582) 181 191 194:196 221 253:255 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:13:01 01 Mar 2017 UTC: INFO: QC.py(180): Changed (1/582) 582 to QC_BAD because changed raw cond implies changed raw salinity 14:13:01 01 Mar 2017 UTC: INFO: QC.py(365): Changed (9/582) 181 191 194:196 221 253:255 to QC_INTERPOLATED because temperature spikes 14:13:01 01 Mar 2017 UTC: INFO: QC.py(408): Changed (8/582) 181 191 194:196 253:255 to QC_INTERPOLATED because conductivity spikes 14:13:01 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/582) 219:224 to QC_BAD because slow apogee CT flow 14:13:01 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/582) 1:6 to QC_BAD because prior to dive start 14:13:01 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/582) 581 to QC_BAD because end of climb 14:13:01 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/582) 1:6 219:224 581 582 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:13:01 01 Mar 2017 UTC: INFO: QC.py(180): Changed (14/582) 1:6 219:224 581 582 to QC_BAD because changed corrected salin implies changed speed 14:13:02 01 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:13:02 01 Mar 2017 UTC: INFO: QC.py(180): Changed (8/582) 181 191 194:196 253:255 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 14:13:02 01 Mar 2017 UTC: INFO: QC.py(180): Changed (8/582) 181 191 194:196 253:255 to QC_INTERPOLATED because changed corrected temp implies changed speed 14:13:02 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.36 cm/s 14:13:02 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.25 cm/s 14:13:02 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:13:02 01 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/582) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:13:02 01 Mar 2017 UTC: INFO: QC.py(180): Changed (4/582) 181 191 196 221 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 14:13:02 01 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/582) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 14:13:02 01 Mar 2017 UTC: INFO: QC.py(180): Changed (4/582) 181 191 196 221 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 14:13:02 01 Mar 2017 UTC: INFO: QC.py(180): Changed (14/582) 1:6 219:224 581 582 to QC_BAD because changed salinity implies changed optode oxygen 14:13:02 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:13:02 01 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:13:02 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 14:13:02 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 297: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.41% reduction 14:13:02 01 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.297 14:13:02 01 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:13:02 01 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:13:02 01 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:13:02 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 14:13:02 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 14:15:25 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 14:15:26 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 14:15:26 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 14:15:53 01 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:15:53 01 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:15:53 01 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:15:53 01 Mar 2017 UTC /home/sg626/p6260297.log /home/sg626/p6260297.eng /home/sg626/p6260297.asc /home/sg626/p6260297.pro /home/sg626/p6260297.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 14:15:53 01 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:15:53 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:15:53 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:15:53 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:15:53 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:15:53 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:15:53 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:15:53 01 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:15:53 01 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:15:53 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:15:53 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:15:53 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:15:53 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:15:53 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:15:53 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:15:53 01 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:15:53 01 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:15:53 01 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:15:53 01 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:15:53 01 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:15:53 01 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:15:53 01 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:15:53 01 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:15:53 01 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 14:15:53 01 Mar 2017 UTC 17:21:27 01 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 1177 17:21:27 01 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:24:25 01 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 1306 17:24:25 01 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:24:25 01 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:24:25 01 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:24:25 01 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:24:25 01 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170301072425 ] 17:24:25 01 Mar 2017 UTC: INFO: Base.py(1333): PID:1313 17:24:25 01 Mar 2017 UTC: INFO: Base.py(1375): Started processing 17:24:25 01 Mar 2017 UTC 17:24:25 01 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:24:26 01 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:24:26 01 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:24:26 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:24:26 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:298 calls_made:1 call_cycle:0 17:24:26 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:24:26 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:298 calls_made:1 call_cycle:0 17:24:26 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:24:26 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:298 calls_made:1 call_cycle:0 17:24:26 01 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:298 calls_made:1 call_cycle:0 2303.5420 -15706.1610 03/01/17 17:19:22 UTC) to sdrifter@soest.hawaii.edu 17:24:26 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:298 calls_made:1 call_cycle:0 17:24:26 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:24:26 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:298 calls_made:1 call_cycle:0 17:24:26 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:24:26 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:298 calls_made:1 call_cycle:0 17:24:26 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:24:26 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:298 calls_made:1 call_cycle:0 17:24:26 01 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:24:26 01 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:24:31 01 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:24:32 01 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:24:32 01 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:24:32 01 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:24:32 01 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:24:32 01 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:24:34 01 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0298lz 17:24:34 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0298lz.x00 17:24:34 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0298lz.x01 17:24:34 01 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0298lz.r in process_file_group 17:24:34 01 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260298.log 17:24:34 01 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:24:34 01 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0298dz 17:24:34 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0298dz.x00 17:24:34 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0298dz.x01 17:24:34 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0298dz.x02 17:24:34 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0298dz.x03 17:24:34 01 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0298dz.r in process_file_group 17:24:34 01 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [298] 17:24:34 01 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [298] 17:24:34 01 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260298) for profiles 17:24:34 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:24:34 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/580) 579 580 to QC_BAD because CT out of water 17:24:34 01 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.144m) 17:24:34 01 Mar 2017 UTC: INFO: QC.py(365): Changed (12/580) 4 184 185 200 202 203 205 221 231 254 261 263 to QC_PROBABLY_BAD because raw temperature spikes 17:24:34 01 Mar 2017 UTC: INFO: QC.py(408): Changed (8/580) 184 185 200 205 221 254 261 263 to QC_PROBABLY_BAD because raw conductivity spikes 17:24:34 01 Mar 2017 UTC: INFO: QC.py(180): Changed (12/580) 4 184 185 200 202 203 205 221 231 254 261 263 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:24:34 01 Mar 2017 UTC: INFO: QC.py(180): Changed (2/580) 579 580 to QC_BAD because changed raw cond implies changed raw salinity 17:24:34 01 Mar 2017 UTC: INFO: QC.py(365): Changed (12/580) 4 184 185 200 202 203 205 221 231 254 261 263 to QC_INTERPOLATED because temperature spikes 17:24:34 01 Mar 2017 UTC: INFO: QC.py(408): Changed (8/580) 184 185 200 205 221 254 261 263 to QC_INTERPOLATED because conductivity spikes 17:24:34 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/580) 229:234 to QC_BAD because slow apogee CT flow 17:24:34 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/580) 1:7 to QC_BAD because prior to dive start 17:24:34 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/580) 1:7 229:234 579 580 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:24:34 01 Mar 2017 UTC: INFO: QC.py(180): Changed (15/580) 1:7 229:234 579 580 to QC_BAD because changed corrected salin implies changed speed 17:24:35 01 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:24:35 01 Mar 2017 UTC: INFO: QC.py(180): Changed (10/580) 184 185 200 202 203 205 221 254 261 263 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 17:24:35 01 Mar 2017 UTC: INFO: QC.py(180): Changed (10/580) 184 185 200 202 203 205 221 254 261 263 to QC_INTERPOLATED because changed corrected temp implies changed speed 17:24:35 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.40 cm/s 17:24:35 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.93 cm/s 17:24:35 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:24:35 01 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (161/580) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:24:35 01 Mar 2017 UTC: INFO: QC.py(180): Changed (4/580) 4 221 231 261 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:24:35 01 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (161/580) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:24:35 01 Mar 2017 UTC: INFO: QC.py(180): Changed (4/580) 4 221 231 261 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:24:35 01 Mar 2017 UTC: INFO: QC.py(180): Changed (15/580) 1:7 229:234 579 580 to QC_BAD because changed salinity implies changed optode oxygen 17:24:35 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:24:35 01 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:24:35 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:24:35 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 298: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.59% reduction 17:24:35 01 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.298 17:24:35 01 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:24:35 01 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:24:35 01 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:24:35 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:24:35 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:26:57 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 17:26:58 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:26:58 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:27:25 01 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:27:25 01 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:27:25 01 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:27:25 01 Mar 2017 UTC /home/sg626/p6260298.log /home/sg626/p6260298.eng /home/sg626/p6260298.asc /home/sg626/p6260298.pro /home/sg626/p6260298.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:27:25 01 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:27:25 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:27:25 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:27:25 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:27:25 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:27:25 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:27:25 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:27:25 01 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:27:25 01 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:27:25 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:27:25 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:27:25 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:27:25 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:27:25 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:27:25 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:27:25 01 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:27:25 01 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:27:25 01 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:27:25 01 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:27:25 01 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:27:25 01 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:27:25 01 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:27:25 01 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:27:25 01 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 17:27:25 01 Mar 2017 UTC 20:34:43 01 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 6331 20:34:43 01 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:37:36 01 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 6460 20:37:36 01 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:37:36 01 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:37:36 01 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:37:36 01 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:37:36 01 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170301103735 ] 20:37:36 01 Mar 2017 UTC: INFO: Base.py(1333): PID:6468 20:37:36 01 Mar 2017 UTC: INFO: Base.py(1375): Started processing 20:37:36 01 Mar 2017 UTC 20:37:36 01 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:37:37 01 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:37:37 01 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:37:37 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:37:37 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:299 calls_made:1 call_cycle:0 20:37:37 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:37:37 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:299 calls_made:1 call_cycle:0 20:37:37 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:37:37 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:299 calls_made:1 call_cycle:0 20:37:37 01 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:299 calls_made:1 call_cycle:0 2303.8510 -15707.2330 03/01/17 20:32:25 UTC) to sdrifter@soest.hawaii.edu 20:37:37 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:299 calls_made:1 call_cycle:0 20:37:37 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:37:37 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:299 calls_made:1 call_cycle:0 20:37:37 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:37:37 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:299 calls_made:1 call_cycle:0 20:37:37 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:37:37 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:299 calls_made:1 call_cycle:0 20:37:37 01 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:37:37 01 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:37:42 01 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:37:43 01 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:37:43 01 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:37:43 01 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:37:43 01 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:37:43 01 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:37:44 01 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0299lz 20:37:44 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0299lz.x00 20:37:44 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0299lz.x01 20:37:44 01 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0299lz.r in process_file_group 20:37:44 01 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260299.log 20:37:44 01 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:37:44 01 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0299dz 20:37:44 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0299dz.x00 20:37:44 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0299dz.x01 20:37:44 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0299dz.x02 20:37:44 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0299dz.x03 20:37:44 01 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0299dz.r in process_file_group 20:37:45 01 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [299] 20:37:45 01 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [299] 20:37:45 01 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260299) for profiles 20:37:45 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 20:37:45 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/576) 576 to QC_BAD because CT out of water 20:37:45 01 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.097m) 20:37:45 01 Mar 2017 UTC: INFO: QC.py(365): Changed (6/576) 3 4 189 193 196 197 to QC_PROBABLY_BAD because raw temperature spikes 20:37:45 01 Mar 2017 UTC: INFO: QC.py(408): Changed (6/576) 189 193 196 197 245 255 to QC_PROBABLY_BAD because raw conductivity spikes 20:37:45 01 Mar 2017 UTC: INFO: QC.py(180): Changed (6/576) 3 4 189 193 196 197 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 20:37:45 01 Mar 2017 UTC: INFO: QC.py(180): Changed (2/576) 245 255 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 20:37:45 01 Mar 2017 UTC: INFO: QC.py(180): Changed (1/576) 576 to QC_BAD because changed raw cond implies changed raw salinity 20:37:45 01 Mar 2017 UTC: INFO: QC.py(365): Changed (6/576) 3 4 189 193 196 197 to QC_INTERPOLATED because temperature spikes 20:37:45 01 Mar 2017 UTC: INFO: QC.py(408): Changed (6/576) 189 193 196 197 245 255 to QC_INTERPOLATED because conductivity spikes 20:37:45 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/576) 223:228 to QC_BAD because slow apogee CT flow 20:37:45 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/576) 1:6 to QC_BAD because prior to dive start 20:37:45 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/576) 1:6 223:228 576 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 20:37:45 01 Mar 2017 UTC: INFO: QC.py(180): Changed (13/576) 1:6 223:228 576 to QC_BAD because changed corrected salin implies changed speed 20:37:46 01 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 20:37:46 01 Mar 2017 UTC: INFO: QC.py(180): Changed (4/576) 189 193 196 197 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 20:37:46 01 Mar 2017 UTC: INFO: QC.py(180): Changed (2/576) 245 255 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 20:37:46 01 Mar 2017 UTC: INFO: QC.py(180): Changed (4/576) 189 193 196 197 to QC_INTERPOLATED because changed corrected temp implies changed speed 20:37:46 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.90 cm/s 20:37:46 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.42 cm/s 20:37:46 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 20:37:46 01 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (165/576) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 20:37:46 01 Mar 2017 UTC: INFO: QC.py(180): Changed (3/576) 3 4 196 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 20:37:46 01 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (165/576) 120 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 20:37:46 01 Mar 2017 UTC: INFO: QC.py(180): Changed (3/576) 3 4 196 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 20:37:46 01 Mar 2017 UTC: INFO: QC.py(180): Changed (13/576) 1:6 223:228 576 to QC_BAD because changed salinity implies changed optode oxygen 20:37:46 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 20:37:46 01 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 20:37:46 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 20:37:46 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 299: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.26% reduction 20:37:46 01 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.299 20:37:46 01 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:37:46 01 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:37:46 01 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:37:46 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 20:37:46 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 20:40:10 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 20:40:11 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 20:40:11 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 20:40:38 01 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:40:38 01 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:40:38 01 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:40:38 01 Mar 2017 UTC /home/sg626/p6260299.log /home/sg626/p6260299.eng /home/sg626/p6260299.asc /home/sg626/p6260299.pro /home/sg626/p6260299.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 20:40:38 01 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:40:38 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:40:38 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:40:38 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:40:38 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:40:38 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:40:38 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:40:38 01 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:40:38 01 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:40:38 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:40:38 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:40:38 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:40:38 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:40:38 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:40:38 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:40:38 01 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:40:38 01 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:40:38 01 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:40:38 01 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:40:38 01 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:40:38 01 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:40:38 01 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:40:38 01 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:40:38 01 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 20:40:38 01 Mar 2017 UTC 23:40:58 01 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 11304 23:40:58 01 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 23:42:19 01 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 11398 23:42:19 01 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:42:19 01 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:42:19 01 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:42:19 01 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:42:19 01 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170301134218 ] 23:42:19 01 Mar 2017 UTC: INFO: Base.py(1333): PID:11405 23:42:19 01 Mar 2017 UTC: INFO: Base.py(1375): Started processing 23:42:19 01 Mar 2017 UTC 23:42:19 01 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:42:20 01 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:42:20 01 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:42:20 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:42:20 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:300 calls_made:1 call_cycle:0 23:42:20 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:42:20 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:300 calls_made:1 call_cycle:0 23:42:20 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:42:20 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:300 calls_made:1 call_cycle:0 23:42:20 01 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:300 calls_made:1 call_cycle:0 2304.8160 -15707.6130 03/01/17 23:38:55 UTC) to sdrifter@soest.hawaii.edu 23:42:20 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:300 calls_made:1 call_cycle:0 23:42:20 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:42:20 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:300 calls_made:1 call_cycle:0 23:42:20 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:42:20 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:300 calls_made:1 call_cycle:0 23:42:20 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:42:20 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:300 calls_made:1 call_cycle:0 23:42:20 01 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:42:20 01 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:42:25 01 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:42:26 01 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:42:26 01 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:42:26 01 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:42:26 01 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:42:26 01 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:42:27 01 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0300lz 23:42:27 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0300lz.1a.x00 23:42:27 01 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0300lz.r in process_file_group 23:42:27 01 Mar 2017 UTC: ERROR: BaseGZip.py(125): ./sg0300lz.r not a gzipped file 23:42:27 01 Mar 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0300lz.r - skipping 23:42:27 01 Mar 2017 UTC: ERROR: Base.py(243): Could not process sg0300lz - skipping 23:42:27 01 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:42:27 01 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0300lz 23:42:27 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0300lz.1a.x00 23:42:27 01 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0300lz.r in process_file_group 23:42:27 01 Mar 2017 UTC: ERROR: BaseGZip.py(125): ./sg0300lz.r not a gzipped file 23:42:27 01 Mar 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0300lz.r - skipping 23:42:27 01 Mar 2017 UTC: ERROR: Base.py(272): Could not process sg0300lz - skipping 23:42:27 01 Mar 2017 UTC: WARNING: Base.py(1624): No dives to process 23:42:27 01 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [] 23:42:27 01 Mar 2017 UTC: INFO: Base.py(1780): No dives found to profile 23:42:27 01 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.300 23:42:27 01 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:42:27 01 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:42:27 01 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:42:27 01 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:42:27 01 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:42:27 01 Mar 2017 UTC: ERROR: Base.py(1960): Dive [300] failed to process completely. The following files were not processed completely: /home/sg626/sg0300lz.r Glider logout not seen - retransmissions from glider possible Consult baselog_170301134218 for details. 23:42:27 01 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:42:27 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:42:27 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:42:27 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:42:27 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:42:27 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:42:27 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:42:27 01 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:42:27 01 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:42:27 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:42:27 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:42:27 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:42:27 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:42:27 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:42:27 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:42:27 01 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:42:27 01 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:42:27 01 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:42:27 01 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:42:27 01 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:42:27 01 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:42:27 01 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:42:27 01 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:42:27 01 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 23:42:27 01 Mar 2017 UTC 23:48:17 01 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 11626 23:48:17 01 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 23:51:12 01 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 11840 23:51:12 01 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:51:12 01 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:51:12 01 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:51:12 01 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:51:12 01 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170301135111 ] 23:51:12 01 Mar 2017 UTC: INFO: Base.py(1333): PID:11847 23:51:12 01 Mar 2017 UTC: INFO: Base.py(1375): Started processing 23:51:12 01 Mar 2017 UTC 23:51:12 01 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:51:13 01 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:51:13 01 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:51:13 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:51:13 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:300 calls_made:4 call_cycle:0 23:51:13 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:51:13 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:300 calls_made:4 call_cycle:0 23:51:13 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:51:13 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:300 calls_made:4 call_cycle:0 23:51:13 01 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:300 calls_made:4 call_cycle:0 2304.8160 -15707.6130 03/01/17 23:38:55 UTC) to sdrifter@soest.hawaii.edu 23:51:13 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:300 calls_made:4 call_cycle:0 23:51:13 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:51:13 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:300 calls_made:4 call_cycle:0 23:51:13 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:51:13 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:300 calls_made:4 call_cycle:0 23:51:13 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:51:13 01 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:300 calls_made:4 call_cycle:0 23:51:13 01 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:51:13 01 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:51:18 01 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:51:19 01 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:51:19 01 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:51:19 01 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:51:19 01 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:51:19 01 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:51:20 01 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0300lz 23:51:20 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0300lz.x00 23:51:20 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0300lz.x01 23:51:20 01 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0300lz.r in process_file_group 23:51:20 01 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260300.log 23:51:20 01 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:51:20 01 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0300dz 23:51:20 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0300dz.x00 23:51:20 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0300dz.x01 23:51:20 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0300dz.x02 23:51:20 01 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0300dz.x03 23:51:20 01 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0300dz.r in process_file_group 23:51:20 01 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [300] 23:51:20 01 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [300] 23:51:21 01 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260300) for profiles 23:51:21 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 23:51:21 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/563) 562 563 to QC_BAD because CT out of water 23:51:21 01 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.115m) 23:51:21 01 Mar 2017 UTC: INFO: QC.py(365): Changed (12/563) 2 184 186 189 190 216 223:225 238 248 250 to QC_PROBABLY_BAD because raw temperature spikes 23:51:21 01 Mar 2017 UTC: INFO: QC.py(408): Changed (11/563) 184 186 189 190 216 221 223 225 238 248 250 to QC_PROBABLY_BAD because raw conductivity spikes 23:51:21 01 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(963): Restarting anomaly after 38.03m: -0.3776 at 254.88m (129) 23:51:21 01 Mar 2017 UTC: INFO: QC.py(180): Changed (12/563) 2 184 186 189 190 216 223:225 238 248 250 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 23:51:21 01 Mar 2017 UTC: INFO: QC.py(180): Changed (1/563) 221 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 23:51:21 01 Mar 2017 UTC: INFO: QC.py(180): Changed (2/563) 562 563 to QC_BAD because changed raw cond implies changed raw salinity 23:51:21 01 Mar 2017 UTC: INFO: QC.py(365): Changed (12/563) 2 184 186 189 190 216 223:225 238 248 250 to QC_INTERPOLATED because temperature spikes 23:51:21 01 Mar 2017 UTC: INFO: QC.py(408): Changed (11/563) 184 186 189 190 216 221 223 225 238 248 250 to QC_INTERPOLATED because conductivity spikes 23:51:21 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/563) 219:224 to QC_BAD because slow apogee CT flow 23:51:21 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/563) 1:6 to QC_BAD because prior to dive start 23:51:21 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/563) 561 to QC_BAD because end of climb 23:51:21 01 Mar 2017 UTC: INFO: QC.py(488): Changed (1/563) 225 to QC_PROBABLY_BAD because bad interpolation anchors 23:51:21 01 Mar 2017 UTC: INFO: QC.py(489): SUGGESTION: 300 bad_conductivity data_points in_between 223 225 % bad interpolation anchors 23:51:21 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/563) 1:6 219:224 561:563 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 23:51:21 01 Mar 2017 UTC: INFO: QC.py(180): Changed (15/563) 1:6 219:224 561:563 to QC_BAD because changed corrected salin implies changed speed 23:51:21 01 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 23:51:21 01 Mar 2017 UTC: INFO: QC.py(180): Changed (9/563) 184 186 189 190 216 225 238 248 250 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 23:51:21 01 Mar 2017 UTC: INFO: QC.py(180): Changed (1/563) 225 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 23:51:21 01 Mar 2017 UTC: INFO: QC.py(180): Changed (9/563) 184 186 189 190 216 225 238 248 250 to QC_INTERPOLATED because changed corrected temp implies changed speed 23:51:21 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.85 cm/s 23:51:21 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.23 cm/s 23:51:21 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 23:51:21 01 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (158/563) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 23:51:21 01 Mar 2017 UTC: INFO: QC.py(180): Changed (3/563) 2 186 216 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 23:51:21 01 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (158/563) 122:125 127:130 132:135 137:140 142:145 147:150 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 23:51:21 01 Mar 2017 UTC: INFO: QC.py(180): Changed (3/563) 2 186 216 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 23:51:21 01 Mar 2017 UTC: INFO: QC.py(180): Changed (15/563) 1:6 219:224 561:563 to QC_BAD because changed salinity implies changed optode oxygen 23:51:21 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 23:51:21 01 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 23:51:21 01 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 23:51:22 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 300: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.66% reduction 23:51:22 01 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.300 23:51:22 01 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:51:22 01 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:51:22 01 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:51:22 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 23:51:22 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 23:53:45 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 23:53:46 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 23:53:46 01 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 23:54:14 01 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:54:14 01 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:54:14 01 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:54:14 01 Mar 2017 UTC /home/sg626/p6260300.log /home/sg626/p6260300.eng /home/sg626/p6260300.asc /home/sg626/p6260300.pro /home/sg626/p6260300.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 23:54:14 01 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:54:14 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:54:14 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:54:14 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:54:14 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:54:14 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:54:14 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:54:14 01 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:54:14 01 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:54:14 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:54:14 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:54:14 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:54:14 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:54:14 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:54:14 01 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:54:14 01 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:54:14 01 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:54:14 01 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:54:14 01 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:54:14 01 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:54:14 01 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:54:14 01 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:54:14 01 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:54:14 01 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 23:54:14 01 Mar 2017 UTC 03:23:21 02 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 17458 03:23:21 02 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:26:17 02 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 17580 03:26:17 02 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:26:17 02 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:26:17 02 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:26:17 02 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:26:17 02 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170301172616 ] 03:26:17 02 Mar 2017 UTC: INFO: Base.py(1333): PID:17587 03:26:17 02 Mar 2017 UTC: INFO: Base.py(1375): Started processing 03:26:17 02 Mar 2017 UTC 03:26:17 02 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:26:18 02 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:26:18 02 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:26:18 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:26:18 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:301 calls_made:1 call_cycle:0 03:26:18 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:26:18 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:301 calls_made:1 call_cycle:0 03:26:18 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:26:18 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:301 calls_made:1 call_cycle:0 03:26:18 02 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:301 calls_made:1 call_cycle:0 2303.4030 -15707.5960 03/02/17 03:21:19 UTC) to sdrifter@soest.hawaii.edu 03:26:18 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:301 calls_made:1 call_cycle:0 03:26:18 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:26:18 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:301 calls_made:1 call_cycle:0 03:26:18 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:26:18 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:301 calls_made:1 call_cycle:0 03:26:18 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:26:18 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:301 calls_made:1 call_cycle:0 03:26:18 02 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:26:18 02 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:26:23 02 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:26:24 02 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:26:24 02 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:26:24 02 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:26:24 02 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:26:24 02 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:26:25 02 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0301lz 03:26:25 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0301lz.x00 03:26:25 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0301lz.x01 03:26:25 02 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0301lz.r in process_file_group 03:26:25 02 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260301.log 03:26:25 02 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:26:25 02 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0301dz 03:26:25 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0301dz.x00 03:26:25 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0301dz.x01 03:26:25 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0301dz.x02 03:26:25 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0301dz.x03 03:26:25 02 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0301dz.r in process_file_group 03:26:26 02 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [301] 03:26:26 02 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [301] 03:26:26 02 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260301) for profiles 03:26:26 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 03:26:26 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/612) 612 to QC_BAD because CT out of water 03:26:26 02 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.129m) 03:26:26 02 Mar 2017 UTC: INFO: QC.py(365): Changed (12/612) 2 206 213 214 221 230 245 260 288 289 298 417 to QC_PROBABLY_BAD because raw temperature spikes 03:26:26 02 Mar 2017 UTC: INFO: QC.py(408): Changed (11/612) 116 213 214 221 230 245 270 271 281 298 417 to QC_PROBABLY_BAD because raw conductivity spikes 03:26:26 02 Mar 2017 UTC: INFO: QC.py(180): Changed (12/612) 2 206 213 214 221 230 245 260 288 289 298 417 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 03:26:26 02 Mar 2017 UTC: INFO: QC.py(180): Changed (4/612) 116 270 271 281 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 03:26:26 02 Mar 2017 UTC: INFO: QC.py(180): Changed (1/612) 612 to QC_BAD because changed raw cond implies changed raw salinity 03:26:26 02 Mar 2017 UTC: INFO: QC.py(365): Changed (12/612) 2 206 213 214 221 230 245 260 288 289 298 417 to QC_INTERPOLATED because temperature spikes 03:26:26 02 Mar 2017 UTC: INFO: QC.py(408): Changed (11/612) 116 213 214 221 230 245 270 271 281 298 417 to QC_INTERPOLATED because conductivity spikes 03:26:26 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/612) 258:262 to QC_BAD because slow apogee CT flow 03:26:26 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/612) 1:7 to QC_BAD because prior to dive start 03:26:26 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/612) 1:7 258:262 612 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:26:26 02 Mar 2017 UTC: INFO: QC.py(180): Changed (13/612) 1:7 258:262 612 to QC_BAD because changed corrected salin implies changed speed 03:26:27 02 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 03:26:27 02 Mar 2017 UTC: INFO: QC.py(180): Changed (10/612) 206 213 214 221 230 245 288 289 298 417 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 03:26:27 02 Mar 2017 UTC: INFO: QC.py(180): Changed (4/612) 116 270 271 281 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 03:26:27 02 Mar 2017 UTC: INFO: QC.py(180): Changed (10/612) 206 213 214 221 230 245 288 289 298 417 to QC_INTERPOLATED because changed corrected temp implies changed speed 03:26:27 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.27 cm/s 03:26:27 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.49 cm/s 03:26:27 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:26:27 02 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (189/612) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:26:27 02 Mar 2017 UTC: INFO: QC.py(180): Changed (4/612) 2 206 221 417 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:26:27 02 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (189/612) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 03:26:27 02 Mar 2017 UTC: INFO: QC.py(180): Changed (4/612) 2 206 221 417 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 03:26:27 02 Mar 2017 UTC: INFO: QC.py(180): Changed (13/612) 1:7 258:262 612 to QC_BAD because changed salinity implies changed optode oxygen 03:26:27 02 Mar 2017 UTC: INFO: QC.py(180): Changed (3/612) 116 271 281 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 03:26:27 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:26:27 02 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:26:27 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 03:26:27 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 301: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.12% reduction 03:26:27 02 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.301 03:26:27 02 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:26:27 02 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:26:27 02 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:26:27 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 03:26:27 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 03:28:53 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 03:28:54 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 03:28:54 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 03:29:21 02 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:29:21 02 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:29:21 02 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:29:21 02 Mar 2017 UTC /home/sg626/p6260301.log /home/sg626/p6260301.eng /home/sg626/p6260301.asc /home/sg626/p6260301.pro /home/sg626/p6260301.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 03:29:21 02 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:29:21 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:29:21 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:29:21 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:29:21 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:29:21 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:29:21 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:29:21 02 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:29:21 02 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:29:21 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:29:21 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:29:21 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:29:21 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:29:21 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:29:21 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:29:21 02 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:29:21 02 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:29:21 02 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:29:21 02 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:29:21 02 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:29:21 02 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:29:21 02 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:29:21 02 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:29:21 02 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 03:29:21 02 Mar 2017 UTC 07:05:09 02 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 24202 07:05:09 02 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:08:20 02 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 24337 07:08:20 02 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:08:20 02 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:08:20 02 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:08:20 02 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:08:20 02 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170301210820 ] 07:08:20 02 Mar 2017 UTC: INFO: Base.py(1333): PID:24345 07:08:20 02 Mar 2017 UTC: INFO: Base.py(1375): Started processing 07:08:20 02 Mar 2017 UTC 07:08:20 02 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:08:21 02 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:08:21 02 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:08:21 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:08:21 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:302 calls_made:1 call_cycle:0 07:08:21 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:08:21 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:302 calls_made:1 call_cycle:0 07:08:21 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:08:21 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:302 calls_made:1 call_cycle:0 07:08:21 02 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:302 calls_made:1 call_cycle:0 2301.3080 -15708.6850 03/02/17 07:03:00 UTC) to sdrifter@soest.hawaii.edu 07:08:21 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:302 calls_made:1 call_cycle:0 07:08:21 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:08:21 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:302 calls_made:1 call_cycle:0 07:08:21 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:08:21 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:302 calls_made:1 call_cycle:0 07:08:21 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:08:21 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:302 calls_made:1 call_cycle:0 07:08:21 02 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:08:21 02 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:08:26 02 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:08:27 02 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:08:27 02 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:08:27 02 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:08:27 02 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:08:27 02 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:08:28 02 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0302lz 07:08:28 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0302lz.x00 07:08:28 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0302lz.x01 07:08:28 02 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0302lz.r in process_file_group 07:08:28 02 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260302.log 07:08:28 02 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:08:28 02 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0302dz 07:08:28 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0302dz.x00 07:08:28 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0302dz.x01 07:08:28 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0302dz.x02 07:08:28 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0302dz.x03 07:08:28 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0302dz.x04 07:08:28 02 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0302dz.r in process_file_group 07:08:29 02 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [302] 07:08:29 02 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [302] 07:08:29 02 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260302) for profiles 07:08:29 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 07:08:29 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/682) 681 to QC_BAD because CT out of water 07:08:29 02 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.033m) 07:08:29 02 Mar 2017 UTC: INFO: QC.py(365): Changed (13/682) 222 223 234 235 241 254 263 267 286 295 299 300 ... to QC_PROBABLY_BAD because raw temperature spikes 07:08:29 02 Mar 2017 UTC: INFO: QC.py(408): Changed (11/682) 222 223 235 254 263 270 295 299 300 304 423 to QC_PROBABLY_BAD because raw conductivity spikes 07:08:29 02 Mar 2017 UTC: INFO: QC.py(180): Changed (13/682) 222 223 234 235 241 254 263 267 286 295 299 300 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:08:29 02 Mar 2017 UTC: INFO: QC.py(180): Changed (2/682) 270 423 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 07:08:29 02 Mar 2017 UTC: INFO: QC.py(180): Changed (1/682) 681 to QC_BAD because changed raw cond implies changed raw salinity 07:08:29 02 Mar 2017 UTC: INFO: QC.py(365): Changed (13/682) 222 223 234 235 241 254 263 267 286 295 299 300 ... to QC_INTERPOLATED because temperature spikes 07:08:29 02 Mar 2017 UTC: INFO: QC.py(408): Changed (11/682) 222 223 235 254 263 270 295 299 300 304 423 to QC_INTERPOLATED because conductivity spikes 07:08:29 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/682) 265:270 to QC_BAD because slow apogee CT flow 07:08:29 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/682) 1:6 to QC_BAD because prior to dive start 07:08:29 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/682) 682 to QC_BAD because end of climb 07:08:29 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/682) 1:6 265:270 681 682 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:08:29 02 Mar 2017 UTC: INFO: QC.py(180): Changed (14/682) 1:6 265:270 681 682 to QC_BAD because changed corrected salin implies changed speed 07:08:30 02 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:08:30 02 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 302 interp_salinity data_points in_between 325 390 % suspect thermal-inertia points 364 07:08:30 02 Mar 2017 UTC: INFO: QC.py(180): Changed (12/682) 222 223 234 235 241 254 263 286 295 299 300 304 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 07:08:30 02 Mar 2017 UTC: INFO: QC.py(180): Changed (1/682) 423 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 07:08:30 02 Mar 2017 UTC: INFO: QC.py(180): Changed (12/682) 222 223 234 235 241 254 263 286 295 299 300 304 to QC_INTERPOLATED because changed corrected temp implies changed speed 07:08:30 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.38 cm/s 07:08:30 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.54 cm/s 07:08:30 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:08:30 02 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (188/682) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:08:30 02 Mar 2017 UTC: INFO: QC.py(180): Changed (2/682) 241 286 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:08:30 02 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (188/682) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 07:08:30 02 Mar 2017 UTC: INFO: QC.py(180): Changed (2/682) 241 286 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:08:30 02 Mar 2017 UTC: INFO: QC.py(180): Changed (14/682) 1:6 265:270 681 682 to QC_BAD because changed salinity implies changed optode oxygen 07:08:30 02 Mar 2017 UTC: INFO: QC.py(180): Changed (1/682) 423 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 07:08:30 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:08:30 02 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:08:30 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 07:08:30 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 302: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.05% reduction 07:08:30 02 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.302 07:08:30 02 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:08:30 02 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:08:30 02 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:08:31 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 07:08:31 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:10:54 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 07:10:55 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:10:55 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:11:23 02 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:11:23 02 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:11:23 02 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:11:23 02 Mar 2017 UTC /home/sg626/p6260302.log /home/sg626/p6260302.eng /home/sg626/p6260302.asc /home/sg626/p6260302.pro /home/sg626/p6260302.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:11:23 02 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:11:23 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:11:23 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:11:23 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:11:23 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:11:23 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:11:23 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:11:23 02 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:11:23 02 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:11:23 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:11:23 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:11:23 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:11:23 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:11:23 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:11:23 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:11:23 02 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:11:23 02 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:11:23 02 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:11:23 02 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:11:23 02 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:11:23 02 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:11:23 02 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:11:23 02 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:11:23 02 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 07:11:23 02 Mar 2017 UTC 10:41:07 02 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 30429 10:41:07 02 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:44:05 02 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 30559 10:44:05 02 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:44:05 02 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:44:05 02 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:44:05 02 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:44:05 02 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170302004404 ] 10:44:05 02 Mar 2017 UTC: INFO: Base.py(1333): PID:30566 10:44:05 02 Mar 2017 UTC: INFO: Base.py(1375): Started processing 10:44:05 02 Mar 2017 UTC 10:44:05 02 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:44:06 02 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:44:06 02 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:44:06 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:44:06 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:303 calls_made:1 call_cycle:0 10:44:06 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:44:06 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:303 calls_made:1 call_cycle:0 10:44:06 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:44:06 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:303 calls_made:1 call_cycle:0 10:44:06 02 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:303 calls_made:1 call_cycle:0 2300.1410 -15710.1320 03/02/17 10:38:51 UTC) to sdrifter@soest.hawaii.edu 10:44:11 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:303 calls_made:1 call_cycle:0 10:44:11 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:44:11 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:303 calls_made:1 call_cycle:0 10:44:11 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:44:11 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:303 calls_made:1 call_cycle:0 10:44:11 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:44:11 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:303 calls_made:1 call_cycle:0 10:44:11 02 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:44:11 02 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:44:16 02 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:44:17 02 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:44:17 02 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:44:17 02 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:44:17 02 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:44:17 02 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:44:18 02 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0303lz 10:44:18 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0303lz.x00 10:44:18 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0303lz.x01 10:44:18 02 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0303lz.r in process_file_group 10:44:18 02 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260303.log 10:44:18 02 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:44:18 02 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0303dz 10:44:18 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0303dz.x00 10:44:18 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0303dz.x01 10:44:18 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0303dz.x02 10:44:18 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0303dz.x03 10:44:18 02 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0303dz.r in process_file_group 10:44:19 02 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [303] 10:44:19 02 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [303] 10:44:19 02 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260303) for profiles 10:44:19 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 10:44:19 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/651) 650 to QC_BAD because CT out of water 10:44:19 02 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.061m) 10:44:19 02 Mar 2017 UTC: INFO: QC.py(365): Changed (10/651) 215 220 226 233 242 249 254 262 282 286 to QC_PROBABLY_BAD because raw temperature spikes 10:44:19 02 Mar 2017 UTC: INFO: QC.py(408): Changed (11/651) 121 220 231 233 240 242 248 254 262 282 286 to QC_PROBABLY_BAD because raw conductivity spikes 10:44:19 02 Mar 2017 UTC: INFO: QC.py(180): Changed (10/651) 215 220 226 233 242 249 254 262 282 286 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 10:44:19 02 Mar 2017 UTC: INFO: QC.py(180): Changed (4/651) 121 231 240 248 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 10:44:19 02 Mar 2017 UTC: INFO: QC.py(180): Changed (1/651) 650 to QC_BAD because changed raw cond implies changed raw salinity 10:44:19 02 Mar 2017 UTC: INFO: QC.py(365): Changed (10/651) 215 220 226 233 242 249 254 262 282 286 to QC_INTERPOLATED because temperature spikes 10:44:19 02 Mar 2017 UTC: INFO: QC.py(408): Changed (11/651) 121 220 231 233 240 242 248 254 262 282 286 to QC_INTERPOLATED because conductivity spikes 10:44:19 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/651) 247:252 to QC_BAD because slow apogee CT flow 10:44:19 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/651) 1:6 to QC_BAD because prior to dive start 10:44:19 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/651) 649 651 to QC_BAD because end of climb 10:44:19 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/651) 1:6 247:252 649:651 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:44:19 02 Mar 2017 UTC: INFO: QC.py(180): Changed (15/651) 1:6 247:252 649:651 to QC_BAD because changed corrected salin implies changed speed 10:44:20 02 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 10:44:20 02 Mar 2017 UTC: INFO: QC.py(180): Changed (9/651) 215 220 226 233 242 254 262 282 286 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 10:44:20 02 Mar 2017 UTC: INFO: QC.py(180): Changed (3/651) 121 231 240 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 10:44:20 02 Mar 2017 UTC: INFO: QC.py(180): Changed (9/651) 215 220 226 233 242 254 262 282 286 to QC_INTERPOLATED because changed corrected temp implies changed speed 10:44:20 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.79 cm/s 10:44:20 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.70 cm/s 10:44:20 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:44:20 02 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (184/651) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:44:20 02 Mar 2017 UTC: INFO: QC.py(180): Changed (2/651) 226 286 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 10:44:20 02 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (184/651) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 10:44:20 02 Mar 2017 UTC: INFO: QC.py(180): Changed (2/651) 226 286 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 10:44:20 02 Mar 2017 UTC: INFO: QC.py(180): Changed (15/651) 1:6 247:252 649:651 to QC_BAD because changed salinity implies changed optode oxygen 10:44:20 02 Mar 2017 UTC: INFO: QC.py(180): Changed (2/651) 121 231 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 10:44:20 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:44:20 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 10:44:20 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 303: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.30% reduction 10:44:20 02 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.303 10:44:20 02 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:44:20 02 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:44:20 02 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:44:20 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 10:44:20 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 10:46:44 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 10:46:45 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 10:46:45 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 10:47:13 02 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:47:13 02 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:47:13 02 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 10:47:13 02 Mar 2017 UTC /home/sg626/p6260303.log /home/sg626/p6260303.eng /home/sg626/p6260303.asc /home/sg626/p6260303.pro /home/sg626/p6260303.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 10:47:13 02 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:47:13 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:47:13 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:47:13 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:47:13 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:47:13 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:47:13 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:47:13 02 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:47:13 02 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:47:13 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:47:13 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:47:13 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:47:13 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:47:13 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:47:13 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:47:13 02 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:47:13 02 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:47:13 02 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:47:13 02 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:47:13 02 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:47:13 02 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:47:13 02 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:47:13 02 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:47:13 02 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 10:47:13 02 Mar 2017 UTC 14:23:29 02 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 4054 14:23:30 02 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:26:48 02 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 4178 14:26:48 02 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:26:48 02 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 14:26:48 02 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 14:26:48 02 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:26:48 02 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170302042648 ] 14:26:48 02 Mar 2017 UTC: INFO: Base.py(1333): PID:4186 14:26:49 02 Mar 2017 UTC: INFO: Base.py(1375): Started processing 14:26:49 02 Mar 2017 UTC 14:26:49 02 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 14:26:49 02 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 14:26:49 02 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:26:49 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:26:49 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:304 calls_made:1 call_cycle:0 14:26:49 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:26:49 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:304 calls_made:1 call_cycle:0 14:26:49 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:26:49 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:304 calls_made:1 call_cycle:0 14:26:49 02 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:304 calls_made:1 call_cycle:0 2258.7440 -15711.0840 03/02/17 14:21:18 UTC) to sdrifter@soest.hawaii.edu 14:26:50 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:304 calls_made:1 call_cycle:0 14:26:50 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:26:50 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:304 calls_made:1 call_cycle:0 14:26:50 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:26:50 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:304 calls_made:1 call_cycle:0 14:26:50 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:26:50 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:304 calls_made:1 call_cycle:0 14:26:50 02 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:26:50 02 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:26:55 02 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:26:55 02 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:26:55 02 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 14:26:55 02 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:26:55 02 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:26:55 02 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 14:26:57 02 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0304lz 14:26:57 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0304lz.x00 14:26:57 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0304lz.x01 14:26:57 02 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0304lz.r in process_file_group 14:26:57 02 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260304.log 14:26:57 02 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 14:26:57 02 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0304dz 14:26:57 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0304dz.x00 14:26:57 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0304dz.x01 14:26:57 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0304dz.x02 14:26:57 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0304dz.x03 14:26:57 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0304dz.x04 14:26:57 02 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0304dz.r in process_file_group 14:26:57 02 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [304] 14:26:57 02 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [304] 14:26:57 02 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260304) for profiles 14:26:57 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 14:26:57 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (4/674) 671:674 to QC_BAD because CT out of water 14:26:57 02 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.098m) 14:26:57 02 Mar 2017 UTC: INFO: QC.py(365): Changed (15/674) 3 206 210 227 230 235:237 249 254 258 259 284 285 ... to QC_PROBABLY_BAD because raw temperature spikes 14:26:57 02 Mar 2017 UTC: INFO: QC.py(377): Changed (2/674) 672 673 to QC_BAD because raw salinity below bound 14:26:58 02 Mar 2017 UTC: INFO: QC.py(408): Changed (9/674) 206 210 235 236 249 257:259 285 to QC_PROBABLY_BAD because raw conductivity spikes 14:26:58 02 Mar 2017 UTC: INFO: QC.py(180): Changed (14/674) 3 206 210 227 230 235:237 249 254 258 259 284 285 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:26:58 02 Mar 2017 UTC: INFO: QC.py(180): Changed (1/674) 257 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 14:26:58 02 Mar 2017 UTC: INFO: QC.py(180): Changed (2/674) 671 674 to QC_BAD because changed raw cond implies changed raw salinity 14:26:58 02 Mar 2017 UTC: INFO: QC.py(365): Changed (15/674) 3 206 210 227 230 235:237 249 254 258 259 284 285 ... to QC_INTERPOLATED because temperature spikes 14:26:58 02 Mar 2017 UTC: INFO: QC.py(377): Changed (2/674) 672 673 to QC_BAD because salinity below bound 14:26:58 02 Mar 2017 UTC: INFO: QC.py(408): Changed (9/674) 206 210 235 236 249 257:259 285 to QC_INTERPOLATED because conductivity spikes 14:26:58 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/674) 252:257 to QC_BAD because slow apogee CT flow 14:26:58 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/674) 1:6 to QC_BAD because prior to dive start 14:26:58 02 Mar 2017 UTC: INFO: QC.py(488): Changed (2/674) 258 259 to QC_PROBABLY_BAD because bad interpolation anchors 14:26:58 02 Mar 2017 UTC: INFO: QC.py(489): SUGGESTION: 304 bad_conductivity data_points in_between 256 259 % bad interpolation anchors 14:26:58 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/674) 1:6 252:257 671:674 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:26:58 02 Mar 2017 UTC: INFO: QC.py(180): Changed (16/674) 1:6 252:257 671:674 to QC_BAD because changed corrected salin implies changed speed 14:26:58 02 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:26:58 02 Mar 2017 UTC: INFO: QC.py(180): Changed (12/674) 206 210 227 230 235:237 249 258 259 284 285 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 14:26:58 02 Mar 2017 UTC: INFO: QC.py(180): Changed (2/674) 258 259 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 14:26:58 02 Mar 2017 UTC: INFO: QC.py(180): Changed (12/674) 206 210 227 230 235:237 249 258 259 284 285 to QC_INTERPOLATED because changed corrected temp implies changed speed 14:26:58 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.19 cm/s 14:26:58 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.48 cm/s 14:26:58 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:26:58 02 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (189/674) 139 140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:26:58 02 Mar 2017 UTC: INFO: QC.py(180): Changed (4/674) 3 206 236 673 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 14:26:58 02 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (189/674) 139 140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 14:26:58 02 Mar 2017 UTC: INFO: QC.py(180): Changed (4/674) 3 206 236 673 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 14:26:58 02 Mar 2017 UTC: INFO: QC.py(180): Changed (16/674) 1:6 252:257 671:674 to QC_BAD because changed salinity implies changed optode oxygen 14:26:58 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:26:58 02 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:26:58 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 14:26:59 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 304: Data set size for profile, binned and kkyy files reduced by 16 points, a 2.37% reduction 14:26:59 02 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.304 14:26:59 02 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:26:59 02 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:26:59 02 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:26:59 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 14:26:59 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 14:29:23 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 14:29:24 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 14:29:24 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 14:29:52 02 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:29:52 02 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:29:52 02 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:29:52 02 Mar 2017 UTC /home/sg626/p6260304.log /home/sg626/p6260304.eng /home/sg626/p6260304.asc /home/sg626/p6260304.pro /home/sg626/p6260304.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 14:29:52 02 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:29:52 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:29:52 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:29:52 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:29:52 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:29:52 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:29:52 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:29:52 02 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:29:52 02 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:29:52 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:29:52 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:29:52 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:29:52 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:29:52 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:29:52 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:29:52 02 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:29:52 02 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:29:52 02 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:29:52 02 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:29:52 02 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:29:52 02 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:29:52 02 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:29:52 02 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:29:52 02 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 14:29:52 02 Mar 2017 UTC 18:03:37 02 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 11384 18:03:37 02 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 18:06:37 02 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 11569 18:06:37 02 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:06:37 02 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 18:06:37 02 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 18:06:37 02 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:06:37 02 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170302080637 ] 18:06:37 02 Mar 2017 UTC: INFO: Base.py(1333): PID:11576 18:06:37 02 Mar 2017 UTC: INFO: Base.py(1375): Started processing 18:06:37 02 Mar 2017 UTC 18:06:37 02 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 18:06:38 02 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 18:06:38 02 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:06:38 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:06:38 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:305 calls_made:1 call_cycle:0 18:06:38 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:06:38 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:305 calls_made:1 call_cycle:0 18:06:38 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:06:38 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:305 calls_made:1 call_cycle:0 18:06:38 02 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:305 calls_made:1 call_cycle:0 2256.9850 -15712.4960 03/02/17 18:01:31 UTC) to sdrifter@soest.hawaii.edu 18:06:38 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:305 calls_made:1 call_cycle:0 18:06:38 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:06:38 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:305 calls_made:1 call_cycle:0 18:06:38 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:06:38 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:305 calls_made:1 call_cycle:0 18:06:38 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:06:38 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:305 calls_made:1 call_cycle:0 18:06:38 02 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:06:38 02 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:06:43 02 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:06:44 02 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:06:44 02 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 18:06:44 02 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:06:44 02 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:06:44 02 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 18:06:46 02 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0305lz 18:06:46 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0305lz.x00 18:06:46 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0305lz.x01 18:06:46 02 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0305lz.r in process_file_group 18:06:46 02 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260305.log 18:06:46 02 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 18:06:46 02 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0305dz 18:06:46 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0305dz.x00 18:06:46 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0305dz.x01 18:06:46 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0305dz.x02 18:06:46 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0305dz.x03 18:06:46 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0305dz.x04 18:06:46 02 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0305dz.r in process_file_group 18:06:46 02 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [305] 18:06:46 02 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [305] 18:06:46 02 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260305) for profiles 18:06:46 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 18:06:46 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/672) 671 672 to QC_BAD because CT out of water 18:06:46 02 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.098m) 18:06:46 02 Mar 2017 UTC: INFO: QC.py(365): Changed (10/672) 2 3 5 205 235 238 246 259 304 396 to QC_PROBABLY_BAD because raw temperature spikes 18:06:46 02 Mar 2017 UTC: INFO: QC.py(408): Changed (5/672) 205 209 238 246 396 to QC_PROBABLY_BAD because raw conductivity spikes 18:06:46 02 Mar 2017 UTC: INFO: QC.py(180): Changed (10/672) 2 3 5 205 235 238 246 259 304 396 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 18:06:46 02 Mar 2017 UTC: INFO: QC.py(180): Changed (1/672) 209 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 18:06:46 02 Mar 2017 UTC: INFO: QC.py(180): Changed (2/672) 671 672 to QC_BAD because changed raw cond implies changed raw salinity 18:06:46 02 Mar 2017 UTC: INFO: QC.py(365): Changed (10/672) 2 3 5 205 235 238 246 259 304 396 to QC_INTERPOLATED because temperature spikes 18:06:46 02 Mar 2017 UTC: INFO: QC.py(408): Changed (5/672) 205 209 238 246 396 to QC_INTERPOLATED because conductivity spikes 18:06:46 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/672) 257:262 to QC_BAD because slow apogee CT flow 18:06:46 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/672) 1:6 to QC_BAD because prior to dive start 18:06:46 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/672) 670 to QC_BAD because end of climb 18:06:47 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/672) 1:6 257:262 670:672 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 18:06:47 02 Mar 2017 UTC: INFO: QC.py(180): Changed (15/672) 1:6 257:262 670:672 to QC_BAD because changed corrected salin implies changed speed 18:06:47 02 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 18:06:47 02 Mar 2017 UTC: INFO: QC.py(180): Changed (6/672) 205 235 238 246 304 396 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 18:06:47 02 Mar 2017 UTC: INFO: QC.py(180): Changed (1/672) 209 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 18:06:47 02 Mar 2017 UTC: INFO: QC.py(180): Changed (6/672) 205 235 238 246 304 396 to QC_INTERPOLATED because changed corrected temp implies changed speed 18:06:47 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.63 cm/s 18:06:47 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.73 cm/s 18:06:47 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 18:06:47 02 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (188/672) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 18:06:47 02 Mar 2017 UTC: INFO: QC.py(180): Changed (5/672) 2 3 5 246 396 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 18:06:47 02 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (188/672) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 18:06:47 02 Mar 2017 UTC: INFO: QC.py(180): Changed (5/672) 2 3 5 246 396 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 18:06:47 02 Mar 2017 UTC: INFO: QC.py(180): Changed (15/672) 1:6 257:262 670:672 to QC_BAD because changed salinity implies changed optode oxygen 18:06:47 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 18:06:47 02 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 18:06:47 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 18:06:48 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 305: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.23% reduction 18:06:48 02 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.305 18:06:48 02 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:06:48 02 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:06:48 02 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:06:48 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 18:06:48 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 18:09:15 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 18:09:16 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 18:09:16 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 18:09:44 02 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:09:44 02 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:09:44 02 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:09:44 02 Mar 2017 UTC /home/sg626/p6260305.log /home/sg626/p6260305.eng /home/sg626/p6260305.asc /home/sg626/p6260305.pro /home/sg626/p6260305.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 18:09:44 02 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:09:44 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:09:44 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:09:44 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:09:44 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:09:44 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:09:44 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:09:44 02 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:09:44 02 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:09:44 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:09:44 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:09:44 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:09:44 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:09:44 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:09:44 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:09:44 02 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:09:44 02 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 18:09:44 02 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 18:09:44 02 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 18:09:44 02 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 18:09:44 02 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:09:44 02 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:09:44 02 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:09:44 02 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 18:09:44 02 Mar 2017 UTC 21:41:49 02 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 21259 21:41:49 02 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:44:56 02 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 21441 21:44:56 02 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:44:56 02 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:44:56 02 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:44:56 02 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:44:56 02 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170302114455 ] 21:44:56 02 Mar 2017 UTC: INFO: Base.py(1333): PID:21449 21:44:56 02 Mar 2017 UTC: INFO: Base.py(1375): Started processing 21:44:56 02 Mar 2017 UTC 21:44:56 02 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:44:57 02 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:44:57 02 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:44:57 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:44:57 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:306 calls_made:1 call_cycle:0 21:44:57 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:44:57 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:306 calls_made:1 call_cycle:0 21:44:57 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:44:57 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:306 calls_made:1 call_cycle:0 21:44:57 02 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:306 calls_made:1 call_cycle:0 2256.1770 -15714.2710 03/02/17 21:39:37 UTC) to sdrifter@soest.hawaii.edu 21:44:57 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:306 calls_made:1 call_cycle:0 21:44:57 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:44:57 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:306 calls_made:1 call_cycle:0 21:44:57 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:44:57 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:306 calls_made:1 call_cycle:0 21:44:57 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:44:57 02 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:306 calls_made:1 call_cycle:0 21:44:57 02 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:44:57 02 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:45:02 02 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:45:02 02 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:45:02 02 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:45:02 02 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:45:02 02 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:45:02 02 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:45:04 02 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0306lz 21:45:04 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0306lz.x00 21:45:04 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0306lz.x01 21:45:04 02 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0306lz.r in process_file_group 21:45:04 02 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260306.log 21:45:04 02 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:45:04 02 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0306dz 21:45:04 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0306dz.x00 21:45:04 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0306dz.x01 21:45:04 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0306dz.x02 21:45:04 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0306dz.x03 21:45:04 02 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0306dz.x04 21:45:04 02 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0306dz.r in process_file_group 21:45:04 02 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [306] 21:45:04 02 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [306] 21:45:04 02 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260306) for profiles 21:45:04 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:45:05 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/665) 664 665 to QC_BAD because CT out of water 21:45:05 02 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.111m) 21:45:05 02 Mar 2017 UTC: INFO: QC.py(365): Changed (12/665) 2 207 208 213 219 220 223 247 256 257 264 270 to QC_PROBABLY_BAD because raw temperature spikes 21:45:05 02 Mar 2017 UTC: INFO: QC.py(377): Changed (2/665) 664 665 to QC_BAD because raw salinity below bound 21:45:05 02 Mar 2017 UTC: INFO: QC.py(408): Changed (12/665) 207 208 210 213 219 220 223 247 256 257 264 270 to QC_PROBABLY_BAD because raw conductivity spikes 21:45:05 02 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <140 pt uncorrectable 622.0m SUSPECT weak conductivity anomaly n:-0.27 p:0.27> 21:45:05 02 Mar 2017 UTC: INFO: QC.py(180): Changed (12/665) 2 207 208 213 219 220 223 247 256 257 264 270 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:45:05 02 Mar 2017 UTC: INFO: QC.py(180): Changed (1/665) 210 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 21:45:05 02 Mar 2017 UTC: INFO: QC.py(365): Changed (12/665) 2 207 208 213 219 220 223 247 256 257 264 270 to QC_INTERPOLATED because temperature spikes 21:45:05 02 Mar 2017 UTC: INFO: QC.py(377): Changed (2/665) 664 665 to QC_BAD because salinity below bound 21:45:05 02 Mar 2017 UTC: INFO: QC.py(408): Changed (12/665) 207 208 210 213 219 220 223 247 256 257 264 270 to QC_INTERPOLATED because conductivity spikes 21:45:05 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/665) 240:245 to QC_BAD because slow apogee CT flow 21:45:05 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/665) 1:6 to QC_BAD because prior to dive start 21:45:05 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/665) 663 to QC_BAD because end of climb 21:45:05 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/665) 1:6 240:245 663:665 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:45:05 02 Mar 2017 UTC: INFO: QC.py(180): Changed (15/665) 1:6 240:245 663:665 to QC_BAD because changed corrected salin implies changed speed 21:45:05 02 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:45:05 02 Mar 2017 UTC: INFO: QC.py(180): Changed (11/665) 207 208 213 219 220 223 247 256 257 264 270 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 21:45:05 02 Mar 2017 UTC: INFO: QC.py(180): Changed (1/665) 210 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 21:45:05 02 Mar 2017 UTC: INFO: QC.py(180): Changed (11/665) 207 208 213 219 220 223 247 256 257 264 270 to QC_INTERPOLATED because changed corrected temp implies changed speed 21:45:05 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.62 cm/s 21:45:05 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.90 cm/s 21:45:05 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:45:05 02 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (185/665) 128:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:45:05 02 Mar 2017 UTC: INFO: QC.py(180): Changed (2/665) 2 256 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:45:05 02 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (185/665) 128:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:45:05 02 Mar 2017 UTC: INFO: QC.py(180): Changed (2/665) 2 256 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:45:05 02 Mar 2017 UTC: INFO: QC.py(180): Changed (15/665) 1:6 240:245 663:665 to QC_BAD because changed salinity implies changed optode oxygen 21:45:05 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:45:05 02 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:45:05 02 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:45:06 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 306: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.26% reduction 21:45:06 02 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.306 21:45:06 02 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:45:06 02 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:45:06 02 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:45:06 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:45:06 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 21:47:33 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 21:47:34 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 21:47:34 02 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 21:48:02 02 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:48:02 02 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:48:02 02 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:48:02 02 Mar 2017 UTC /home/sg626/p6260306.log /home/sg626/p6260306.eng /home/sg626/p6260306.asc /home/sg626/p6260306.pro /home/sg626/p6260306.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 21:48:02 02 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:48:02 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:48:02 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:48:02 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:48:02 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:48:02 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:48:02 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:48:02 02 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:48:02 02 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:48:02 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:48:02 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:48:02 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:48:02 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:48:02 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:48:02 02 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:48:02 02 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:48:02 02 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:48:02 02 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:48:02 02 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:48:02 02 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:48:02 02 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:48:02 02 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:48:02 02 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:48:02 02 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 21:48:02 02 Mar 2017 UTC 01:18:05 03 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 31049 01:18:05 03 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:20:51 03 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 31306 01:20:51 03 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:20:51 03 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:20:51 03 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:20:51 03 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:20:51 03 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170302152050 ] 01:20:51 03 Mar 2017 UTC: INFO: Base.py(1333): PID:31313 01:20:51 03 Mar 2017 UTC: INFO: Base.py(1375): Started processing 01:20:51 03 Mar 2017 UTC 01:20:51 03 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:20:52 03 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:20:52 03 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:20:52 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:20:52 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:307 calls_made:1 call_cycle:0 01:20:52 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:20:52 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:307 calls_made:1 call_cycle:0 01:20:52 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:20:52 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:307 calls_made:1 call_cycle:0 01:20:52 03 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:307 calls_made:1 call_cycle:0 2255.2970 -15715.3430 03/03/17 01:16:00 UTC) to sdrifter@soest.hawaii.edu 01:20:52 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:307 calls_made:1 call_cycle:0 01:20:52 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:20:52 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:307 calls_made:1 call_cycle:0 01:20:52 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:20:52 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:307 calls_made:1 call_cycle:0 01:20:52 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:20:52 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:307 calls_made:1 call_cycle:0 01:20:52 03 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:20:52 03 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:20:57 03 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:20:57 03 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:20:57 03 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:20:57 03 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:20:57 03 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:20:57 03 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:20:59 03 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0307lz 01:20:59 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0307lz.x00 01:20:59 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0307lz.x01 01:20:59 03 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0307lz.r in process_file_group 01:20:59 03 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260307.log 01:20:59 03 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:20:59 03 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0307dz 01:20:59 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0307dz.x00 01:20:59 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0307dz.x01 01:20:59 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0307dz.x02 01:20:59 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0307dz.x03 01:20:59 03 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0307dz.r in process_file_group 01:20:59 03 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [307] 01:20:59 03 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [307] 01:21:00 03 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260307) for profiles 01:21:00 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:21:00 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/635) 633:635 to QC_BAD because CT out of water 01:21:00 03 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.060m) 01:21:00 03 Mar 2017 UTC: INFO: QC.py(365): Changed (19/635) 203 205 207 210:213 215 219 220 226 231 238 253 ... to QC_PROBABLY_BAD because raw temperature spikes 01:21:00 03 Mar 2017 UTC: INFO: QC.py(377): Changed (2/635) 634 635 to QC_BAD because raw salinity below bound 01:21:00 03 Mar 2017 UTC: INFO: QC.py(408): Changed (17/635) 203 205 207 210:213 215 219 220 226 231 253 266 ... to QC_PROBABLY_BAD because raw conductivity spikes 01:21:00 03 Mar 2017 UTC: INFO: QC.py(180): Changed (18/635) 203 205 207 210:213 215 219 220 226 231 238 253 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:21:00 03 Mar 2017 UTC: INFO: QC.py(180): Changed (1/635) 633 to QC_BAD because changed raw cond implies changed raw salinity 01:21:00 03 Mar 2017 UTC: INFO: QC.py(365): Changed (19/635) 203 205 207 210:213 215 219 220 226 231 238 253 ... to QC_INTERPOLATED because temperature spikes 01:21:00 03 Mar 2017 UTC: INFO: QC.py(377): Changed (2/635) 634 635 to QC_BAD because salinity below bound 01:21:00 03 Mar 2017 UTC: INFO: QC.py(408): Changed (17/635) 203 205 207 210:213 215 219 220 226 231 253 266 ... to QC_INTERPOLATED because conductivity spikes 01:21:00 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/635) 245:250 to QC_BAD because slow apogee CT flow 01:21:00 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/635) 1:6 to QC_BAD because prior to dive start 01:21:00 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/635) 1:6 245:250 633:635 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:21:00 03 Mar 2017 UTC: INFO: QC.py(180): Changed (15/635) 1:6 245:250 633:635 to QC_BAD because changed corrected salin implies changed speed 01:21:00 03 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:21:00 03 Mar 2017 UTC: INFO: QC.py(180): Changed (18/635) 203 205 207 210:213 215 219 220 226 231 238 253 ... to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 01:21:00 03 Mar 2017 UTC: INFO: QC.py(180): Changed (18/635) 203 205 207 210:213 215 219 220 226 231 238 253 ... to QC_INTERPOLATED because changed corrected temp implies changed speed 01:21:00 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.31 cm/s 01:21:00 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.76 cm/s 01:21:00 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:21:00 03 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (188/635) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:21:00 03 Mar 2017 UTC: INFO: QC.py(180): Changed (5/635) 211 226 231 266 634 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 01:21:00 03 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (188/635) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 01:21:00 03 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/635) 631 to QC_BAD because bad aa4330 oyxgen 01:21:00 03 Mar 2017 UTC: INFO: QC.py(180): Changed (5/635) 211 226 231 266 634 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 01:21:00 03 Mar 2017 UTC: INFO: QC.py(180): Changed (15/635) 1:6 245:250 633:635 to QC_BAD because changed salinity implies changed optode oxygen 01:21:00 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:21:00 03 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:21:00 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:21:01 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 307: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.36% reduction 01:21:01 03 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.307 01:21:01 03 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:21:01 03 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:21:01 03 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:21:01 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:21:01 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 01:23:28 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 01:23:29 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 01:23:29 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 01:23:57 03 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:23:57 03 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:23:57 03 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:23:57 03 Mar 2017 UTC /home/sg626/p6260307.log /home/sg626/p6260307.eng /home/sg626/p6260307.asc /home/sg626/p6260307.pro /home/sg626/p6260307.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 01:23:57 03 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:23:57 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:23:57 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:23:57 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:23:57 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:23:57 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:23:57 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:23:57 03 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:23:57 03 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:23:57 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:23:57 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:23:57 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:23:57 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:23:57 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:23:57 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:23:57 03 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:23:57 03 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:23:57 03 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:23:57 03 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:23:57 03 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:23:57 03 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:23:57 03 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:23:57 03 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:23:57 03 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 01:23:57 03 Mar 2017 UTC 04:51:20 03 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9349 04:51:20 03 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:54:12 03 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9547 04:54:12 03 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:54:12 03 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:54:12 03 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:54:12 03 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:54:12 03 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170302185411 ] 04:54:12 03 Mar 2017 UTC: INFO: Base.py(1333): PID:9554 04:54:12 03 Mar 2017 UTC: INFO: Base.py(1375): Started processing 04:54:12 03 Mar 2017 UTC 04:54:12 03 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:54:13 03 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:54:13 03 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:54:13 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:54:13 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:308 calls_made:2 call_cycle:0 04:54:13 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:54:13 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:308 calls_made:2 call_cycle:0 04:54:13 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:54:13 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:308 calls_made:2 call_cycle:0 04:54:13 03 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:308 calls_made:2 call_cycle:0 2253.8690 -15716.2880 03/03/17 04:46:50 UTC) to sdrifter@soest.hawaii.edu 04:54:13 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:308 calls_made:2 call_cycle:0 04:54:13 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:54:13 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:308 calls_made:2 call_cycle:0 04:54:13 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:54:13 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:308 calls_made:2 call_cycle:0 04:54:13 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:54:13 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:308 calls_made:2 call_cycle:0 04:54:13 03 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:54:13 03 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:54:18 03 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:54:19 03 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:54:19 03 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:54:19 03 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:54:19 03 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:54:19 03 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:54:20 03 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0308lz 04:54:20 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0308lz.x00 04:54:20 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0308lz.x01 04:54:20 03 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0308lz.r in process_file_group 04:54:20 03 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260308.log 04:54:20 03 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:54:20 03 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0308dz 04:54:20 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0308dz.x00 04:54:20 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0308dz.x01 04:54:20 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0308dz.x02 04:54:20 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0308dz.x03 04:54:20 03 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0308dz.r in process_file_group 04:54:21 03 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [308] 04:54:21 03 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [308] 04:54:21 03 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260308) for profiles 04:54:21 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 04:54:21 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/621) 620 621 to QC_BAD because CT out of water 04:54:21 03 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.090m) 04:54:21 03 Mar 2017 UTC: INFO: QC.py(365): Changed (11/621) 2 4 5 199 204 215 218 243 266 270 620 to QC_PROBABLY_BAD because raw temperature spikes 04:54:21 03 Mar 2017 UTC: INFO: QC.py(377): Changed (1/621) 620 to QC_BAD because raw salinity below bound 04:54:21 03 Mar 2017 UTC: INFO: QC.py(408): Changed (5/621) 204 215 262 266 270 to QC_PROBABLY_BAD because raw conductivity spikes 04:54:21 03 Mar 2017 UTC: INFO: QC.py(180): Changed (10/621) 2 4 5 199 204 215 218 243 266 270 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:54:21 03 Mar 2017 UTC: INFO: QC.py(180): Changed (1/621) 262 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 04:54:21 03 Mar 2017 UTC: INFO: QC.py(180): Changed (1/621) 621 to QC_BAD because changed raw cond implies changed raw salinity 04:54:21 03 Mar 2017 UTC: INFO: QC.py(365): Changed (11/621) 2 4 5 199 204 215 218 243 266 270 620 to QC_INTERPOLATED because temperature spikes 04:54:21 03 Mar 2017 UTC: INFO: QC.py(377): Changed (1/621) 620 to QC_BAD because salinity below bound 04:54:21 03 Mar 2017 UTC: INFO: QC.py(408): Changed (5/621) 204 215 262 266 270 to QC_INTERPOLATED because conductivity spikes 04:54:21 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/621) 241:246 to QC_BAD because slow apogee CT flow 04:54:21 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/621) 1:7 to QC_BAD because prior to dive start 04:54:21 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/621) 619 to QC_BAD because end of climb 04:54:21 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/621) 1:7 241:246 619:621 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:54:21 03 Mar 2017 UTC: INFO: QC.py(180): Changed (16/621) 1:7 241:246 619:621 to QC_BAD because changed corrected salin implies changed speed 04:54:22 03 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:54:22 03 Mar 2017 UTC: INFO: QC.py(180): Changed (6/621) 199 204 215 218 266 270 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 04:54:22 03 Mar 2017 UTC: INFO: QC.py(180): Changed (1/621) 262 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 04:54:22 03 Mar 2017 UTC: INFO: QC.py(180): Changed (6/621) 199 204 215 218 266 270 to QC_INTERPOLATED because changed corrected temp implies changed speed 04:54:22 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.83 cm/s 04:54:22 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.54 cm/s 04:54:22 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:54:22 03 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (180/621) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:54:22 03 Mar 2017 UTC: INFO: QC.py(180): Changed (5/621) 2 4 5 266 620 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:54:22 03 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (180/621) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 04:54:22 03 Mar 2017 UTC: INFO: QC.py(180): Changed (5/621) 2 4 5 266 620 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:54:22 03 Mar 2017 UTC: INFO: QC.py(180): Changed (16/621) 1:7 241:246 619:621 to QC_BAD because changed salinity implies changed optode oxygen 04:54:22 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:54:22 03 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:54:22 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 04:54:22 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 308: Data set size for profile, binned and kkyy files reduced by 16 points, a 2.58% reduction 04:54:22 03 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.308 04:54:22 03 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:54:22 03 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:54:22 03 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:54:22 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 04:54:22 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 04:56:51 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 04:56:52 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 04:56:52 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 04:57:20 03 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:57:20 03 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:57:20 03 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:57:20 03 Mar 2017 UTC /home/sg626/p6260308.log /home/sg626/p6260308.eng /home/sg626/p6260308.asc /home/sg626/p6260308.pro /home/sg626/p6260308.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 04:57:20 03 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:57:20 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:57:20 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:57:20 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:57:20 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:57:20 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:57:20 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:57:20 03 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:57:20 03 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:57:20 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:57:20 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:57:20 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:57:20 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:57:20 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:57:20 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:57:20 03 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:57:20 03 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:57:20 03 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:57:20 03 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:57:20 03 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:57:20 03 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:57:20 03 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:57:20 03 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:57:20 03 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 04:57:20 03 Mar 2017 UTC 08:33:41 03 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 20971 08:33:41 03 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:36:29 03 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 21152 08:36:29 03 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:36:29 03 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:36:29 03 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:36:29 03 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:36:29 03 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170302223629 ] 08:36:29 03 Mar 2017 UTC: INFO: Base.py(1333): PID:21160 08:36:29 03 Mar 2017 UTC: INFO: Base.py(1375): Started processing 08:36:29 03 Mar 2017 UTC 08:36:29 03 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:36:30 03 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:36:30 03 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:36:30 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:36:30 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:309 calls_made:1 call_cycle:0 08:36:30 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:36:30 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:309 calls_made:1 call_cycle:0 08:36:30 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:36:30 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:309 calls_made:1 call_cycle:0 08:36:30 03 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:309 calls_made:1 call_cycle:0 2253.9270 -15717.6530 03/03/17 08:31:30 UTC) to sdrifter@soest.hawaii.edu 08:36:30 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:309 calls_made:1 call_cycle:0 08:36:30 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:36:30 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:309 calls_made:1 call_cycle:0 08:36:30 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:36:30 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:309 calls_made:1 call_cycle:0 08:36:30 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:36:30 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:309 calls_made:1 call_cycle:0 08:36:30 03 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:36:30 03 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:36:35 03 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:36:36 03 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:36:36 03 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:36:36 03 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:36:36 03 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:36:36 03 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:36:38 03 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0309lz 08:36:38 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0309lz.x00 08:36:38 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0309lz.x01 08:36:38 03 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0309lz.r in process_file_group 08:36:38 03 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260309.log 08:36:38 03 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:36:38 03 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0309dz 08:36:38 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0309dz.x00 08:36:38 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0309dz.x01 08:36:38 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0309dz.x02 08:36:38 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0309dz.x03 08:36:38 03 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0309dz.r in process_file_group 08:36:38 03 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [309] 08:36:38 03 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [309] 08:36:38 03 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260309) for profiles 08:36:38 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:36:38 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/674) 673 to QC_BAD because CT out of water 08:36:38 03 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.002m) 08:36:38 03 Mar 2017 UTC: INFO: QC.py(365): Changed (15/674) 2 3 206 209 219 220 233 267 271:273 278 280 281 ... to QC_PROBABLY_BAD because raw temperature spikes 08:36:38 03 Mar 2017 UTC: INFO: QC.py(377): Changed (3/674) 672:674 to QC_BAD because raw salinity below bound 08:36:38 03 Mar 2017 UTC: INFO: QC.py(388): Changed (2/674) 672 674 to QC_BAD because bad raw salinity indicates raw conductivity issues 08:36:38 03 Mar 2017 UTC: INFO: QC.py(408): Changed (12/674) 203 206 209 219 220 233 267 271:273 278 290 to QC_PROBABLY_BAD because raw conductivity spikes 08:36:38 03 Mar 2017 UTC: INFO: QC.py(180): Changed (15/674) 2 3 206 209 219 220 233 267 271:273 278 280 281 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:36:38 03 Mar 2017 UTC: INFO: QC.py(180): Changed (1/674) 203 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 08:36:38 03 Mar 2017 UTC: INFO: QC.py(365): Changed (15/674) 2 3 206 209 219 220 233 267 271:273 278 280 281 ... to QC_INTERPOLATED because temperature spikes 08:36:38 03 Mar 2017 UTC: INFO: QC.py(377): Changed (3/674) 672:674 to QC_BAD because salinity below bound 08:36:38 03 Mar 2017 UTC: INFO: QC.py(388): Changed (2/674) 672 674 to QC_BAD because bad salinity indicates conductivity issues 08:36:38 03 Mar 2017 UTC: INFO: QC.py(408): Changed (12/674) 203 206 209 219 220 233 267 271:273 278 290 to QC_INTERPOLATED because conductivity spikes 08:36:38 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/674) 252:257 to QC_BAD because slow apogee CT flow 08:36:38 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/674) 1:6 to QC_BAD because prior to dive start 08:36:38 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/674) 1:6 252:257 672:674 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:36:38 03 Mar 2017 UTC: INFO: QC.py(180): Changed (15/674) 1:6 252:257 672:674 to QC_BAD because changed corrected salin implies changed speed 08:36:39 03 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:36:39 03 Mar 2017 UTC: INFO: QC.py(180): Changed (13/674) 206 209 219 220 233 267 271:273 278 280 281 290 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 08:36:39 03 Mar 2017 UTC: INFO: QC.py(180): Changed (1/674) 203 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 08:36:39 03 Mar 2017 UTC: INFO: QC.py(180): Changed (13/674) 206 209 219 220 233 267 271:273 278 280 281 290 to QC_INTERPOLATED because changed corrected temp implies changed speed 08:36:39 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.54 cm/s 08:36:39 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.71 cm/s 08:36:39 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:36:39 03 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (190/674) 133:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:36:39 03 Mar 2017 UTC: INFO: QC.py(180): Changed (5/674) 2 3 206 271 281 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:36:39 03 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (190/674) 133:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:36:39 03 Mar 2017 UTC: INFO: QC.py(180): Changed (5/674) 2 3 206 271 281 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:36:39 03 Mar 2017 UTC: INFO: QC.py(180): Changed (15/674) 1:6 252:257 672:674 to QC_BAD because changed salinity implies changed optode oxygen 08:36:39 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:36:39 03 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:36:39 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 08:36:39 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 309: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.23% reduction 08:36:39 03 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.309 08:36:39 03 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:36:39 03 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:36:39 03 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:36:40 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 08:36:40 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 08:39:08 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 08:39:09 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 08:39:09 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 08:39:37 03 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:39:37 03 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:39:37 03 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:39:37 03 Mar 2017 UTC /home/sg626/p6260309.log /home/sg626/p6260309.eng /home/sg626/p6260309.asc /home/sg626/p6260309.pro /home/sg626/p6260309.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 08:39:37 03 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:39:37 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:39:37 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:39:37 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:39:37 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:39:37 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:39:37 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:39:37 03 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:39:37 03 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:39:37 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:39:37 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:39:37 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:39:37 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:39:37 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:39:37 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:39:37 03 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:39:37 03 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:39:37 03 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:39:37 03 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:39:37 03 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:39:37 03 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:39:37 03 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:39:37 03 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:39:37 03 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 08:39:37 03 Mar 2017 UTC 12:17:54 03 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 29746 12:17:54 03 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:20:54 03 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 29963 12:20:54 03 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:20:54 03 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:20:54 03 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:20:54 03 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:20:54 03 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170303022053 ] 12:20:54 03 Mar 2017 UTC: INFO: Base.py(1333): PID:29970 12:20:54 03 Mar 2017 UTC: INFO: Base.py(1375): Started processing 12:20:54 03 Mar 2017 UTC 12:20:54 03 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:20:55 03 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:20:55 03 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:20:55 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:20:55 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:310 calls_made:2 call_cycle:0 12:20:55 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:20:55 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:310 calls_made:2 call_cycle:0 12:20:55 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:20:55 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:310 calls_made:2 call_cycle:0 12:20:55 03 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:310 calls_made:2 call_cycle:0 2253.1650 -15718.9860 03/03/17 12:13:24 UTC) to sdrifter@soest.hawaii.edu 12:20:55 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:310 calls_made:2 call_cycle:0 12:20:55 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:20:55 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:310 calls_made:2 call_cycle:0 12:20:55 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:20:55 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:310 calls_made:2 call_cycle:0 12:20:55 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:20:55 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:310 calls_made:2 call_cycle:0 12:20:55 03 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:20:55 03 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:21:00 03 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:21:01 03 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:21:01 03 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:21:01 03 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:21:01 03 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:21:01 03 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:21:02 03 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0310lz 12:21:02 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0310lz.x00 12:21:02 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0310lz.x01 12:21:02 03 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0310lz.r in process_file_group 12:21:02 03 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260310.log 12:21:02 03 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:21:02 03 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0310dz 12:21:02 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0310dz.x00 12:21:02 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0310dz.x01 12:21:02 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0310dz.x02 12:21:02 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0310dz.x03 12:21:02 03 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0310dz.r in process_file_group 12:21:03 03 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [310] 12:21:03 03 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [310] 12:21:03 03 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260310) for profiles 12:21:03 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 12:21:03 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/660) 658:660 to QC_BAD because CT out of water 12:21:03 03 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.133m) 12:21:03 03 Mar 2017 UTC: INFO: QC.py(365): Changed (12/660) 209 210 223 224 231 232 237 238 255:257 659 to QC_PROBABLY_BAD because raw temperature spikes 12:21:03 03 Mar 2017 UTC: INFO: QC.py(377): Changed (1/660) 660 to QC_BAD because raw salinity below bound 12:21:03 03 Mar 2017 UTC: INFO: QC.py(408): Changed (12/660) 209 210 223 224 231 232 237 238 255:257 263 to QC_PROBABLY_BAD because raw conductivity spikes 12:21:03 03 Mar 2017 UTC: INFO: QC.py(180): Changed (12/660) 209 210 223 224 231 232 237 238 255:257 659 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 12:21:03 03 Mar 2017 UTC: INFO: QC.py(180): Changed (1/660) 263 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 12:21:03 03 Mar 2017 UTC: INFO: QC.py(180): Changed (2/660) 658 659 to QC_BAD because changed raw cond implies changed raw salinity 12:21:03 03 Mar 2017 UTC: INFO: QC.py(365): Changed (12/660) 209 210 223 224 231 232 237 238 255:257 659 to QC_INTERPOLATED because temperature spikes 12:21:03 03 Mar 2017 UTC: INFO: QC.py(377): Changed (1/660) 660 to QC_BAD because salinity below bound 12:21:03 03 Mar 2017 UTC: INFO: QC.py(408): Changed (12/660) 209 210 223 224 231 232 237 238 255:257 263 to QC_INTERPOLATED because conductivity spikes 12:21:03 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/660) 247:251 to QC_BAD because slow apogee CT flow 12:21:03 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/660) 1:6 to QC_BAD because prior to dive start 12:21:03 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/660) 1:6 247:251 658:660 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:21:03 03 Mar 2017 UTC: INFO: QC.py(180): Changed (14/660) 1:6 247:251 658:660 to QC_BAD because changed corrected salin implies changed speed 12:21:04 03 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:21:04 03 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 310 interp_salinity data_points in_between 337 355 % suspect thermal-inertia points 339 12:21:04 03 Mar 2017 UTC: INFO: QC.py(180): Changed (11/660) 209 210 223 224 231 232 237 238 255:257 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 12:21:04 03 Mar 2017 UTC: INFO: QC.py(180): Changed (1/660) 263 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 12:21:04 03 Mar 2017 UTC: INFO: QC.py(180): Changed (11/660) 209 210 223 224 231 232 237 238 255:257 to QC_INTERPOLATED because changed corrected temp implies changed speed 12:21:04 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.14 cm/s 12:21:04 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.84 cm/s 12:21:04 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:21:04 03 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (190/660) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:21:04 03 Mar 2017 UTC: INFO: QC.py(180): Changed (3/660) 231 256 659 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 12:21:04 03 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (190/660) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 12:21:04 03 Mar 2017 UTC: INFO: QC.py(180): Changed (3/660) 231 256 659 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 12:21:04 03 Mar 2017 UTC: INFO: QC.py(180): Changed (14/660) 1:6 247:251 658:660 to QC_BAD because changed salinity implies changed optode oxygen 12:21:04 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:21:04 03 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:21:04 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 12:21:04 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 310: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.12% reduction 12:21:04 03 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.310 12:21:04 03 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:21:04 03 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:21:04 03 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:21:04 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 12:21:04 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 12:23:33 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 12:23:34 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 12:23:34 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 12:24:03 03 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:24:03 03 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:24:03 03 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 12:24:03 03 Mar 2017 UTC /home/sg626/p6260310.log /home/sg626/p6260310.eng /home/sg626/p6260310.asc /home/sg626/p6260310.pro /home/sg626/p6260310.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 12:24:03 03 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:24:03 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:24:03 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:24:03 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:24:03 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:24:03 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:24:03 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:24:03 03 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:24:03 03 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:24:03 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:24:03 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:24:03 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:24:03 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:24:03 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:24:03 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:24:03 03 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:24:03 03 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 12:24:03 03 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 12:24:03 03 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 12:24:03 03 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 12:24:03 03 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:24:03 03 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:24:03 03 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:24:03 03 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 12:24:03 03 Mar 2017 UTC 15:59:51 03 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 3862 15:59:51 03 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:02:45 03 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 4238 16:02:45 03 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:02:45 03 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:02:45 03 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:02:45 03 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:02:45 03 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170303060244 ] 16:02:45 03 Mar 2017 UTC: INFO: Base.py(1333): PID:4245 16:02:45 03 Mar 2017 UTC: INFO: Base.py(1375): Started processing 16:02:45 03 Mar 2017 UTC 16:02:45 03 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:02:46 03 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:02:46 03 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:02:46 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:02:46 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:311 calls_made:1 call_cycle:0 16:02:46 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:02:46 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:311 calls_made:1 call_cycle:0 16:02:46 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:02:46 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:311 calls_made:1 call_cycle:0 16:02:46 03 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:311 calls_made:1 call_cycle:0 2251.8270 -15720.0580 03/03/17 15:57:31 UTC) to sdrifter@soest.hawaii.edu 16:02:46 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:311 calls_made:1 call_cycle:0 16:02:46 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:02:46 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:311 calls_made:1 call_cycle:0 16:02:46 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:02:46 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:311 calls_made:1 call_cycle:0 16:02:46 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:02:46 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:311 calls_made:1 call_cycle:0 16:02:46 03 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:02:46 03 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:02:51 03 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:02:52 03 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:02:52 03 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:02:52 03 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:02:52 03 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:02:52 03 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:02:53 03 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0311lz 16:02:53 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0311lz.x00 16:02:53 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0311lz.x01 16:02:53 03 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0311lz.r in process_file_group 16:02:53 03 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260311.log 16:02:53 03 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:02:53 03 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0311dz 16:02:53 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0311dz.x00 16:02:53 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0311dz.x01 16:02:53 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0311dz.x02 16:02:53 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0311dz.x03 16:02:53 03 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0311dz.r in process_file_group 16:02:54 03 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [311] 16:02:54 03 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [311] 16:02:54 03 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260311) for profiles 16:02:54 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:02:54 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/666) 664:666 to QC_BAD because CT out of water 16:02:54 03 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.096m) 16:02:54 03 Mar 2017 UTC: INFO: QC.py(365): Changed (13/666) 205 206 211 216 231 232 241 256 263 267 269 274 ... to QC_PROBABLY_BAD because raw temperature spikes 16:02:54 03 Mar 2017 UTC: INFO: QC.py(377): Changed (1/666) 665 to QC_BAD because raw salinity below bound 16:02:54 03 Mar 2017 UTC: INFO: QC.py(408): Changed (9/666) 205 206 211 216 231 241 274 280 292 to QC_PROBABLY_BAD because raw conductivity spikes 16:02:54 03 Mar 2017 UTC: INFO: QC.py(180): Changed (13/666) 205 206 211 216 231 232 241 256 263 267 269 274 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:02:54 03 Mar 2017 UTC: INFO: QC.py(180): Changed (1/666) 292 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 16:02:54 03 Mar 2017 UTC: INFO: QC.py(180): Changed (2/666) 664 666 to QC_BAD because changed raw cond implies changed raw salinity 16:02:54 03 Mar 2017 UTC: INFO: QC.py(365): Changed (13/666) 205 206 211 216 231 232 241 256 263 267 269 274 ... to QC_INTERPOLATED because temperature spikes 16:02:54 03 Mar 2017 UTC: INFO: QC.py(377): Changed (1/666) 665 to QC_BAD because salinity below bound 16:02:54 03 Mar 2017 UTC: INFO: QC.py(408): Changed (9/666) 205 206 211 216 231 241 274 280 292 to QC_INTERPOLATED because conductivity spikes 16:02:54 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/666) 254:258 to QC_BAD because slow apogee CT flow 16:02:54 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/666) 1:6 to QC_BAD because prior to dive start 16:02:54 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/666) 1:6 254:258 664:666 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:02:54 03 Mar 2017 UTC: INFO: QC.py(180): Changed (14/666) 1:6 254:258 664:666 to QC_BAD because changed corrected salin implies changed speed 16:02:55 03 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:02:55 03 Mar 2017 UTC: INFO: QC.py(180): Changed (12/666) 205 206 211 216 231 232 241 263 267 269 274 280 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 16:02:55 03 Mar 2017 UTC: INFO: QC.py(180): Changed (1/666) 292 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 16:02:55 03 Mar 2017 UTC: INFO: QC.py(180): Changed (12/666) 205 206 211 216 231 232 241 263 267 269 274 280 to QC_INTERPOLATED because changed corrected temp implies changed speed 16:02:55 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.15 cm/s 16:02:55 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.85 cm/s 16:02:55 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:02:55 03 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (189/666) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:02:55 03 Mar 2017 UTC: INFO: QC.py(180): Changed (6/666) 206 211 216 231 241 256 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:02:55 03 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (189/666) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:02:55 03 Mar 2017 UTC: INFO: QC.py(180): Changed (6/666) 206 211 216 231 241 256 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:02:55 03 Mar 2017 UTC: INFO: QC.py(180): Changed (14/666) 1:6 254:258 664:666 to QC_BAD because changed salinity implies changed optode oxygen 16:02:55 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:02:55 03 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:02:55 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:02:55 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 311: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.10% reduction 16:02:55 03 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.311 16:02:55 03 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:02:55 03 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:02:55 03 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:02:56 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:02:56 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:05:25 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 16:05:26 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:05:26 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:05:54 03 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:05:54 03 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:05:54 03 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:05:54 03 Mar 2017 UTC /home/sg626/p6260311.log /home/sg626/p6260311.eng /home/sg626/p6260311.asc /home/sg626/p6260311.pro /home/sg626/p6260311.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:05:54 03 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:05:54 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:05:54 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:05:54 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:05:54 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:05:54 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:05:54 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:05:54 03 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:05:54 03 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:05:54 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:05:54 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:05:54 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:05:54 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:05:54 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:05:54 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:05:54 03 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:05:54 03 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:05:54 03 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:05:54 03 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:05:54 03 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:05:54 03 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:05:54 03 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:05:54 03 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:05:54 03 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 16:05:54 03 Mar 2017 UTC 19:39:24 03 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 11950 19:39:24 03 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:42:14 03 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 12204 19:42:14 03 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:42:14 03 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:42:14 03 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:42:14 03 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:42:14 03 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170303094213 ] 19:42:14 03 Mar 2017 UTC: INFO: Base.py(1333): PID:12211 19:42:14 03 Mar 2017 UTC: INFO: Base.py(1375): Started processing 19:42:14 03 Mar 2017 UTC 19:42:14 03 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:42:15 03 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:42:15 03 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:42:15 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:42:15 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:312 calls_made:1 call_cycle:0 19:42:15 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:42:15 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:312 calls_made:1 call_cycle:0 19:42:15 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:42:15 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:312 calls_made:1 call_cycle:0 19:42:15 03 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:312 calls_made:1 call_cycle:0 2252.3500 -15721.2490 03/03/17 19:36:55 UTC) to sdrifter@soest.hawaii.edu 19:42:15 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:312 calls_made:1 call_cycle:0 19:42:15 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:42:15 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:312 calls_made:1 call_cycle:0 19:42:15 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:42:15 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:312 calls_made:1 call_cycle:0 19:42:15 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:42:15 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:312 calls_made:1 call_cycle:0 19:42:15 03 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:42:15 03 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:42:20 03 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:42:20 03 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:42:20 03 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:42:20 03 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:42:20 03 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:42:20 03 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:42:22 03 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0312lz 19:42:22 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0312lz.x00 19:42:22 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0312lz.x01 19:42:22 03 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0312lz.r in process_file_group 19:42:22 03 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260312.log 19:42:22 03 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:42:22 03 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0312dz 19:42:22 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0312dz.x00 19:42:22 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0312dz.x01 19:42:22 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0312dz.x02 19:42:22 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0312dz.x03 19:42:22 03 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0312dz.r in process_file_group 19:42:22 03 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [312] 19:42:22 03 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [312] 19:42:23 03 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260312) for profiles 19:42:23 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 19:42:23 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/636) 635 636 to QC_BAD because CT out of water 19:42:23 03 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.086m) 19:42:23 03 Mar 2017 UTC: INFO: QC.py(365): Changed (14/636) 2 5 223 225 240 243:246 249 257 264 265 269 to QC_PROBABLY_BAD because raw temperature spikes 19:42:23 03 Mar 2017 UTC: INFO: QC.py(377): Changed (1/636) 636 to QC_BAD because raw salinity below bound 19:42:23 03 Mar 2017 UTC: INFO: QC.py(408): Changed (11/636) 223 240 243:246 249 257 264 265 269 to QC_PROBABLY_BAD because raw conductivity spikes 19:42:23 03 Mar 2017 UTC: INFO: QC.py(180): Changed (14/636) 2 5 223 225 240 243:246 249 257 264 265 269 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:42:23 03 Mar 2017 UTC: INFO: QC.py(180): Changed (1/636) 635 to QC_BAD because changed raw cond implies changed raw salinity 19:42:23 03 Mar 2017 UTC: INFO: QC.py(365): Changed (14/636) 2 5 223 225 240 243:246 249 257 264 265 269 to QC_INTERPOLATED because temperature spikes 19:42:23 03 Mar 2017 UTC: INFO: QC.py(377): Changed (1/636) 636 to QC_BAD because salinity below bound 19:42:23 03 Mar 2017 UTC: INFO: QC.py(408): Changed (11/636) 223 240 243:246 249 257 264 265 269 to QC_INTERPOLATED because conductivity spikes 19:42:23 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/636) 255:259 to QC_BAD because slow apogee CT flow 19:42:23 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/636) 1:7 to QC_BAD because prior to dive start 19:42:23 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/636) 633 634 to QC_BAD because end of climb 19:42:23 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/636) 1:7 255:259 633:636 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:42:23 03 Mar 2017 UTC: INFO: QC.py(180): Changed (16/636) 1:7 255:259 633:636 to QC_BAD because changed corrected salin implies changed speed 19:42:23 03 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:42:23 03 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 312 interp_salinity data_points in_between 313 373 % suspect thermal-inertia points 353 19:42:23 03 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 312 interp_salinity data_points in_between 380 385 % suspect thermal-inertia points 381 19:42:23 03 Mar 2017 UTC: INFO: QC.py(180): Changed (11/636) 223 225 240 243:246 249 264 265 269 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 19:42:23 03 Mar 2017 UTC: INFO: QC.py(180): Changed (11/636) 223 225 240 243:246 249 264 265 269 to QC_INTERPOLATED because changed corrected temp implies changed speed 19:42:23 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.38 cm/s 19:42:23 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.79 cm/s 19:42:23 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:42:23 03 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (194/636) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:42:23 03 Mar 2017 UTC: INFO: QC.py(180): Changed (3/636) 2 5 246 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 19:42:23 03 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (194/636) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 19:42:23 03 Mar 2017 UTC: INFO: QC.py(180): Changed (3/636) 2 5 246 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 19:42:23 03 Mar 2017 UTC: INFO: QC.py(180): Changed (16/636) 1:7 255:259 633:636 to QC_BAD because changed salinity implies changed optode oxygen 19:42:23 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:42:23 03 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:42:23 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 19:42:24 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 312: Data set size for profile, binned and kkyy files reduced by 16 points, a 2.52% reduction 19:42:24 03 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.312 19:42:24 03 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:42:24 03 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:42:24 03 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:42:24 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 19:42:24 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 19:44:54 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 19:44:55 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 19:44:55 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 19:45:24 03 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:45:24 03 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:45:24 03 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:45:24 03 Mar 2017 UTC /home/sg626/p6260312.log /home/sg626/p6260312.eng /home/sg626/p6260312.asc /home/sg626/p6260312.pro /home/sg626/p6260312.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 19:45:24 03 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:45:24 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:45:24 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:45:24 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:45:24 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:45:24 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:45:24 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:45:24 03 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:45:24 03 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:45:24 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:45:24 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:45:24 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:45:24 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:45:24 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:45:24 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:45:24 03 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:45:24 03 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:45:24 03 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:45:24 03 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:45:24 03 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:45:24 03 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:45:24 03 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:45:24 03 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:45:24 03 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 19:45:24 03 Mar 2017 UTC 23:17:34 03 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 18310 23:17:34 03 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 23:20:28 03 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 18515 23:20:28 03 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:20:28 03 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:20:28 03 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:20:28 03 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:20:28 03 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170303132027 ] 23:20:28 03 Mar 2017 UTC: INFO: Base.py(1333): PID:18523 23:20:28 03 Mar 2017 UTC: INFO: Base.py(1375): Started processing 23:20:28 03 Mar 2017 UTC 23:20:28 03 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:20:29 03 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:20:29 03 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:20:29 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:20:29 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:313 calls_made:1 call_cycle:0 23:20:29 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:20:29 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:313 calls_made:1 call_cycle:0 23:20:29 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:20:29 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:313 calls_made:1 call_cycle:0 23:20:29 03 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:313 calls_made:1 call_cycle:0 2252.1270 -15722.4310 03/03/17 23:15:24 UTC) to sdrifter@soest.hawaii.edu 23:20:34 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:313 calls_made:1 call_cycle:0 23:20:34 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:20:34 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:313 calls_made:1 call_cycle:0 23:20:34 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:20:34 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:313 calls_made:1 call_cycle:0 23:20:34 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:20:34 03 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:313 calls_made:1 call_cycle:0 23:20:34 03 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:20:34 03 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:20:39 03 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:20:40 03 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:20:40 03 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:20:40 03 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:20:40 03 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:20:40 03 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:20:42 03 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0313lz 23:20:42 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0313lz.x00 23:20:42 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0313lz.x01 23:20:42 03 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0313lz.r in process_file_group 23:20:42 03 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260313.log 23:20:42 03 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:20:42 03 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0313dz 23:20:42 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0313dz.x00 23:20:42 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0313dz.x01 23:20:42 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0313dz.x02 23:20:42 03 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0313dz.x03 23:20:42 03 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0313dz.r in process_file_group 23:20:42 03 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [313] 23:20:42 03 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [313] 23:20:42 03 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260313) for profiles 23:20:42 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 23:20:42 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/652) 651 652 to QC_BAD because CT out of water 23:20:42 03 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.155m) 23:20:42 03 Mar 2017 UTC: INFO: QC.py(365): Changed (6/652) 2 225 250 260 262 263 to QC_PROBABLY_BAD because raw temperature spikes 23:20:42 03 Mar 2017 UTC: INFO: QC.py(377): Changed (1/652) 652 to QC_BAD because raw salinity below bound 23:20:42 03 Mar 2017 UTC: INFO: QC.py(408): Changed (7/652) 219 222 228 250 260 262 263 to QC_PROBABLY_BAD because raw conductivity spikes 23:20:42 03 Mar 2017 UTC: INFO: QC.py(180): Changed (6/652) 2 225 250 260 262 263 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 23:20:42 03 Mar 2017 UTC: INFO: QC.py(180): Changed (3/652) 219 222 228 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 23:20:42 03 Mar 2017 UTC: INFO: QC.py(180): Changed (1/652) 651 to QC_BAD because changed raw cond implies changed raw salinity 23:20:42 03 Mar 2017 UTC: INFO: QC.py(365): Changed (6/652) 2 225 250 260 262 263 to QC_INTERPOLATED because temperature spikes 23:20:42 03 Mar 2017 UTC: INFO: QC.py(377): Changed (1/652) 652 to QC_BAD because salinity below bound 23:20:42 03 Mar 2017 UTC: INFO: QC.py(408): Changed (7/652) 219 222 228 250 260 262 263 to QC_INTERPOLATED because conductivity spikes 23:20:42 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/652) 248:252 to QC_BAD because slow apogee CT flow 23:20:42 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/652) 1:6 to QC_BAD because prior to dive start 23:20:42 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/652) 650 to QC_BAD because end of climb 23:20:42 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/652) 1:6 248:252 650:652 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 23:20:42 03 Mar 2017 UTC: INFO: QC.py(180): Changed (14/652) 1:6 248:252 650:652 to QC_BAD because changed corrected salin implies changed speed 23:20:43 03 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 23:20:43 03 Mar 2017 UTC: INFO: QC.py(180): Changed (4/652) 225 260 262 263 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 23:20:43 03 Mar 2017 UTC: INFO: QC.py(180): Changed (3/652) 219 222 228 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 23:20:43 03 Mar 2017 UTC: INFO: QC.py(180): Changed (4/652) 225 260 262 263 to QC_INTERPOLATED because changed corrected temp implies changed speed 23:20:43 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.87 cm/s 23:20:43 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.99 cm/s 23:20:43 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 23:20:43 03 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (187/652) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 23:20:43 03 Mar 2017 UTC: INFO: QC.py(180): Changed (1/652) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 23:20:43 03 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (187/652) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 23:20:43 03 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/652) 645 651 to QC_BAD because bad aa4330 oyxgen 23:20:43 03 Mar 2017 UTC: INFO: QC.py(180): Changed (1/652) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 23:20:43 03 Mar 2017 UTC: INFO: QC.py(180): Changed (13/652) 1:6 248:252 650 652 to QC_BAD because changed salinity implies changed optode oxygen 23:20:43 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 23:20:43 03 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 23:20:43 03 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 23:20:44 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 313: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.15% reduction 23:20:44 03 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.313 23:20:44 03 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:20:44 03 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:20:44 03 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:20:44 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 23:20:44 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 23:23:14 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 23:23:15 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 23:23:15 03 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 23:23:44 03 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:23:44 03 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:23:44 03 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:23:44 03 Mar 2017 UTC /home/sg626/p6260313.log /home/sg626/p6260313.eng /home/sg626/p6260313.asc /home/sg626/p6260313.pro /home/sg626/p6260313.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 23:23:44 03 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:23:44 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:23:44 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:23:44 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:23:44 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:23:44 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:23:44 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:23:44 03 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:23:44 03 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:23:44 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:23:44 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:23:44 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:23:44 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:23:44 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:23:44 03 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:23:44 03 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:23:44 03 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:23:44 03 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:23:44 03 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:23:44 03 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:23:44 03 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:23:44 03 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:23:44 03 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:23:44 03 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 23:23:44 03 Mar 2017 UTC 02:55:02 04 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 24218 02:55:02 04 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:58:05 04 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 24340 02:58:05 04 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:58:05 04 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:58:05 04 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:58:05 04 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:58:05 04 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170303165804 ] 02:58:05 04 Mar 2017 UTC: INFO: Base.py(1333): PID:24347 02:58:05 04 Mar 2017 UTC: INFO: Base.py(1375): Started processing 02:58:05 04 Mar 2017 UTC 02:58:05 04 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:58:06 04 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:58:06 04 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:58:06 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:58:06 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:314 calls_made:1 call_cycle:0 02:58:06 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:58:06 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:314 calls_made:1 call_cycle:0 02:58:06 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:58:06 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:314 calls_made:1 call_cycle:0 02:58:06 04 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:314 calls_made:1 call_cycle:0 2251.4980 -15722.9760 03/04/17 02:52:52 UTC) to sdrifter@soest.hawaii.edu 02:58:06 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:314 calls_made:1 call_cycle:0 02:58:06 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:58:06 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:314 calls_made:1 call_cycle:0 02:58:06 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:58:06 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:314 calls_made:1 call_cycle:0 02:58:06 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:58:06 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:314 calls_made:1 call_cycle:0 02:58:06 04 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:58:06 04 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:58:11 04 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:58:12 04 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:58:12 04 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:58:12 04 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:58:12 04 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:58:12 04 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:58:14 04 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0314lz 02:58:14 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0314lz.x00 02:58:14 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0314lz.x01 02:58:14 04 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0314lz.r in process_file_group 02:58:14 04 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260314.log 02:58:14 04 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 02:58:14 04 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0314dz 02:58:14 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0314dz.x00 02:58:14 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0314dz.x01 02:58:14 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0314dz.x02 02:58:14 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0314dz.x03 02:58:14 04 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0314dz.r in process_file_group 02:58:14 04 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [314] 02:58:14 04 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [314] 02:58:14 04 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260314) for profiles 02:58:14 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 02:58:14 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/645) 644 to QC_BAD because CT out of water 02:58:14 04 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.110m) 02:58:14 04 Mar 2017 UTC: INFO: QC.py(365): Changed (13/645) 2 209 213 216 219 222 223 231 249 254 264 266 644 to QC_PROBABLY_BAD because raw temperature spikes 02:58:14 04 Mar 2017 UTC: INFO: QC.py(408): Changed (11/645) 213 216 219 222 223 228 231 249 252 254 264 to QC_PROBABLY_BAD because raw conductivity spikes 02:58:14 04 Mar 2017 UTC: INFO: QC.py(180): Changed (13/645) 2 209 213 216 219 222 223 231 249 254 264 266 644 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:58:14 04 Mar 2017 UTC: INFO: QC.py(180): Changed (2/645) 228 252 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 02:58:14 04 Mar 2017 UTC: INFO: QC.py(180): Changed (1/645) 644 to QC_BAD because changed raw cond implies changed raw salinity 02:58:14 04 Mar 2017 UTC: INFO: QC.py(365): Changed (13/645) 2 209 213 216 219 222 223 231 249 254 264 266 644 to QC_INTERPOLATED because temperature spikes 02:58:14 04 Mar 2017 UTC: INFO: QC.py(408): Changed (11/645) 213 216 219 222 223 228 231 249 252 254 264 to QC_INTERPOLATED because conductivity spikes 02:58:14 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/645) 240:244 to QC_BAD because slow apogee CT flow 02:58:14 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/645) 1:6 to QC_BAD because prior to dive start 02:58:14 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/645) 645 to QC_BAD because end of climb 02:58:14 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/645) 1:6 240:244 644 645 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:58:14 04 Mar 2017 UTC: INFO: QC.py(180): Changed (13/645) 1:6 240:244 644 645 to QC_BAD because changed corrected salin implies changed speed 02:58:15 04 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:58:15 04 Mar 2017 UTC: INFO: QC.py(180): Changed (11/645) 209 213 216 219 222 223 231 249 254 264 266 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 02:58:15 04 Mar 2017 UTC: INFO: QC.py(180): Changed (2/645) 228 252 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 02:58:15 04 Mar 2017 UTC: INFO: QC.py(180): Changed (11/645) 209 213 216 219 222 223 231 249 254 264 266 to QC_INTERPOLATED because changed corrected temp implies changed speed 02:58:15 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.72 cm/s 02:58:15 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.16 cm/s 02:58:15 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:58:15 04 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (185/645) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:58:15 04 Mar 2017 UTC: INFO: QC.py(180): Changed (5/645) 2 216 231 266 644 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:58:15 04 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (185/645) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 02:58:15 04 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/645) 9 to QC_BAD because bad aa4330 oyxgen 02:58:15 04 Mar 2017 UTC: INFO: QC.py(180): Changed (5/645) 2 216 231 266 644 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:58:15 04 Mar 2017 UTC: INFO: QC.py(180): Changed (13/645) 1:6 240:244 644 645 to QC_BAD because changed salinity implies changed optode oxygen 02:58:15 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:58:15 04 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:58:15 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 02:58:16 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 314: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.02% reduction 02:58:16 04 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.314 02:58:16 04 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:58:16 04 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:58:16 04 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:58:16 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 02:58:16 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 03:00:47 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 03:00:48 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 03:00:48 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 03:01:17 04 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:01:17 04 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:01:17 04 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:01:17 04 Mar 2017 UTC /home/sg626/p6260314.log /home/sg626/p6260314.eng /home/sg626/p6260314.asc /home/sg626/p6260314.pro /home/sg626/p6260314.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 03:01:17 04 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:01:17 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:01:17 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:01:17 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:01:17 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:01:17 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:01:17 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:01:17 04 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:01:17 04 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:01:17 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:01:17 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:01:17 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:01:17 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:01:17 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:01:17 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:01:17 04 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:01:17 04 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:01:17 04 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:01:17 04 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:01:17 04 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:01:17 04 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:01:17 04 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:01:17 04 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:01:17 04 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 03:01:17 04 Mar 2017 UTC 06:29:08 04 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 30388 06:29:08 04 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:32:00 04 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 30594 06:32:00 04 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:32:00 04 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 06:32:00 04 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 06:32:00 04 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:32:00 04 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170303203159 ] 06:32:00 04 Mar 2017 UTC: INFO: Base.py(1333): PID:30602 06:32:00 04 Mar 2017 UTC: INFO: Base.py(1375): Started processing 06:32:00 04 Mar 2017 UTC 06:32:00 04 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 06:32:01 04 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 06:32:01 04 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:32:01 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:32:01 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:315 calls_made:1 call_cycle:0 06:32:01 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:32:01 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:315 calls_made:1 call_cycle:0 06:32:01 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:32:01 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:315 calls_made:1 call_cycle:0 06:32:01 04 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:315 calls_made:1 call_cycle:0 2250.2290 -15723.9540 03/04/17 06:27:00 UTC) to sdrifter@soest.hawaii.edu 06:32:01 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:315 calls_made:1 call_cycle:0 06:32:01 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:32:01 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:315 calls_made:1 call_cycle:0 06:32:01 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:32:01 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:315 calls_made:1 call_cycle:0 06:32:01 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:32:01 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:315 calls_made:1 call_cycle:0 06:32:01 04 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:32:01 04 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:32:06 04 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:32:07 04 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:32:07 04 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 06:32:07 04 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:32:07 04 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:32:07 04 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 06:32:09 04 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0315lz 06:32:09 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0315lz.x00 06:32:09 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0315lz.x01 06:32:09 04 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0315lz.r in process_file_group 06:32:09 04 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260315.log 06:32:09 04 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 06:32:09 04 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0315dz 06:32:09 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0315dz.x00 06:32:09 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0315dz.x01 06:32:09 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0315dz.x02 06:32:09 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0315dz.x03 06:32:09 04 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0315dz.r in process_file_group 06:32:09 04 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [315] 06:32:09 04 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [315] 06:32:09 04 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260315) for profiles 06:32:09 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 06:32:09 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/601) 600 601 to QC_BAD because CT out of water 06:32:09 04 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.054m) 06:32:09 04 Mar 2017 UTC: INFO: QC.py(365): Changed (10/601) 3:5 230 235 248 264 268 269 600 to QC_PROBABLY_BAD because raw temperature spikes 06:32:09 04 Mar 2017 UTC: INFO: QC.py(408): Changed (6/601) 230 235 248 264 268 269 to QC_PROBABLY_BAD because raw conductivity spikes 06:32:09 04 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <212 pt uncorrectable 903.3m SUSPECT weak conductivity anomaly n:-0.30 p:0.29> 06:32:09 04 Mar 2017 UTC: INFO: QC.py(180): Changed (10/601) 3:5 230 235 248 264 268 269 600 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 06:32:09 04 Mar 2017 UTC: INFO: QC.py(180): Changed (2/601) 600 601 to QC_BAD because changed raw cond implies changed raw salinity 06:32:09 04 Mar 2017 UTC: INFO: QC.py(365): Changed (10/601) 3:5 230 235 248 264 268 269 600 to QC_INTERPOLATED because temperature spikes 06:32:09 04 Mar 2017 UTC: INFO: QC.py(408): Changed (6/601) 230 235 248 264 268 269 to QC_INTERPOLATED because conductivity spikes 06:32:09 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/601) 241:245 to QC_BAD because slow apogee CT flow 06:32:09 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/601) 1:6 to QC_BAD because prior to dive start 06:32:09 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/601) 1:6 241:245 600 601 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 06:32:09 04 Mar 2017 UTC: INFO: QC.py(180): Changed (13/601) 1:6 241:245 600 601 to QC_BAD because changed corrected salin implies changed speed 06:32:10 04 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 06:32:10 04 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 315 interp_salinity data_points in_between 369 380 % suspect thermal-inertia points 370 06:32:10 04 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 315 interp_salinity data_points in_between 382 389 % suspect thermal-inertia points 386 06:32:10 04 Mar 2017 UTC: INFO: QC.py(180): Changed (6/601) 230 235 248 264 268 269 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 06:32:10 04 Mar 2017 UTC: INFO: QC.py(180): Changed (6/601) 230 235 248 264 268 269 to QC_INTERPOLATED because changed corrected temp implies changed speed 06:32:10 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.96 cm/s 06:32:10 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.44 cm/s 06:32:10 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 06:32:10 04 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (188/601) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 06:32:10 04 Mar 2017 UTC: INFO: QC.py(180): Changed (4/601) 3:5 600 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 06:32:10 04 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (188/601) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 06:32:10 04 Mar 2017 UTC: INFO: QC.py(180): Changed (4/601) 3:5 600 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 06:32:10 04 Mar 2017 UTC: INFO: QC.py(180): Changed (13/601) 1:6 241:245 600 601 to QC_BAD because changed salinity implies changed optode oxygen 06:32:10 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 06:32:10 04 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 06:32:10 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 06:32:10 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 315: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.16% reduction 06:32:10 04 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.315 06:32:10 04 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:32:10 04 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:32:10 04 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:32:11 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 06:32:11 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 06:34:43 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 06:34:44 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 06:34:44 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 06:35:13 04 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:35:13 04 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:35:13 04 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 06:35:13 04 Mar 2017 UTC /home/sg626/p6260315.log /home/sg626/p6260315.eng /home/sg626/p6260315.asc /home/sg626/p6260315.pro /home/sg626/p6260315.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 06:35:13 04 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:35:13 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:35:13 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:35:13 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:35:13 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:35:13 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:35:13 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:35:13 04 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:35:13 04 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:35:13 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:35:13 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:35:13 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:35:13 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:35:13 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:35:13 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:35:13 04 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:35:13 04 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 06:35:13 04 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 06:35:13 04 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 06:35:13 04 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 06:35:13 04 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:35:13 04 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:35:13 04 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:35:13 04 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 06:35:13 04 Mar 2017 UTC 10:08:34 04 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 4291 10:08:34 04 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:11:29 04 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 4492 10:11:29 04 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:11:29 04 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:11:29 04 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:11:29 04 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:11:29 04 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170304001128 ] 10:11:29 04 Mar 2017 UTC: INFO: Base.py(1333): PID:4500 10:11:29 04 Mar 2017 UTC: INFO: Base.py(1375): Started processing 10:11:29 04 Mar 2017 UTC 10:11:29 04 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:11:30 04 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:11:30 04 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:11:30 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:11:30 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:316 calls_made:1 call_cycle:0 10:11:30 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:11:30 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:316 calls_made:1 call_cycle:0 10:11:30 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:11:30 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:316 calls_made:1 call_cycle:0 10:11:30 04 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:316 calls_made:1 call_cycle:0 2250.5660 -15725.1380 03/04/17 10:06:25 UTC) to sdrifter@soest.hawaii.edu 10:11:30 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:316 calls_made:1 call_cycle:0 10:11:30 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:11:30 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:316 calls_made:1 call_cycle:0 10:11:30 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:11:30 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:316 calls_made:1 call_cycle:0 10:11:30 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:11:30 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:316 calls_made:1 call_cycle:0 10:11:30 04 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:11:30 04 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:11:35 04 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:11:36 04 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:11:36 04 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:11:36 04 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:11:36 04 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:11:36 04 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:11:38 04 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0316lz 10:11:38 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0316lz.x00 10:11:38 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0316lz.x01 10:11:38 04 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0316lz.r in process_file_group 10:11:38 04 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260316.log 10:11:38 04 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:11:38 04 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0316dz 10:11:38 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0316dz.x00 10:11:38 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0316dz.x01 10:11:38 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0316dz.x02 10:11:38 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0316dz.x03 10:11:38 04 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0316dz.r in process_file_group 10:11:38 04 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [316] 10:11:38 04 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [316] 10:11:38 04 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260316) for profiles 10:11:38 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 10:11:38 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/664) 663 664 to QC_BAD because CT out of water 10:11:38 04 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.036m) 10:11:38 04 Mar 2017 UTC: INFO: QC.py(365): Changed (4/664) 3 213 250 663 to QC_PROBABLY_BAD because raw temperature spikes 10:11:38 04 Mar 2017 UTC: INFO: QC.py(408): Changed (1/664) 213 to QC_PROBABLY_BAD because raw conductivity spikes 10:11:38 04 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(963): Restarting anomaly after 24.92m: -0.2594 at 258.08m (135) 10:11:38 04 Mar 2017 UTC: INFO: QC.py(180): Changed (4/664) 3 213 250 663 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 10:11:38 04 Mar 2017 UTC: INFO: QC.py(180): Changed (2/664) 663 664 to QC_BAD because changed raw cond implies changed raw salinity 10:11:38 04 Mar 2017 UTC: INFO: QC.py(365): Changed (4/664) 3 213 250 663 to QC_INTERPOLATED because temperature spikes 10:11:38 04 Mar 2017 UTC: INFO: QC.py(408): Changed (1/664) 213 to QC_INTERPOLATED because conductivity spikes 10:11:38 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/664) 232:236 to QC_BAD because slow apogee CT flow 10:11:38 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/664) 1:6 to QC_BAD because prior to dive start 10:11:38 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/664) 1:6 232:236 663 664 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:11:38 04 Mar 2017 UTC: INFO: QC.py(180): Changed (13/664) 1:6 232:236 663 664 to QC_BAD because changed corrected salin implies changed speed 10:11:39 04 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 10:11:39 04 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 316 interp_salinity data_points in_between 318 355 % suspect thermal-inertia points 329 330 10:11:39 04 Mar 2017 UTC: INFO: QC.py(180): Changed (2/664) 213 250 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 10:11:39 04 Mar 2017 UTC: INFO: QC.py(180): Changed (2/664) 213 250 to QC_INTERPOLATED because changed corrected temp implies changed speed 10:11:39 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.33 cm/s 10:11:39 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.07 cm/s 10:11:39 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:11:39 04 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (185/664) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:11:39 04 Mar 2017 UTC: INFO: QC.py(180): Changed (2/664) 3 663 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 10:11:39 04 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (185/664) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 10:11:39 04 Mar 2017 UTC: INFO: QC.py(180): Changed (2/664) 3 663 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 10:11:39 04 Mar 2017 UTC: INFO: QC.py(180): Changed (13/664) 1:6 232:236 663 664 to QC_BAD because changed salinity implies changed optode oxygen 10:11:39 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:11:39 04 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:11:39 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 10:11:40 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 316: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.96% reduction 10:11:40 04 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.316 10:11:40 04 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:11:40 04 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:11:40 04 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:11:40 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 10:11:40 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 10:14:11 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 10:14:12 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 10:14:12 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 10:14:41 04 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:14:41 04 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:14:41 04 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 10:14:41 04 Mar 2017 UTC /home/sg626/p6260316.log /home/sg626/p6260316.eng /home/sg626/p6260316.asc /home/sg626/p6260316.pro /home/sg626/p6260316.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 10:14:41 04 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:14:41 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:14:41 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:14:41 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:14:41 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:14:41 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:14:41 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:14:41 04 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:14:41 04 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:14:41 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:14:41 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:14:41 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:14:41 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:14:41 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:14:41 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:14:41 04 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:14:41 04 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:14:41 04 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:14:41 04 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:14:41 04 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:14:41 04 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:14:41 04 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:14:41 04 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:14:41 04 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 10:14:41 04 Mar 2017 UTC 13:39:38 04 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9976 13:39:38 04 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:42:24 04 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 10247 13:42:24 04 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:42:24 04 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:42:24 04 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:42:24 04 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:42:24 04 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170304034224 ] 13:42:24 04 Mar 2017 UTC: INFO: Base.py(1333): PID:10255 13:42:24 04 Mar 2017 UTC: INFO: Base.py(1375): Started processing 13:42:24 04 Mar 2017 UTC 13:42:24 04 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:42:25 04 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:42:25 04 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:42:25 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:42:25 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:317 calls_made:1 call_cycle:0 13:42:25 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:42:25 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:317 calls_made:1 call_cycle:0 13:42:25 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:42:25 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:317 calls_made:1 call_cycle:0 13:42:25 04 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:317 calls_made:1 call_cycle:0 2250.0820 -15726.0600 03/04/17 13:37:30 UTC) to sdrifter@soest.hawaii.edu 13:42:25 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:317 calls_made:1 call_cycle:0 13:42:25 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:42:25 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:317 calls_made:1 call_cycle:0 13:42:25 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:42:25 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:317 calls_made:1 call_cycle:0 13:42:25 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:42:25 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:317 calls_made:1 call_cycle:0 13:42:25 04 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:42:25 04 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:42:30 04 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:42:31 04 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:42:31 04 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:42:31 04 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:42:31 04 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:42:31 04 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:42:33 04 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0317lz 13:42:33 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0317lz.x00 13:42:33 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0317lz.x01 13:42:33 04 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0317lz.r in process_file_group 13:42:33 04 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260317.log 13:42:33 04 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:42:33 04 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0317dz 13:42:33 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0317dz.x00 13:42:33 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0317dz.x01 13:42:33 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0317dz.x02 13:42:33 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0317dz.x03 13:42:33 04 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0317dz.r in process_file_group 13:42:33 04 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [317] 13:42:33 04 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [317] 13:42:33 04 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260317) for profiles 13:42:33 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:42:33 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/619) 617 619 to QC_BAD because CT out of water 13:42:33 04 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.088m) 13:42:33 04 Mar 2017 UTC: INFO: QC.py(365): Changed (8/619) 240 249 250 258 266 267 276 618 to QC_PROBABLY_BAD because raw temperature spikes 13:42:33 04 Mar 2017 UTC: INFO: QC.py(377): Changed (1/619) 619 to QC_BAD because raw salinity below bound 13:42:34 04 Mar 2017 UTC: INFO: QC.py(408): Changed (9/619) 199 200 240 249 250 258 266 267 276 to QC_PROBABLY_BAD because raw conductivity spikes 13:42:34 04 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <227 pt uncorrectable 990.5m SUSPECT weak conductivity anomaly n:-0.27 p:0.27> 13:42:34 04 Mar 2017 UTC: INFO: QC.py(180): Changed (8/619) 240 249 250 258 266 267 276 618 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:42:34 04 Mar 2017 UTC: INFO: QC.py(180): Changed (2/619) 199 200 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 13:42:34 04 Mar 2017 UTC: INFO: QC.py(180): Changed (1/619) 617 to QC_BAD because changed raw cond implies changed raw salinity 13:42:34 04 Mar 2017 UTC: INFO: QC.py(365): Changed (8/619) 240 249 250 258 266 267 276 618 to QC_INTERPOLATED because temperature spikes 13:42:34 04 Mar 2017 UTC: INFO: QC.py(377): Changed (1/619) 619 to QC_BAD because salinity below bound 13:42:34 04 Mar 2017 UTC: INFO: QC.py(408): Changed (9/619) 199 200 240 249 250 258 266 267 276 to QC_INTERPOLATED because conductivity spikes 13:42:34 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/619) 249:253 to QC_BAD because slow apogee CT flow 13:42:34 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/619) 1:6 to QC_BAD because prior to dive start 13:42:34 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/619) 618 to QC_BAD because end of climb 13:42:34 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/619) 1:6 249:253 617:619 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:42:34 04 Mar 2017 UTC: INFO: QC.py(180): Changed (14/619) 1:6 249:253 617:619 to QC_BAD because changed corrected salin implies changed speed 13:42:34 04 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:42:34 04 Mar 2017 UTC: INFO: QC.py(180): Changed (5/619) 240 258 266 267 276 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 13:42:34 04 Mar 2017 UTC: INFO: QC.py(180): Changed (2/619) 199 200 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 13:42:34 04 Mar 2017 UTC: INFO: QC.py(180): Changed (5/619) 240 258 266 267 276 to QC_INTERPOLATED because changed corrected temp implies changed speed 13:42:34 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.95 cm/s 13:42:34 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.96 cm/s 13:42:34 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:42:34 04 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (183/619) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:42:34 04 Mar 2017 UTC: INFO: QC.py(180): Changed (3/619) 266 276 618 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:42:34 04 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (183/619) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:42:34 04 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/619) 3 to QC_BAD because bad aa4330 oyxgen 13:42:34 04 Mar 2017 UTC: INFO: QC.py(180): Changed (3/619) 266 276 618 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:42:34 04 Mar 2017 UTC: INFO: QC.py(180): Changed (13/619) 1 2 4:6 249:253 617:619 to QC_BAD because changed salinity implies changed optode oxygen 13:42:34 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:42:34 04 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:42:34 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:42:35 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 317: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.26% reduction 13:42:35 04 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.317 13:42:35 04 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:42:35 04 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:42:35 04 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:42:35 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:42:35 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:45:09 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 13:45:11 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:45:11 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:45:40 04 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:45:40 04 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:45:40 04 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:45:40 04 Mar 2017 UTC /home/sg626/p6260317.log /home/sg626/p6260317.eng /home/sg626/p6260317.asc /home/sg626/p6260317.pro /home/sg626/p6260317.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:45:40 04 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:45:40 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:45:40 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:45:40 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:45:40 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:45:40 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:45:40 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:45:40 04 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:45:40 04 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:45:40 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:45:40 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:45:40 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:45:40 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:45:40 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:45:40 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:45:40 04 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:45:40 04 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:45:40 04 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:45:40 04 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:45:40 04 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:45:40 04 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:45:40 04 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:45:40 04 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:45:40 04 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 13:45:40 04 Mar 2017 UTC 17:04:37 04 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 15883 17:04:37 04 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:07:26 04 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 16003 17:07:26 04 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:07:26 04 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:07:26 04 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:07:26 04 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:07:26 04 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170304070726 ] 17:07:26 04 Mar 2017 UTC: INFO: Base.py(1333): PID:16011 17:07:26 04 Mar 2017 UTC: INFO: Base.py(1375): Started processing 17:07:26 04 Mar 2017 UTC 17:07:26 04 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:07:27 04 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:07:27 04 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:07:27 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:07:27 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:318 calls_made:1 call_cycle:0 17:07:27 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:07:27 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:318 calls_made:1 call_cycle:0 17:07:27 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:07:27 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:318 calls_made:1 call_cycle:0 17:07:27 04 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:318 calls_made:1 call_cycle:0 2250.1940 -15726.3850 03/04/17 17:02:31 UTC) to sdrifter@soest.hawaii.edu 17:07:27 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:318 calls_made:1 call_cycle:0 17:07:27 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:07:27 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:318 calls_made:1 call_cycle:0 17:07:27 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:07:27 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:318 calls_made:1 call_cycle:0 17:07:27 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:07:27 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:318 calls_made:1 call_cycle:0 17:07:27 04 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:07:27 04 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:07:32 04 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:07:33 04 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:07:33 04 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:07:33 04 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:07:33 04 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:07:33 04 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:07:35 04 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0318lz 17:07:35 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0318lz.x00 17:07:35 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0318lz.x01 17:07:35 04 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0318lz.r in process_file_group 17:07:35 04 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260318.log 17:07:35 04 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:07:35 04 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0318dz 17:07:35 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0318dz.x00 17:07:35 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0318dz.x01 17:07:35 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0318dz.x02 17:07:35 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0318dz.x03 17:07:35 04 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0318dz.r in process_file_group 17:07:35 04 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [318] 17:07:35 04 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [318] 17:07:35 04 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260318) for profiles 17:07:35 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:07:35 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/578) 577 578 to QC_BAD because CT out of water 17:07:35 04 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.079m) 17:07:35 04 Mar 2017 UTC: INFO: QC.py(365): Changed (11/578) 2 200 201 206 231 259 260 263 276 277 577 to QC_PROBABLY_BAD because raw temperature spikes 17:07:35 04 Mar 2017 UTC: INFO: QC.py(377): Changed (1/578) 577 to QC_BAD because raw salinity below bound 17:07:35 04 Mar 2017 UTC: INFO: QC.py(408): Changed (9/578) 200 201 206 231 259 260 263 276 277 to QC_PROBABLY_BAD because raw conductivity spikes 17:07:35 04 Mar 2017 UTC: INFO: QC.py(180): Changed (10/578) 2 200 201 206 231 259 260 263 276 277 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:07:35 04 Mar 2017 UTC: INFO: QC.py(180): Changed (1/578) 578 to QC_BAD because changed raw cond implies changed raw salinity 17:07:35 04 Mar 2017 UTC: INFO: QC.py(365): Changed (11/578) 2 200 201 206 231 259 260 263 276 277 577 to QC_INTERPOLATED because temperature spikes 17:07:35 04 Mar 2017 UTC: INFO: QC.py(377): Changed (1/578) 577 to QC_BAD because salinity below bound 17:07:35 04 Mar 2017 UTC: INFO: QC.py(408): Changed (9/578) 200 201 206 231 259 260 263 276 277 to QC_INTERPOLATED because conductivity spikes 17:07:35 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/578) 234:238 to QC_BAD because slow apogee CT flow 17:07:35 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/578) 1:6 to QC_BAD because prior to dive start 17:07:35 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/578) 1:6 234:238 577 578 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:07:35 04 Mar 2017 UTC: INFO: QC.py(180): Changed (13/578) 1:6 234:238 577 578 to QC_BAD because changed corrected salin implies changed speed 17:07:36 04 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:07:36 04 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 318 interp_salinity data_points in_between 320 364 % suspect thermal-inertia points 331 342 343 17:07:36 04 Mar 2017 UTC: INFO: QC.py(180): Changed (9/578) 200 201 206 231 259 260 263 276 277 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 17:07:36 04 Mar 2017 UTC: INFO: QC.py(180): Changed (9/578) 200 201 206 231 259 260 263 276 277 to QC_INTERPOLATED because changed corrected temp implies changed speed 17:07:36 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.20 cm/s 17:07:36 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.27 cm/s 17:07:36 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:07:36 04 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (184/578) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:07:36 04 Mar 2017 UTC: INFO: QC.py(180): Changed (6/578) 2 201 206 231 276 577 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:07:36 04 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (184/578) 127:130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:07:36 04 Mar 2017 UTC: INFO: QC.py(180): Changed (6/578) 2 201 206 231 276 577 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:07:36 04 Mar 2017 UTC: INFO: QC.py(180): Changed (13/578) 1:6 234:238 577 578 to QC_BAD because changed salinity implies changed optode oxygen 17:07:36 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:07:36 04 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:07:36 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:07:36 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 318: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.25% reduction 17:07:37 04 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.318 17:07:37 04 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:07:37 04 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:07:37 04 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:07:37 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:07:37 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:10:11 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 17:10:12 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:10:12 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:10:42 04 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:10:42 04 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:10:42 04 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:10:42 04 Mar 2017 UTC /home/sg626/p6260318.log /home/sg626/p6260318.eng /home/sg626/p6260318.asc /home/sg626/p6260318.pro /home/sg626/p6260318.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:10:42 04 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:10:42 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:10:42 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:10:42 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:10:42 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:10:42 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:10:42 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:10:42 04 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:10:42 04 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:10:42 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:10:42 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:10:42 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:10:42 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:10:42 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:10:42 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:10:42 04 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:10:42 04 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:10:42 04 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:10:42 04 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:10:42 04 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:10:42 04 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:10:42 04 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:10:42 04 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:10:42 04 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 17:10:42 04 Mar 2017 UTC 20:31:19 04 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 21644 20:31:19 04 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:31:47 04 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 21727 20:31:47 04 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:31:47 04 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:31:47 04 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:31:47 04 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:31:47 04 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170304103146 ] 20:31:47 04 Mar 2017 UTC: INFO: Base.py(1333): PID:21734 20:31:47 04 Mar 2017 UTC: INFO: Base.py(1375): Started processing 20:31:47 04 Mar 2017 UTC 20:31:47 04 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:31:48 04 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:31:48 04 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:31:48 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:31:48 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 20:31:48 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:31:48 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 20:31:48 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:31:48 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 20:31:48 04 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (No GPS fix available for this call) to sdrifter@soest.hawaii.edu 20:31:48 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 20:31:48 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:31:48 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 20:31:48 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:31:48 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 20:31:48 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:31:48 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 20:31:48 04 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:31:48 04 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:31:53 04 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:31:54 04 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:31:54 04 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:31:54 04 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:31:54 04 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:31:54 04 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:31:55 04 Mar 2017 UTC: WARNING: Base.py(1624): No dives to process 20:31:55 04 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [] 20:31:55 04 Mar 2017 UTC: INFO: Base.py(1780): No dives found to profile 20:31:55 04 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.318 20:31:55 04 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:31:55 04 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:31:55 04 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:31:55 04 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:31:55 04 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:31:55 04 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:31:55 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:31:55 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:31:55 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:31:55 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:31:55 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:31:55 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:31:55 04 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:31:55 04 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:31:55 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:31:55 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:31:55 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:31:55 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:31:55 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:31:55 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:31:55 04 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:31:55 04 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:31:55 04 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:31:55 04 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:31:55 04 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:31:55 04 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:31:55 04 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:31:55 04 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:31:55 04 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 20:31:55 04 Mar 2017 UTC 20:34:07 04 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 21905 20:34:07 04 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:36:51 04 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 22033 20:36:51 04 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:36:51 04 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:36:51 04 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:36:51 04 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:36:51 04 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170304103650 ] 20:36:51 04 Mar 2017 UTC: INFO: Base.py(1333): PID:22041 20:36:51 04 Mar 2017 UTC: INFO: Base.py(1375): Started processing 20:36:51 04 Mar 2017 UTC 20:36:51 04 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:36:52 04 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:36:52 04 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:36:52 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:36:52 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:319 calls_made:2 call_cycle:0 20:36:52 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:36:52 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:319 calls_made:2 call_cycle:0 20:36:52 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:36:52 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:319 calls_made:2 call_cycle:0 20:36:52 04 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:319 calls_made:2 call_cycle:0 2250.5470 -15727.3460 03/04/17 20:28:50 UTC) to sdrifter@soest.hawaii.edu 20:36:52 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:319 calls_made:2 call_cycle:0 20:36:52 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:36:52 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:319 calls_made:2 call_cycle:0 20:36:52 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:36:52 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:319 calls_made:2 call_cycle:0 20:36:52 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:36:52 04 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:319 calls_made:2 call_cycle:0 20:36:52 04 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:36:52 04 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:36:57 04 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:36:58 04 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:36:58 04 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:36:58 04 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:36:58 04 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:36:58 04 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:36:59 04 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0319lz 20:36:59 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0319lz.x00 20:36:59 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0319lz.x01 20:36:59 04 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0319lz.r in process_file_group 20:36:59 04 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260319.log 20:36:59 04 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:36:59 04 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0319dz 20:36:59 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0319dz.x00 20:36:59 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0319dz.x01 20:36:59 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0319dz.x02 20:36:59 04 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0319dz.x03 20:36:59 04 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0319dz.r in process_file_group 20:37:00 04 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [319] 20:37:00 04 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [319] 20:37:00 04 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260319) for profiles 20:37:00 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 20:37:00 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/599) 599 to QC_BAD because CT out of water 20:37:00 04 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.061m) 20:37:00 04 Mar 2017 UTC: INFO: QC.py(365): Changed (16/599) 2 204:207 224:226 231 234 236 240 242 244 248 598 to QC_PROBABLY_BAD because raw temperature spikes 20:37:00 04 Mar 2017 UTC: INFO: QC.py(377): Changed (1/599) 599 to QC_BAD because raw salinity below bound 20:37:00 04 Mar 2017 UTC: INFO: QC.py(408): Changed (13/599) 204:207 224 225 234 236 239 240 242 244 248 to QC_PROBABLY_BAD because raw conductivity spikes 20:37:00 04 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(963): Restarting anomaly after 22.29m: -0.2999 at 276.80m (142) 20:37:00 04 Mar 2017 UTC: INFO: QC.py(180): Changed (16/599) 2 204:207 224:226 231 234 236 240 242 244 248 598 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 20:37:00 04 Mar 2017 UTC: INFO: QC.py(180): Changed (1/599) 239 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 20:37:00 04 Mar 2017 UTC: INFO: QC.py(365): Changed (16/599) 2 204:207 224:226 231 234 236 240 242 244 248 598 to QC_INTERPOLATED because temperature spikes 20:37:00 04 Mar 2017 UTC: INFO: QC.py(377): Changed (1/599) 599 to QC_BAD because salinity below bound 20:37:00 04 Mar 2017 UTC: INFO: QC.py(408): Changed (13/599) 204:207 224 225 234 236 239 240 242 244 248 to QC_INTERPOLATED because conductivity spikes 20:37:00 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/599) 237:241 to QC_BAD because slow apogee CT flow 20:37:00 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/599) 1:6 to QC_BAD because prior to dive start 20:37:00 04 Mar 2017 UTC: INFO: QC.py(488): Changed (1/599) 236 to QC_PROBABLY_BAD because bad interpolation anchors 20:37:00 04 Mar 2017 UTC: INFO: QC.py(489): SUGGESTION: 319 bad_conductivity data_points in_between 234 236 % bad interpolation anchors 20:37:00 04 Mar 2017 UTC: INFO: QC.py(488): Changed (1/599) 242 to QC_PROBABLY_BAD because bad interpolation anchors 20:37:00 04 Mar 2017 UTC: INFO: QC.py(489): SUGGESTION: 319 bad_conductivity data_points in_between 240 242 % bad interpolation anchors 20:37:00 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/599) 1:6 237:241 599 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 20:37:00 04 Mar 2017 UTC: INFO: QC.py(180): Changed (12/599) 1:6 237:241 599 to QC_BAD because changed corrected salin implies changed speed 20:37:00 04 Mar 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 598 20:37:01 04 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 20:37:01 04 Mar 2017 UTC: INFO: QC.py(180): Changed (14/599) 204:207 224:226 231 234 236 242 244 248 598 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 20:37:01 04 Mar 2017 UTC: INFO: QC.py(180): Changed (2/599) 236 242 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 20:37:01 04 Mar 2017 UTC: INFO: QC.py(180): Changed (14/599) 204:207 224:226 231 234 236 242 244 248 598 to QC_INTERPOLATED because changed corrected temp implies changed speed 20:37:01 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.63 cm/s 20:37:01 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.17 cm/s 20:37:01 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 20:37:01 04 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (180/599) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 20:37:01 04 Mar 2017 UTC: INFO: QC.py(180): Changed (6/599) 2 206 226 231 236 598 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 20:37:01 04 Mar 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/599) 598 to QC_BAD because slow flow in SBE43 20:37:01 04 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (180/599) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 20:37:01 04 Mar 2017 UTC: INFO: QC.py(180): Changed (6/599) 2 206 226 231 236 598 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 20:37:01 04 Mar 2017 UTC: INFO: QC.py(180): Changed (1/599) 236 to QC_PROBABLY_BAD because changed salinity implies changed optode oxygen 20:37:01 04 Mar 2017 UTC: INFO: QC.py(180): Changed (12/599) 1:6 237:241 599 to QC_BAD because changed salinity implies changed optode oxygen 20:37:01 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 20:37:01 04 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 20:37:01 04 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 20:37:01 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 319: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.00% reduction 20:37:01 04 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.319 20:37:01 04 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:37:01 04 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:37:01 04 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:37:01 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 20:37:01 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 20:39:38 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 20:39:39 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 20:39:39 04 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 20:40:08 04 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:40:08 04 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:40:08 04 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:40:08 04 Mar 2017 UTC /home/sg626/p6260319.log /home/sg626/p6260319.eng /home/sg626/p6260319.asc /home/sg626/p6260319.pro /home/sg626/p6260319.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 20:40:08 04 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:40:08 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:40:08 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:40:08 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:40:08 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:40:08 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:40:08 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:40:08 04 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:40:08 04 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:40:08 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:40:08 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:40:08 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:40:08 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:40:08 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:40:08 04 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:40:08 04 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:40:08 04 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:40:08 04 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:40:08 04 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:40:08 04 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:40:08 04 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:40:08 04 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:40:08 04 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:40:08 04 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 20:40:08 04 Mar 2017 UTC 00:16:44 05 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 28035 00:16:44 05 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:19:43 05 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 28163 00:19:43 05 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:19:43 05 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:19:43 05 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:19:43 05 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:19:43 05 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170304141942 ] 00:19:43 05 Mar 2017 UTC: INFO: Base.py(1333): PID:28171 00:19:43 05 Mar 2017 UTC: INFO: Base.py(1375): Started processing 00:19:43 05 Mar 2017 UTC 00:19:43 05 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:19:44 05 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:19:44 05 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:19:44 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:19:44 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:320 calls_made:1 call_cycle:0 00:19:44 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:19:44 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:320 calls_made:1 call_cycle:0 00:19:44 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:19:44 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:320 calls_made:1 call_cycle:0 00:19:44 05 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:320 calls_made:1 call_cycle:0 2250.3710 -15728.1850 03/05/17 00:14:24 UTC) to sdrifter@soest.hawaii.edu 00:19:44 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:320 calls_made:1 call_cycle:0 00:19:44 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:19:44 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:320 calls_made:1 call_cycle:0 00:19:44 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:19:44 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:320 calls_made:1 call_cycle:0 00:19:44 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:19:44 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:320 calls_made:1 call_cycle:0 00:19:44 05 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:19:44 05 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:19:49 05 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:19:50 05 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:19:50 05 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:19:50 05 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:19:50 05 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:19:50 05 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:19:52 05 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0320lz 00:19:52 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0320lz.x00 00:19:52 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0320lz.x01 00:19:52 05 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0320lz.r in process_file_group 00:19:52 05 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260320.log 00:19:52 05 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:19:52 05 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0320dz 00:19:52 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0320dz.x00 00:19:52 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0320dz.x01 00:19:52 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0320dz.x02 00:19:52 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0320dz.x03 00:19:52 05 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0320dz.r in process_file_group 00:19:52 05 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [320] 00:19:52 05 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [320] 00:19:52 05 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260320) for profiles 00:19:52 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 00:19:52 05 Mar 2017 UTC: INFO: QC.py(365): Changed (11/654) 3 204 224 225 235 242 245 247 248 270 271 to QC_PROBABLY_BAD because raw temperature spikes 00:19:52 05 Mar 2017 UTC: INFO: QC.py(408): Changed (10/654) 204 224 225 235 242 245 247 248 270 271 to QC_PROBABLY_BAD because raw conductivity spikes 00:19:52 05 Mar 2017 UTC: INFO: QC.py(180): Changed (11/654) 3 204 224 225 235 242 245 247 248 270 271 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:19:52 05 Mar 2017 UTC: INFO: QC.py(365): Changed (11/654) 3 204 224 225 235 242 245 247 248 270 271 to QC_INTERPOLATED because temperature spikes 00:19:52 05 Mar 2017 UTC: INFO: QC.py(408): Changed (10/654) 204 224 225 235 242 245 247 248 270 271 to QC_INTERPOLATED because conductivity spikes 00:19:52 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/654) 240:244 to QC_BAD because slow apogee CT flow 00:19:52 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/654) 1:6 to QC_BAD because prior to dive start 00:19:52 05 Mar 2017 UTC: INFO: QC.py(488): Changed (1/654) 245 to QC_PROBABLY_BAD because bad interpolation anchors 00:19:52 05 Mar 2017 UTC: INFO: QC.py(489): SUGGESTION: 320 bad_conductivity data_points in_between 243 245 % bad interpolation anchors 00:19:52 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/654) 1:6 240:244 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:19:52 05 Mar 2017 UTC: INFO: QC.py(180): Changed (11/654) 1:6 240:244 to QC_BAD because changed corrected salin implies changed speed 00:19:53 05 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:19:53 05 Mar 2017 UTC: INFO: QC.py(180): Changed (9/654) 204 224 225 235 245 247 248 270 271 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 00:19:53 05 Mar 2017 UTC: INFO: QC.py(180): Changed (1/654) 245 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 00:19:53 05 Mar 2017 UTC: INFO: QC.py(180): Changed (9/654) 204 224 225 235 245 247 248 270 271 to QC_INTERPOLATED because changed corrected temp implies changed speed 00:19:53 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.92 cm/s 00:19:53 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.31 cm/s 00:19:53 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:19:53 05 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (193/654) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:19:53 05 Mar 2017 UTC: INFO: QC.py(180): Changed (2/654) 3 271 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:19:53 05 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (193/654) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 00:19:53 05 Mar 2017 UTC: INFO: QC.py(180): Changed (2/654) 3 271 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:19:53 05 Mar 2017 UTC: INFO: QC.py(180): Changed (11/654) 1:6 240:244 to QC_BAD because changed salinity implies changed optode oxygen 00:19:53 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:19:53 05 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:19:53 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 00:19:53 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 320: Data set size for profile, binned and kkyy files reduced by 11 points, a 1.68% reduction 00:19:54 05 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.320 00:19:54 05 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:19:54 05 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:19:54 05 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:19:54 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 00:19:54 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 00:22:28 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 00:22:29 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 00:22:29 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 00:22:58 05 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:22:58 05 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:22:58 05 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:22:58 05 Mar 2017 UTC /home/sg626/p6260320.log /home/sg626/p6260320.eng /home/sg626/p6260320.asc /home/sg626/p6260320.pro /home/sg626/p6260320.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 00:22:58 05 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:22:58 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:22:58 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:22:58 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:22:58 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:22:58 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:22:58 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:22:58 05 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:22:58 05 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:22:58 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:22:58 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:22:58 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:22:58 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:22:58 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:22:58 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:22:58 05 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:22:58 05 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:22:58 05 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:22:58 05 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:22:58 05 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:22:58 05 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:22:58 05 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:22:58 05 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:22:58 05 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 00:22:58 05 Mar 2017 UTC 03:53:48 05 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 1741 03:53:48 05 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:56:30 05 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 1876 03:56:30 05 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:56:30 05 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:56:30 05 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:56:30 05 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:56:30 05 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170304175629 ] 03:56:30 05 Mar 2017 UTC: INFO: Base.py(1333): PID:1883 03:56:30 05 Mar 2017 UTC: INFO: Base.py(1375): Started processing 03:56:30 05 Mar 2017 UTC 03:56:30 05 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:56:31 05 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:56:31 05 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:56:31 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:56:31 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:321 calls_made:2 call_cycle:0 03:56:31 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:56:31 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:321 calls_made:2 call_cycle:0 03:56:31 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:56:31 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:321 calls_made:2 call_cycle:0 03:56:31 05 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:321 calls_made:2 call_cycle:0 2249.4980 -15728.7880 03/05/17 03:49:23 UTC) to sdrifter@soest.hawaii.edu 03:56:31 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:321 calls_made:2 call_cycle:0 03:56:31 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:56:31 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:321 calls_made:2 call_cycle:0 03:56:31 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:56:31 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:321 calls_made:2 call_cycle:0 03:56:31 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:56:31 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:321 calls_made:2 call_cycle:0 03:56:31 05 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:56:31 05 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:56:36 05 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:56:37 05 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:56:37 05 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:56:37 05 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:56:37 05 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:56:37 05 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:56:39 05 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0321lz 03:56:39 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0321lz.x00 03:56:39 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0321lz.x01 03:56:39 05 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0321lz.r in process_file_group 03:56:39 05 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260321.log 03:56:39 05 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:56:39 05 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0321dz 03:56:39 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0321dz.x00 03:56:39 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0321dz.x01 03:56:39 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0321dz.x02 03:56:39 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0321dz.x03 03:56:39 05 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0321dz.r in process_file_group 03:56:39 05 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [321] 03:56:39 05 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [321] 03:56:39 05 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260321) for profiles 03:56:39 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 03:56:39 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/629) 628 629 to QC_BAD because CT out of water 03:56:39 05 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.143m) 03:56:39 05 Mar 2017 UTC: INFO: QC.py(365): Changed (8/629) 206 229 238 251 277 278 280 281 to QC_PROBABLY_BAD because raw temperature spikes 03:56:39 05 Mar 2017 UTC: INFO: QC.py(377): Changed (1/629) 629 to QC_BAD because raw salinity below bound 03:56:39 05 Mar 2017 UTC: INFO: QC.py(408): Changed (6/629) 238 251 277 278 280 281 to QC_PROBABLY_BAD because raw conductivity spikes 03:56:39 05 Mar 2017 UTC: INFO: QC.py(180): Changed (8/629) 206 229 238 251 277 278 280 281 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 03:56:39 05 Mar 2017 UTC: INFO: QC.py(180): Changed (1/629) 628 to QC_BAD because changed raw cond implies changed raw salinity 03:56:39 05 Mar 2017 UTC: INFO: QC.py(365): Changed (8/629) 206 229 238 251 277 278 280 281 to QC_INTERPOLATED because temperature spikes 03:56:39 05 Mar 2017 UTC: INFO: QC.py(377): Changed (1/629) 629 to QC_BAD because salinity below bound 03:56:39 05 Mar 2017 UTC: INFO: QC.py(408): Changed (6/629) 238 251 277 278 280 281 to QC_INTERPOLATED because conductivity spikes 03:56:39 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/629) 244:248 to QC_BAD because slow apogee CT flow 03:56:39 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/629) 1:7 to QC_BAD because prior to dive start 03:56:39 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/629) 627 to QC_BAD because end of climb 03:56:39 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/629) 1:7 244:248 627:629 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:56:39 05 Mar 2017 UTC: INFO: QC.py(180): Changed (15/629) 1:7 244:248 627:629 to QC_BAD because changed corrected salin implies changed speed 03:56:40 05 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 03:56:40 05 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 321 interp_salinity data_points in_between 316 370 % suspect thermal-inertia points 346 03:56:40 05 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 321 interp_salinity data_points in_between 385 391 % suspect thermal-inertia points 389 03:56:40 05 Mar 2017 UTC: INFO: QC.py(180): Changed (8/629) 206 229 238 251 277 278 280 281 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 03:56:40 05 Mar 2017 UTC: INFO: QC.py(180): Changed (8/629) 206 229 238 251 277 278 280 281 to QC_INTERPOLATED because changed corrected temp implies changed speed 03:56:40 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.93 cm/s 03:56:40 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.09 cm/s 03:56:40 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:56:40 05 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (188/629) 133:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:56:40 05 Mar 2017 UTC: INFO: QC.py(180): Changed (3/629) 206 251 281 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:56:40 05 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (188/629) 133:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 03:56:40 05 Mar 2017 UTC: INFO: QC.py(180): Changed (3/629) 206 251 281 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 03:56:40 05 Mar 2017 UTC: INFO: QC.py(180): Changed (15/629) 1:7 244:248 627:629 to QC_BAD because changed salinity implies changed optode oxygen 03:56:40 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:56:40 05 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:56:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 03:56:40 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 321: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.38% reduction 03:56:41 05 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.321 03:56:41 05 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:56:41 05 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:56:41 05 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:56:41 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 03:56:41 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 03:59:16 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 03:59:17 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 03:59:17 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 03:59:47 05 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:59:47 05 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:59:47 05 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:59:47 05 Mar 2017 UTC /home/sg626/p6260321.log /home/sg626/p6260321.eng /home/sg626/p6260321.asc /home/sg626/p6260321.pro /home/sg626/p6260321.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 03:59:47 05 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:59:47 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:59:47 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:59:47 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:59:47 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:59:47 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:59:47 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:59:47 05 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:59:47 05 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:59:47 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:59:47 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:59:47 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:59:47 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:59:47 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:59:47 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:59:47 05 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:59:47 05 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:59:47 05 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:59:47 05 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:59:47 05 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:59:47 05 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:59:47 05 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:59:47 05 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:59:47 05 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 03:59:47 05 Mar 2017 UTC 07:20:45 05 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 7686 07:20:45 05 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:23:30 05 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 7815 07:23:30 05 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:23:30 05 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:23:30 05 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:23:30 05 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:23:30 05 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170304212329 ] 07:23:30 05 Mar 2017 UTC: INFO: Base.py(1333): PID:7822 07:23:30 05 Mar 2017 UTC: INFO: Base.py(1375): Started processing 07:23:30 05 Mar 2017 UTC 07:23:30 05 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:23:31 05 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:23:31 05 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:23:31 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:23:31 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:322 calls_made:1 call_cycle:0 07:23:31 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:23:31 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:322 calls_made:1 call_cycle:0 07:23:31 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:23:31 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:322 calls_made:1 call_cycle:0 07:23:31 05 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:322 calls_made:1 call_cycle:0 2248.1680 -15729.9880 03/05/17 07:18:40 UTC) to sdrifter@soest.hawaii.edu 07:23:31 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:322 calls_made:1 call_cycle:0 07:23:31 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:23:31 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:322 calls_made:1 call_cycle:0 07:23:31 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:23:31 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:322 calls_made:1 call_cycle:0 07:23:31 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:23:31 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:322 calls_made:1 call_cycle:0 07:23:31 05 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:23:31 05 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:23:36 05 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:23:37 05 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:23:37 05 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:23:37 05 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:23:37 05 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:23:37 05 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:23:38 05 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0322lz 07:23:38 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0322lz.x00 07:23:38 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0322lz.x01 07:23:38 05 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0322lz.r in process_file_group 07:23:38 05 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260322.log 07:23:38 05 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:23:38 05 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0322dz 07:23:38 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0322dz.x00 07:23:38 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0322dz.x01 07:23:38 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0322dz.x02 07:23:38 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0322dz.x03 07:23:38 05 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0322dz.r in process_file_group 07:23:39 05 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [322] 07:23:39 05 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [322] 07:23:39 05 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260322) for profiles 07:23:39 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 07:23:39 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/582) 581 to QC_BAD because CT out of water 07:23:39 05 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.233m) 07:23:39 05 Mar 2017 UTC: INFO: QC.py(365): Changed (8/582) 2 3 224 233 239 260 262 288 to QC_PROBABLY_BAD because raw temperature spikes 07:23:39 05 Mar 2017 UTC: INFO: QC.py(377): Changed (1/582) 581 to QC_BAD because raw salinity below bound 07:23:39 05 Mar 2017 UTC: INFO: QC.py(408): Changed (7/582) 224 233 252 260 262 276 288 to QC_PROBABLY_BAD because raw conductivity spikes 07:23:39 05 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <231 pt uncorrectable 987.7m SUSPECT weak conductivity anomaly n:-0.55 p:0.53> 07:23:39 05 Mar 2017 UTC: INFO: QC.py(180): Changed (8/582) 2 3 224 233 239 260 262 288 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:23:39 05 Mar 2017 UTC: INFO: QC.py(180): Changed (2/582) 252 276 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 07:23:39 05 Mar 2017 UTC: INFO: QC.py(365): Changed (8/582) 2 3 224 233 239 260 262 288 to QC_INTERPOLATED because temperature spikes 07:23:39 05 Mar 2017 UTC: INFO: QC.py(377): Changed (1/582) 581 to QC_BAD because salinity below bound 07:23:39 05 Mar 2017 UTC: INFO: QC.py(408): Changed (7/582) 224 233 252 260 262 276 288 to QC_INTERPOLATED because conductivity spikes 07:23:39 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/582) 245:249 to QC_BAD because slow apogee CT flow 07:23:39 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/582) 1:6 to QC_BAD because prior to dive start 07:23:39 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/582) 580 582 to QC_BAD because end of climb 07:23:39 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/582) 1:6 245:249 580:582 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:23:39 05 Mar 2017 UTC: INFO: QC.py(180): Changed (14/582) 1:6 245:249 580:582 to QC_BAD because changed corrected salin implies changed speed 07:23:39 05 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:23:39 05 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 322 interp_salinity data_points in_between 322 367 % suspect thermal-inertia points 356 07:23:39 05 Mar 2017 UTC: INFO: QC.py(180): Changed (6/582) 224 233 239 260 262 288 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 07:23:39 05 Mar 2017 UTC: INFO: QC.py(180): Changed (2/582) 252 276 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 07:23:39 05 Mar 2017 UTC: INFO: QC.py(180): Changed (6/582) 224 233 239 260 262 288 to QC_INTERPOLATED because changed corrected temp implies changed speed 07:23:39 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.13 cm/s 07:23:39 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.03 cm/s 07:23:39 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:23:40 05 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (186/582) 134 135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:23:40 05 Mar 2017 UTC: INFO: QC.py(180): Changed (2/582) 2 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:23:40 05 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (186/582) 134 135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 07:23:40 05 Mar 2017 UTC: INFO: QC.py(180): Changed (2/582) 2 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:23:40 05 Mar 2017 UTC: INFO: QC.py(180): Changed (14/582) 1:6 245:249 580:582 to QC_BAD because changed salinity implies changed optode oxygen 07:23:40 05 Mar 2017 UTC: INFO: QC.py(180): Changed (1/582) 276 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 07:23:40 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:23:40 05 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:23:40 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 07:23:40 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 322: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.41% reduction 07:23:40 05 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.322 07:23:40 05 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:23:40 05 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:23:40 05 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:23:40 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 07:23:40 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:26:16 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 07:26:17 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:26:17 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:26:47 05 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:26:47 05 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:26:47 05 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:26:47 05 Mar 2017 UTC /home/sg626/p6260322.log /home/sg626/p6260322.eng /home/sg626/p6260322.asc /home/sg626/p6260322.pro /home/sg626/p6260322.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:26:47 05 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:26:47 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:26:47 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:26:47 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:26:47 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:26:47 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:26:47 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:26:47 05 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:26:47 05 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:26:47 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:26:47 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:26:47 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:26:47 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:26:47 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:26:47 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:26:47 05 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:26:47 05 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:26:47 05 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:26:47 05 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:26:47 05 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:26:47 05 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:26:47 05 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:26:47 05 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:26:47 05 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 07:26:47 05 Mar 2017 UTC 11:07:39 05 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 14013 11:07:39 05 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 11:10:33 05 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 14212 11:10:33 05 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:10:33 05 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 11:10:33 05 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 11:10:33 05 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:10:33 05 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170305011033 ] 11:10:33 05 Mar 2017 UTC: INFO: Base.py(1333): PID:14220 11:10:33 05 Mar 2017 UTC: INFO: Base.py(1375): Started processing 11:10:33 05 Mar 2017 UTC 11:10:33 05 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 11:10:34 05 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 11:10:34 05 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:10:34 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:10:34 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:323 calls_made:5 call_cycle:0 11:10:34 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:10:34 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:323 calls_made:5 call_cycle:0 11:10:34 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:10:34 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:323 calls_made:5 call_cycle:0 11:10:34 05 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:323 calls_made:5 call_cycle:0 2249.1250 -15730.4840 03/05/17 10:58:11 UTC) to sdrifter@soest.hawaii.edu 11:10:34 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:323 calls_made:5 call_cycle:0 11:10:34 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:10:34 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:323 calls_made:5 call_cycle:0 11:10:34 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:10:34 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:323 calls_made:5 call_cycle:0 11:10:34 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:10:34 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:323 calls_made:5 call_cycle:0 11:10:34 05 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:10:34 05 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:10:40 05 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:10:40 05 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:10:40 05 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 11:10:40 05 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:10:40 05 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:10:40 05 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 11:10:42 05 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0323lz 11:10:42 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0323lz.x00 11:10:42 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0323lz.x01 11:10:42 05 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0323lz.r in process_file_group 11:10:42 05 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260323.log 11:10:42 05 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 11:10:42 05 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0323dz 11:10:42 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0323dz.x00 11:10:42 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0323dz.x01 11:10:42 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0323dz.x02 11:10:42 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0323dz.x03 11:10:42 05 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0323dz.r in process_file_group 11:10:42 05 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [323] 11:10:42 05 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [323] 11:10:43 05 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260323) for profiles 11:10:43 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 11:10:43 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/659) 658 659 to QC_BAD because CT out of water 11:10:43 05 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.086m) 11:10:43 05 Mar 2017 UTC: INFO: QC.py(365): Changed (14/659) 2 198:201 212 213 237 238 240 248 254 277 278 to QC_PROBABLY_BAD because raw temperature spikes 11:10:43 05 Mar 2017 UTC: INFO: QC.py(377): Changed (1/659) 659 to QC_BAD because raw salinity below bound 11:10:43 05 Mar 2017 UTC: INFO: QC.py(408): Changed (12/659) 198:201 212 213 237 238 240 248 277 278 to QC_PROBABLY_BAD because raw conductivity spikes 11:10:43 05 Mar 2017 UTC: INFO: QC.py(180): Changed (14/659) 2 198:201 212 213 237 238 240 248 254 277 278 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 11:10:43 05 Mar 2017 UTC: INFO: QC.py(180): Changed (1/659) 658 to QC_BAD because changed raw cond implies changed raw salinity 11:10:43 05 Mar 2017 UTC: INFO: QC.py(365): Changed (14/659) 2 198:201 212 213 237 238 240 248 254 277 278 to QC_INTERPOLATED because temperature spikes 11:10:43 05 Mar 2017 UTC: INFO: QC.py(377): Changed (1/659) 659 to QC_BAD because salinity below bound 11:10:43 05 Mar 2017 UTC: INFO: QC.py(408): Changed (12/659) 198:201 212 213 237 238 240 248 277 278 to QC_INTERPOLATED because conductivity spikes 11:10:43 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/659) 243:247 to QC_BAD because slow apogee CT flow 11:10:43 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/659) 1:6 to QC_BAD because prior to dive start 11:10:43 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/659) 657 to QC_BAD because end of climb 11:10:43 05 Mar 2017 UTC: INFO: QC.py(488): Changed (1/659) 248 to QC_PROBABLY_BAD because bad interpolation anchors 11:10:43 05 Mar 2017 UTC: INFO: QC.py(489): SUGGESTION: 323 bad_conductivity data_points in_between 246 248 % bad interpolation anchors 11:10:43 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/659) 1:6 243:247 657:659 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 11:10:43 05 Mar 2017 UTC: INFO: QC.py(180): Changed (14/659) 1:6 243:247 657:659 to QC_BAD because changed corrected salin implies changed speed 11:10:43 05 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 11:10:43 05 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 323 interp_salinity data_points in_between 389 402 % suspect thermal-inertia points 393 394 11:10:43 05 Mar 2017 UTC: INFO: QC.py(180): Changed (13/659) 198:201 212 213 237 238 240 248 254 277 278 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 11:10:43 05 Mar 2017 UTC: INFO: QC.py(180): Changed (1/659) 248 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 11:10:43 05 Mar 2017 UTC: INFO: QC.py(180): Changed (13/659) 198:201 212 213 237 238 240 248 254 277 278 to QC_INTERPOLATED because changed corrected temp implies changed speed 11:10:43 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.53 cm/s 11:10:43 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.21 cm/s 11:10:43 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 11:10:43 05 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (186/659) 133:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 11:10:43 05 Mar 2017 UTC: INFO: QC.py(180): Changed (2/659) 2 201 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 11:10:43 05 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (186/659) 133:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 11:10:43 05 Mar 2017 UTC: INFO: QC.py(180): Changed (2/659) 2 201 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 11:10:43 05 Mar 2017 UTC: INFO: QC.py(180): Changed (14/659) 1:6 243:247 657:659 to QC_BAD because changed salinity implies changed optode oxygen 11:10:43 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 11:10:43 05 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 11:10:44 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 11:10:44 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 323: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.12% reduction 11:10:44 05 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.323 11:10:44 05 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:10:44 05 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:10:44 05 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:10:44 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 11:10:44 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 11:13:19 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 11:13:20 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 11:13:20 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 11:13:49 05 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:13:49 05 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:13:49 05 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:13:49 05 Mar 2017 UTC /home/sg626/p6260323.log /home/sg626/p6260323.eng /home/sg626/p6260323.asc /home/sg626/p6260323.pro /home/sg626/p6260323.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 11:13:49 05 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:13:49 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:13:49 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:13:49 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:13:49 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:13:49 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:13:49 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:13:49 05 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:13:49 05 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:13:49 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:13:49 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:13:49 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:13:49 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:13:49 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:13:49 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:13:49 05 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:13:49 05 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 11:13:49 05 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 11:13:49 05 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 11:13:49 05 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 11:13:49 05 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:13:49 05 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:13:49 05 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:13:49 05 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 11:13:49 05 Mar 2017 UTC 14:50:15 05 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 21903 14:50:15 05 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:53:03 05 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 22031 14:53:03 05 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:53:03 05 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 14:53:03 05 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 14:53:03 05 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:53:03 05 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170305045302 ] 14:53:03 05 Mar 2017 UTC: INFO: Base.py(1333): PID:22038 14:53:03 05 Mar 2017 UTC: INFO: Base.py(1375): Started processing 14:53:03 05 Mar 2017 UTC 14:53:03 05 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 14:53:04 05 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 14:53:04 05 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:53:04 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:53:04 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:324 calls_made:2 call_cycle:0 14:53:04 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:53:04 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:324 calls_made:2 call_cycle:0 14:53:04 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:53:04 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:324 calls_made:2 call_cycle:0 14:53:04 05 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:324 calls_made:2 call_cycle:0 2248.5590 -15731.4400 03/05/17 14:45:45 UTC) to sdrifter@soest.hawaii.edu 14:53:04 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:324 calls_made:2 call_cycle:0 14:53:04 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:53:04 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:324 calls_made:2 call_cycle:0 14:53:04 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:53:04 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:324 calls_made:2 call_cycle:0 14:53:04 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:53:04 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:324 calls_made:2 call_cycle:0 14:53:04 05 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:53:04 05 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:53:09 05 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:53:10 05 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:53:10 05 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 14:53:10 05 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:53:10 05 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:53:10 05 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 14:53:12 05 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0324lz 14:53:12 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0324lz.x00 14:53:12 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0324lz.x01 14:53:12 05 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0324lz.r in process_file_group 14:53:12 05 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260324.log 14:53:12 05 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 14:53:12 05 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0324dz 14:53:12 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0324dz.x00 14:53:12 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0324dz.x01 14:53:12 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0324dz.x02 14:53:12 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0324dz.x03 14:53:12 05 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0324dz.r in process_file_group 14:53:12 05 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [324] 14:53:12 05 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [324] 14:53:12 05 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260324) for profiles 14:53:12 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 14:53:12 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/641) 640 641 to QC_BAD because CT out of water 14:53:12 05 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.066m) 14:53:12 05 Mar 2017 UTC: INFO: QC.py(365): Changed (15/641) 2 211 215 223 238:240 242 249 250 267 274 287 288 ... to QC_PROBABLY_BAD because raw temperature spikes 14:53:12 05 Mar 2017 UTC: INFO: QC.py(377): Changed (1/641) 641 to QC_BAD because raw salinity below bound 14:53:12 05 Mar 2017 UTC: INFO: QC.py(408): Changed (10/641) 211 215 223 238 242 249 250 257 274 287 to QC_PROBABLY_BAD because raw conductivity spikes 14:53:12 05 Mar 2017 UTC: INFO: QC.py(180): Changed (15/641) 2 211 215 223 238:240 242 249 250 267 274 287 288 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:53:12 05 Mar 2017 UTC: INFO: QC.py(180): Changed (1/641) 257 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 14:53:12 05 Mar 2017 UTC: INFO: QC.py(180): Changed (1/641) 640 to QC_BAD because changed raw cond implies changed raw salinity 14:53:12 05 Mar 2017 UTC: INFO: QC.py(365): Changed (15/641) 2 211 215 223 238:240 242 249 250 267 274 287 288 ... to QC_INTERPOLATED because temperature spikes 14:53:12 05 Mar 2017 UTC: INFO: QC.py(377): Changed (1/641) 641 to QC_BAD because salinity below bound 14:53:12 05 Mar 2017 UTC: INFO: QC.py(408): Changed (10/641) 211 215 223 238 242 249 250 257 274 287 to QC_INTERPOLATED because conductivity spikes 14:53:12 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/641) 255:259 to QC_BAD because slow apogee CT flow 14:53:12 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/641) 1:7 to QC_BAD because prior to dive start 14:53:12 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/641) 1:7 255:259 640 641 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:53:12 05 Mar 2017 UTC: INFO: QC.py(180): Changed (14/641) 1:7 255:259 640 641 to QC_BAD because changed corrected salin implies changed speed 14:53:13 05 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:53:13 05 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 324 interp_salinity data_points in_between 338 380 % suspect thermal-inertia points 356 14:53:13 05 Mar 2017 UTC: INFO: QC.py(180): Changed (13/641) 211 215 223 238:240 242 249 250 267 274 287 288 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 14:53:13 05 Mar 2017 UTC: INFO: QC.py(180): Changed (13/641) 211 215 223 238:240 242 249 250 267 274 287 288 to QC_INTERPOLATED because changed corrected temp implies changed speed 14:53:13 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.57 cm/s 14:53:13 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.99 cm/s 14:53:13 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:53:13 05 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (191/641) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:53:13 05 Mar 2017 UTC: INFO: QC.py(180): Changed (3/641) 2 211 640 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 14:53:13 05 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (191/641) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 14:53:13 05 Mar 2017 UTC: INFO: QC.py(180): Changed (3/641) 2 211 640 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 14:53:13 05 Mar 2017 UTC: INFO: QC.py(180): Changed (14/641) 1:7 255:259 640 641 to QC_BAD because changed salinity implies changed optode oxygen 14:53:13 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:53:13 05 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:53:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 14:53:14 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 324: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.18% reduction 14:53:14 05 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.324 14:53:14 05 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:53:14 05 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:53:14 05 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:53:14 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 14:53:14 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 14:55:49 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 14:55:50 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 14:55:50 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 14:56:20 05 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:56:20 05 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:56:20 05 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:56:20 05 Mar 2017 UTC /home/sg626/p6260324.log /home/sg626/p6260324.eng /home/sg626/p6260324.asc /home/sg626/p6260324.pro /home/sg626/p6260324.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 14:56:20 05 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:56:20 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:56:20 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:56:20 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:56:20 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:56:20 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:56:20 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:56:20 05 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:56:20 05 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:56:20 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:56:20 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:56:20 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:56:20 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:56:20 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:56:20 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:56:20 05 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:56:20 05 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:56:20 05 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:56:20 05 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:56:20 05 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:56:20 05 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:56:20 05 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:56:20 05 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:56:20 05 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 14:56:20 05 Mar 2017 UTC 18:19:37 05 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 27858 18:19:37 05 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 18:22:32 05 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 28157 18:22:32 05 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:22:32 05 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 18:22:32 05 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 18:22:32 05 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:22:32 05 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170305082231 ] 18:22:32 05 Mar 2017 UTC: INFO: Base.py(1333): PID:28165 18:22:32 05 Mar 2017 UTC: INFO: Base.py(1375): Started processing 18:22:32 05 Mar 2017 UTC 18:22:32 05 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 18:22:33 05 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 18:22:33 05 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:22:33 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:22:33 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:325 calls_made:1 call_cycle:0 18:22:33 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:22:33 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:325 calls_made:1 call_cycle:0 18:22:33 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:22:33 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:325 calls_made:1 call_cycle:0 18:22:33 05 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:325 calls_made:1 call_cycle:0 2247.3880 -15732.5970 03/05/17 18:17:30 UTC) to sdrifter@soest.hawaii.edu 18:22:33 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:325 calls_made:1 call_cycle:0 18:22:33 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:22:33 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:325 calls_made:1 call_cycle:0 18:22:33 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:22:33 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:325 calls_made:1 call_cycle:0 18:22:33 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:22:33 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:325 calls_made:1 call_cycle:0 18:22:33 05 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:22:33 05 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:22:38 05 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:22:39 05 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:22:39 05 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 18:22:39 05 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:22:39 05 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:22:39 05 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 18:22:40 05 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0325lz 18:22:40 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0325lz.x00 18:22:40 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0325lz.x01 18:22:40 05 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0325lz.r in process_file_group 18:22:40 05 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260325.log 18:22:40 05 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 18:22:40 05 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0325dz 18:22:40 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0325dz.x00 18:22:40 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0325dz.x01 18:22:40 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0325dz.x02 18:22:40 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0325dz.x03 18:22:40 05 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0325dz.r in process_file_group 18:22:41 05 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [325] 18:22:41 05 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [325] 18:22:41 05 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260325) for profiles 18:22:41 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 18:22:41 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/629) 628 629 to QC_BAD because CT out of water 18:22:41 05 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.106m) 18:22:41 05 Mar 2017 UTC: INFO: QC.py(365): Changed (11/629) 208 218 219 221 222 226 227 256 261 278 280 to QC_PROBABLY_BAD because raw temperature spikes 18:22:41 05 Mar 2017 UTC: INFO: QC.py(408): Changed (11/629) 208 218 221 222 226 227 243 256 261 278 280 to QC_PROBABLY_BAD because raw conductivity spikes 18:22:41 05 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <211 pt uncorrectable 951.1m SUSPECT weak conductivity anomaly n:-0.28 p:0.33> 18:22:41 05 Mar 2017 UTC: INFO: QC.py(180): Changed (11/629) 208 218 219 221 222 226 227 256 261 278 280 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 18:22:41 05 Mar 2017 UTC: INFO: QC.py(180): Changed (1/629) 243 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 18:22:41 05 Mar 2017 UTC: INFO: QC.py(180): Changed (2/629) 628 629 to QC_BAD because changed raw cond implies changed raw salinity 18:22:41 05 Mar 2017 UTC: INFO: QC.py(365): Changed (11/629) 208 218 219 221 222 226 227 256 261 278 280 to QC_INTERPOLATED because temperature spikes 18:22:41 05 Mar 2017 UTC: INFO: QC.py(408): Changed (11/629) 208 218 221 222 226 227 243 256 261 278 280 to QC_INTERPOLATED because conductivity spikes 18:22:41 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/629) 242:246 to QC_BAD because slow apogee CT flow 18:22:41 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/629) 1:6 to QC_BAD because prior to dive start 18:22:41 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/629) 1:6 242:246 628 629 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 18:22:41 05 Mar 2017 UTC: INFO: QC.py(180): Changed (13/629) 1:6 242:246 628 629 to QC_BAD because changed corrected salin implies changed speed 18:22:42 05 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 18:22:42 05 Mar 2017 UTC: INFO: QC.py(180): Changed (11/629) 208 218 219 221 222 226 227 256 261 278 280 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 18:22:42 05 Mar 2017 UTC: INFO: QC.py(180): Changed (11/629) 208 218 219 221 222 226 227 256 261 278 280 to QC_INTERPOLATED because changed corrected temp implies changed speed 18:22:42 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.64 cm/s 18:22:42 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.91 cm/s 18:22:42 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 18:22:42 05 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (178/629) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 18:22:42 05 Mar 2017 UTC: INFO: QC.py(180): Changed (4/629) 221 226 256 261 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 18:22:42 05 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (178/629) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 18:22:42 05 Mar 2017 UTC: INFO: QC.py(180): Changed (4/629) 221 226 256 261 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 18:22:42 05 Mar 2017 UTC: INFO: QC.py(180): Changed (13/629) 1:6 242:246 628 629 to QC_BAD because changed salinity implies changed optode oxygen 18:22:42 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 18:22:42 05 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 18:22:42 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 18:22:42 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 325: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.07% reduction 18:22:42 05 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.325 18:22:42 05 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:22:42 05 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:22:42 05 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:22:43 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 18:22:43 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 18:25:19 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 18:25:20 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 18:25:20 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 18:25:50 05 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:25:50 05 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:25:50 05 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:25:50 05 Mar 2017 UTC /home/sg626/p6260325.log /home/sg626/p6260325.eng /home/sg626/p6260325.asc /home/sg626/p6260325.pro /home/sg626/p6260325.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 18:25:50 05 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:25:50 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:25:50 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:25:50 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:25:50 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:25:50 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:25:50 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:25:50 05 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:25:50 05 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:25:50 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:25:50 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:25:50 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:25:50 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:25:50 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:25:50 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:25:50 05 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:25:50 05 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 18:25:50 05 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 18:25:50 05 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 18:25:50 05 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 18:25:50 05 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:25:50 05 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:25:50 05 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:25:50 05 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 18:25:50 05 Mar 2017 UTC 21:55:05 05 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 1896 21:55:05 05 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:58:02 05 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 2025 21:58:02 05 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:58:02 05 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:58:02 05 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:58:02 05 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:58:02 05 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170305115802 ] 21:58:02 05 Mar 2017 UTC: INFO: Base.py(1333): PID:2033 21:58:02 05 Mar 2017 UTC: INFO: Base.py(1375): Started processing 21:58:02 05 Mar 2017 UTC 21:58:02 05 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:58:03 05 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:58:03 05 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:58:03 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:58:03 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:326 calls_made:3 call_cycle:0 21:58:03 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:58:03 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:326 calls_made:3 call_cycle:0 21:58:03 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:58:03 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:326 calls_made:3 call_cycle:0 21:58:03 05 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:326 calls_made:3 call_cycle:0 2247.5810 -15733.6500 03/05/17 21:48:56 UTC) to sdrifter@soest.hawaii.edu 21:58:03 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:326 calls_made:3 call_cycle:0 21:58:03 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:58:03 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:326 calls_made:3 call_cycle:0 21:58:03 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:58:03 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:326 calls_made:3 call_cycle:0 21:58:03 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:58:03 05 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:326 calls_made:3 call_cycle:0 21:58:03 05 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:58:03 05 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:58:09 05 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:58:09 05 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:58:09 05 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:58:09 05 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:58:10 05 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:58:10 05 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:58:11 05 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0326lz 21:58:11 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0326lz.x00 21:58:11 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0326lz.x01 21:58:11 05 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0326lz.r in process_file_group 21:58:11 05 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260326.log 21:58:11 05 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:58:11 05 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0326dz 21:58:11 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0326dz.x00 21:58:11 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0326dz.x01 21:58:11 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0326dz.x02 21:58:11 05 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0326dz.x03 21:58:11 05 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0326dz.r in process_file_group 21:58:12 05 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [326] 21:58:12 05 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [326] 21:58:12 05 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260326) for profiles 21:58:12 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:58:12 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/641) 639 640 to QC_BAD because CT out of water 21:58:12 05 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.230m) 21:58:12 05 Mar 2017 UTC: INFO: QC.py(365): Changed (9/641) 2 3 210 226 230 254 264 275 640 to QC_PROBABLY_BAD because raw temperature spikes 21:58:12 05 Mar 2017 UTC: INFO: QC.py(408): Changed (9/641) 3 210 212 226 230 254 264 265 275 to QC_PROBABLY_BAD because raw conductivity spikes 21:58:12 05 Mar 2017 UTC: INFO: QC.py(180): Changed (9/641) 2 3 210 226 230 254 264 275 640 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:58:12 05 Mar 2017 UTC: INFO: QC.py(180): Changed (2/641) 212 265 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 21:58:12 05 Mar 2017 UTC: INFO: QC.py(180): Changed (2/641) 639 640 to QC_BAD because changed raw cond implies changed raw salinity 21:58:12 05 Mar 2017 UTC: INFO: QC.py(365): Changed (9/641) 2 3 210 226 230 254 264 275 640 to QC_INTERPOLATED because temperature spikes 21:58:12 05 Mar 2017 UTC: INFO: QC.py(408): Changed (9/641) 3 210 212 226 230 254 264 265 275 to QC_INTERPOLATED because conductivity spikes 21:58:12 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/641) 240:244 to QC_BAD because slow apogee CT flow 21:58:12 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/641) 1:6 to QC_BAD because prior to dive start 21:58:12 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/641) 638 641 to QC_BAD because end of climb 21:58:12 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/641) 1:6 240:244 638:641 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:58:12 05 Mar 2017 UTC: INFO: QC.py(180): Changed (15/641) 1:6 240:244 638:641 to QC_BAD because changed corrected salin implies changed speed 21:58:13 05 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:58:13 05 Mar 2017 UTC: INFO: QC.py(180): Changed (6/641) 210 226 230 254 264 275 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 21:58:13 05 Mar 2017 UTC: INFO: QC.py(180): Changed (2/641) 212 265 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 21:58:13 05 Mar 2017 UTC: INFO: QC.py(180): Changed (6/641) 210 226 230 254 264 275 to QC_INTERPOLATED because changed corrected temp implies changed speed 21:58:13 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.98 cm/s 21:58:13 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.99 cm/s 21:58:13 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:58:13 05 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (179/641) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:58:13 05 Mar 2017 UTC: INFO: QC.py(180): Changed (4/641) 2 3 226 640 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:58:13 05 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (179/641) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:58:13 05 Mar 2017 UTC: INFO: QC.py(180): Changed (4/641) 2 3 226 640 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:58:13 05 Mar 2017 UTC: INFO: QC.py(180): Changed (15/641) 1:6 240:244 638:641 to QC_BAD because changed salinity implies changed optode oxygen 21:58:13 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:58:13 05 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:58:13 05 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:58:13 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 326: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.34% reduction 21:58:13 05 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.326 21:58:13 05 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:58:13 05 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:58:13 05 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:58:13 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:58:13 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 22:00:51 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 22:00:52 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 22:00:52 05 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 22:01:23 05 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:01:23 05 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:01:23 05 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:01:23 05 Mar 2017 UTC /home/sg626/p6260326.log /home/sg626/p6260326.eng /home/sg626/p6260326.asc /home/sg626/p6260326.pro /home/sg626/p6260326.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 22:01:23 05 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:01:23 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:01:23 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:01:23 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:01:23 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:01:23 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:01:23 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:01:23 05 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:01:23 05 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:01:23 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:01:23 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:01:23 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:01:23 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:01:23 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:01:23 05 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:01:23 05 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:01:23 05 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:01:23 05 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:01:23 05 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:01:23 05 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:01:23 05 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:01:23 05 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:01:23 05 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:01:23 05 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 22:01:23 05 Mar 2017 UTC 01:38:24 06 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 8197 01:38:24 06 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:41:27 06 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 8408 01:41:27 06 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:41:27 06 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:41:27 06 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:41:27 06 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:41:27 06 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170305154126 ] 01:41:27 06 Mar 2017 UTC: INFO: Base.py(1333): PID:8415 01:41:27 06 Mar 2017 UTC: INFO: Base.py(1375): Started processing 01:41:27 06 Mar 2017 UTC 01:41:27 06 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:41:28 06 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:41:28 06 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:41:28 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:41:28 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:327 calls_made:1 call_cycle:0 01:41:28 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:41:28 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:327 calls_made:1 call_cycle:0 01:41:28 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:41:28 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:327 calls_made:1 call_cycle:0 01:41:28 06 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:327 calls_made:1 call_cycle:0 2247.0210 -15734.5920 03/06/17 01:36:00 UTC) to sdrifter@soest.hawaii.edu 01:41:28 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:327 calls_made:1 call_cycle:0 01:41:28 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:41:28 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:327 calls_made:1 call_cycle:0 01:41:28 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:41:28 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:327 calls_made:1 call_cycle:0 01:41:28 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:41:28 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:327 calls_made:1 call_cycle:0 01:41:28 06 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:41:28 06 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:41:33 06 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:41:34 06 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:41:34 06 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:41:34 06 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:41:34 06 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:41:34 06 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:41:35 06 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0327lz 01:41:35 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0327lz.x00 01:41:35 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0327lz.x01 01:41:35 06 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0327lz.r in process_file_group 01:41:35 06 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260327.log 01:41:35 06 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:41:35 06 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0327dz 01:41:35 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0327dz.x00 01:41:35 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0327dz.x01 01:41:35 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0327dz.x02 01:41:35 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0327dz.x03 01:41:35 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0327dz.x04 01:41:35 06 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0327dz.r in process_file_group 01:41:36 06 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [327] 01:41:36 06 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [327] 01:41:36 06 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260327) for profiles 01:41:36 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:41:36 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/674) 673 674 to QC_BAD because CT out of water 01:41:36 06 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.080m) 01:41:36 06 Mar 2017 UTC: INFO: QC.py(365): Changed (14/674) 2 206:209 214 230 234 235 256 284 285 672 673 to QC_PROBABLY_BAD because raw temperature spikes 01:41:36 06 Mar 2017 UTC: INFO: QC.py(408): Changed (12/674) 3 206:209 214 230 234 235 256 284 285 to QC_PROBABLY_BAD because raw conductivity spikes 01:41:36 06 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <215 pt uncorrectable 894.0m SUSPECT weak conductivity anomaly n:-0.33 p:0.30> 01:41:36 06 Mar 2017 UTC: INFO: QC.py(180): Changed (14/674) 2 206:209 214 230 234 235 256 284 285 672 673 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:41:36 06 Mar 2017 UTC: INFO: QC.py(180): Changed (1/674) 3 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 01:41:36 06 Mar 2017 UTC: INFO: QC.py(180): Changed (2/674) 673 674 to QC_BAD because changed raw cond implies changed raw salinity 01:41:36 06 Mar 2017 UTC: INFO: QC.py(365): Changed (14/674) 2 206:209 214 230 234 235 256 284 285 672 673 to QC_INTERPOLATED because temperature spikes 01:41:36 06 Mar 2017 UTC: INFO: QC.py(408): Changed (12/674) 3 206:209 214 230 234 235 256 284 285 to QC_INTERPOLATED because conductivity spikes 01:41:36 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/674) 243:247 to QC_BAD because slow apogee CT flow 01:41:36 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/674) 1:6 to QC_BAD because prior to dive start 01:41:36 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/674) 1:6 243:247 673 674 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:41:36 06 Mar 2017 UTC: INFO: QC.py(180): Changed (13/674) 1:6 243:247 673 674 to QC_BAD because changed corrected salin implies changed speed 01:41:37 06 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:41:37 06 Mar 2017 UTC: INFO: QC.py(180): Changed (12/674) 206:209 214 230 234 235 256 284 285 672 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 01:41:37 06 Mar 2017 UTC: INFO: QC.py(180): Changed (12/674) 206:209 214 230 234 235 256 284 285 672 to QC_INTERPOLATED because changed corrected temp implies changed speed 01:41:37 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.69 cm/s 01:41:37 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.18 cm/s 01:41:37 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:41:37 06 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (190/674) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:41:37 06 Mar 2017 UTC: INFO: QC.py(180): Changed (5/674) 2 206 256 672 673 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 01:41:37 06 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (190/674) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 01:41:37 06 Mar 2017 UTC: INFO: QC.py(180): Changed (5/674) 2 206 256 672 673 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 01:41:37 06 Mar 2017 UTC: INFO: QC.py(180): Changed (13/674) 1:6 243:247 673 674 to QC_BAD because changed salinity implies changed optode oxygen 01:41:37 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:41:37 06 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:41:37 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:41:37 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 327: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.93% reduction 01:41:37 06 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.327 01:41:37 06 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:41:37 06 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:41:37 06 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:41:38 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:41:38 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 01:44:17 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 01:44:18 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 01:44:18 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 01:44:48 06 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:44:48 06 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:44:48 06 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:44:48 06 Mar 2017 UTC /home/sg626/p6260327.log /home/sg626/p6260327.eng /home/sg626/p6260327.asc /home/sg626/p6260327.pro /home/sg626/p6260327.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 01:44:48 06 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:44:48 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:44:48 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:44:48 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:44:48 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:44:48 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:44:48 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:44:48 06 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:44:48 06 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:44:48 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:44:48 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:44:48 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:44:48 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:44:48 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:44:48 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:44:48 06 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:44:48 06 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:44:48 06 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:44:48 06 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:44:48 06 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:44:48 06 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:44:48 06 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:44:48 06 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:44:48 06 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 01:44:48 06 Mar 2017 UTC 05:13:15 06 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 14184 05:13:15 06 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:16:11 06 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 14307 05:16:11 06 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:16:11 06 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:16:11 06 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:16:11 06 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:16:11 06 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170305191610 ] 05:16:11 06 Mar 2017 UTC: INFO: Base.py(1333): PID:14315 05:16:11 06 Mar 2017 UTC: INFO: Base.py(1375): Started processing 05:16:11 06 Mar 2017 UTC 05:16:11 06 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:16:12 06 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:16:12 06 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:16:12 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:16:12 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:328 calls_made:1 call_cycle:0 05:16:12 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:16:12 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:328 calls_made:1 call_cycle:0 05:16:12 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:16:12 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:328 calls_made:1 call_cycle:0 05:16:12 06 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:328 calls_made:1 call_cycle:0 2245.9580 -15735.7080 03/06/17 05:11:01 UTC) to sdrifter@soest.hawaii.edu 05:16:12 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:328 calls_made:1 call_cycle:0 05:16:12 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:16:12 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:328 calls_made:1 call_cycle:0 05:16:12 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:16:12 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:328 calls_made:1 call_cycle:0 05:16:12 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:16:12 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:328 calls_made:1 call_cycle:0 05:16:12 06 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:16:12 06 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:16:17 06 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:16:18 06 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:16:18 06 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:16:18 06 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:16:18 06 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:16:18 06 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:16:20 06 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0328lz 05:16:20 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0328lz.x00 05:16:20 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0328lz.x01 05:16:20 06 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0328lz.r in process_file_group 05:16:20 06 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260328.log 05:16:20 06 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:16:20 06 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0328dz 05:16:20 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0328dz.x00 05:16:20 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0328dz.x01 05:16:20 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0328dz.x02 05:16:20 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0328dz.x03 05:16:20 06 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0328dz.r in process_file_group 05:16:20 06 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [328] 05:16:20 06 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [328] 05:16:20 06 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260328) for profiles 05:16:20 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:16:20 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/628) 627 628 to QC_BAD because CT out of water 05:16:20 06 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.144m) 05:16:20 06 Mar 2017 UTC: INFO: QC.py(365): Changed (20/628) 2:4 193 194 198 205 209 210 221 224 229 232 261 ... to QC_PROBABLY_BAD because raw temperature spikes 05:16:20 06 Mar 2017 UTC: INFO: QC.py(377): Changed (1/628) 627 to QC_BAD because raw salinity below bound 05:16:20 06 Mar 2017 UTC: INFO: QC.py(408): Changed (12/628) 193 194 205 209 221 224 232 261 270 271 278 285 to QC_PROBABLY_BAD because raw conductivity spikes 05:16:20 06 Mar 2017 UTC: INFO: QC.py(180): Changed (20/628) 2:4 193 194 198 205 209 210 221 224 229 232 261 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:16:20 06 Mar 2017 UTC: INFO: QC.py(180): Changed (1/628) 285 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 05:16:20 06 Mar 2017 UTC: INFO: QC.py(180): Changed (1/628) 628 to QC_BAD because changed raw cond implies changed raw salinity 05:16:20 06 Mar 2017 UTC: INFO: QC.py(365): Changed (20/628) 2:4 193 194 198 205 209 210 221 224 229 232 261 ... to QC_INTERPOLATED because temperature spikes 05:16:20 06 Mar 2017 UTC: INFO: QC.py(377): Changed (1/628) 627 to QC_BAD because salinity below bound 05:16:20 06 Mar 2017 UTC: INFO: QC.py(408): Changed (12/628) 193 194 205 209 221 224 232 261 270 271 278 285 to QC_INTERPOLATED because conductivity spikes 05:16:20 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/628) 243:247 to QC_BAD because slow apogee CT flow 05:16:20 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/628) 1:6 to QC_BAD because prior to dive start 05:16:20 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/628) 1:6 243:247 627 628 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:16:20 06 Mar 2017 UTC: INFO: QC.py(180): Changed (13/628) 1:6 243:247 627 628 to QC_BAD because changed corrected salin implies changed speed 05:16:21 06 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:16:21 06 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 328 interp_salinity data_points in_between 402 407 % suspect thermal-inertia points 403:405 05:16:21 06 Mar 2017 UTC: INFO: QC.py(180): Changed (17/628) 193 194 198 205 209 210 221 224 229 232 261 264 ... to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 05:16:21 06 Mar 2017 UTC: INFO: QC.py(180): Changed (1/628) 285 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 05:16:21 06 Mar 2017 UTC: INFO: QC.py(180): Changed (17/628) 193 194 198 205 209 210 221 224 229 232 261 264 ... to QC_INTERPOLATED because changed corrected temp implies changed speed 05:16:21 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.85 cm/s 05:16:21 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.24 cm/s 05:16:21 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:16:21 06 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (186/628) 133:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:16:21 06 Mar 2017 UTC: INFO: QC.py(180): Changed (6/628) 2:4 221 261 271 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:16:21 06 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (186/628) 133:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:16:21 06 Mar 2017 UTC: INFO: QC.py(180): Changed (6/628) 2:4 221 261 271 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:16:21 06 Mar 2017 UTC: INFO: QC.py(180): Changed (13/628) 1:6 243:247 627 628 to QC_BAD because changed salinity implies changed optode oxygen 05:16:21 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:16:21 06 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:16:21 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 05:16:21 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 328: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.07% reduction 05:16:21 06 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.328 05:16:21 06 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:16:21 06 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:16:21 06 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:16:22 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 05:16:22 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 05:19:02 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 05:19:03 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 05:19:03 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 05:19:33 06 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:19:33 06 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:19:33 06 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:19:33 06 Mar 2017 UTC /home/sg626/p6260328.log /home/sg626/p6260328.eng /home/sg626/p6260328.asc /home/sg626/p6260328.pro /home/sg626/p6260328.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 05:19:33 06 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:19:33 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:19:33 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:19:33 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:19:33 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:19:33 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:19:33 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:19:33 06 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:19:33 06 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:19:33 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:19:33 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:19:33 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:19:33 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:19:33 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:19:33 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:19:33 06 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:19:33 06 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:19:33 06 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:19:33 06 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:19:33 06 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:19:33 06 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:19:33 06 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:19:33 06 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:19:33 06 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 05:19:33 06 Mar 2017 UTC 08:53:11 06 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 20707 08:53:11 06 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:56:02 06 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 20887 08:56:02 06 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:56:02 06 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:56:02 06 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:56:02 06 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:56:02 06 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170305225602 ] 08:56:02 06 Mar 2017 UTC: INFO: Base.py(1333): PID:20894 08:56:02 06 Mar 2017 UTC: INFO: Base.py(1375): Started processing 08:56:02 06 Mar 2017 UTC 08:56:02 06 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:56:03 06 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:56:03 06 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:56:03 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:56:03 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:329 calls_made:1 call_cycle:0 08:56:03 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:56:03 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:329 calls_made:1 call_cycle:0 08:56:03 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:56:03 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:329 calls_made:1 call_cycle:0 08:56:03 06 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:329 calls_made:1 call_cycle:0 2245.0190 -15737.1880 03/06/17 08:51:01 UTC) to sdrifter@soest.hawaii.edu 08:56:04 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:329 calls_made:1 call_cycle:0 08:56:04 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:56:04 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:329 calls_made:1 call_cycle:0 08:56:04 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:56:04 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:329 calls_made:1 call_cycle:0 08:56:04 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:56:04 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:329 calls_made:1 call_cycle:0 08:56:04 06 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:56:04 06 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:56:09 06 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:56:10 06 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:56:10 06 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:56:10 06 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:56:10 06 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:56:10 06 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:56:11 06 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0329lz 08:56:11 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0329lz.x00 08:56:11 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0329lz.x01 08:56:11 06 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0329lz.r in process_file_group 08:56:11 06 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260329.log 08:56:11 06 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:56:11 06 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0329dz 08:56:11 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0329dz.x00 08:56:11 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0329dz.x01 08:56:11 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0329dz.x02 08:56:11 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0329dz.x03 08:56:11 06 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0329dz.r in process_file_group 08:56:12 06 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [329] 08:56:12 06 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [329] 08:56:12 06 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260329) for profiles 08:56:12 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:56:12 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/652) 651 652 to QC_BAD because CT out of water 08:56:12 06 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.054m) 08:56:12 06 Mar 2017 UTC: INFO: QC.py(365): Changed (12/652) 2 200 211 221 224 229 263 264 271 280 281 650 to QC_PROBABLY_BAD because raw temperature spikes 08:56:12 06 Mar 2017 UTC: INFO: QC.py(377): Changed (2/652) 651 652 to QC_BAD because raw salinity below bound 08:56:12 06 Mar 2017 UTC: INFO: QC.py(408): Changed (13/652) 202 205 211 218 221 224 229 231 263 264 271 280 ... to QC_PROBABLY_BAD because raw conductivity spikes 08:56:12 06 Mar 2017 UTC: INFO: QC.py(180): Changed (12/652) 2 200 211 221 224 229 263 264 271 280 281 650 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:56:12 06 Mar 2017 UTC: INFO: QC.py(180): Changed (4/652) 202 205 218 231 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 08:56:12 06 Mar 2017 UTC: INFO: QC.py(365): Changed (12/652) 2 200 211 221 224 229 263 264 271 280 281 650 to QC_INTERPOLATED because temperature spikes 08:56:12 06 Mar 2017 UTC: INFO: QC.py(377): Changed (2/652) 651 652 to QC_BAD because salinity below bound 08:56:12 06 Mar 2017 UTC: INFO: QC.py(408): Changed (13/652) 202 205 211 218 221 224 229 231 263 264 271 280 ... to QC_INTERPOLATED because conductivity spikes 08:56:12 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/652) 247:251 to QC_BAD because slow apogee CT flow 08:56:12 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/652) 1:6 to QC_BAD because prior to dive start 08:56:12 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/652) 1:6 247:251 651 652 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:56:12 06 Mar 2017 UTC: INFO: QC.py(180): Changed (13/652) 1:6 247:251 651 652 to QC_BAD because changed corrected salin implies changed speed 08:56:13 06 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:56:13 06 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 329 interp_salinity data_points in_between 395 402 % suspect thermal-inertia points 397 08:56:13 06 Mar 2017 UTC: INFO: QC.py(180): Changed (11/652) 200 211 221 224 229 263 264 271 280 281 650 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 08:56:13 06 Mar 2017 UTC: INFO: QC.py(180): Changed (4/652) 202 205 218 231 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 08:56:13 06 Mar 2017 UTC: INFO: QC.py(180): Changed (11/652) 200 211 221 224 229 263 264 271 280 281 650 to QC_INTERPOLATED because changed corrected temp implies changed speed 08:56:13 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.61 cm/s 08:56:13 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.15 cm/s 08:56:13 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:56:13 06 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (189/652) 135 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:56:13 06 Mar 2017 UTC: INFO: QC.py(180): Changed (6/652) 2 211 221 271 281 650 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:56:13 06 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (189/652) 135 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:56:13 06 Mar 2017 UTC: INFO: QC.py(180): Changed (6/652) 2 211 221 271 281 650 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:56:13 06 Mar 2017 UTC: INFO: QC.py(180): Changed (13/652) 1:6 247:251 651 652 to QC_BAD because changed salinity implies changed optode oxygen 08:56:13 06 Mar 2017 UTC: INFO: QC.py(180): Changed (1/652) 231 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 08:56:13 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:56:13 06 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:56:13 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 08:56:13 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 329: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.99% reduction 08:56:13 06 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.329 08:56:13 06 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:56:13 06 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:56:13 06 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:56:14 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 08:56:14 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 08:58:54 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 08:58:55 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 08:58:55 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 08:59:26 06 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:59:26 06 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:59:26 06 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:59:26 06 Mar 2017 UTC /home/sg626/p6260329.log /home/sg626/p6260329.eng /home/sg626/p6260329.asc /home/sg626/p6260329.pro /home/sg626/p6260329.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 08:59:26 06 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:59:26 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:59:26 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:59:26 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:59:26 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:59:26 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:59:26 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:59:26 06 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:59:26 06 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:59:26 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:59:26 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:59:26 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:59:26 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:59:26 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:59:26 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:59:26 06 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:59:26 06 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:59:26 06 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:59:26 06 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:59:26 06 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:59:26 06 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:59:26 06 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:59:26 06 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:59:26 06 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 08:59:26 06 Mar 2017 UTC 12:31:27 06 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 30548 12:31:28 06 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:34:24 06 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 30728 12:34:24 06 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:34:24 06 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:34:24 06 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:34:24 06 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:34:24 06 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170306023423 ] 12:34:24 06 Mar 2017 UTC: INFO: Base.py(1333): PID:30736 12:34:24 06 Mar 2017 UTC: INFO: Base.py(1375): Started processing 12:34:24 06 Mar 2017 UTC 12:34:24 06 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:34:25 06 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:34:25 06 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:34:25 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:34:25 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:330 calls_made:1 call_cycle:0 12:34:25 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:34:25 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:330 calls_made:1 call_cycle:0 12:34:25 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:34:25 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:330 calls_made:1 call_cycle:0 12:34:25 06 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:330 calls_made:1 call_cycle:0 2246.1560 -15737.7520 03/06/17 12:29:20 UTC) to sdrifter@soest.hawaii.edu 12:34:25 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:330 calls_made:1 call_cycle:0 12:34:25 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:34:25 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:330 calls_made:1 call_cycle:0 12:34:25 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:34:25 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:330 calls_made:1 call_cycle:0 12:34:25 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:34:25 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:330 calls_made:1 call_cycle:0 12:34:25 06 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:34:25 06 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:34:30 06 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:34:31 06 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:34:31 06 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:34:31 06 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:34:31 06 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:34:31 06 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:34:32 06 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0330lz 12:34:32 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0330lz.x00 12:34:32 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0330lz.x01 12:34:32 06 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0330lz.r in process_file_group 12:34:32 06 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260330.log 12:34:32 06 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:34:32 06 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0330dz 12:34:32 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0330dz.x00 12:34:32 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0330dz.x01 12:34:32 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0330dz.x02 12:34:32 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0330dz.x03 12:34:32 06 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0330dz.r in process_file_group 12:34:33 06 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [330] 12:34:33 06 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [330] 12:34:33 06 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260330) for profiles 12:34:33 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 12:34:33 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/620) 619 620 to QC_BAD because CT out of water 12:34:33 06 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.098m) 12:34:33 06 Mar 2017 UTC: INFO: QC.py(365): Changed (9/620) 2 198 215:219 250 264 to QC_PROBABLY_BAD because raw temperature spikes 12:34:33 06 Mar 2017 UTC: INFO: QC.py(408): Changed (8/620) 198 215:219 250 264 to QC_PROBABLY_BAD because raw conductivity spikes 12:34:33 06 Mar 2017 UTC: INFO: QC.py(180): Changed (9/620) 2 198 215:219 250 264 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 12:34:33 06 Mar 2017 UTC: INFO: QC.py(180): Changed (2/620) 619 620 to QC_BAD because changed raw cond implies changed raw salinity 12:34:33 06 Mar 2017 UTC: INFO: QC.py(365): Changed (9/620) 2 198 215:219 250 264 to QC_INTERPOLATED because temperature spikes 12:34:33 06 Mar 2017 UTC: INFO: QC.py(408): Changed (8/620) 198 215:219 250 264 to QC_INTERPOLATED because conductivity spikes 12:34:33 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/620) 243:247 to QC_BAD because slow apogee CT flow 12:34:33 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/620) 1:6 to QC_BAD because prior to dive start 12:34:33 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/620) 1:6 243:247 619 620 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:34:33 06 Mar 2017 UTC: INFO: QC.py(180): Changed (13/620) 1:6 243:247 619 620 to QC_BAD because changed corrected salin implies changed speed 12:34:34 06 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:34:34 06 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 330 interp_salinity data_points in_between 346 367 % suspect thermal-inertia points 347 12:34:34 06 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 330 interp_salinity data_points in_between 369 374 % suspect thermal-inertia points 372 373 12:34:34 06 Mar 2017 UTC: INFO: QC.py(180): Changed (8/620) 198 215:219 250 264 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 12:34:34 06 Mar 2017 UTC: INFO: QC.py(180): Changed (8/620) 198 215:219 250 264 to QC_INTERPOLATED because changed corrected temp implies changed speed 12:34:34 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.56 cm/s 12:34:34 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.37 cm/s 12:34:34 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:34:34 06 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (190/620) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:34:34 06 Mar 2017 UTC: INFO: QC.py(180): Changed (2/620) 2 216 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 12:34:34 06 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (190/620) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 12:34:34 06 Mar 2017 UTC: INFO: QC.py(180): Changed (2/620) 2 216 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 12:34:34 06 Mar 2017 UTC: INFO: QC.py(180): Changed (13/620) 1:6 243:247 619 620 to QC_BAD because changed salinity implies changed optode oxygen 12:34:34 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:34:34 06 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:34:34 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 12:34:34 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 330: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.10% reduction 12:34:34 06 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.330 12:34:34 06 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:34:34 06 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:34:34 06 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:34:35 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 12:34:35 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 12:37:13 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 12:37:14 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 12:37:14 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 12:37:45 06 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:37:45 06 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:37:45 06 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 12:37:45 06 Mar 2017 UTC /home/sg626/p6260330.log /home/sg626/p6260330.eng /home/sg626/p6260330.asc /home/sg626/p6260330.pro /home/sg626/p6260330.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 12:37:45 06 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:37:45 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:37:45 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:37:45 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:37:45 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:37:45 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:37:45 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:37:45 06 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:37:45 06 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:37:45 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:37:45 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:37:45 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:37:45 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:37:45 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:37:45 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:37:45 06 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:37:45 06 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 12:37:45 06 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 12:37:45 06 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 12:37:45 06 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 12:37:45 06 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:37:45 06 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:37:45 06 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:37:45 06 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 12:37:45 06 Mar 2017 UTC 16:05:35 06 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 7673 16:05:35 06 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:08:26 06 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 7842 16:08:26 06 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:08:26 06 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:08:26 06 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:08:26 06 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:08:26 06 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170306060825 ] 16:08:26 06 Mar 2017 UTC: INFO: Base.py(1333): PID:7850 16:08:26 06 Mar 2017 UTC: INFO: Base.py(1375): Started processing 16:08:26 06 Mar 2017 UTC 16:08:26 06 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:08:27 06 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:08:27 06 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:08:27 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:08:27 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:331 calls_made:1 call_cycle:0 16:08:27 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:08:27 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:331 calls_made:1 call_cycle:0 16:08:27 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:08:27 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:331 calls_made:1 call_cycle:0 16:08:27 06 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:331 calls_made:1 call_cycle:0 2245.6480 -15739.0250 03/06/17 16:03:30 UTC) to sdrifter@soest.hawaii.edu 16:08:27 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:331 calls_made:1 call_cycle:0 16:08:27 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:08:27 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:331 calls_made:1 call_cycle:0 16:08:27 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:08:27 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:331 calls_made:1 call_cycle:0 16:08:27 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:08:27 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:331 calls_made:1 call_cycle:0 16:08:27 06 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:08:27 06 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:08:32 06 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:08:33 06 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:08:33 06 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:08:33 06 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:08:33 06 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:08:33 06 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:08:35 06 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0331lz 16:08:35 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0331lz.x00 16:08:35 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0331lz.x01 16:08:35 06 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0331lz.r in process_file_group 16:08:35 06 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260331.log 16:08:35 06 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:08:35 06 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0331dz 16:08:35 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0331dz.x00 16:08:35 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0331dz.x01 16:08:35 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0331dz.x02 16:08:35 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0331dz.x03 16:08:35 06 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0331dz.r in process_file_group 16:08:35 06 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [331] 16:08:35 06 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [331] 16:08:35 06 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260331) for profiles 16:08:35 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:08:35 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/598) 596:598 to QC_BAD because CT out of water 16:08:35 06 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.122m) 16:08:35 06 Mar 2017 UTC: INFO: QC.py(365): Changed (11/598) 2 3 197 199 213 231 233 234 267 270 597 to QC_PROBABLY_BAD because raw temperature spikes 16:08:35 06 Mar 2017 UTC: INFO: QC.py(377): Changed (2/598) 597 598 to QC_BAD because raw salinity below bound 16:08:35 06 Mar 2017 UTC: INFO: QC.py(408): Changed (6/598) 199 233 234 267 270 274 to QC_PROBABLY_BAD because raw conductivity spikes 16:08:35 06 Mar 2017 UTC: INFO: QC.py(180): Changed (10/598) 2 3 197 199 213 231 233 234 267 270 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:08:35 06 Mar 2017 UTC: INFO: QC.py(180): Changed (1/598) 274 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 16:08:35 06 Mar 2017 UTC: INFO: QC.py(180): Changed (1/598) 596 to QC_BAD because changed raw cond implies changed raw salinity 16:08:35 06 Mar 2017 UTC: INFO: QC.py(365): Changed (11/598) 2 3 197 199 213 231 233 234 267 270 597 to QC_INTERPOLATED because temperature spikes 16:08:35 06 Mar 2017 UTC: INFO: QC.py(377): Changed (2/598) 597 598 to QC_BAD because salinity below bound 16:08:35 06 Mar 2017 UTC: INFO: QC.py(408): Changed (6/598) 199 233 234 267 270 274 to QC_INTERPOLATED because conductivity spikes 16:08:35 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/598) 244:248 to QC_BAD because slow apogee CT flow 16:08:35 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/598) 1:6 to QC_BAD because prior to dive start 16:08:35 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/598) 1:6 244:248 596:598 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:08:35 06 Mar 2017 UTC: INFO: QC.py(180): Changed (14/598) 1:6 244:248 596:598 to QC_BAD because changed corrected salin implies changed speed 16:08:36 06 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:08:36 06 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 331 interp_salinity data_points in_between 344 352 % suspect thermal-inertia points 349 16:08:36 06 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 331 interp_salinity data_points in_between 380 384 % suspect thermal-inertia points 383 384 16:08:36 06 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 331 interp_salinity data_points in_between 386 389 % suspect thermal-inertia points 387 388 16:08:36 06 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 331 interp_salinity data_points in_between 391 402 % suspect thermal-inertia points 391 16:08:36 06 Mar 2017 UTC: INFO: QC.py(180): Changed (8/598) 197 199 213 231 233 234 267 270 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 16:08:36 06 Mar 2017 UTC: INFO: QC.py(180): Changed (1/598) 274 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 16:08:36 06 Mar 2017 UTC: INFO: QC.py(180): Changed (8/598) 197 199 213 231 233 234 267 270 to QC_INTERPOLATED because changed corrected temp implies changed speed 16:08:36 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.78 cm/s 16:08:36 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.32 cm/s 16:08:36 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:08:36 06 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (190/598) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:08:36 06 Mar 2017 UTC: INFO: QC.py(180): Changed (4/598) 2 3 231 597 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:08:36 06 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (190/598) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:08:36 06 Mar 2017 UTC: INFO: QC.py(180): Changed (4/598) 2 3 231 597 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:08:36 06 Mar 2017 UTC: INFO: QC.py(180): Changed (14/598) 1:6 244:248 596:598 to QC_BAD because changed salinity implies changed optode oxygen 16:08:36 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:08:36 06 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:08:36 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:08:37 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 331: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.34% reduction 16:08:37 06 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.331 16:08:37 06 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:08:37 06 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:08:37 06 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:08:37 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:08:37 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:11:17 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 16:11:18 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:11:18 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:11:48 06 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:11:48 06 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:11:48 06 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:11:48 06 Mar 2017 UTC /home/sg626/p6260331.log /home/sg626/p6260331.eng /home/sg626/p6260331.asc /home/sg626/p6260331.pro /home/sg626/p6260331.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:11:48 06 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:11:48 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:11:48 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:11:48 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:11:48 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:11:48 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:11:48 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:11:48 06 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:11:48 06 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:11:48 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:11:48 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:11:48 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:11:48 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:11:48 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:11:48 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:11:48 06 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:11:48 06 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:11:48 06 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:11:48 06 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:11:48 06 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:11:48 06 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:11:48 06 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:11:48 06 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:11:48 06 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 16:11:48 06 Mar 2017 UTC 19:43:48 06 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 15803 19:43:48 06 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:46:49 06 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 16024 19:46:49 06 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:46:49 06 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:46:49 06 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:46:49 06 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:46:49 06 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170306094649 ] 19:46:49 06 Mar 2017 UTC: INFO: Base.py(1333): PID:16031 19:46:49 06 Mar 2017 UTC: INFO: Base.py(1375): Started processing 19:46:49 06 Mar 2017 UTC 19:46:49 06 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:46:50 06 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:46:50 06 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:46:50 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:46:50 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:332 calls_made:1 call_cycle:0 19:46:50 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:46:50 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:332 calls_made:1 call_cycle:0 19:46:50 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:46:50 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:332 calls_made:1 call_cycle:0 19:46:50 06 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:332 calls_made:1 call_cycle:0 2244.4750 -15740.1740 03/06/17 19:41:37 UTC) to sdrifter@soest.hawaii.edu 19:46:51 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:332 calls_made:1 call_cycle:0 19:46:51 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:46:51 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:332 calls_made:1 call_cycle:0 19:46:51 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:46:51 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:332 calls_made:1 call_cycle:0 19:46:51 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:46:51 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:332 calls_made:1 call_cycle:0 19:46:51 06 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:46:51 06 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:46:56 06 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:46:57 06 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:46:57 06 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:46:57 06 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:46:57 06 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:46:57 06 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:46:58 06 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0332lz 19:46:58 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0332lz.x00 19:46:58 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0332lz.x01 19:46:58 06 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0332lz.r in process_file_group 19:46:58 06 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260332.log 19:46:58 06 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:46:58 06 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0332dz 19:46:58 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0332dz.x00 19:46:58 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0332dz.x01 19:46:58 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0332dz.x02 19:46:58 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0332dz.x03 19:46:58 06 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0332dz.r in process_file_group 19:46:59 06 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [332] 19:46:59 06 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [332] 19:46:59 06 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260332) for profiles 19:46:59 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 19:46:59 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/648) 646:648 to QC_BAD because CT out of water 19:46:59 06 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.132m) 19:46:59 06 Mar 2017 UTC: INFO: QC.py(365): Changed (10/648) 3 193 208 219 220 242 247 266 267 284 to QC_PROBABLY_BAD because raw temperature spikes 19:46:59 06 Mar 2017 UTC: INFO: QC.py(377): Changed (1/648) 647 to QC_BAD because raw salinity below bound 19:46:59 06 Mar 2017 UTC: INFO: QC.py(408): Changed (5/648) 190 193 208 284 506 to QC_PROBABLY_BAD because raw conductivity spikes 19:46:59 06 Mar 2017 UTC: INFO: QC.py(180): Changed (10/648) 3 193 208 219 220 242 247 266 267 284 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:46:59 06 Mar 2017 UTC: INFO: QC.py(180): Changed (2/648) 190 506 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 19:46:59 06 Mar 2017 UTC: INFO: QC.py(180): Changed (2/648) 646 648 to QC_BAD because changed raw cond implies changed raw salinity 19:46:59 06 Mar 2017 UTC: INFO: QC.py(365): Changed (10/648) 3 193 208 219 220 242 247 266 267 284 to QC_INTERPOLATED because temperature spikes 19:46:59 06 Mar 2017 UTC: INFO: QC.py(377): Changed (1/648) 647 to QC_BAD because salinity below bound 19:46:59 06 Mar 2017 UTC: INFO: QC.py(408): Changed (5/648) 190 193 208 284 506 to QC_INTERPOLATED because conductivity spikes 19:46:59 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/648) 240:244 to QC_BAD because slow apogee CT flow 19:46:59 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/648) 1:6 to QC_BAD because prior to dive start 19:46:59 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/648) 1:6 240:244 646:648 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:46:59 06 Mar 2017 UTC: INFO: QC.py(180): Changed (14/648) 1:6 240:244 646:648 to QC_BAD because changed corrected salin implies changed speed 19:47:00 06 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:47:00 06 Mar 2017 UTC: INFO: QC.py(180): Changed (8/648) 193 208 219 220 247 266 267 284 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 19:47:00 06 Mar 2017 UTC: INFO: QC.py(180): Changed (2/648) 190 506 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 19:47:00 06 Mar 2017 UTC: INFO: QC.py(180): Changed (8/648) 193 208 219 220 247 266 267 284 to QC_INTERPOLATED because changed corrected temp implies changed speed 19:47:00 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.01 cm/s 19:47:00 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.29 cm/s 19:47:00 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:47:00 06 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (189/648) 130 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:47:00 06 Mar 2017 UTC: INFO: QC.py(180): Changed (2/648) 3 266 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 19:47:00 06 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (189/648) 130 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 19:47:00 06 Mar 2017 UTC: INFO: QC.py(180): Changed (2/648) 3 266 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 19:47:00 06 Mar 2017 UTC: INFO: QC.py(180): Changed (14/648) 1:6 240:244 646:648 to QC_BAD because changed salinity implies changed optode oxygen 19:47:00 06 Mar 2017 UTC: INFO: QC.py(180): Changed (1/648) 506 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 19:47:00 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:47:00 06 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:47:00 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 19:47:00 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 332: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.16% reduction 19:47:01 06 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.332 19:47:01 06 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:47:01 06 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:47:01 06 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:47:01 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 19:47:01 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 19:49:41 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 19:49:42 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 19:49:42 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 19:50:14 06 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:50:14 06 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:50:14 06 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:50:14 06 Mar 2017 UTC /home/sg626/p6260332.log /home/sg626/p6260332.eng /home/sg626/p6260332.asc /home/sg626/p6260332.pro /home/sg626/p6260332.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 19:50:14 06 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:50:14 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:50:14 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:50:14 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:50:14 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:50:14 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:50:14 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:50:14 06 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:50:14 06 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:50:14 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:50:14 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:50:14 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:50:14 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:50:14 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:50:14 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:50:14 06 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:50:14 06 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:50:14 06 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:50:14 06 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:50:14 06 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:50:14 06 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:50:14 06 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:50:14 06 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:50:14 06 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 19:50:14 06 Mar 2017 UTC 23:25:12 06 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 29560 23:25:12 06 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 23:28:12 06 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 29777 23:28:12 06 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:28:12 06 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:28:12 06 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:28:12 06 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:28:12 06 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170306132811 ] 23:28:12 06 Mar 2017 UTC: INFO: Base.py(1333): PID:29784 23:28:12 06 Mar 2017 UTC: INFO: Base.py(1375): Started processing 23:28:12 06 Mar 2017 UTC 23:28:12 06 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:28:13 06 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:28:13 06 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:28:13 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:28:13 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:333 calls_made:1 call_cycle:0 23:28:13 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:28:13 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:333 calls_made:1 call_cycle:0 23:28:13 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:28:13 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:333 calls_made:1 call_cycle:0 23:28:13 06 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:333 calls_made:1 call_cycle:0 2243.8640 -15741.8070 03/06/17 23:23:00 UTC) to sdrifter@soest.hawaii.edu 23:28:13 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:333 calls_made:1 call_cycle:0 23:28:13 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:28:13 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:333 calls_made:1 call_cycle:0 23:28:13 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:28:13 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:333 calls_made:1 call_cycle:0 23:28:13 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:28:13 06 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:333 calls_made:1 call_cycle:0 23:28:13 06 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:28:13 06 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:28:18 06 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:28:19 06 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:28:19 06 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:28:19 06 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:28:19 06 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:28:19 06 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:28:21 06 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0333lz 23:28:21 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0333lz.x00 23:28:21 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0333lz.x01 23:28:21 06 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0333lz.r in process_file_group 23:28:21 06 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260333.log 23:28:21 06 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:28:21 06 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0333dz 23:28:21 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0333dz.x00 23:28:21 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0333dz.x01 23:28:21 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0333dz.x02 23:28:21 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0333dz.x03 23:28:21 06 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0333dz.x04 23:28:21 06 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0333dz.r in process_file_group 23:28:21 06 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [333] 23:28:21 06 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [333] 23:28:21 06 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260333) for profiles 23:28:21 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 23:28:21 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/668) 667 668 to QC_BAD because CT out of water 23:28:21 06 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.106m) 23:28:21 06 Mar 2017 UTC: INFO: QC.py(365): Changed (14/668) 196 205 222 228 229 256 257 260 263 267 268 280 ... to QC_PROBABLY_BAD because raw temperature spikes 23:28:21 06 Mar 2017 UTC: INFO: QC.py(377): Changed (1/668) 668 to QC_BAD because raw salinity below bound 23:28:21 06 Mar 2017 UTC: INFO: QC.py(408): Changed (15/668) 196 205 219 222 225 228 256 257 260 263 265:267 ... to QC_PROBABLY_BAD because raw conductivity spikes 23:28:21 06 Mar 2017 UTC: INFO: QC.py(180): Changed (14/668) 196 205 222 228 229 256 257 260 263 267 268 280 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 23:28:21 06 Mar 2017 UTC: INFO: QC.py(180): Changed (4/668) 219 225 265 266 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 23:28:21 06 Mar 2017 UTC: INFO: QC.py(180): Changed (1/668) 667 to QC_BAD because changed raw cond implies changed raw salinity 23:28:21 06 Mar 2017 UTC: INFO: QC.py(365): Changed (14/668) 196 205 222 228 229 256 257 260 263 267 268 280 ... to QC_INTERPOLATED because temperature spikes 23:28:21 06 Mar 2017 UTC: INFO: QC.py(377): Changed (1/668) 668 to QC_BAD because salinity below bound 23:28:21 06 Mar 2017 UTC: INFO: QC.py(408): Changed (15/668) 196 205 219 222 225 228 256 257 260 263 265:267 ... to QC_INTERPOLATED because conductivity spikes 23:28:21 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/668) 244:248 to QC_BAD because slow apogee CT flow 23:28:21 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/668) 1:6 to QC_BAD because prior to dive start 23:28:21 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/668) 1:6 244:248 667 668 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 23:28:21 06 Mar 2017 UTC: INFO: QC.py(180): Changed (13/668) 1:6 244:248 667 668 to QC_BAD because changed corrected salin implies changed speed 23:28:22 06 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 23:28:22 06 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 333 interp_salinity data_points in_between 355 375 % suspect thermal-inertia points 370 371 373 23:28:22 06 Mar 2017 UTC: INFO: QC.py(180): Changed (13/668) 196 205 222 228 229 256 257 260 263 267 268 280 ... to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 23:28:22 06 Mar 2017 UTC: INFO: QC.py(180): Changed (4/668) 219 225 265 266 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 23:28:22 06 Mar 2017 UTC: INFO: QC.py(180): Changed (13/668) 196 205 222 228 229 256 257 260 263 267 268 280 ... to QC_INTERPOLATED because changed corrected temp implies changed speed 23:28:22 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.90 cm/s 23:28:22 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.33 cm/s 23:28:22 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 23:28:22 06 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (189/668) 135 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 23:28:22 06 Mar 2017 UTC: INFO: QC.py(180): Changed (4/668) 196 256 291 667 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 23:28:22 06 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (189/668) 135 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 23:28:22 06 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/668) 668 to QC_BAD because bad aa4330 oyxgen 23:28:22 06 Mar 2017 UTC: INFO: QC.py(180): Changed (4/668) 196 256 291 667 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 23:28:22 06 Mar 2017 UTC: INFO: QC.py(180): Changed (12/668) 1:6 244:248 667 to QC_BAD because changed salinity implies changed optode oxygen 23:28:22 06 Mar 2017 UTC: INFO: QC.py(180): Changed (1/668) 266 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 23:28:22 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 23:28:22 06 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 23:28:22 06 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 23:28:22 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 333: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.95% reduction 23:28:23 06 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.333 23:28:23 06 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:28:23 06 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:28:23 06 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:28:23 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 23:28:23 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 23:31:03 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 23:31:04 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 23:31:04 06 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 23:31:35 06 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:31:35 06 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:31:35 06 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:31:35 06 Mar 2017 UTC /home/sg626/p6260333.log /home/sg626/p6260333.eng /home/sg626/p6260333.asc /home/sg626/p6260333.pro /home/sg626/p6260333.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 23:31:35 06 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:31:35 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:31:35 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:31:35 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:31:35 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:31:35 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:31:35 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:31:35 06 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:31:35 06 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:31:35 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:31:35 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:31:35 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:31:35 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:31:35 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:31:35 06 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:31:35 06 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:31:35 06 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:31:35 06 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:31:35 06 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:31:35 06 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:31:35 06 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:31:35 06 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:31:35 06 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:31:35 06 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 23:31:35 06 Mar 2017 UTC 03:06:32 07 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9821 03:06:32 07 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:09:26 07 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 10036 03:09:26 07 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:09:26 07 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:09:26 07 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:09:26 07 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:09:26 07 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170306170925 ] 03:09:26 07 Mar 2017 UTC: INFO: Base.py(1333): PID:10045 03:09:26 07 Mar 2017 UTC: INFO: Base.py(1375): Started processing 03:09:26 07 Mar 2017 UTC 03:09:26 07 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:09:27 07 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:09:27 07 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:09:27 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:09:27 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:334 calls_made:1 call_cycle:0 03:09:27 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:09:27 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:334 calls_made:1 call_cycle:0 03:09:27 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:09:27 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:334 calls_made:1 call_cycle:0 03:09:27 07 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:334 calls_made:1 call_cycle:0 2243.4310 -15743.3910 03/07/17 03:04:19 UTC) to sdrifter@soest.hawaii.edu 03:09:27 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:334 calls_made:1 call_cycle:0 03:09:27 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:09:27 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:334 calls_made:1 call_cycle:0 03:09:27 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:09:27 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:334 calls_made:1 call_cycle:0 03:09:27 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:09:27 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:334 calls_made:1 call_cycle:0 03:09:27 07 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:09:27 07 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:09:32 07 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:09:33 07 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:09:33 07 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:09:33 07 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:09:33 07 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:09:33 07 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:09:35 07 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0334lz 03:09:35 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0334lz.x00 03:09:35 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0334lz.x01 03:09:35 07 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0334lz.r in process_file_group 03:09:35 07 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260334.log 03:09:35 07 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:09:35 07 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0334dz 03:09:35 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0334dz.x00 03:09:35 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0334dz.x01 03:09:35 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0334dz.x02 03:09:35 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0334dz.x03 03:09:35 07 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0334dz.r in process_file_group 03:09:35 07 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [334] 03:09:35 07 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [334] 03:09:35 07 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260334) for profiles 03:09:35 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 03:09:36 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/661) 659:661 to QC_BAD because CT out of water 03:09:36 07 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.112m) 03:09:36 07 Mar 2017 UTC: INFO: QC.py(365): Changed (21/661) 2 4 5 203 211 212 218 219 222 223 226 229 230 236 ... to QC_PROBABLY_BAD because raw temperature spikes 03:09:36 07 Mar 2017 UTC: INFO: QC.py(377): Changed (2/661) 660 661 to QC_BAD because raw salinity below bound 03:09:36 07 Mar 2017 UTC: INFO: QC.py(408): Changed (15/661) 5 211 212 218 219 222 223 226 229 230 236 243 272 ... to QC_PROBABLY_BAD because raw conductivity spikes 03:09:36 07 Mar 2017 UTC: INFO: QC.py(180): Changed (20/661) 2 4 5 203 211 212 218 219 222 223 226 229 230 236 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 03:09:36 07 Mar 2017 UTC: INFO: QC.py(180): Changed (1/661) 659 to QC_BAD because changed raw cond implies changed raw salinity 03:09:36 07 Mar 2017 UTC: INFO: QC.py(365): Changed (21/661) 2 4 5 203 211 212 218 219 222 223 226 229 230 236 ... to QC_INTERPOLATED because temperature spikes 03:09:36 07 Mar 2017 UTC: INFO: QC.py(377): Changed (2/661) 660 661 to QC_BAD because salinity below bound 03:09:36 07 Mar 2017 UTC: INFO: QC.py(408): Changed (15/661) 5 211 212 218 219 222 223 226 229 230 236 243 272 ... to QC_INTERPOLATED because conductivity spikes 03:09:36 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/661) 250:254 to QC_BAD because slow apogee CT flow 03:09:36 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/661) 1:7 to QC_BAD because prior to dive start 03:09:36 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/661) 1:7 250:254 659:661 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:09:36 07 Mar 2017 UTC: INFO: QC.py(180): Changed (15/661) 1:7 250:254 659:661 to QC_BAD because changed corrected salin implies changed speed 03:09:36 07 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 03:09:36 07 Mar 2017 UTC: INFO: QC.py(180): Changed (16/661) 203 211 212 218 219 222 223 226 229 230 236 243 ... to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 03:09:36 07 Mar 2017 UTC: INFO: QC.py(180): Changed (16/661) 203 211 212 218 219 222 223 226 229 230 236 243 ... to QC_INTERPOLATED because changed corrected temp implies changed speed 03:09:36 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.85 cm/s 03:09:36 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.01 cm/s 03:09:36 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:09:36 07 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (191/661) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:09:36 07 Mar 2017 UTC: INFO: QC.py(180): Changed (8/661) 2 4 5 211 226 236 659 660 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:09:36 07 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (191/661) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 03:09:36 07 Mar 2017 UTC: INFO: QC.py(180): Changed (8/661) 2 4 5 211 226 236 659 660 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 03:09:36 07 Mar 2017 UTC: INFO: QC.py(180): Changed (15/661) 1:7 250:254 659:661 to QC_BAD because changed salinity implies changed optode oxygen 03:09:36 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:09:36 07 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:09:36 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 03:09:37 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 334: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.27% reduction 03:09:37 07 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.334 03:09:37 07 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:09:37 07 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:09:37 07 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:09:37 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 03:09:37 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 03:12:21 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 03:12:22 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 03:12:22 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 03:12:53 07 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:12:53 07 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:12:53 07 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:12:53 07 Mar 2017 UTC /home/sg626/p6260334.log /home/sg626/p6260334.eng /home/sg626/p6260334.asc /home/sg626/p6260334.pro /home/sg626/p6260334.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 03:12:53 07 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:12:53 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:12:53 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:12:53 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:12:53 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:12:53 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:12:53 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:12:53 07 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:12:53 07 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:12:53 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:12:53 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:12:53 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:12:53 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:12:53 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:12:53 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:12:53 07 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:12:53 07 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:12:53 07 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:12:53 07 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:12:53 07 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:12:53 07 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:12:53 07 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:12:53 07 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:12:53 07 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 03:12:53 07 Mar 2017 UTC 06:55:13 07 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 22437 06:55:13 07 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:58:10 07 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 22651 06:58:10 07 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:58:10 07 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 06:58:10 07 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 06:58:10 07 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:58:10 07 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170306205809 ] 06:58:10 07 Mar 2017 UTC: INFO: Base.py(1333): PID:22658 06:58:10 07 Mar 2017 UTC: INFO: Base.py(1375): Started processing 06:58:10 07 Mar 2017 UTC 06:58:10 07 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 06:58:11 07 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 06:58:11 07 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:58:11 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:58:11 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:335 calls_made:1 call_cycle:0 06:58:11 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:58:11 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:335 calls_made:1 call_cycle:0 06:58:11 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:58:11 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:335 calls_made:1 call_cycle:0 06:58:11 07 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:335 calls_made:1 call_cycle:0 2242.7740 -15744.9110 03/07/17 06:52:49 UTC) to sdrifter@soest.hawaii.edu 06:58:11 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:335 calls_made:1 call_cycle:0 06:58:11 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:58:11 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:335 calls_made:1 call_cycle:0 06:58:11 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:58:11 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:335 calls_made:1 call_cycle:0 06:58:11 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:58:11 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:335 calls_made:1 call_cycle:0 06:58:11 07 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:58:11 07 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:58:16 07 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:58:17 07 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:58:17 07 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 06:58:17 07 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:58:17 07 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:58:17 07 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 06:58:19 07 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0335lz 06:58:19 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0335lz.x00 06:58:19 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0335lz.x01 06:58:19 07 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0335lz.r in process_file_group 06:58:19 07 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260335.log 06:58:19 07 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 06:58:19 07 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0335dz 06:58:19 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0335dz.x00 06:58:19 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0335dz.x01 06:58:19 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0335dz.x02 06:58:19 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0335dz.x03 06:58:19 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0335dz.x04 06:58:19 07 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0335dz.r in process_file_group 06:58:19 07 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [335] 06:58:19 07 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [335] 06:58:19 07 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260335) for profiles 06:58:19 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 06:58:19 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/674) 674 to QC_BAD because CT out of water 06:58:19 07 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.062m) 06:58:19 07 Mar 2017 UTC: INFO: QC.py(365): Changed (20/674) 2 4 215 226 230 235 237 238 248 249 255 265 269:271 ... to QC_PROBABLY_BAD because raw temperature spikes 06:58:19 07 Mar 2017 UTC: INFO: QC.py(408): Changed (19/674) 3 215 218 219 226 230 237 238 248 249 258 265 269 ... to QC_PROBABLY_BAD because raw conductivity spikes 06:58:19 07 Mar 2017 UTC: INFO: QC.py(180): Changed (20/674) 2 4 215 226 230 235 237 238 248 249 255 265 269:271 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 06:58:19 07 Mar 2017 UTC: INFO: QC.py(180): Changed (4/674) 3 218 219 258 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 06:58:19 07 Mar 2017 UTC: INFO: QC.py(180): Changed (1/674) 674 to QC_BAD because changed raw cond implies changed raw salinity 06:58:19 07 Mar 2017 UTC: INFO: QC.py(365): Changed (20/674) 2 4 215 226 230 235 237 238 248 249 255 265 269:271 ... to QC_INTERPOLATED because temperature spikes 06:58:19 07 Mar 2017 UTC: INFO: QC.py(408): Changed (19/674) 3 215 218 219 226 230 237 238 248 249 258 265 269 ... to QC_INTERPOLATED because conductivity spikes 06:58:19 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/674) 267:271 to QC_BAD because slow apogee CT flow 06:58:19 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/674) 1:6 to QC_BAD because prior to dive start 06:58:19 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/674) 1:6 267:271 674 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 06:58:19 07 Mar 2017 UTC: INFO: QC.py(180): Changed (12/674) 1:6 267:271 674 to QC_BAD because changed corrected salin implies changed speed 06:58:20 07 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 06:58:20 07 Mar 2017 UTC: INFO: QC.py(180): Changed (15/674) 215 226 230 235 237 238 248 249 255 265 273 274 ... to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 06:58:20 07 Mar 2017 UTC: INFO: QC.py(180): Changed (3/674) 218 219 258 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 06:58:20 07 Mar 2017 UTC: INFO: QC.py(180): Changed (15/674) 215 226 230 235 237 238 248 249 255 265 273 274 ... to QC_INTERPOLATED because changed corrected temp implies changed speed 06:58:20 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.01 cm/s 06:58:20 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.87 cm/s 06:58:20 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 06:58:20 07 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (197/674) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 06:58:20 07 Mar 2017 UTC: INFO: QC.py(180): Changed (5/674) 2 4 226 271 291 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 06:58:20 07 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (197/674) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 06:58:20 07 Mar 2017 UTC: INFO: QC.py(180): Changed (5/674) 2 4 226 271 291 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 06:58:20 07 Mar 2017 UTC: INFO: QC.py(180): Changed (12/674) 1:6 267:271 674 to QC_BAD because changed salinity implies changed optode oxygen 06:58:20 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 06:58:20 07 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 06:58:20 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 06:58:20 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 335: Data set size for profile, binned and kkyy files reduced by 12 points, a 1.78% reduction 06:58:21 07 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.335 06:58:21 07 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:58:21 07 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:58:21 07 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:58:21 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 06:58:21 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:01:03 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 07:01:04 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:01:04 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:01:36 07 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:01:36 07 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:01:36 07 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:01:36 07 Mar 2017 UTC /home/sg626/p6260335.log /home/sg626/p6260335.eng /home/sg626/p6260335.asc /home/sg626/p6260335.pro /home/sg626/p6260335.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:01:36 07 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:01:36 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:01:36 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:01:36 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:01:36 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:01:36 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:01:36 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:01:36 07 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:01:36 07 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:01:36 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:01:36 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:01:36 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:01:36 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:01:36 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:01:36 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:01:36 07 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:01:36 07 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:01:36 07 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:01:36 07 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:01:36 07 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:01:36 07 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:01:36 07 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:01:36 07 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:01:36 07 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 07:01:36 07 Mar 2017 UTC 10:39:02 07 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 3279 10:39:02 07 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:41:47 07 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 3416 10:41:47 07 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:41:47 07 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:41:47 07 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:41:47 07 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:41:47 07 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170307004146 ] 10:41:47 07 Mar 2017 UTC: INFO: Base.py(1333): PID:3423 10:41:47 07 Mar 2017 UTC: INFO: Base.py(1375): Started processing 10:41:47 07 Mar 2017 UTC 10:41:47 07 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:41:48 07 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:41:48 07 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:41:48 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:41:48 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:336 calls_made:2 call_cycle:0 10:41:48 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:41:48 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:336 calls_made:2 call_cycle:0 10:41:48 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:41:48 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:336 calls_made:2 call_cycle:0 10:41:48 07 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:336 calls_made:2 call_cycle:0 2242.3090 -15746.6690 03/07/17 10:34:07 UTC) to sdrifter@soest.hawaii.edu 10:42:18 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:336 calls_made:2 call_cycle:0 10:42:18 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:42:18 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:336 calls_made:2 call_cycle:0 10:42:18 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:42:18 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:336 calls_made:2 call_cycle:0 10:42:18 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:42:18 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:336 calls_made:2 call_cycle:0 10:42:18 07 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:42:18 07 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:42:23 07 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:42:24 07 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:42:24 07 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:42:24 07 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:42:24 07 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:42:24 07 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:42:26 07 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0336lz 10:42:26 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0336lz.x00 10:42:26 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0336lz.x01 10:42:26 07 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0336lz.r in process_file_group 10:42:26 07 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260336.log 10:42:26 07 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:42:26 07 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0336dz 10:42:26 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0336dz.x00 10:42:26 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0336dz.x01 10:42:26 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0336dz.x02 10:42:26 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0336dz.x03 10:42:26 07 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0336dz.r in process_file_group 10:42:27 07 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [336] 10:42:27 07 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [336] 10:42:27 07 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260336) for profiles 10:42:27 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 10:42:27 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/612) 611 612 to QC_BAD because CT out of water 10:42:27 07 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.032m) 10:42:27 07 Mar 2017 UTC: INFO: QC.py(365): Changed (11/612) 2 214 226 245 270 277 282 285 286 293 294 to QC_PROBABLY_BAD because raw temperature spikes 10:42:27 07 Mar 2017 UTC: INFO: QC.py(408): Changed (9/612) 214 226 245 270 277 285 286 293 294 to QC_PROBABLY_BAD because raw conductivity spikes 10:42:27 07 Mar 2017 UTC: INFO: QC.py(180): Changed (11/612) 2 214 226 245 270 277 282 285 286 293 294 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 10:42:27 07 Mar 2017 UTC: INFO: QC.py(180): Changed (2/612) 611 612 to QC_BAD because changed raw cond implies changed raw salinity 10:42:27 07 Mar 2017 UTC: INFO: QC.py(365): Changed (11/612) 2 214 226 245 270 277 282 285 286 293 294 to QC_INTERPOLATED because temperature spikes 10:42:27 07 Mar 2017 UTC: INFO: QC.py(408): Changed (9/612) 214 226 245 270 277 285 286 293 294 to QC_INTERPOLATED because conductivity spikes 10:42:27 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/612) 259:263 to QC_BAD because slow apogee CT flow 10:42:27 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/612) 1:6 to QC_BAD because prior to dive start 10:42:27 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/612) 1:6 259:263 611 612 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:42:27 07 Mar 2017 UTC: INFO: QC.py(180): Changed (13/612) 1:6 259:263 611 612 to QC_BAD because changed corrected salin implies changed speed 10:42:28 07 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 10:42:28 07 Mar 2017 UTC: INFO: QC.py(180): Changed (10/612) 214 226 245 270 277 282 285 286 293 294 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 10:42:28 07 Mar 2017 UTC: INFO: QC.py(180): Changed (10/612) 214 226 245 270 277 282 285 286 293 294 to QC_INTERPOLATED because changed corrected temp implies changed speed 10:42:28 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.27 cm/s 10:42:28 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.95 cm/s 10:42:28 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:42:28 07 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (199/612) 139 140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:42:28 07 Mar 2017 UTC: INFO: QC.py(180): Changed (3/612) 2 226 286 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 10:42:28 07 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (199/612) 139 140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 10:42:28 07 Mar 2017 UTC: INFO: QC.py(180): Changed (3/612) 2 226 286 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 10:42:28 07 Mar 2017 UTC: INFO: QC.py(180): Changed (13/612) 1:6 259:263 611 612 to QC_BAD because changed salinity implies changed optode oxygen 10:42:28 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:42:28 07 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:42:28 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 10:42:28 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 336: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.12% reduction 10:42:28 07 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.336 10:42:28 07 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:42:28 07 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:42:28 07 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:42:28 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 10:42:28 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 10:45:11 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 10:45:12 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 10:45:12 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 10:45:44 07 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:45:44 07 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:45:44 07 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 10:45:44 07 Mar 2017 UTC /home/sg626/p6260336.log /home/sg626/p6260336.eng /home/sg626/p6260336.asc /home/sg626/p6260336.pro /home/sg626/p6260336.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 10:45:44 07 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:45:44 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:45:44 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:45:44 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:45:44 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:45:44 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:45:44 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:45:44 07 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:45:44 07 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:45:44 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:45:44 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:45:44 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:45:44 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:45:44 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:45:44 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:45:44 07 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:45:44 07 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:45:44 07 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:45:44 07 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:45:44 07 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:45:44 07 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:45:44 07 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:45:44 07 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:45:44 07 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 10:45:44 07 Mar 2017 UTC 14:25:40 07 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9586 14:25:40 07 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:28:43 07 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9713 14:28:43 07 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:28:43 07 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 14:28:43 07 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 14:28:43 07 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:28:43 07 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170307042843 ] 14:28:43 07 Mar 2017 UTC: INFO: Base.py(1333): PID:9720 14:28:43 07 Mar 2017 UTC: INFO: Base.py(1375): Started processing 14:28:43 07 Mar 2017 UTC 14:28:43 07 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 14:28:44 07 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 14:28:44 07 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:28:44 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:28:44 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:337 calls_made:1 call_cycle:0 14:28:44 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:28:44 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:337 calls_made:1 call_cycle:0 14:28:44 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:28:44 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:337 calls_made:1 call_cycle:0 14:28:44 07 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:337 calls_made:1 call_cycle:0 2242.0190 -15748.3350 03/07/17 14:23:30 UTC) to sdrifter@soest.hawaii.edu 14:28:44 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:337 calls_made:1 call_cycle:0 14:28:44 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:28:45 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:337 calls_made:1 call_cycle:0 14:28:45 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:28:45 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:337 calls_made:1 call_cycle:0 14:28:45 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:28:45 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:337 calls_made:1 call_cycle:0 14:28:45 07 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:28:45 07 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:28:50 07 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:28:51 07 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:28:51 07 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 14:28:51 07 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:28:51 07 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:28:51 07 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 14:28:52 07 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0337lz 14:28:52 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0337lz.x00 14:28:52 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0337lz.x01 14:28:52 07 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0337lz.r in process_file_group 14:28:52 07 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260337.log 14:28:52 07 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 14:28:52 07 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0337dz 14:28:52 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0337dz.x00 14:28:52 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0337dz.x01 14:28:52 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0337dz.x02 14:28:52 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0337dz.x03 14:28:52 07 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0337dz.r in process_file_group 14:28:53 07 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [337] 14:28:53 07 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [337] 14:28:53 07 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260337) for profiles 14:28:53 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 14:28:53 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/663) 663 to QC_BAD because CT out of water 14:28:53 07 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.071m) 14:28:53 07 Mar 2017 UTC: INFO: QC.py(365): Changed (8/663) 2 223 228 261 283 286 293 294 to QC_PROBABLY_BAD because raw temperature spikes 14:28:53 07 Mar 2017 UTC: INFO: QC.py(408): Changed (5/663) 228 261 283 286 293 to QC_PROBABLY_BAD because raw conductivity spikes 14:28:53 07 Mar 2017 UTC: INFO: QC.py(180): Changed (8/663) 2 223 228 261 283 286 293 294 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:28:53 07 Mar 2017 UTC: INFO: QC.py(180): Changed (1/663) 663 to QC_BAD because changed raw cond implies changed raw salinity 14:28:53 07 Mar 2017 UTC: INFO: QC.py(365): Changed (8/663) 2 223 228 261 283 286 293 294 to QC_INTERPOLATED because temperature spikes 14:28:53 07 Mar 2017 UTC: INFO: QC.py(408): Changed (5/663) 228 261 283 286 293 to QC_INTERPOLATED because conductivity spikes 14:28:53 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/663) 259:263 to QC_BAD because slow apogee CT flow 14:28:53 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/663) 1:6 to QC_BAD because prior to dive start 14:28:53 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/663) 1:6 259:263 663 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:28:53 07 Mar 2017 UTC: INFO: QC.py(180): Changed (12/663) 1:6 259:263 663 to QC_BAD because changed corrected salin implies changed speed 14:28:54 07 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:28:54 07 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 337 interp_salinity data_points in_between 355 389 % suspect thermal-inertia points 362 14:28:54 07 Mar 2017 UTC: INFO: QC.py(180): Changed (6/663) 223 228 283 286 293 294 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 14:28:54 07 Mar 2017 UTC: INFO: QC.py(180): Changed (6/663) 223 228 283 286 293 294 to QC_INTERPOLATED because changed corrected temp implies changed speed 14:28:54 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.62 cm/s 14:28:54 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.85 cm/s 14:28:54 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:28:54 07 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (197/663) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:28:54 07 Mar 2017 UTC: INFO: QC.py(180): Changed (3/663) 2 261 286 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 14:28:54 07 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (197/663) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 14:28:54 07 Mar 2017 UTC: INFO: QC.py(180): Changed (3/663) 2 261 286 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 14:28:54 07 Mar 2017 UTC: INFO: QC.py(180): Changed (12/663) 1:6 259:263 663 to QC_BAD because changed salinity implies changed optode oxygen 14:28:54 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:28:54 07 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:28:54 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 14:28:55 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 337: Data set size for profile, binned and kkyy files reduced by 12 points, a 1.81% reduction 14:28:55 07 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.337 14:28:55 07 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:28:55 07 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:28:55 07 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:28:55 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 14:28:55 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 14:31:39 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 14:31:40 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 14:31:40 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 14:32:12 07 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:32:12 07 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:32:12 07 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:32:12 07 Mar 2017 UTC /home/sg626/p6260337.log /home/sg626/p6260337.eng /home/sg626/p6260337.asc /home/sg626/p6260337.pro /home/sg626/p6260337.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 14:32:12 07 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:32:12 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:32:12 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:32:12 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:32:12 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:32:12 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:32:12 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:32:12 07 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:32:12 07 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:32:12 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:32:12 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:32:12 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:32:12 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:32:12 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:32:12 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:32:12 07 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:32:12 07 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:32:12 07 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:32:12 07 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:32:12 07 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:32:12 07 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:32:12 07 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:32:12 07 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:32:12 07 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 14:32:12 07 Mar 2017 UTC 18:13:38 07 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 16164 18:13:38 07 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 18:16:32 07 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 16271 18:16:32 07 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:16:32 07 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 18:16:32 07 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 18:16:32 07 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:16:32 07 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170307081631 ] 18:16:32 07 Mar 2017 UTC: INFO: Base.py(1333): PID:16278 18:16:32 07 Mar 2017 UTC: INFO: Base.py(1375): Started processing 18:16:32 07 Mar 2017 UTC 18:16:32 07 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 18:16:33 07 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 18:16:33 07 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:16:33 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:16:33 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:338 calls_made:1 call_cycle:0 18:16:33 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:16:33 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:338 calls_made:1 call_cycle:0 18:16:33 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:16:33 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:338 calls_made:1 call_cycle:0 18:16:33 07 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:338 calls_made:1 call_cycle:0 2241.4060 -15750.0740 03/07/17 18:11:26 UTC) to sdrifter@soest.hawaii.edu 18:16:33 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:338 calls_made:1 call_cycle:0 18:16:33 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:16:33 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:338 calls_made:1 call_cycle:0 18:16:33 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:16:33 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:338 calls_made:1 call_cycle:0 18:16:33 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:16:33 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:338 calls_made:1 call_cycle:0 18:16:33 07 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:16:33 07 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:16:38 07 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:16:39 07 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:16:39 07 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 18:16:39 07 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:16:39 07 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:16:39 07 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 18:16:41 07 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0338lz 18:16:41 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0338lz.x00 18:16:41 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0338lz.x01 18:16:41 07 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0338lz.r in process_file_group 18:16:41 07 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260338.log 18:16:41 07 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 18:16:41 07 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0338dz 18:16:41 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0338dz.x00 18:16:41 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0338dz.x01 18:16:41 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0338dz.x02 18:16:41 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0338dz.x03 18:16:41 07 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0338dz.r in process_file_group 18:16:41 07 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [338] 18:16:41 07 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [338] 18:16:41 07 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260338) for profiles 18:16:41 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 18:16:41 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/670) 670 to QC_BAD because CT out of water 18:16:41 07 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.054m) 18:16:41 07 Mar 2017 UTC: INFO: QC.py(365): Changed (12/670) 211 216 217 222 223 226 227 243 244 290 291 299 to QC_PROBABLY_BAD because raw temperature spikes 18:16:41 07 Mar 2017 UTC: INFO: QC.py(377): Changed (1/670) 670 to QC_BAD because raw salinity below bound 18:16:41 07 Mar 2017 UTC: INFO: QC.py(408): Changed (16/670) 211 216 217 222 223 226 227 240 243 244 283 284 ... to QC_PROBABLY_BAD because raw conductivity spikes 18:16:41 07 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <242 pt uncorrectable 975.2m SUSPECT weak conductivity anomaly n:-0.26 p:0.26> 18:16:41 07 Mar 2017 UTC: INFO: QC.py(180): Changed (12/670) 211 216 217 222 223 226 227 243 244 290 291 299 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 18:16:41 07 Mar 2017 UTC: INFO: QC.py(180): Changed (4/670) 240 283 284 286 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 18:16:41 07 Mar 2017 UTC: INFO: QC.py(365): Changed (12/670) 211 216 217 222 223 226 227 243 244 290 291 299 to QC_INTERPOLATED because temperature spikes 18:16:41 07 Mar 2017 UTC: INFO: QC.py(377): Changed (1/670) 670 to QC_BAD because salinity below bound 18:16:41 07 Mar 2017 UTC: INFO: QC.py(408): Changed (16/670) 211 216 217 222 223 226 227 240 243 244 283 284 ... to QC_INTERPOLATED because conductivity spikes 18:16:41 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/670) 265:269 to QC_BAD because slow apogee CT flow 18:16:41 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/670) 1:6 to QC_BAD because prior to dive start 18:16:41 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/670) 1:6 265:269 670 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 18:16:41 07 Mar 2017 UTC: INFO: QC.py(180): Changed (12/670) 1:6 265:269 670 to QC_BAD because changed corrected salin implies changed speed 18:16:42 07 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 18:16:42 07 Mar 2017 UTC: INFO: QC.py(180): Changed (12/670) 211 216 217 222 223 226 227 243 244 290 291 299 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 18:16:42 07 Mar 2017 UTC: INFO: QC.py(180): Changed (4/670) 240 283 284 286 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 18:16:42 07 Mar 2017 UTC: INFO: QC.py(180): Changed (12/670) 211 216 217 222 223 226 227 243 244 290 291 299 to QC_INTERPOLATED because changed corrected temp implies changed speed 18:16:42 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.88 cm/s 18:16:42 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.78 cm/s 18:16:42 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 18:16:42 07 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (198/670) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 18:16:42 07 Mar 2017 UTC: INFO: QC.py(180): Changed (4/670) 211 216 226 291 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 18:16:42 07 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (198/670) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 18:16:42 07 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/670) 3 to QC_BAD because bad aa4330 oyxgen 18:16:42 07 Mar 2017 UTC: INFO: QC.py(180): Changed (4/670) 211 216 226 291 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 18:16:42 07 Mar 2017 UTC: INFO: QC.py(180): Changed (11/670) 1 2 4:6 265:269 670 to QC_BAD because changed salinity implies changed optode oxygen 18:16:42 07 Mar 2017 UTC: INFO: QC.py(180): Changed (1/670) 286 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 18:16:42 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 18:16:42 07 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 18:16:42 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 18:16:43 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 338: Data set size for profile, binned and kkyy files reduced by 12 points, a 1.79% reduction 18:16:43 07 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.338 18:16:43 07 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:16:43 07 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:16:43 07 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:16:43 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 18:16:43 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 18:19:28 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 18:19:30 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 18:19:30 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 18:20:02 07 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:20:02 07 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:20:02 07 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:20:02 07 Mar 2017 UTC /home/sg626/p6260338.log /home/sg626/p6260338.eng /home/sg626/p6260338.asc /home/sg626/p6260338.pro /home/sg626/p6260338.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 18:20:02 07 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:20:02 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:20:02 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:20:02 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:20:02 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:20:02 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:20:02 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:20:02 07 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:20:02 07 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:20:02 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:20:02 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:20:02 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:20:02 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:20:02 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:20:02 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:20:02 07 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:20:02 07 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 18:20:02 07 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 18:20:02 07 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 18:20:02 07 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 18:20:02 07 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:20:02 07 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:20:02 07 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:20:02 07 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 18:20:02 07 Mar 2017 UTC 22:06:42 07 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 22293 22:06:42 07 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:09:52 07 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 22423 22:09:52 07 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:09:52 07 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:09:52 07 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:09:52 07 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:09:52 07 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170307120951 ] 22:09:52 07 Mar 2017 UTC: INFO: Base.py(1333): PID:22431 22:09:52 07 Mar 2017 UTC: INFO: Base.py(1375): Started processing 22:09:52 07 Mar 2017 UTC 22:09:52 07 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:09:53 07 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:09:53 07 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:09:53 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:09:53 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:339 calls_made:1 call_cycle:0 22:09:53 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:09:53 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:339 calls_made:1 call_cycle:0 22:09:53 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:09:53 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:339 calls_made:1 call_cycle:0 22:09:53 07 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:339 calls_made:1 call_cycle:0 2240.9280 -15752.1370 03/07/17 22:04:30 UTC) to sdrifter@soest.hawaii.edu 22:09:53 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:339 calls_made:1 call_cycle:0 22:09:53 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:09:53 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:339 calls_made:1 call_cycle:0 22:09:53 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:09:53 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:339 calls_made:1 call_cycle:0 22:09:53 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:09:53 07 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:339 calls_made:1 call_cycle:0 22:09:53 07 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:09:53 07 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:09:58 07 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:09:59 07 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:09:59 07 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:09:59 07 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:09:59 07 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:09:59 07 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:10:01 07 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0339lz 22:10:01 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0339lz.x00 22:10:01 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0339lz.x01 22:10:01 07 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0339lz.r in process_file_group 22:10:01 07 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260339.log 22:10:01 07 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 22:10:01 07 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0339dz 22:10:01 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0339dz.x00 22:10:01 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0339dz.x01 22:10:01 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0339dz.x02 22:10:01 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0339dz.x03 22:10:01 07 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0339dz.x04 22:10:01 07 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0339dz.r in process_file_group 22:10:01 07 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [339] 22:10:01 07 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [339] 22:10:02 07 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260339) for profiles 22:10:02 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 22:10:02 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/701) 700 701 to QC_BAD because CT out of water 22:10:02 07 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.050m) 22:10:02 07 Mar 2017 UTC: INFO: QC.py(365): Changed (3/701) 228 256 700 to QC_PROBABLY_BAD because raw temperature spikes 22:10:02 07 Mar 2017 UTC: INFO: QC.py(377): Changed (2/701) 700 701 to QC_BAD because raw salinity below bound 22:10:02 07 Mar 2017 UTC: INFO: QC.py(408): Changed (3/701) 228 256 264 to QC_PROBABLY_BAD because raw conductivity spikes 22:10:02 07 Mar 2017 UTC: INFO: QC.py(180): Changed (2/701) 228 256 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 22:10:02 07 Mar 2017 UTC: INFO: QC.py(180): Changed (1/701) 264 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 22:10:02 07 Mar 2017 UTC: INFO: QC.py(365): Changed (3/701) 228 256 700 to QC_INTERPOLATED because temperature spikes 22:10:02 07 Mar 2017 UTC: INFO: QC.py(377): Changed (2/701) 700 701 to QC_BAD because salinity below bound 22:10:02 07 Mar 2017 UTC: INFO: QC.py(408): Changed (3/701) 228 256 264 to QC_INTERPOLATED because conductivity spikes 22:10:02 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/701) 259:263 to QC_BAD because slow apogee CT flow 22:10:02 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/701) 1:6 to QC_BAD because prior to dive start 22:10:02 07 Mar 2017 UTC: INFO: QC.py(488): Changed (1/701) 264 to QC_PROBABLY_BAD because bad interpolation anchors 22:10:02 07 Mar 2017 UTC: INFO: QC.py(489): SUGGESTION: 339 bad_conductivity data_points in_between 262 264 % bad interpolation anchors 22:10:02 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/701) 1:6 259:263 700 701 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:10:02 07 Mar 2017 UTC: INFO: QC.py(180): Changed (13/701) 1:6 259:263 700 701 to QC_BAD because changed corrected salin implies changed speed 22:10:03 07 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:10:03 07 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 339 interp_salinity data_points in_between 322 368 % suspect thermal-inertia points 367 22:10:03 07 Mar 2017 UTC: INFO: QC.py(180): Changed (2/701) 228 256 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 22:10:03 07 Mar 2017 UTC: INFO: QC.py(180): Changed (1/701) 264 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 22:10:03 07 Mar 2017 UTC: INFO: QC.py(180): Changed (2/701) 228 256 to QC_INTERPOLATED because changed corrected temp implies changed speed 22:10:03 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 27.97 cm/s 22:10:03 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.97 cm/s 22:10:03 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:10:03 07 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (201/701) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:10:03 07 Mar 2017 UTC: INFO: QC.py(180): Changed (2/701) 256 700 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 22:10:03 07 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (201/701) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 22:10:03 07 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (4/701) 694 696 699 701 to QC_BAD because bad aa4330 oyxgen 22:10:03 07 Mar 2017 UTC: INFO: QC.py(180): Changed (2/701) 256 700 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 22:10:03 07 Mar 2017 UTC: INFO: QC.py(180): Changed (12/701) 1:6 259:263 700 to QC_BAD because changed salinity implies changed optode oxygen 22:10:03 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:10:03 07 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 22:10:03 07 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 22:10:03 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 339: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.85% reduction 22:10:03 07 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.339 22:10:03 07 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:10:03 07 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:10:03 07 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:10:03 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 22:10:03 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 22:12:49 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 22:12:50 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 22:12:50 07 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 22:13:22 07 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:13:22 07 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:13:22 07 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:13:22 07 Mar 2017 UTC /home/sg626/p6260339.log /home/sg626/p6260339.eng /home/sg626/p6260339.asc /home/sg626/p6260339.pro /home/sg626/p6260339.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 22:13:22 07 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:13:22 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:13:22 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:13:22 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:13:22 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:13:22 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:13:22 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:13:22 07 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:13:22 07 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:13:22 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:13:22 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:13:22 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:13:22 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:13:22 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:13:22 07 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:13:22 07 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:13:22 07 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:13:22 07 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:13:22 07 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:13:22 07 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:13:22 07 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:13:22 07 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:13:22 07 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:13:22 07 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 22:13:22 07 Mar 2017 UTC 01:50:39 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 28319 01:50:39 08 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:53:35 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 28518 01:53:35 08 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:53:35 08 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:53:35 08 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:53:35 08 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:53:35 08 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170307155334 ] 01:53:35 08 Mar 2017 UTC: INFO: Base.py(1333): PID:28533 01:53:35 08 Mar 2017 UTC: INFO: Base.py(1375): Started processing 01:53:35 08 Mar 2017 UTC 01:53:35 08 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:53:36 08 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:53:36 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:53:36 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:53:36 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:340 calls_made:1 call_cycle:0 01:53:36 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:53:36 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:340 calls_made:1 call_cycle:0 01:53:36 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:53:36 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:340 calls_made:1 call_cycle:0 01:53:36 08 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:340 calls_made:1 call_cycle:0 2241.2720 -15754.1630 03/08/17 01:48:01 UTC) to sdrifter@soest.hawaii.edu 01:53:36 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:340 calls_made:1 call_cycle:0 01:53:36 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:53:36 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:340 calls_made:1 call_cycle:0 01:53:36 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:53:36 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:340 calls_made:1 call_cycle:0 01:53:36 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:53:36 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:340 calls_made:1 call_cycle:0 01:53:36 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:53:36 08 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:53:41 08 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:53:42 08 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:53:42 08 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:53:42 08 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:53:42 08 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:53:42 08 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:53:44 08 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0340lz 01:53:44 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0340lz.x00 01:53:44 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0340lz.x01 01:53:44 08 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0340lz.r in process_file_group 01:53:44 08 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260340.log 01:53:44 08 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:53:44 08 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0340dz 01:53:44 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0340dz.x00 01:53:44 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0340dz.x01 01:53:44 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0340dz.x02 01:53:44 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0340dz.x03 01:53:44 08 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0340dz.r in process_file_group 01:53:44 08 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [340] 01:53:44 08 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [340] 01:53:45 08 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260340) for profiles 01:53:45 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:53:45 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/660) 658:660 to QC_BAD because CT out of water 01:53:45 08 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.092m) 01:53:45 08 Mar 2017 UTC: INFO: QC.py(365): Changed (10/660) 2 220 234 247 259 260 279 280 290 657 to QC_PROBABLY_BAD because raw temperature spikes 01:53:45 08 Mar 2017 UTC: INFO: QC.py(377): Changed (1/660) 660 to QC_BAD because raw salinity below bound 01:53:45 08 Mar 2017 UTC: INFO: QC.py(408): Changed (7/660) 206 220 234 247 279 280 290 to QC_PROBABLY_BAD because raw conductivity spikes 01:53:45 08 Mar 2017 UTC: INFO: QC.py(180): Changed (10/660) 2 220 234 247 259 260 279 280 290 657 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:53:45 08 Mar 2017 UTC: INFO: QC.py(180): Changed (1/660) 206 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 01:53:45 08 Mar 2017 UTC: INFO: QC.py(180): Changed (2/660) 658 659 to QC_BAD because changed raw cond implies changed raw salinity 01:53:45 08 Mar 2017 UTC: INFO: QC.py(365): Changed (10/660) 2 220 234 247 259 260 279 280 290 657 to QC_INTERPOLATED because temperature spikes 01:53:45 08 Mar 2017 UTC: INFO: QC.py(377): Changed (1/660) 660 to QC_BAD because salinity below bound 01:53:45 08 Mar 2017 UTC: INFO: QC.py(408): Changed (7/660) 206 220 234 247 279 280 290 to QC_INTERPOLATED because conductivity spikes 01:53:45 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/660) 257:261 to QC_BAD because slow apogee CT flow 01:53:45 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/660) 1:6 to QC_BAD because prior to dive start 01:53:45 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/660) 1:6 257:261 658:660 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:53:45 08 Mar 2017 UTC: INFO: QC.py(180): Changed (14/660) 1:6 257:261 658:660 to QC_BAD because changed corrected salin implies changed speed 01:53:45 08 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:53:45 08 Mar 2017 UTC: INFO: QC.py(180): Changed (7/660) 220 234 247 279 280 290 657 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 01:53:45 08 Mar 2017 UTC: INFO: QC.py(180): Changed (1/660) 206 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 01:53:45 08 Mar 2017 UTC: INFO: QC.py(180): Changed (7/660) 220 234 247 279 280 290 657 to QC_INTERPOLATED because changed corrected temp implies changed speed 01:53:45 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.46 cm/s 01:53:45 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.04 cm/s 01:53:45 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:53:45 08 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (194/660) 139 140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:53:45 08 Mar 2017 UTC: INFO: QC.py(180): Changed (2/660) 2 657 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 01:53:45 08 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (194/660) 139 140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 01:53:45 08 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/660) 659 660 to QC_BAD because bad aa4330 oyxgen 01:53:45 08 Mar 2017 UTC: INFO: QC.py(180): Changed (2/660) 2 657 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 01:53:45 08 Mar 2017 UTC: INFO: QC.py(180): Changed (12/660) 1:6 257:261 658 to QC_BAD because changed salinity implies changed optode oxygen 01:53:45 08 Mar 2017 UTC: INFO: QC.py(180): Changed (1/660) 206 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 01:53:45 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:53:45 08 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:53:45 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:53:46 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 340: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.12% reduction 01:53:46 08 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.340 01:53:46 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:53:46 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:53:46 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:53:46 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:53:46 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 01:56:33 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 01:56:34 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 01:56:34 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 01:57:06 08 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:57:06 08 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:57:06 08 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:57:06 08 Mar 2017 UTC /home/sg626/p6260340.log /home/sg626/p6260340.eng /home/sg626/p6260340.asc /home/sg626/p6260340.pro /home/sg626/p6260340.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 01:57:06 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:57:06 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:57:06 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:57:06 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:57:06 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:57:06 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:57:06 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:57:06 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:57:06 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:57:06 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:57:06 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:57:06 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:57:06 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:57:06 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:57:06 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:57:06 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:57:06 08 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:57:06 08 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:57:06 08 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:57:06 08 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:57:06 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:57:06 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:57:06 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:57:06 08 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 01:57:06 08 Mar 2017 UTC 05:43:12 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 2462 05:43:12 08 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:46:25 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 2618 05:46:25 08 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:46:25 08 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:46:25 08 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:46:25 08 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:46:25 08 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170307194624 ] 05:46:25 08 Mar 2017 UTC: INFO: Base.py(1333): PID:2625 05:46:25 08 Mar 2017 UTC: INFO: Base.py(1375): Started processing 05:46:25 08 Mar 2017 UTC 05:46:25 08 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:46:26 08 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:46:26 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:46:26 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:46:26 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:341 calls_made:1 call_cycle:0 05:46:26 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:46:26 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:341 calls_made:1 call_cycle:0 05:46:26 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:46:26 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:341 calls_made:1 call_cycle:0 05:46:26 08 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:341 calls_made:1 call_cycle:0 2242.2520 -15754.0700 03/08/17 05:41:00 UTC) to sdrifter@soest.hawaii.edu 05:46:26 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:341 calls_made:1 call_cycle:0 05:46:26 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:46:26 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:341 calls_made:1 call_cycle:0 05:46:26 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:46:26 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:341 calls_made:1 call_cycle:0 05:46:26 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:46:26 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:341 calls_made:1 call_cycle:0 05:46:26 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:46:26 08 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:46:31 08 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:46:32 08 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:46:32 08 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:46:32 08 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:46:32 08 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:46:32 08 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:46:34 08 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0341lz 05:46:34 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0341lz.x00 05:46:34 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0341lz.x01 05:46:34 08 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0341lz.r in process_file_group 05:46:34 08 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260341.log 05:46:34 08 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:46:34 08 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0341dz 05:46:34 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0341dz.x00 05:46:34 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0341dz.x01 05:46:34 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0341dz.x02 05:46:34 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0341dz.x03 05:46:34 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0341dz.x04 05:46:34 08 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0341dz.r in process_file_group 05:46:34 08 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [341] 05:46:34 08 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [341] 05:46:35 08 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260341) for profiles 05:46:35 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:46:35 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/694) 692:694 to QC_BAD because CT out of water 05:46:35 08 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.062m) 05:46:35 08 Mar 2017 UTC: INFO: QC.py(365): Changed (5/694) 286 293 298 302 303 to QC_PROBABLY_BAD because raw temperature spikes 05:46:35 08 Mar 2017 UTC: INFO: QC.py(377): Changed (2/694) 692 693 to QC_BAD because raw salinity below bound 05:46:35 08 Mar 2017 UTC: INFO: QC.py(408): Changed (6/694) 225 286 293 298 302 303 to QC_PROBABLY_BAD because raw conductivity spikes 05:46:35 08 Mar 2017 UTC: INFO: QC.py(180): Changed (5/694) 286 293 298 302 303 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:46:35 08 Mar 2017 UTC: INFO: QC.py(180): Changed (1/694) 225 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 05:46:35 08 Mar 2017 UTC: INFO: QC.py(180): Changed (1/694) 694 to QC_BAD because changed raw cond implies changed raw salinity 05:46:35 08 Mar 2017 UTC: INFO: QC.py(365): Changed (5/694) 286 293 298 302 303 to QC_INTERPOLATED because temperature spikes 05:46:35 08 Mar 2017 UTC: INFO: QC.py(377): Changed (2/694) 692 693 to QC_BAD because salinity below bound 05:46:35 08 Mar 2017 UTC: INFO: QC.py(408): Changed (6/694) 225 286 293 298 302 303 to QC_INTERPOLATED because conductivity spikes 05:46:35 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/694) 261:265 to QC_BAD because slow apogee CT flow 05:46:35 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/694) 1:6 to QC_BAD because prior to dive start 05:46:35 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/694) 691 to QC_BAD because end of climb 05:46:35 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/694) 1:6 261:265 691:694 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:46:35 08 Mar 2017 UTC: INFO: QC.py(180): Changed (15/694) 1:6 261:265 691:694 to QC_BAD because changed corrected salin implies changed speed 05:46:35 08 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:46:35 08 Mar 2017 UTC: INFO: QC.py(180): Changed (5/694) 286 293 298 302 303 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 05:46:35 08 Mar 2017 UTC: INFO: QC.py(180): Changed (1/694) 225 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 05:46:35 08 Mar 2017 UTC: INFO: QC.py(180): Changed (5/694) 286 293 298 302 303 to QC_INTERPOLATED because changed corrected temp implies changed speed 05:46:35 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.51 cm/s 05:46:35 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.06 cm/s 05:46:35 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:46:35 08 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (200/694) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:46:35 08 Mar 2017 UTC: INFO: QC.py(180): Changed (1/694) 286 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:46:35 08 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (200/694) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:46:35 08 Mar 2017 UTC: INFO: QC.py(180): Changed (1/694) 286 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:46:35 08 Mar 2017 UTC: INFO: QC.py(180): Changed (15/694) 1:6 261:265 691:694 to QC_BAD because changed salinity implies changed optode oxygen 05:46:35 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:46:35 08 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 05:46:35 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:46:35 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:46:35 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:46:35 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:46:35 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:46:35 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:46:35 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:46:35 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:46:35 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:46:35 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:46:35 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:46:35 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:46:35 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:46:35 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:46:35 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:46:35 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:46:35 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:46:35 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:46:35 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:46:35 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:46:35 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:46:35 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:46:35 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:46:35 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:46:35 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:46:36 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:46:36 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:46:36 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:46:36 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:46:36 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:46:36 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:46:36 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 05:46:36 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 341: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.16% reduction 05:46:36 08 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.341 05:46:36 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:46:36 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:46:36 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:46:36 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 05:46:36 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 05:49:23 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 05:49:24 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 05:49:24 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 05:49:57 08 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:49:57 08 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:49:57 08 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:49:57 08 Mar 2017 UTC /home/sg626/p6260341.log /home/sg626/p6260341.eng /home/sg626/p6260341.asc /home/sg626/p6260341.pro /home/sg626/p6260341.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 05:49:57 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:49:57 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:49:57 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:49:57 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:49:57 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:49:57 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:49:57 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:49:57 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:49:57 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:49:57 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:49:57 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:49:57 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:49:57 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:49:57 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:49:57 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:49:57 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:49:57 08 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:49:57 08 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:49:57 08 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:49:57 08 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:49:57 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:49:57 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:49:57 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:49:57 08 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 05:49:57 08 Mar 2017 UTC 09:32:05 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 12746 09:32:05 08 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 09:35:36 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 12942 09:35:36 08 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:35:36 08 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:35:36 08 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:35:36 08 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:35:36 08 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170307233536 ] 09:35:36 08 Mar 2017 UTC: INFO: Base.py(1333): PID:12950 09:35:36 08 Mar 2017 UTC: INFO: Base.py(1375): Started processing 09:35:36 08 Mar 2017 UTC 09:35:36 08 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:35:37 08 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:35:37 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:35:37 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:35:37 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:342 calls_made:1 call_cycle:0 09:35:37 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:35:37 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:342 calls_made:1 call_cycle:0 09:35:37 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:35:37 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:342 calls_made:1 call_cycle:0 09:35:37 08 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:342 calls_made:1 call_cycle:0 2242.3420 -15755.4890 03/08/17 09:29:55 UTC) to sdrifter@soest.hawaii.edu 09:35:38 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:342 calls_made:1 call_cycle:0 09:35:38 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:35:38 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:342 calls_made:1 call_cycle:0 09:35:38 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:35:38 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:342 calls_made:1 call_cycle:0 09:35:38 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:35:38 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:342 calls_made:1 call_cycle:0 09:35:38 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:35:38 08 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:35:43 08 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:35:44 08 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:35:44 08 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:35:44 08 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:35:44 08 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:35:44 08 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:35:45 08 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0342lz 09:35:45 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0342lz.x00 09:35:45 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0342lz.x01 09:35:45 08 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0342lz.r in process_file_group 09:35:45 08 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260342.log 09:35:45 08 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:35:45 08 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0342dz 09:35:45 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0342dz.x00 09:35:45 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0342dz.x01 09:35:45 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0342dz.x02 09:35:45 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0342dz.x03 09:35:45 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0342dz.x04 09:35:45 08 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0342dz.r in process_file_group 09:35:46 08 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [342] 09:35:46 08 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [342] 09:35:46 08 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260342) for profiles 09:35:46 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 09:35:46 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/691) 691 to QC_BAD because CT out of water 09:35:46 08 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.080m) 09:35:46 08 Mar 2017 UTC: INFO: QC.py(365): Changed (8/691) 3 244 245 250 255 268 274 690 to QC_PROBABLY_BAD because raw temperature spikes 09:35:46 08 Mar 2017 UTC: INFO: QC.py(377): Changed (2/691) 690 691 to QC_BAD because raw salinity below bound 09:35:46 08 Mar 2017 UTC: INFO: QC.py(408): Changed (4/691) 250 255 268 274 to QC_PROBABLY_BAD because raw conductivity spikes 09:35:46 08 Mar 2017 UTC: INFO: QC.py(180): Changed (7/691) 3 244 245 250 255 268 274 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 09:35:46 08 Mar 2017 UTC: INFO: QC.py(365): Changed (8/691) 3 244 245 250 255 268 274 690 to QC_INTERPOLATED because temperature spikes 09:35:46 08 Mar 2017 UTC: INFO: QC.py(377): Changed (2/691) 690 691 to QC_BAD because salinity below bound 09:35:46 08 Mar 2017 UTC: INFO: QC.py(388): Changed (1/691) 690 to QC_BAD because bad salinity indicates conductivity issues 09:35:46 08 Mar 2017 UTC: INFO: QC.py(408): Changed (4/691) 250 255 268 274 to QC_INTERPOLATED because conductivity spikes 09:35:46 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/691) 259:263 to QC_BAD because slow apogee CT flow 09:35:46 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/691) 1:6 to QC_BAD because prior to dive start 09:35:46 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/691) 689 to QC_BAD because end of climb 09:35:46 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/691) 1:6 259:263 689:691 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:35:46 08 Mar 2017 UTC: INFO: QC.py(180): Changed (14/691) 1:6 259:263 689:691 to QC_BAD because changed corrected salin implies changed speed 09:35:47 08 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:35:47 08 Mar 2017 UTC: INFO: QC.py(180): Changed (6/691) 244 245 250 255 268 274 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 09:35:47 08 Mar 2017 UTC: INFO: QC.py(180): Changed (6/691) 244 245 250 255 268 274 to QC_INTERPOLATED because changed corrected temp implies changed speed 09:35:47 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.21 cm/s 09:35:47 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.02 cm/s 09:35:47 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:35:47 08 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (194/691) 139 140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:35:47 08 Mar 2017 UTC: INFO: QC.py(180): Changed (2/691) 3 690 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:35:47 08 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (194/691) 139 140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 09:35:47 08 Mar 2017 UTC: INFO: QC.py(180): Changed (2/691) 3 690 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:35:47 08 Mar 2017 UTC: INFO: QC.py(180): Changed (14/691) 1:6 259:263 689:691 to QC_BAD because changed salinity implies changed optode oxygen 09:35:47 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:35:47 08 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:35:47 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 09:35:47 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 342: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.03% reduction 09:35:48 08 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.342 09:35:48 08 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.342 09:35:48 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:35:48 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:35:48 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:35:48 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 09:35:48 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 09:38:34 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 09:38:35 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 09:38:35 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 09:39:08 08 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:39:08 08 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:39:08 08 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:39:08 08 Mar 2017 UTC /home/sg626/p6260342.log /home/sg626/p6260342.eng /home/sg626/p6260342.asc /home/sg626/p6260342.pro /home/sg626/p6260342.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 09:39:08 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:39:08 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:39:08 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:39:08 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:39:08 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:39:08 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:39:08 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:39:08 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:39:08 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:39:08 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:39:08 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:39:08 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:39:08 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:39:08 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:39:08 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:39:08 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:39:08 08 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:39:08 08 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:39:08 08 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:39:08 08 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:39:08 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:39:08 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:39:08 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:39:08 08 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 09:39:08 08 Mar 2017 UTC 13:10:36 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 22626 13:10:36 08 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 13:13:52 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 22812 13:13:52 08 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:13:52 08 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:13:52 08 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:13:52 08 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:13:52 08 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170308031351 ] 13:13:52 08 Mar 2017 UTC: INFO: Base.py(1333): PID:22820 13:13:52 08 Mar 2017 UTC: INFO: Base.py(1375): Started processing 13:13:52 08 Mar 2017 UTC 13:13:52 08 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:13:53 08 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:13:53 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:13:53 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:13:53 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:343 calls_made:1 call_cycle:0 13:13:53 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:13:53 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:343 calls_made:1 call_cycle:0 13:13:53 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:13:53 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:343 calls_made:1 call_cycle:0 13:13:53 08 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:343 calls_made:1 call_cycle:0 2242.1310 -15757.4000 03/08/17 13:08:17 UTC) to sdrifter@soest.hawaii.edu 13:13:53 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:343 calls_made:1 call_cycle:0 13:13:53 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:13:53 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:343 calls_made:1 call_cycle:0 13:13:53 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:13:53 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:343 calls_made:1 call_cycle:0 13:13:53 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:13:53 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:343 calls_made:1 call_cycle:0 13:13:53 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:13:53 08 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:13:59 08 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:14:00 08 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:14:00 08 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:14:00 08 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:14:00 08 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:14:00 08 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:14:01 08 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0343lz 13:14:01 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0343lz.x00 13:14:01 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0343lz.x01 13:14:01 08 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0343lz.r in process_file_group 13:14:01 08 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260343.log 13:14:01 08 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:14:01 08 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0343dz 13:14:01 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0343dz.x00 13:14:01 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0343dz.x01 13:14:01 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0343dz.x02 13:14:01 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0343dz.x03 13:14:01 08 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0343dz.r in process_file_group 13:14:02 08 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [343] 13:14:02 08 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [343] 13:14:02 08 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260343) for profiles 13:14:02 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:14:02 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/615) 613:615 to QC_BAD because CT out of water 13:14:02 08 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.110m) 13:14:02 08 Mar 2017 UTC: INFO: QC.py(365): Changed (8/615) 225 246 251 274 278 282 284 614 to QC_PROBABLY_BAD because raw temperature spikes 13:14:02 08 Mar 2017 UTC: INFO: QC.py(408): Changed (10/615) 225 237 239 246 251 260 274 282 284 295 to QC_PROBABLY_BAD because raw conductivity spikes 13:14:02 08 Mar 2017 UTC: INFO: QC.py(180): Changed (8/615) 225 246 251 274 278 282 284 614 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:14:02 08 Mar 2017 UTC: INFO: QC.py(180): Changed (4/615) 237 239 260 295 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 13:14:02 08 Mar 2017 UTC: INFO: QC.py(180): Changed (3/615) 613:615 to QC_BAD because changed raw cond implies changed raw salinity 13:14:02 08 Mar 2017 UTC: INFO: QC.py(365): Changed (8/615) 225 246 251 274 278 282 284 614 to QC_INTERPOLATED because temperature spikes 13:14:02 08 Mar 2017 UTC: INFO: QC.py(408): Changed (10/615) 225 237 239 246 251 260 274 282 284 295 to QC_INTERPOLATED because conductivity spikes 13:14:02 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/615) 258:262 to QC_BAD because slow apogee CT flow 13:14:02 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/615) 1:6 to QC_BAD because prior to dive start 13:14:02 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/615) 612 to QC_BAD because end of climb 13:14:02 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/615) 1:6 258:262 612:615 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:14:02 08 Mar 2017 UTC: INFO: QC.py(180): Changed (15/615) 1:6 258:262 612:615 to QC_BAD because changed corrected salin implies changed speed 13:14:03 08 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:14:03 08 Mar 2017 UTC: INFO: QC.py(180): Changed (7/615) 225 246 251 274 278 282 284 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 13:14:03 08 Mar 2017 UTC: INFO: QC.py(180): Changed (3/615) 237 239 295 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 13:14:03 08 Mar 2017 UTC: INFO: QC.py(180): Changed (7/615) 225 246 251 274 278 282 284 to QC_INTERPOLATED because changed corrected temp implies changed speed 13:14:03 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.17 cm/s 13:14:03 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.79 cm/s 13:14:03 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:14:03 08 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (192/615) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:14:03 08 Mar 2017 UTC: INFO: QC.py(180): Changed (3/615) 246 251 614 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:14:03 08 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (192/615) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:14:03 08 Mar 2017 UTC: INFO: QC.py(180): Changed (3/615) 246 251 614 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:14:03 08 Mar 2017 UTC: INFO: QC.py(180): Changed (15/615) 1:6 258:262 612:615 to QC_BAD because changed salinity implies changed optode oxygen 13:14:03 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:14:03 08 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:14:03 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:14:03 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 343: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.44% reduction 13:14:03 08 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.343 13:14:03 08 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.343 13:14:03 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:14:03 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:14:03 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:14:04 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:14:04 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:16:50 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 13:16:51 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:16:51 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:17:25 08 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:17:25 08 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:17:25 08 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:17:25 08 Mar 2017 UTC /home/sg626/p6260343.log /home/sg626/p6260343.eng /home/sg626/p6260343.asc /home/sg626/p6260343.pro /home/sg626/p6260343.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:17:25 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:17:25 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:17:25 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:17:25 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:17:25 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:17:25 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:17:25 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:17:25 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:17:25 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:17:25 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:17:25 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:17:25 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:17:25 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:17:25 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:17:25 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:17:25 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:17:25 08 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:17:25 08 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:17:25 08 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:17:25 08 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:17:25 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:17:25 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:17:25 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:17:25 08 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 13:17:25 08 Mar 2017 UTC 16:46:40 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 32255 16:46:40 08 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 16:49:56 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 32434 16:49:56 08 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:49:56 08 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:49:56 08 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:49:56 08 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:49:56 08 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170308064955 ] 16:49:56 08 Mar 2017 UTC: INFO: Base.py(1333): PID:32442 16:49:56 08 Mar 2017 UTC: INFO: Base.py(1375): Started processing 16:49:56 08 Mar 2017 UTC 16:49:56 08 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:49:57 08 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:49:57 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:49:57 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:49:57 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:344 calls_made:1 call_cycle:0 16:49:57 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:49:57 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:344 calls_made:1 call_cycle:0 16:49:57 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:49:57 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:344 calls_made:1 call_cycle:0 16:49:57 08 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:344 calls_made:1 call_cycle:0 2242.5860 -15759.4530 03/08/17 16:44:24 UTC) to sdrifter@soest.hawaii.edu 16:49:57 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:344 calls_made:1 call_cycle:0 16:49:57 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:49:57 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:344 calls_made:1 call_cycle:0 16:49:57 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:49:57 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:344 calls_made:1 call_cycle:0 16:49:57 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:49:57 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:344 calls_made:1 call_cycle:0 16:49:57 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:49:57 08 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:50:02 08 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:50:03 08 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:50:03 08 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:50:03 08 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:50:03 08 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:50:03 08 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:50:05 08 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0344lz 16:50:05 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0344lz.x00 16:50:05 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0344lz.x01 16:50:05 08 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0344lz.r in process_file_group 16:50:05 08 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260344.log 16:50:05 08 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:50:05 08 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0344dz 16:50:05 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0344dz.x00 16:50:05 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0344dz.x01 16:50:05 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0344dz.x02 16:50:05 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0344dz.x03 16:50:05 08 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0344dz.r in process_file_group 16:50:06 08 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [344] 16:50:06 08 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [344] 16:50:06 08 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260344) for profiles 16:50:06 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:50:06 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/629) 629 to QC_BAD because CT out of water 16:50:06 08 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.152m) 16:50:06 08 Mar 2017 UTC: INFO: QC.py(365): Changed (16/629) 2 223 230 236 241 246 247 252 254 255 263 265 275 ... to QC_PROBABLY_BAD because raw temperature spikes 16:50:06 08 Mar 2017 UTC: INFO: QC.py(377): Changed (1/629) 629 to QC_BAD because raw salinity below bound 16:50:06 08 Mar 2017 UTC: INFO: QC.py(408): Changed (14/629) 209 230 241 246 247 252 254 255 263 265 275 284 ... to QC_PROBABLY_BAD because raw conductivity spikes 16:50:06 08 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <234 pt uncorrectable 986.6m SUSPECT weak conductivity anomaly n:-0.26 p:0.35> 16:50:06 08 Mar 2017 UTC: INFO: QC.py(180): Changed (16/629) 2 223 230 236 241 246 247 252 254 255 263 265 275 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:50:06 08 Mar 2017 UTC: INFO: QC.py(180): Changed (1/629) 209 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 16:50:06 08 Mar 2017 UTC: INFO: QC.py(365): Changed (16/629) 2 223 230 236 241 246 247 252 254 255 263 265 275 ... to QC_INTERPOLATED because temperature spikes 16:50:06 08 Mar 2017 UTC: INFO: QC.py(377): Changed (1/629) 629 to QC_BAD because salinity below bound 16:50:06 08 Mar 2017 UTC: INFO: QC.py(408): Changed (14/629) 209 230 241 246 247 252 254 255 263 265 275 284 ... to QC_INTERPOLATED because conductivity spikes 16:50:06 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/629) 257:261 to QC_BAD because slow apogee CT flow 16:50:06 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/629) 1:6 to QC_BAD because prior to dive start 16:50:06 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/629) 628 to QC_BAD because end of climb 16:50:06 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/629) 1:6 257:261 628 629 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:50:06 08 Mar 2017 UTC: INFO: QC.py(180): Changed (13/629) 1:6 257:261 628 629 to QC_BAD because changed corrected salin implies changed speed 16:50:07 08 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:50:07 08 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 344 interp_salinity data_points in_between 334 382 % suspect thermal-inertia points 377 16:50:07 08 Mar 2017 UTC: INFO: QC.py(180): Changed (15/629) 223 230 236 241 246 247 252 254 255 263 265 275 ... to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 16:50:07 08 Mar 2017 UTC: INFO: QC.py(180): Changed (1/629) 209 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 16:50:07 08 Mar 2017 UTC: INFO: QC.py(180): Changed (15/629) 223 230 236 241 246 247 252 254 255 263 265 275 ... to QC_INTERPOLATED because changed corrected temp implies changed speed 16:50:07 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.11 cm/s 16:50:07 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.91 cm/s 16:50:07 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:50:07 08 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (189/629) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:50:07 08 Mar 2017 UTC: INFO: QC.py(180): Changed (4/629) 2 236 241 246 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:50:07 08 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (189/629) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:50:07 08 Mar 2017 UTC: INFO: QC.py(180): Changed (4/629) 2 236 241 246 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:50:07 08 Mar 2017 UTC: INFO: QC.py(180): Changed (13/629) 1:6 257:261 628 629 to QC_BAD because changed salinity implies changed optode oxygen 16:50:07 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:50:07 08 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:50:07 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:50:07 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 344: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.07% reduction 16:50:07 08 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.344 16:50:07 08 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.344 16:50:07 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:50:07 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:50:07 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:50:07 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:50:07 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:52:56 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 16:52:57 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:52:57 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:53:30 08 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:53:30 08 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:53:30 08 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:53:30 08 Mar 2017 UTC /home/sg626/p6260344.log /home/sg626/p6260344.eng /home/sg626/p6260344.asc /home/sg626/p6260344.pro /home/sg626/p6260344.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:53:30 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:53:30 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:53:30 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:53:30 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:53:30 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:53:30 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:53:30 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:53:30 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:53:30 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:53:30 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:53:30 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:53:30 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:53:30 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:53:30 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:53:30 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:53:30 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:53:30 08 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:53:30 08 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:53:30 08 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:53:30 08 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:53:30 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:53:30 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:53:30 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:53:30 08 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 16:53:30 08 Mar 2017 UTC 20:31:13 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 8481 20:31:13 08 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:34:14 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 8621 20:34:14 08 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:34:14 08 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:34:14 08 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:34:14 08 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:34:14 08 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170308103413 ] 20:34:14 08 Mar 2017 UTC: INFO: Base.py(1333): PID:8628 20:34:14 08 Mar 2017 UTC: INFO: Base.py(1375): Started processing 20:34:14 08 Mar 2017 UTC 20:34:14 08 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:34:15 08 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:34:15 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:34:15 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:34:15 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:0 20:34:15 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:34:15 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:0 20:34:15 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:34:15 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:0 20:34:15 08 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:345 calls_made:1 call_cycle:0 2243.3100 -15800.7310 03/08/17 20:29:01 UTC) to sdrifter@soest.hawaii.edu 20:34:15 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:0 20:34:15 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:34:15 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:0 20:34:15 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:34:15 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:0 20:34:15 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:34:15 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:0 20:34:15 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:34:15 08 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:34:20 08 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:34:21 08 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:34:21 08 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:34:21 08 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:34:21 08 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:34:21 08 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:34:23 08 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0345lz 20:34:23 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0345lz.x00 20:34:23 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0345lz.x01 20:34:23 08 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0345lz.r in process_file_group 20:34:23 08 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260345.log 20:34:23 08 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:34:23 08 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0345dz 20:34:23 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0345dz.x00 20:34:23 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0345dz.x01 20:34:23 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0345dz.x02 20:34:23 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0345dz.x03 20:34:23 08 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0345dz.x04 20:34:23 08 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0345dz.r in process_file_group 20:34:23 08 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [345] 20:34:23 08 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [345] 20:34:23 08 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260345) for profiles 20:34:23 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 20:34:23 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/668) 666 667 to QC_BAD because CT out of water 20:34:23 08 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.044m) 20:34:23 08 Mar 2017 UTC: INFO: QC.py(365): Changed (15/668) 2 198 201 202 221 223 228 232 264 268 286 288 665:667 to QC_PROBABLY_BAD because raw temperature spikes 20:34:23 08 Mar 2017 UTC: INFO: QC.py(408): Changed (11/668) 198 202 221 223 228 232 243 264 268 286 288 to QC_PROBABLY_BAD because raw conductivity spikes 20:34:23 08 Mar 2017 UTC: INFO: QC.py(180): Changed (15/668) 2 198 201 202 221 223 228 232 264 268 286 288 665:667 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 20:34:23 08 Mar 2017 UTC: INFO: QC.py(180): Changed (1/668) 243 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 20:34:23 08 Mar 2017 UTC: INFO: QC.py(180): Changed (2/668) 666 667 to QC_BAD because changed raw cond implies changed raw salinity 20:34:23 08 Mar 2017 UTC: INFO: QC.py(365): Changed (15/668) 2 198 201 202 221 223 228 232 264 268 286 288 665:667 to QC_INTERPOLATED because temperature spikes 20:34:23 08 Mar 2017 UTC: INFO: QC.py(408): Changed (11/668) 198 202 221 223 228 232 243 264 268 286 288 to QC_INTERPOLATED because conductivity spikes 20:34:23 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/668) 248:252 to QC_BAD because slow apogee CT flow 20:34:23 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/668) 1:6 to QC_BAD because prior to dive start 20:34:23 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/668) 668 to QC_BAD because end of climb 20:34:23 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/668) 1:6 248:252 666:668 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 20:34:23 08 Mar 2017 UTC: INFO: QC.py(180): Changed (14/668) 1:6 248:252 666:668 to QC_BAD because changed corrected salin implies changed speed 20:34:24 08 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 20:34:24 08 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 345 interp_salinity data_points in_between 373 379 % suspect thermal-inertia points 373:375 20:34:24 08 Mar 2017 UTC: INFO: QC.py(180): Changed (12/668) 198 201 202 221 223 228 232 264 268 286 288 665 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 20:34:24 08 Mar 2017 UTC: INFO: QC.py(180): Changed (1/668) 243 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 20:34:24 08 Mar 2017 UTC: INFO: QC.py(180): Changed (12/668) 198 201 202 221 223 228 232 264 268 286 288 665 to QC_INTERPOLATED because changed corrected temp implies changed speed 20:34:24 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.61 cm/s 20:34:24 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.24 cm/s 20:34:24 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 20:34:24 08 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (194/668) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 20:34:24 08 Mar 2017 UTC: INFO: QC.py(180): Changed (7/668) 2 201 221 286 665:667 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 20:34:24 08 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (194/668) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 20:34:24 08 Mar 2017 UTC: INFO: QC.py(180): Changed (7/668) 2 201 221 286 665:667 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 20:34:24 08 Mar 2017 UTC: INFO: QC.py(180): Changed (14/668) 1:6 248:252 666:668 to QC_BAD because changed salinity implies changed optode oxygen 20:34:24 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 20:34:24 08 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 20:34:24 08 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 20:34:25 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 345: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.10% reduction 20:34:25 08 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.345 20:34:25 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:34:25 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:34:25 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:34:25 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 20:34:25 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 20:36:25 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 8796 20:36:25 08 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:37:16 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 20:37:17 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 20:37:17 08 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 20:37:24 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 8886 20:37:24 08 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:37:24 08 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:37:24 08 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:37:24 08 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:37:24 08 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170308103724 ] 20:37:24 08 Mar 2017 UTC: INFO: Base.py(1333): PID:8894 20:37:25 08 Mar 2017 UTC: INFO: Base.py(1375): Started processing 20:37:25 08 Mar 2017 UTC 20:37:25 08 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:37:26 08 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:37:26 08 Mar 2017 UTC: WARNING: Base.py(1414): Previous conversion process (pid:8628) still exists - signalling process to complete 20:37:26 08 Mar 2017 UTC: WARNING: Base.py(1147): Caught SIGUSR1 - bailing out of further processing 20:37:26 08 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:37:26 08 Mar 2017 UTC /home/sg626/p6260345.log /home/sg626/p6260345.eng /home/sg626/p6260345.asc /home/sg626/p6260345.pro /home/sg626/p6260345.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc 20:37:26 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:37:26 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:37:26 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:37:26 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:37:26 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:37:26 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:37:26 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:37:26 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:37:26 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:37:26 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:37:26 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:37:26 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:37:26 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:37:26 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:37:26 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:37:26 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:37:26 08 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:37:26 08 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:37:26 08 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:37:26 08 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:37:26 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:37:26 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:37:26 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:37:26 08 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 20:37:26 08 Mar 2017 UTC 20:37:27 08 Mar 2017 UTC: INFO: Base.py(1425): Previous conversion process (pid:8628) apparently recieved the signal - proceeding 20:37:27 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:37:27 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:37:27 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:1 20:37:27 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:1 2243.2670 -15800.7710 03/08/17 20:35:01 UTC QUIT_COMMAND) to 8082269543@txt.att.net 20:37:27 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:37:27 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:1 20:37:27 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:1 2243.2670 -15800.7710 03/08/17 20:35:01 UTC QUIT_COMMAND) to 8087808045@vtext.com 20:37:27 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:37:27 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:1 20:37:27 08 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:345 calls_made:1 call_cycle:1 2243.2670 -15800.7710 03/08/17 20:35:01 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 20:37:27 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:1 20:37:27 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:1 2243.2670 -15800.7710 03/08/17 20:35:01 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 20:37:27 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:37:27 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:1 20:37:27 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:1 2243.2670 -15800.7710 03/08/17 20:35:01 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 20:37:27 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:37:27 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:1 20:37:27 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:1 2243.2670 -15800.7710 03/08/17 20:35:01 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 20:37:27 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:37:27 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:1 20:37:27 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:1 2243.2670 -15800.7710 03/08/17 20:35:01 UTC QUIT_COMMAND) to hramm@hawaii.edu 20:37:27 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:37:27 08 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:37:32 08 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:37:33 08 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:37:33 08 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:37:33 08 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:37:33 08 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:37:33 08 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:37:35 08 Mar 2017 UTC: WARNING: Base.py(1624): No dives to process 20:37:35 08 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [] 20:37:35 08 Mar 2017 UTC: INFO: Base.py(1780): No dives found to profile 20:37:35 08 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.345.1 20:37:35 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:37:35 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:37:35 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:37:35 08 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:37:35 08 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:37:35 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:37:35 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:37:35 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:37:35 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:37:35 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:37:35 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:37:35 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:37:35 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:37:35 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:37:35 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:37:35 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:37:35 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:37:35 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:37:35 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:37:35 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:37:35 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:37:35 08 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:37:35 08 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:37:35 08 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:37:35 08 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:37:35 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:37:35 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:37:35 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:37:35 08 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 20:37:35 08 Mar 2017 UTC 20:42:11 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9315 20:42:11 08 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:43:07 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9412 20:43:07 08 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:43:07 08 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:43:07 08 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:43:07 08 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:43:07 08 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170308104307 ] 20:43:07 08 Mar 2017 UTC: INFO: Base.py(1333): PID:9419 20:43:07 08 Mar 2017 UTC: INFO: Base.py(1375): Started processing 20:43:07 08 Mar 2017 UTC 20:43:07 08 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:43:08 08 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:43:08 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:43:08 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:43:08 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:2 20:43:08 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:2 2243.2290 -15800.8050 03/08/17 20:40:48 UTC QUIT_COMMAND) to 8082269543@txt.att.net 20:43:08 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:43:08 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:2 20:43:08 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:2 2243.2290 -15800.8050 03/08/17 20:40:48 UTC QUIT_COMMAND) to 8087808045@vtext.com 20:43:08 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:43:08 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:2 20:43:08 08 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:345 calls_made:1 call_cycle:2 2243.2290 -15800.8050 03/08/17 20:40:48 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 20:43:08 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:2 20:43:08 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:2 2243.2290 -15800.8050 03/08/17 20:40:48 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 20:43:08 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:43:08 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:2 20:43:08 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:2 2243.2290 -15800.8050 03/08/17 20:40:48 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 20:43:09 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:43:09 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:2 20:43:09 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:2 2243.2290 -15800.8050 03/08/17 20:40:48 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 20:43:09 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:43:09 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:2 20:43:09 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:2 2243.2290 -15800.8050 03/08/17 20:40:48 UTC QUIT_COMMAND) to hramm@hawaii.edu 20:43:09 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:43:09 08 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:43:14 08 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:43:15 08 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:43:15 08 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:43:15 08 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:43:15 08 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:43:15 08 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:43:17 08 Mar 2017 UTC: WARNING: Base.py(1624): No dives to process 20:43:17 08 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [] 20:43:17 08 Mar 2017 UTC: INFO: Base.py(1780): No dives found to profile 20:43:17 08 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.345.2 20:43:17 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:43:17 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:43:17 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:43:17 08 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:43:17 08 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:43:17 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:43:17 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:43:17 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:43:17 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:43:17 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:43:17 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:43:17 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:43:17 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:43:17 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:43:17 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:43:17 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:43:17 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:43:17 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:43:17 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:43:17 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:43:17 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:43:17 08 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:43:17 08 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:43:17 08 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:43:17 08 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:43:17 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:43:17 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:43:17 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:43:17 08 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 20:43:17 08 Mar 2017 UTC 20:47:53 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9868 20:47:53 08 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:48:51 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9978 20:48:51 08 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:48:51 08 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:48:51 08 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:48:51 08 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:48:51 08 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170308104851 ] 20:48:51 08 Mar 2017 UTC: INFO: Base.py(1333): PID:9985 20:48:51 08 Mar 2017 UTC: INFO: Base.py(1375): Started processing 20:48:51 08 Mar 2017 UTC 20:48:51 08 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:48:52 08 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:48:52 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:48:52 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:48:52 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:3 20:48:52 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:3 2243.1910 -15800.8370 03/08/17 20:46:31 UTC QUIT_COMMAND) to 8082269543@txt.att.net 20:48:52 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:48:52 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:3 20:48:52 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:3 2243.1910 -15800.8370 03/08/17 20:46:31 UTC QUIT_COMMAND) to 8087808045@vtext.com 20:48:52 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:48:52 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:3 20:48:52 08 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:345 calls_made:1 call_cycle:3 2243.1910 -15800.8370 03/08/17 20:46:31 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 20:48:52 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:3 20:48:52 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:3 2243.1910 -15800.8370 03/08/17 20:46:31 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 20:48:52 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:48:52 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:3 20:48:52 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:3 2243.1910 -15800.8370 03/08/17 20:46:31 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 20:48:52 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:48:52 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:3 20:48:52 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:3 2243.1910 -15800.8370 03/08/17 20:46:31 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 20:48:53 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:48:53 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:3 20:48:53 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:3 2243.1910 -15800.8370 03/08/17 20:46:31 UTC QUIT_COMMAND) to hramm@hawaii.edu 20:48:53 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:48:53 08 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:48:58 08 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:48:59 08 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:48:59 08 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:48:59 08 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:48:59 08 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:48:59 08 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:49:01 08 Mar 2017 UTC: WARNING: Base.py(1624): No dives to process 20:49:01 08 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [] 20:49:01 08 Mar 2017 UTC: INFO: Base.py(1780): No dives found to profile 20:49:01 08 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.345.3 20:49:01 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:49:01 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:49:01 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:49:01 08 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:49:01 08 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:49:01 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:49:01 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:49:01 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:49:01 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:49:01 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:49:01 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:49:01 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:49:01 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:49:01 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:49:01 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:49:01 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:49:01 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:49:01 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:49:01 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:49:01 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:49:01 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:49:01 08 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:49:01 08 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:49:01 08 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:49:01 08 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:49:01 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:49:01 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:49:01 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:49:01 08 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 20:49:01 08 Mar 2017 UTC 20:53:33 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 10350 20:53:33 08 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:54:34 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 10462 20:54:34 08 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:54:34 08 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:54:34 08 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:54:34 08 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:54:34 08 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170308105433 ] 20:54:34 08 Mar 2017 UTC: INFO: Base.py(1333): PID:10470 20:54:34 08 Mar 2017 UTC: INFO: Base.py(1375): Started processing 20:54:34 08 Mar 2017 UTC 20:54:34 08 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:54:35 08 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:54:35 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:54:35 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:54:35 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:4 20:54:35 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:4 2243.1560 -15800.8780 03/08/17 20:52:15 UTC QUIT_COMMAND) to 8082269543@txt.att.net 20:54:35 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:54:35 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:4 20:54:35 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:4 2243.1560 -15800.8780 03/08/17 20:52:15 UTC QUIT_COMMAND) to 8087808045@vtext.com 20:54:35 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:54:35 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:4 20:54:35 08 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:345 calls_made:1 call_cycle:4 2243.1560 -15800.8780 03/08/17 20:52:15 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 20:54:35 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:4 20:54:35 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:4 2243.1560 -15800.8780 03/08/17 20:52:15 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 20:54:35 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:54:35 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:4 20:54:35 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:4 2243.1560 -15800.8780 03/08/17 20:52:15 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 20:54:35 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:54:35 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:4 20:54:35 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:4 2243.1560 -15800.8780 03/08/17 20:52:15 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 20:54:35 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:54:35 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:4 20:54:35 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:4 2243.1560 -15800.8780 03/08/17 20:52:15 UTC QUIT_COMMAND) to hramm@hawaii.edu 20:54:35 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:54:35 08 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:54:40 08 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:54:41 08 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:54:41 08 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:54:41 08 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:54:41 08 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:54:41 08 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:54:43 08 Mar 2017 UTC: WARNING: Base.py(1624): No dives to process 20:54:43 08 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [] 20:54:43 08 Mar 2017 UTC: INFO: Base.py(1780): No dives found to profile 20:54:43 08 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.345.4 20:54:43 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:54:43 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:54:43 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:54:43 08 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:54:43 08 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:54:43 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:54:43 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:54:43 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:54:43 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:54:43 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:54:43 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:54:43 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:54:43 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:54:43 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:54:43 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:54:43 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:54:43 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:54:43 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:54:43 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:54:43 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:54:43 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:54:43 08 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:54:43 08 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:54:43 08 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:54:43 08 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:54:43 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:54:43 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:54:43 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:54:43 08 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 20:54:43 08 Mar 2017 UTC 20:59:21 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 10762 20:59:21 08 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:00:14 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 10951 21:00:14 08 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:00:14 08 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:00:14 08 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:00:14 08 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:00:14 08 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170308110014 ] 21:00:14 08 Mar 2017 UTC: INFO: Base.py(1333): PID:10958 21:00:14 08 Mar 2017 UTC: INFO: Base.py(1375): Started processing 21:00:14 08 Mar 2017 UTC 21:00:14 08 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:00:15 08 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:00:15 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:00:15 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:00:15 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:5 21:00:15 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:5 2243.1260 -15800.9200 03/08/17 20:57:57 UTC QUIT_COMMAND) to 8082269543@txt.att.net 21:00:16 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:00:16 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:5 21:00:16 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:5 2243.1260 -15800.9200 03/08/17 20:57:57 UTC QUIT_COMMAND) to 8087808045@vtext.com 21:00:16 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:00:16 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:5 21:00:16 08 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:345 calls_made:1 call_cycle:5 2243.1260 -15800.9200 03/08/17 20:57:57 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:00:16 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:5 21:00:16 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:5 2243.1260 -15800.9200 03/08/17 20:57:57 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:00:16 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:00:16 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:5 21:00:16 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:5 2243.1260 -15800.9200 03/08/17 20:57:57 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 21:00:16 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:00:16 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:5 21:00:16 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:5 2243.1260 -15800.9200 03/08/17 20:57:57 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 21:00:16 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:00:16 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:5 21:00:16 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:5 2243.1260 -15800.9200 03/08/17 20:57:57 UTC QUIT_COMMAND) to hramm@hawaii.edu 21:00:16 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:00:16 08 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:00:21 08 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:00:22 08 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:00:22 08 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:00:22 08 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:00:22 08 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:00:22 08 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:00:24 08 Mar 2017 UTC: WARNING: Base.py(1624): No dives to process 21:00:24 08 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [] 21:00:24 08 Mar 2017 UTC: INFO: Base.py(1780): No dives found to profile 21:00:24 08 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.345.5 21:00:24 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:00:24 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:00:24 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:00:24 08 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:00:24 08 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:00:24 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:00:24 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:00:24 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:00:24 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:00:24 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:00:24 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:00:24 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:00:24 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:00:24 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:00:24 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:00:24 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:00:24 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:00:24 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:00:24 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:00:24 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:00:24 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:00:24 08 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:00:24 08 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:00:24 08 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:00:24 08 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:00:24 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:00:24 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:00:24 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:00:24 08 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 21:00:24 08 Mar 2017 UTC 21:04:55 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 11420 21:04:55 08 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:05:48 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 11530 21:05:48 08 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:05:48 08 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:05:48 08 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:05:48 08 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:05:48 08 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170308110548 ] 21:05:48 08 Mar 2017 UTC: INFO: Base.py(1333): PID:11538 21:05:48 08 Mar 2017 UTC: INFO: Base.py(1375): Started processing 21:05:48 08 Mar 2017 UTC 21:05:48 08 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:05:49 08 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:05:49 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:05:49 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:05:49 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:6 21:05:49 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:6 2243.0970 -15800.9620 03/08/17 21:03:38 UTC QUIT_COMMAND) to 8082269543@txt.att.net 21:05:49 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:05:49 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:6 21:05:49 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:6 2243.0970 -15800.9620 03/08/17 21:03:38 UTC QUIT_COMMAND) to 8087808045@vtext.com 21:05:49 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:05:49 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:6 21:05:49 08 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:345 calls_made:1 call_cycle:6 2243.0970 -15800.9620 03/08/17 21:03:38 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:05:49 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:6 21:05:49 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:6 2243.0970 -15800.9620 03/08/17 21:03:38 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:05:49 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:05:49 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:6 21:05:49 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:6 2243.0970 -15800.9620 03/08/17 21:03:38 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 21:05:50 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:05:50 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:6 21:05:50 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:6 2243.0970 -15800.9620 03/08/17 21:03:38 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 21:05:50 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:05:50 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:6 21:05:50 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:6 2243.0970 -15800.9620 03/08/17 21:03:38 UTC QUIT_COMMAND) to hramm@hawaii.edu 21:05:50 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:05:50 08 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:05:55 08 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:05:56 08 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:05:56 08 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:05:56 08 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:05:56 08 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:05:56 08 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:05:58 08 Mar 2017 UTC: WARNING: Base.py(1624): No dives to process 21:05:58 08 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [] 21:05:58 08 Mar 2017 UTC: INFO: Base.py(1780): No dives found to profile 21:05:58 08 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.345.6 21:05:58 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:05:58 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:05:58 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:05:58 08 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:05:58 08 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:05:58 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:05:58 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:05:58 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:05:58 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:05:58 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:05:58 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:05:58 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:05:58 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:05:58 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:05:58 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:05:58 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:05:58 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:05:58 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:05:58 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:05:58 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:05:58 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:05:58 08 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:05:58 08 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:05:58 08 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:05:58 08 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:05:58 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:05:58 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:05:58 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:05:58 08 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 21:05:58 08 Mar 2017 UTC 21:10:50 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 11907 21:10:50 08 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:11:48 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 12017 21:11:48 08 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:11:48 08 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:11:48 08 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:11:48 08 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:11:48 08 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170308111147 ] 21:11:48 08 Mar 2017 UTC: INFO: Base.py(1333): PID:12025 21:11:48 08 Mar 2017 UTC: INFO: Base.py(1375): Started processing 21:11:48 08 Mar 2017 UTC 21:11:48 08 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:11:49 08 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:11:49 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:11:49 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:11:49 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:7 21:11:49 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:7 2243.0680 -15800.9990 03/08/17 21:09:12 UTC QUIT_COMMAND) to 8082269543@txt.att.net 21:11:49 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:11:49 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:7 21:11:49 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:7 2243.0680 -15800.9990 03/08/17 21:09:12 UTC QUIT_COMMAND) to 8087808045@vtext.com 21:11:49 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:11:49 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:7 21:11:49 08 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:345 calls_made:1 call_cycle:7 2243.0680 -15800.9990 03/08/17 21:09:12 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:11:49 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:7 21:11:49 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:7 2243.0680 -15800.9990 03/08/17 21:09:12 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:11:49 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:11:49 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:7 21:11:49 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:7 2243.0680 -15800.9990 03/08/17 21:09:12 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 21:11:49 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:11:49 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:7 21:11:49 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:7 2243.0680 -15800.9990 03/08/17 21:09:12 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 21:11:49 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:11:49 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:7 21:11:49 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:7 2243.0680 -15800.9990 03/08/17 21:09:12 UTC QUIT_COMMAND) to hramm@hawaii.edu 21:11:49 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:11:49 08 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:11:54 08 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:11:55 08 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:11:55 08 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:11:55 08 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:11:55 08 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:11:55 08 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:11:57 08 Mar 2017 UTC: WARNING: Base.py(1624): No dives to process 21:11:57 08 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [] 21:11:57 08 Mar 2017 UTC: INFO: Base.py(1780): No dives found to profile 21:11:57 08 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.345.7 21:11:57 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:11:57 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:11:57 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:11:57 08 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:11:57 08 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:11:57 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:11:57 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:11:57 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:11:57 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:11:57 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:11:57 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:11:57 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:11:57 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:11:57 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:11:57 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:11:57 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:11:57 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:11:57 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:11:57 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:11:57 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:11:57 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:11:57 08 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:11:57 08 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:11:57 08 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:11:57 08 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:11:57 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:11:57 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:11:57 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:11:57 08 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 21:11:57 08 Mar 2017 UTC 21:18:42 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 12374 21:18:42 08 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:19:42 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 12486 21:19:42 08 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:19:42 08 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:19:42 08 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:19:42 08 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:19:42 08 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170308111941 ] 21:19:42 08 Mar 2017 UTC: INFO: Base.py(1333): PID:12493 21:19:42 08 Mar 2017 UTC: INFO: Base.py(1375): Started processing 21:19:42 08 Mar 2017 UTC 21:19:42 08 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:19:43 08 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:19:43 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:19:43 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:19:43 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:2 call_cycle:8 21:19:43 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:2 call_cycle:8 2243.0390 -15801.0370 03/08/17 21:15:11 UTC QUIT_COMMAND) to 8082269543@txt.att.net 21:19:43 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:19:43 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:2 call_cycle:8 21:19:43 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:2 call_cycle:8 2243.0390 -15801.0370 03/08/17 21:15:11 UTC QUIT_COMMAND) to 8087808045@vtext.com 21:19:43 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:19:43 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:2 call_cycle:8 21:19:43 08 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:345 calls_made:2 call_cycle:8 2243.0390 -15801.0370 03/08/17 21:15:11 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:19:43 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:2 call_cycle:8 21:19:43 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:2 call_cycle:8 2243.0390 -15801.0370 03/08/17 21:15:11 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:19:43 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:19:43 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:2 call_cycle:8 21:19:43 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:2 call_cycle:8 2243.0390 -15801.0370 03/08/17 21:15:11 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 21:19:43 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:19:43 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:2 call_cycle:8 21:19:43 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:2 call_cycle:8 2243.0390 -15801.0370 03/08/17 21:15:11 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 21:19:43 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:19:43 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:2 call_cycle:8 21:19:43 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:2 call_cycle:8 2243.0390 -15801.0370 03/08/17 21:15:11 UTC QUIT_COMMAND) to hramm@hawaii.edu 21:19:43 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:19:43 08 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:19:49 08 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:19:49 08 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:19:49 08 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:19:49 08 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:19:49 08 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:19:49 08 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:19:51 08 Mar 2017 UTC: WARNING: Base.py(1624): No dives to process 21:19:51 08 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [] 21:19:51 08 Mar 2017 UTC: INFO: Base.py(1780): No dives found to profile 21:19:51 08 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.345.8 21:19:51 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:19:51 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:19:51 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:19:52 08 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:19:52 08 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:19:52 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:19:52 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:19:52 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:19:52 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:19:52 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:19:52 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:19:52 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:19:52 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:19:52 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:19:52 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:19:52 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:19:52 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:19:52 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:19:52 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:19:52 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:19:52 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:19:52 08 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:19:52 08 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:19:52 08 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:19:52 08 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:19:52 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:19:52 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:19:52 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:19:52 08 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 21:19:52 08 Mar 2017 UTC 21:24:32 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 12862 21:24:32 08 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:25:29 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 12972 21:25:29 08 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:25:29 08 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:25:29 08 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:25:29 08 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:25:29 08 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170308112528 ] 21:25:29 08 Mar 2017 UTC: INFO: Base.py(1333): PID:12979 21:25:29 08 Mar 2017 UTC: INFO: Base.py(1375): Started processing 21:25:29 08 Mar 2017 UTC 21:25:29 08 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:25:30 08 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:25:30 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:25:30 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:25:30 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:9 21:25:30 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:9 2242.9990 -15801.0730 03/08/17 21:23:05 UTC QUIT_COMMAND) to 8082269543@txt.att.net 21:25:30 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:25:30 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:9 21:25:30 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:9 2242.9990 -15801.0730 03/08/17 21:23:05 UTC QUIT_COMMAND) to 8087808045@vtext.com 21:25:30 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:25:30 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:9 21:25:30 08 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:345 calls_made:1 call_cycle:9 2242.9990 -15801.0730 03/08/17 21:23:05 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:25:30 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:9 21:25:30 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:9 2242.9990 -15801.0730 03/08/17 21:23:05 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:25:30 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:25:30 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:9 21:25:30 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:9 2242.9990 -15801.0730 03/08/17 21:23:05 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 21:25:30 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:25:30 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:9 21:25:30 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:9 2242.9990 -15801.0730 03/08/17 21:23:05 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 21:25:30 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:25:30 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:9 21:25:30 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:9 2242.9990 -15801.0730 03/08/17 21:23:05 UTC QUIT_COMMAND) to hramm@hawaii.edu 21:25:30 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:25:30 08 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:25:36 08 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:25:37 08 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:25:37 08 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:25:37 08 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:25:37 08 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:25:37 08 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:25:38 08 Mar 2017 UTC: WARNING: Base.py(1624): No dives to process 21:25:38 08 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [] 21:25:38 08 Mar 2017 UTC: INFO: Base.py(1780): No dives found to profile 21:25:38 08 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.345.9 21:25:38 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:25:38 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:25:38 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:25:39 08 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:25:39 08 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:25:39 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:25:39 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:25:39 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:25:39 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:25:39 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:25:39 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:25:39 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:25:39 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:25:39 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:25:39 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:25:39 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:25:39 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:25:39 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:25:39 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:25:39 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:25:39 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:25:39 08 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:25:39 08 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:25:39 08 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:25:39 08 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:25:39 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:25:39 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:25:39 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:25:39 08 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 21:25:39 08 Mar 2017 UTC 21:30:33 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 13424 21:30:33 08 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:31:27 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 13534 21:31:27 08 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:31:27 08 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:31:27 08 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:31:27 08 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:31:27 08 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170308113127 ] 21:31:27 08 Mar 2017 UTC: INFO: Base.py(1333): PID:13541 21:31:27 08 Mar 2017 UTC: INFO: Base.py(1375): Started processing 21:31:27 08 Mar 2017 UTC 21:31:27 08 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:31:28 08 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:31:28 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:31:28 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:31:28 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:10 21:31:28 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:10 2242.9700 -15801.1060 03/08/17 21:28:53 UTC QUIT_COMMAND) to 8082269543@txt.att.net 21:31:28 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:31:28 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:10 21:31:28 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:10 2242.9700 -15801.1060 03/08/17 21:28:53 UTC QUIT_COMMAND) to 8087808045@vtext.com 21:31:28 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:31:28 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:10 21:31:28 08 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:345 calls_made:1 call_cycle:10 2242.9700 -15801.1060 03/08/17 21:28:53 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:31:28 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:10 21:31:28 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:10 2242.9700 -15801.1060 03/08/17 21:28:53 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:31:29 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:31:29 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:10 21:31:29 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:10 2242.9700 -15801.1060 03/08/17 21:28:53 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 21:31:29 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:31:29 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:10 21:31:29 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:10 2242.9700 -15801.1060 03/08/17 21:28:53 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 21:31:29 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:31:29 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:10 21:31:29 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:10 2242.9700 -15801.1060 03/08/17 21:28:53 UTC QUIT_COMMAND) to hramm@hawaii.edu 21:31:29 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:31:29 08 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:31:34 08 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:31:35 08 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:31:35 08 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:31:35 08 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:31:35 08 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:31:35 08 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:31:37 08 Mar 2017 UTC: WARNING: Base.py(1624): No dives to process 21:31:37 08 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [] 21:31:37 08 Mar 2017 UTC: INFO: Base.py(1780): No dives found to profile 21:31:37 08 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.345.10 21:31:37 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:31:37 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:31:37 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:31:37 08 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:31:37 08 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:31:37 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:31:37 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:31:37 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:31:37 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:31:37 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:31:37 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:31:37 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:31:37 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:31:37 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:31:37 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:31:37 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:31:37 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:31:37 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:31:37 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:31:37 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:31:37 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:31:37 08 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:31:37 08 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:31:37 08 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:31:37 08 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:31:37 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:31:37 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:31:37 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:31:37 08 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 21:31:37 08 Mar 2017 UTC 21:36:30 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 13833 21:36:30 08 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:37:25 08 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 13946 21:37:25 08 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:37:25 08 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:37:25 08 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:37:25 08 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:37:25 08 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170308113724 ] 21:37:25 08 Mar 2017 UTC: INFO: Base.py(1333): PID:13954 21:37:25 08 Mar 2017 UTC: INFO: Base.py(1375): Started processing 21:37:25 08 Mar 2017 UTC 21:37:25 08 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:37:26 08 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:37:26 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:37:26 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:37:26 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:11 21:37:26 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:11 2242.9560 -15801.1340 03/08/17 21:34:53 UTC QUIT_COMMAND) to 8082269543@txt.att.net 21:37:26 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:37:26 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:11 21:37:26 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:11 2242.9560 -15801.1340 03/08/17 21:34:53 UTC QUIT_COMMAND) to 8087808045@vtext.com 21:37:26 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:37:26 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:11 21:37:26 08 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:345 calls_made:1 call_cycle:11 2242.9560 -15801.1340 03/08/17 21:34:53 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:37:26 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:11 21:37:26 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:11 2242.9560 -15801.1340 03/08/17 21:34:53 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:37:26 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:37:26 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:11 21:37:26 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:11 2242.9560 -15801.1340 03/08/17 21:34:53 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 21:37:26 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:37:26 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:11 21:37:26 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:11 2242.9560 -15801.1340 03/08/17 21:34:53 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 21:37:26 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:37:26 08 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:345 calls_made:1 call_cycle:11 21:37:26 08 Mar 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:345 calls_made:1 call_cycle:11 2242.9560 -15801.1340 03/08/17 21:34:53 UTC QUIT_COMMAND) to hramm@hawaii.edu 21:37:26 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:37:26 08 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:37:31 08 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:37:32 08 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:37:32 08 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:37:32 08 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:37:32 08 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:37:32 08 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:37:34 08 Mar 2017 UTC: WARNING: Base.py(1624): No dives to process 21:37:34 08 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [] 21:37:34 08 Mar 2017 UTC: INFO: Base.py(1780): No dives found to profile 21:37:34 08 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.345.11 21:37:34 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:37:34 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:37:34 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:37:34 08 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:37:34 08 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:37:34 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:37:34 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:37:34 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:37:34 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:37:34 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:37:34 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:37:34 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:37:34 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:37:34 08 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:37:34 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:37:34 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:37:34 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:37:34 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:37:34 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:37:34 08 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:37:34 08 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:37:34 08 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:37:34 08 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:37:34 08 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:37:34 08 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:37:34 08 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:37:34 08 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:37:34 08 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:37:34 08 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 21:37:34 08 Mar 2017 UTC 01:18:31 09 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 23655 01:18:31 09 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:21:42 09 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 23916 01:21:42 09 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:21:42 09 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:21:42 09 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:21:42 09 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:21:42 09 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170308152142 ] 01:21:42 09 Mar 2017 UTC: INFO: Base.py(1333): PID:23923 01:21:42 09 Mar 2017 UTC: INFO: Base.py(1375): Started processing 01:21:42 09 Mar 2017 UTC 01:21:42 09 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:21:43 09 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:21:43 09 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:21:43 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:21:43 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:346 calls_made:1 call_cycle:0 01:21:43 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:21:43 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:346 calls_made:1 call_cycle:0 01:21:43 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:21:43 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:346 calls_made:1 call_cycle:0 01:21:43 09 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:346 calls_made:1 call_cycle:0 2243.6690 -15801.2050 03/09/17 01:16:10 UTC) to sdrifter@soest.hawaii.edu 01:21:44 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:346 calls_made:1 call_cycle:0 01:21:44 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:21:44 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:346 calls_made:1 call_cycle:0 01:21:44 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:21:44 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:346 calls_made:1 call_cycle:0 01:21:44 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:21:44 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:346 calls_made:1 call_cycle:0 01:21:44 09 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:21:44 09 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:21:49 09 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:21:50 09 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:21:50 09 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:21:50 09 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:21:50 09 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:21:50 09 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:21:52 09 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0346lz 01:21:52 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0346lz.x00 01:21:52 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0346lz.x01 01:21:52 09 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0346lz.r in process_file_group 01:21:52 09 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260346.log 01:21:52 09 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:21:52 09 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0346dz 01:21:52 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0346dz.x00 01:21:52 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0346dz.x01 01:21:52 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0346dz.x02 01:21:52 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0346dz.x03 01:21:52 09 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0346dz.r in process_file_group 01:21:52 09 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [346] 01:21:52 09 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [346] 01:21:53 09 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260346) for profiles 01:21:53 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:21:53 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/659) 657:659 to QC_BAD because CT out of water 01:21:53 09 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.052m) 01:21:53 09 Mar 2017 UTC: INFO: QC.py(365): Changed (14/659) 205 207 212 229 232 243 256 264 268 269 284 285 ... to QC_PROBABLY_BAD because raw temperature spikes 01:21:53 09 Mar 2017 UTC: INFO: QC.py(377): Changed (1/659) 659 to QC_BAD because raw salinity below bound 01:21:53 09 Mar 2017 UTC: INFO: QC.py(408): Changed (10/659) 205 207 212 232 243 268 269 274 284 292 to QC_PROBABLY_BAD because raw conductivity spikes 01:21:53 09 Mar 2017 UTC: INFO: QC.py(180): Changed (14/659) 205 207 212 229 232 243 256 264 268 269 284 285 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:21:53 09 Mar 2017 UTC: INFO: QC.py(180): Changed (1/659) 274 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 01:21:53 09 Mar 2017 UTC: INFO: QC.py(180): Changed (2/659) 657 658 to QC_BAD because changed raw cond implies changed raw salinity 01:21:53 09 Mar 2017 UTC: INFO: QC.py(365): Changed (14/659) 205 207 212 229 232 243 256 264 268 269 284 285 ... to QC_INTERPOLATED because temperature spikes 01:21:53 09 Mar 2017 UTC: INFO: QC.py(377): Changed (1/659) 659 to QC_BAD because salinity below bound 01:21:53 09 Mar 2017 UTC: INFO: QC.py(408): Changed (10/659) 205 207 212 232 243 268 269 274 284 292 to QC_INTERPOLATED because conductivity spikes 01:21:53 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/659) 249:253 to QC_BAD because slow apogee CT flow 01:21:53 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/659) 1:6 to QC_BAD because prior to dive start 01:21:53 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/659) 656 to QC_BAD because end of climb 01:21:53 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/659) 1:6 249:253 656:659 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:21:53 09 Mar 2017 UTC: INFO: QC.py(180): Changed (15/659) 1:6 249:253 656:659 to QC_BAD because changed corrected salin implies changed speed 01:21:53 09 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:21:53 09 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 346 interp_salinity data_points in_between 370 378 % suspect thermal-inertia points 370 371 01:21:53 09 Mar 2017 UTC: INFO: QC.py(180): Changed (13/659) 205 207 212 229 232 243 256 264 268 269 284 285 ... to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 01:21:53 09 Mar 2017 UTC: INFO: QC.py(180): Changed (1/659) 274 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 01:21:53 09 Mar 2017 UTC: INFO: QC.py(180): Changed (13/659) 205 207 212 229 232 243 256 264 268 269 284 285 ... to QC_INTERPOLATED because changed corrected temp implies changed speed 01:21:53 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.20 cm/s 01:21:53 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.11 cm/s 01:21:53 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:21:53 09 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (193/659) 135 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:21:53 09 Mar 2017 UTC: INFO: QC.py(180): Changed (2/659) 256 658 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 01:21:53 09 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (193/659) 135 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 01:21:54 09 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (3/659) 656 657 659 to QC_BAD because bad aa4330 oyxgen 01:21:54 09 Mar 2017 UTC: INFO: QC.py(180): Changed (2/659) 256 658 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 01:21:54 09 Mar 2017 UTC: INFO: QC.py(180): Changed (12/659) 1:6 249:253 658 to QC_BAD because changed salinity implies changed optode oxygen 01:21:54 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:21:54 09 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:21:54 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:21:54 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 346: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.28% reduction 01:21:54 09 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.346 01:21:54 09 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:21:54 09 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:21:54 09 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:21:54 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:21:54 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 01:24:44 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 01:24:45 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 01:24:45 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 01:25:18 09 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:25:18 09 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:25:18 09 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:25:18 09 Mar 2017 UTC /home/sg626/p6260346.log /home/sg626/p6260346.eng /home/sg626/p6260346.asc /home/sg626/p6260346.pro /home/sg626/p6260346.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 01:25:18 09 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:25:18 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:25:18 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:25:18 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:25:18 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:25:18 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:25:18 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:25:18 09 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:25:18 09 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:25:18 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:25:18 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:25:18 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:25:18 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:25:18 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:25:18 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:25:18 09 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:25:18 09 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:25:18 09 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:25:18 09 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:25:18 09 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:25:18 09 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:25:18 09 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:25:18 09 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:25:18 09 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 01:25:18 09 Mar 2017 UTC 05:07:05 09 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 1163 05:07:05 09 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:10:05 09 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 1369 05:10:05 09 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:10:05 09 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:10:05 09 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:10:05 09 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:10:05 09 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170308191004 ] 05:10:05 09 Mar 2017 UTC: INFO: Base.py(1333): PID:1376 05:10:05 09 Mar 2017 UTC: INFO: Base.py(1375): Started processing 05:10:05 09 Mar 2017 UTC 05:10:05 09 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:10:06 09 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:10:06 09 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:10:06 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:10:06 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:347 calls_made:1 call_cycle:0 05:10:06 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:10:06 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:347 calls_made:1 call_cycle:0 05:10:06 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:10:06 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:347 calls_made:1 call_cycle:0 05:10:06 09 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:347 calls_made:1 call_cycle:0 2244.0620 -15800.6230 03/09/17 05:04:48 UTC) to sdrifter@soest.hawaii.edu 05:10:06 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:347 calls_made:1 call_cycle:0 05:10:06 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:10:06 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:347 calls_made:1 call_cycle:0 05:10:06 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:10:06 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:347 calls_made:1 call_cycle:0 05:10:06 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:10:06 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:347 calls_made:1 call_cycle:0 05:10:06 09 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:10:06 09 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:10:11 09 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:10:12 09 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:10:12 09 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:10:12 09 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:10:12 09 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:10:12 09 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:10:14 09 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0347lz 05:10:14 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0347lz.x00 05:10:14 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0347lz.x01 05:10:14 09 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0347lz.r in process_file_group 05:10:14 09 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260347.log 05:10:14 09 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:10:14 09 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0347dz 05:10:14 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0347dz.x00 05:10:14 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0347dz.x01 05:10:14 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0347dz.x02 05:10:14 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0347dz.x03 05:10:14 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0347dz.x04 05:10:14 09 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0347dz.r in process_file_group 05:10:15 09 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [347] 05:10:15 09 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [347] 05:10:15 09 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260347) for profiles 05:10:15 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:10:15 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/670) 668:670 to QC_BAD because CT out of water 05:10:15 09 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.120m) 05:10:15 09 Mar 2017 UTC: INFO: QC.py(365): Changed (18/670) 207 209 221 225 231:233 239 248 250 260 266 279 ... to QC_PROBABLY_BAD because raw temperature spikes 05:10:15 09 Mar 2017 UTC: INFO: QC.py(377): Changed (1/670) 668 to QC_BAD because raw salinity below bound 05:10:15 09 Mar 2017 UTC: INFO: QC.py(408): Changed (15/670) 196 207 209 221 225 231 233 239 248 260 279 281 ... to QC_PROBABLY_BAD because raw conductivity spikes 05:10:15 09 Mar 2017 UTC: INFO: QC.py(180): Changed (18/670) 207 209 221 225 231:233 239 248 250 260 266 279 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:10:15 09 Mar 2017 UTC: INFO: QC.py(180): Changed (1/670) 196 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 05:10:15 09 Mar 2017 UTC: INFO: QC.py(180): Changed (2/670) 669 670 to QC_BAD because changed raw cond implies changed raw salinity 05:10:15 09 Mar 2017 UTC: INFO: QC.py(365): Changed (18/670) 207 209 221 225 231:233 239 248 250 260 266 279 ... to QC_INTERPOLATED because temperature spikes 05:10:15 09 Mar 2017 UTC: INFO: QC.py(377): Changed (1/670) 668 to QC_BAD because salinity below bound 05:10:15 09 Mar 2017 UTC: INFO: QC.py(408): Changed (15/670) 196 207 209 221 225 231 233 239 248 260 279 281 ... to QC_INTERPOLATED because conductivity spikes 05:10:15 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/670) 255:259 to QC_BAD because slow apogee CT flow 05:10:15 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/670) 1:6 to QC_BAD because prior to dive start 05:10:15 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/670) 667 to QC_BAD because end of climb 05:10:15 09 Mar 2017 UTC: INFO: QC.py(488): Changed (1/670) 260 to QC_PROBABLY_BAD because bad interpolation anchors 05:10:15 09 Mar 2017 UTC: INFO: QC.py(489): SUGGESTION: 347 bad_conductivity data_points in_between 258 260 % bad interpolation anchors 05:10:15 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/670) 1:6 255:259 667:670 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:10:15 09 Mar 2017 UTC: INFO: QC.py(180): Changed (15/670) 1:6 255:259 667:670 to QC_BAD because changed corrected salin implies changed speed 05:10:16 09 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:10:16 09 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 347 interp_salinity data_points in_between 336 362 % suspect thermal-inertia points 349 05:10:16 09 Mar 2017 UTC: INFO: QC.py(180): Changed (17/670) 207 209 221 225 231:233 239 248 250 260 266 279 ... to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 05:10:16 09 Mar 2017 UTC: INFO: QC.py(180): Changed (1/670) 260 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 05:10:16 09 Mar 2017 UTC: INFO: QC.py(180): Changed (1/670) 196 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 05:10:16 09 Mar 2017 UTC: INFO: QC.py(180): Changed (17/670) 207 209 221 225 231:233 239 248 250 260 266 279 ... to QC_INTERPOLATED because changed corrected temp implies changed speed 05:10:16 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.18 cm/s 05:10:16 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.33 cm/s 05:10:16 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:10:16 09 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (196/670) 135 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:10:16 09 Mar 2017 UTC: INFO: QC.py(180): Changed (5/670) 221 231 266 281 669 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:10:16 09 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (196/670) 135 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:10:16 09 Mar 2017 UTC: INFO: QC.py(180): Changed (5/670) 221 231 266 281 669 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:10:16 09 Mar 2017 UTC: INFO: QC.py(180): Changed (15/670) 1:6 255:259 667:670 to QC_BAD because changed salinity implies changed optode oxygen 05:10:16 09 Mar 2017 UTC: INFO: QC.py(180): Changed (1/670) 196 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 05:10:16 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:10:16 09 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:10:16 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 05:10:16 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 347: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.24% reduction 05:10:16 09 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.347 05:10:16 09 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:10:16 09 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:10:16 09 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:10:17 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 05:10:17 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 05:13:06 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 05:13:07 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 05:13:07 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 05:13:40 09 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:13:40 09 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:13:40 09 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:13:40 09 Mar 2017 UTC /home/sg626/p6260347.log /home/sg626/p6260347.eng /home/sg626/p6260347.asc /home/sg626/p6260347.pro /home/sg626/p6260347.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 05:13:40 09 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:13:40 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:13:40 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:13:40 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:13:40 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:13:40 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:13:40 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:13:40 09 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:13:40 09 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:13:40 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:13:40 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:13:40 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:13:40 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:13:40 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:13:40 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:13:40 09 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:13:40 09 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:13:40 09 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:13:40 09 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:13:40 09 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:13:40 09 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:13:40 09 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:13:40 09 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:13:40 09 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 05:13:40 09 Mar 2017 UTC 08:45:58 09 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 8814 08:45:58 09 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:48:50 09 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9078 08:48:50 09 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:48:50 09 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:48:50 09 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:48:50 09 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:48:50 09 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170308224850 ] 08:48:50 09 Mar 2017 UTC: INFO: Base.py(1333): PID:9086 08:48:51 09 Mar 2017 UTC: INFO: Base.py(1375): Started processing 08:48:51 09 Mar 2017 UTC 08:48:51 09 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:48:52 09 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:48:52 09 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:48:52 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:48:52 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:348 calls_made:1 call_cycle:0 08:48:52 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:48:52 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:348 calls_made:1 call_cycle:0 08:48:52 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:48:52 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:348 calls_made:1 call_cycle:0 08:48:52 09 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:348 calls_made:1 call_cycle:0 2244.2660 -15800.0660 03/09/17 08:43:49 UTC) to sdrifter@soest.hawaii.edu 08:48:52 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:348 calls_made:1 call_cycle:0 08:48:52 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:48:52 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:348 calls_made:1 call_cycle:0 08:48:52 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:48:52 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:348 calls_made:1 call_cycle:0 08:48:52 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:48:52 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:348 calls_made:1 call_cycle:0 08:48:52 09 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:48:52 09 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:48:57 09 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:48:58 09 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:48:58 09 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:48:58 09 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:48:58 09 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:48:58 09 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:49:00 09 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0348lz 08:49:00 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0348lz.x00 08:49:00 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0348lz.x01 08:49:00 09 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0348lz.r in process_file_group 08:49:00 09 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260348.log 08:49:00 09 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:49:00 09 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0348dz 08:49:00 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0348dz.x00 08:49:00 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0348dz.x01 08:49:00 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0348dz.x02 08:49:00 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0348dz.x03 08:49:00 09 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0348dz.r in process_file_group 08:49:00 09 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [348] 08:49:00 09 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [348] 08:49:00 09 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260348) for profiles 08:49:00 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:49:00 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/658) 657 658 to QC_BAD because CT out of water 08:49:00 09 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.111m) 08:49:00 09 Mar 2017 UTC: INFO: QC.py(365): Changed (12/658) 2 204 219 224 225 246 254 262 267 268 272 287 to QC_PROBABLY_BAD because raw temperature spikes 08:49:00 09 Mar 2017 UTC: INFO: QC.py(377): Changed (1/658) 658 to QC_BAD because raw salinity below bound 08:49:00 09 Mar 2017 UTC: INFO: QC.py(408): Changed (9/658) 204 224 225 246 254 262 267 268 287 to QC_PROBABLY_BAD because raw conductivity spikes 08:49:00 09 Mar 2017 UTC: INFO: QC.py(180): Changed (12/658) 2 204 219 224 225 246 254 262 267 268 272 287 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:49:00 09 Mar 2017 UTC: INFO: QC.py(180): Changed (1/658) 657 to QC_BAD because changed raw cond implies changed raw salinity 08:49:00 09 Mar 2017 UTC: INFO: QC.py(365): Changed (12/658) 2 204 219 224 225 246 254 262 267 268 272 287 to QC_INTERPOLATED because temperature spikes 08:49:00 09 Mar 2017 UTC: INFO: QC.py(377): Changed (1/658) 658 to QC_BAD because salinity below bound 08:49:00 09 Mar 2017 UTC: INFO: QC.py(408): Changed (9/658) 204 224 225 246 254 262 267 268 287 to QC_INTERPOLATED because conductivity spikes 08:49:00 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/658) 249:253 to QC_BAD because slow apogee CT flow 08:49:01 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/658) 1:6 to QC_BAD because prior to dive start 08:49:01 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/658) 656 to QC_BAD because end of climb 08:49:01 09 Mar 2017 UTC: INFO: QC.py(488): Changed (1/658) 254 to QC_PROBABLY_BAD because bad interpolation anchors 08:49:01 09 Mar 2017 UTC: INFO: QC.py(489): SUGGESTION: 348 bad_conductivity data_points in_between 252 254 % bad interpolation anchors 08:49:01 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/658) 1:6 249:253 656:658 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:49:01 09 Mar 2017 UTC: INFO: QC.py(180): Changed (14/658) 1:6 249:253 656:658 to QC_BAD because changed corrected salin implies changed speed 08:49:01 09 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:49:01 09 Mar 2017 UTC: INFO: QC.py(180): Changed (11/658) 204 219 224 225 246 254 262 267 268 272 287 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 08:49:01 09 Mar 2017 UTC: INFO: QC.py(180): Changed (1/658) 254 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 08:49:01 09 Mar 2017 UTC: INFO: QC.py(180): Changed (11/658) 204 219 224 225 246 254 262 267 268 272 287 to QC_INTERPOLATED because changed corrected temp implies changed speed 08:49:01 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.05 cm/s 08:49:01 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.98 cm/s 08:49:01 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:49:01 09 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (189/658) 135 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:49:01 09 Mar 2017 UTC: INFO: QC.py(180): Changed (2/658) 2 246 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:49:01 09 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (189/658) 135 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:49:01 09 Mar 2017 UTC: INFO: QC.py(180): Changed (2/658) 2 246 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:49:01 09 Mar 2017 UTC: INFO: QC.py(180): Changed (14/658) 1:6 249:253 656:658 to QC_BAD because changed salinity implies changed optode oxygen 08:49:01 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:49:01 09 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:49:01 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 08:49:02 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 348: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.13% reduction 08:49:02 09 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.348 08:49:02 09 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:49:02 09 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:49:02 09 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:49:02 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 08:49:02 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 08:51:54 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 08:51:55 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 08:51:55 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 08:52:28 09 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:52:28 09 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:52:28 09 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:52:28 09 Mar 2017 UTC /home/sg626/p6260348.log /home/sg626/p6260348.eng /home/sg626/p6260348.asc /home/sg626/p6260348.pro /home/sg626/p6260348.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 08:52:28 09 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:52:28 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:52:28 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:52:28 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:52:28 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:52:28 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:52:28 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:52:28 09 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:52:28 09 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:52:28 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:52:28 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:52:28 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:52:28 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:52:28 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:52:28 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:52:28 09 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:52:28 09 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:52:28 09 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:52:28 09 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:52:28 09 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:52:28 09 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:52:28 09 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:52:28 09 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:52:28 09 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 08:52:28 09 Mar 2017 UTC 12:27:04 09 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 18948 12:27:04 09 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:29:58 09 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 19124 12:29:58 09 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:29:58 09 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:29:58 09 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:29:58 09 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:29:58 09 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170309022958 ] 12:29:58 09 Mar 2017 UTC: INFO: Base.py(1333): PID:19131 12:29:58 09 Mar 2017 UTC: INFO: Base.py(1375): Started processing 12:29:58 09 Mar 2017 UTC 12:29:58 09 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:29:59 09 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:29:59 09 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:29:59 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:29:59 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:349 calls_made:1 call_cycle:0 12:29:59 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:29:59 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:349 calls_made:1 call_cycle:0 12:29:59 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:29:59 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:349 calls_made:1 call_cycle:0 12:29:59 09 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:349 calls_made:1 call_cycle:0 2245.2560 -15759.9080 03/09/17 12:24:54 UTC) to sdrifter@soest.hawaii.edu 12:30:00 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:349 calls_made:1 call_cycle:0 12:30:00 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:30:00 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:349 calls_made:1 call_cycle:0 12:30:00 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:30:00 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:349 calls_made:1 call_cycle:0 12:30:00 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:30:00 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:349 calls_made:1 call_cycle:0 12:30:00 09 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:30:00 09 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:30:05 09 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:30:06 09 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:30:06 09 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:30:06 09 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:30:06 09 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:30:06 09 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:30:08 09 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0349lz 12:30:08 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0349lz.x00 12:30:08 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0349lz.x01 12:30:08 09 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0349lz.r in process_file_group 12:30:08 09 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260349.log 12:30:08 09 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:30:08 09 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0349dz 12:30:08 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0349dz.x00 12:30:08 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0349dz.x01 12:30:08 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0349dz.x02 12:30:08 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0349dz.x03 12:30:08 09 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0349dz.r in process_file_group 12:30:09 09 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [349] 12:30:09 09 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [349] 12:30:09 09 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260349) for profiles 12:30:09 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 12:30:09 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/639) 638 639 to QC_BAD because CT out of water 12:30:09 09 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.138m) 12:30:09 09 Mar 2017 UTC: INFO: QC.py(365): Changed (19/639) 3 205 206 214 227:230 233 262:265 275:277 282 283 ... to QC_PROBABLY_BAD because raw temperature spikes 12:30:09 09 Mar 2017 UTC: INFO: QC.py(377): Changed (2/639) 638 639 to QC_BAD because raw salinity below bound 12:30:09 09 Mar 2017 UTC: INFO: QC.py(408): Changed (15/639) 205 206 214 227:230 233 264 265 272 277 282 283 ... to QC_PROBABLY_BAD because raw conductivity spikes 12:30:09 09 Mar 2017 UTC: INFO: QC.py(180): Changed (19/639) 3 205 206 214 227:230 233 262:265 275:277 282 283 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 12:30:09 09 Mar 2017 UTC: INFO: QC.py(180): Changed (1/639) 272 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 12:30:09 09 Mar 2017 UTC: INFO: QC.py(365): Changed (19/639) 3 205 206 214 227:230 233 262:265 275:277 282 283 ... to QC_INTERPOLATED because temperature spikes 12:30:09 09 Mar 2017 UTC: INFO: QC.py(377): Changed (2/639) 638 639 to QC_BAD because salinity below bound 12:30:09 09 Mar 2017 UTC: INFO: QC.py(408): Changed (15/639) 205 206 214 227:230 233 264 265 272 277 282 283 ... to QC_INTERPOLATED because conductivity spikes 12:30:09 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/639) 247:251 to QC_BAD because slow apogee CT flow 12:30:09 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/639) 1:6 to QC_BAD because prior to dive start 12:30:09 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/639) 637 to QC_BAD because end of climb 12:30:09 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/639) 1:6 247:251 637:639 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:30:09 09 Mar 2017 UTC: INFO: QC.py(180): Changed (14/639) 1:6 247:251 637:639 to QC_BAD because changed corrected salin implies changed speed 12:30:10 09 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:30:10 09 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 349 interp_salinity data_points in_between 323 382 % suspect thermal-inertia points 345 346 12:30:10 09 Mar 2017 UTC: INFO: QC.py(180): Changed (18/639) 205 206 214 227:230 233 262:265 275:277 282 283 ... to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 12:30:10 09 Mar 2017 UTC: INFO: QC.py(180): Changed (1/639) 272 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 12:30:10 09 Mar 2017 UTC: INFO: QC.py(180): Changed (18/639) 205 206 214 227:230 233 262:265 275:277 282 283 ... to QC_INTERPOLATED because changed corrected temp implies changed speed 12:30:10 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.81 cm/s 12:30:10 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.30 cm/s 12:30:10 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:30:10 09 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (194/639) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:30:10 09 Mar 2017 UTC: INFO: QC.py(180): Changed (4/639) 3 206 276 286 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 12:30:10 09 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (194/639) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 12:30:10 09 Mar 2017 UTC: INFO: QC.py(180): Changed (4/639) 3 206 276 286 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 12:30:10 09 Mar 2017 UTC: INFO: QC.py(180): Changed (14/639) 1:6 247:251 637:639 to QC_BAD because changed salinity implies changed optode oxygen 12:30:10 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:30:10 09 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:30:10 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 12:30:10 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 349: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.19% reduction 12:30:10 09 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.349 12:30:10 09 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:30:10 09 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:30:10 09 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:30:10 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 12:30:10 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 12:33:00 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 12:33:01 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 12:33:01 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 12:33:35 09 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:33:35 09 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:33:35 09 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 12:33:35 09 Mar 2017 UTC /home/sg626/p6260349.log /home/sg626/p6260349.eng /home/sg626/p6260349.asc /home/sg626/p6260349.pro /home/sg626/p6260349.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 12:33:35 09 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:33:35 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:33:35 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:33:35 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:33:35 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:33:35 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:33:35 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:33:35 09 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:33:35 09 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:33:35 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:33:35 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:33:35 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:33:35 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:33:35 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:33:35 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:33:35 09 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:33:35 09 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 12:33:35 09 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 12:33:35 09 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 12:33:35 09 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 12:33:35 09 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:33:35 09 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:33:35 09 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:33:35 09 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 12:33:35 09 Mar 2017 UTC 16:03:36 09 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 29132 16:03:37 09 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:06:26 09 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 29295 16:06:26 09 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:06:26 09 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:06:26 09 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:06:26 09 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:06:26 09 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170309060625 ] 16:06:26 09 Mar 2017 UTC: INFO: Base.py(1333): PID:29304 16:06:26 09 Mar 2017 UTC: INFO: Base.py(1375): Started processing 16:06:26 09 Mar 2017 UTC 16:06:26 09 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:06:27 09 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:06:27 09 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:06:27 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:06:27 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:350 calls_made:1 call_cycle:0 16:06:27 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:06:27 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:350 calls_made:1 call_cycle:0 16:06:27 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:06:27 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:350 calls_made:1 call_cycle:0 16:06:27 09 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:350 calls_made:1 call_cycle:0 2243.9020 -15800.4810 03/09/17 16:01:24 UTC) to sdrifter@soest.hawaii.edu 16:06:27 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:350 calls_made:1 call_cycle:0 16:06:27 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:06:27 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:350 calls_made:1 call_cycle:0 16:06:27 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:06:27 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:350 calls_made:1 call_cycle:0 16:06:27 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:06:27 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:350 calls_made:1 call_cycle:0 16:06:27 09 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:06:27 09 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:06:32 09 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:06:33 09 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:06:33 09 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:06:33 09 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:06:33 09 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:06:33 09 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:06:35 09 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0350lz 16:06:35 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0350lz.x00 16:06:35 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0350lz.x01 16:06:35 09 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0350lz.r in process_file_group 16:06:35 09 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260350.log 16:06:35 09 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:06:35 09 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0350dz 16:06:35 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0350dz.x00 16:06:35 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0350dz.x01 16:06:35 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0350dz.x02 16:06:35 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0350dz.x03 16:06:35 09 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0350dz.r in process_file_group 16:06:36 09 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [350] 16:06:36 09 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [350] 16:06:36 09 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260350) for profiles 16:06:36 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:06:36 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/645) 644 645 to QC_BAD because CT out of water 16:06:36 09 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.111m) 16:06:36 09 Mar 2017 UTC: INFO: QC.py(365): Changed (14/645) 2 3 189 205 209 218:222 251 258 259 270 to QC_PROBABLY_BAD because raw temperature spikes 16:06:36 09 Mar 2017 UTC: INFO: QC.py(377): Changed (1/645) 643 to QC_BAD because raw salinity below bound 16:06:36 09 Mar 2017 UTC: INFO: QC.py(388): Changed (1/645) 643 to QC_BAD because bad raw salinity indicates raw conductivity issues 16:06:36 09 Mar 2017 UTC: INFO: QC.py(408): Changed (10/645) 3 189 205 209 220:222 251 258 270 to QC_PROBABLY_BAD because raw conductivity spikes 16:06:36 09 Mar 2017 UTC: INFO: QC.py(180): Changed (14/645) 2 3 189 205 209 218:222 251 258 259 270 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:06:36 09 Mar 2017 UTC: INFO: QC.py(180): Changed (2/645) 644 645 to QC_BAD because changed raw cond implies changed raw salinity 16:06:36 09 Mar 2017 UTC: INFO: QC.py(365): Changed (14/645) 2 3 189 205 209 218:222 251 258 259 270 to QC_INTERPOLATED because temperature spikes 16:06:36 09 Mar 2017 UTC: INFO: QC.py(377): Changed (1/645) 643 to QC_BAD because salinity below bound 16:06:36 09 Mar 2017 UTC: INFO: QC.py(388): Changed (1/645) 643 to QC_BAD because bad salinity indicates conductivity issues 16:06:36 09 Mar 2017 UTC: INFO: QC.py(408): Changed (10/645) 3 189 205 209 220:222 251 258 270 to QC_INTERPOLATED because conductivity spikes 16:06:36 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/645) 240:244 to QC_BAD because slow apogee CT flow 16:06:36 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/645) 1:6 to QC_BAD because prior to dive start 16:06:36 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/645) 1:6 240:244 643:645 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:06:36 09 Mar 2017 UTC: INFO: QC.py(180): Changed (14/645) 1:6 240:244 643:645 to QC_BAD because changed corrected salin implies changed speed 16:06:37 09 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:06:37 09 Mar 2017 UTC: INFO: QC.py(180): Changed (12/645) 189 205 209 218:222 251 258 259 270 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 16:06:37 09 Mar 2017 UTC: INFO: QC.py(180): Changed (12/645) 189 205 209 218:222 251 258 259 270 to QC_INTERPOLATED because changed corrected temp implies changed speed 16:06:37 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.95 cm/s 16:06:37 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.11 cm/s 16:06:37 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:06:37 09 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (185/645) 130 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:06:37 09 Mar 2017 UTC: INFO: QC.py(180): Changed (4/645) 2 3 221 251 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:06:37 09 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (185/645) 130 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:06:37 09 Mar 2017 UTC: INFO: QC.py(180): Changed (4/645) 2 3 221 251 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:06:37 09 Mar 2017 UTC: INFO: QC.py(180): Changed (14/645) 1:6 240:244 643:645 to QC_BAD because changed salinity implies changed optode oxygen 16:06:37 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:06:37 09 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:06:37 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:06:37 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 350: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.17% reduction 16:06:37 09 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.350 16:06:37 09 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:06:37 09 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:06:37 09 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:06:37 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:06:37 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:09:31 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 16:09:32 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:09:32 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:10:06 09 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:10:06 09 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:10:06 09 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:10:06 09 Mar 2017 UTC /home/sg626/p6260350.log /home/sg626/p6260350.eng /home/sg626/p6260350.asc /home/sg626/p6260350.pro /home/sg626/p6260350.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:10:06 09 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:10:06 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:10:06 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:10:06 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:10:06 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:10:06 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:10:06 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:10:06 09 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:10:06 09 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:10:06 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:10:06 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:10:06 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:10:06 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:10:06 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:10:06 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:10:06 09 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:10:06 09 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:10:06 09 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:10:06 09 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:10:06 09 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:10:06 09 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:10:06 09 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:10:06 09 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:10:06 09 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 16:10:06 09 Mar 2017 UTC 19:33:32 09 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 4631 19:33:32 09 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:36:21 09 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 4756 19:36:21 09 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:36:21 09 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:36:21 09 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:36:21 09 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:36:21 09 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170309093620 ] 19:36:21 09 Mar 2017 UTC: INFO: Base.py(1333): PID:4763 19:36:21 09 Mar 2017 UTC: INFO: Base.py(1375): Started processing 19:36:21 09 Mar 2017 UTC 19:36:21 09 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:36:22 09 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:36:22 09 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:36:22 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:36:22 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:351 calls_made:1 call_cycle:0 19:36:22 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:36:22 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:351 calls_made:1 call_cycle:0 19:36:22 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:36:22 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:351 calls_made:1 call_cycle:0 19:36:22 09 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:351 calls_made:1 call_cycle:0 2244.6460 -15759.9880 03/09/17 19:31:20 UTC) to sdrifter@soest.hawaii.edu 19:36:22 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:351 calls_made:1 call_cycle:0 19:36:22 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:36:22 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:351 calls_made:1 call_cycle:0 19:36:22 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:36:22 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:351 calls_made:1 call_cycle:0 19:36:22 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:36:22 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:351 calls_made:1 call_cycle:0 19:36:22 09 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:36:22 09 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:36:27 09 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:36:28 09 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:36:28 09 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:36:28 09 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:36:28 09 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:36:28 09 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:36:30 09 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0351lz 19:36:30 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0351lz.x00 19:36:30 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0351lz.x01 19:36:30 09 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0351lz.r in process_file_group 19:36:30 09 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260351.log 19:36:30 09 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:36:30 09 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0351dz 19:36:30 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0351dz.x00 19:36:30 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0351dz.x01 19:36:30 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0351dz.x02 19:36:30 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0351dz.x03 19:36:30 09 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0351dz.r in process_file_group 19:36:31 09 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [351] 19:36:31 09 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [351] 19:36:31 09 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260351) for profiles 19:36:31 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 19:36:31 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/618) 616 617 to QC_BAD because CT out of water 19:36:31 09 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.095m) 19:36:31 09 Mar 2017 UTC: INFO: QC.py(365): Changed (10/618) 2 201 202 211 215 226 274 281 282 617 to QC_PROBABLY_BAD because raw temperature spikes 19:36:31 09 Mar 2017 UTC: INFO: QC.py(377): Changed (1/618) 617 to QC_BAD because raw salinity below bound 19:36:31 09 Mar 2017 UTC: INFO: QC.py(408): Changed (8/618) 201 211 215 225 226 274 281 282 to QC_PROBABLY_BAD because raw conductivity spikes 19:36:31 09 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <211 pt uncorrectable 905.7m SUSPECT weak conductivity anomaly n:-0.28 p:0.27> 19:36:31 09 Mar 2017 UTC: INFO: QC.py(180): Changed (9/618) 2 201 202 211 215 226 274 281 282 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:36:31 09 Mar 2017 UTC: INFO: QC.py(180): Changed (1/618) 225 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 19:36:31 09 Mar 2017 UTC: INFO: QC.py(180): Changed (1/618) 616 to QC_BAD because changed raw cond implies changed raw salinity 19:36:31 09 Mar 2017 UTC: INFO: QC.py(365): Changed (10/618) 2 201 202 211 215 226 274 281 282 617 to QC_INTERPOLATED because temperature spikes 19:36:31 09 Mar 2017 UTC: INFO: QC.py(377): Changed (1/618) 617 to QC_BAD because salinity below bound 19:36:31 09 Mar 2017 UTC: INFO: QC.py(408): Changed (8/618) 201 211 215 225 226 274 281 282 to QC_INTERPOLATED because conductivity spikes 19:36:31 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/618) 249:253 to QC_BAD because slow apogee CT flow 19:36:31 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/618) 1:6 to QC_BAD because prior to dive start 19:36:31 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/618) 615 618 to QC_BAD because end of climb 19:36:31 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/618) 1:6 249:253 615:618 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:36:31 09 Mar 2017 UTC: INFO: QC.py(180): Changed (15/618) 1:6 249:253 615:618 to QC_BAD because changed corrected salin implies changed speed 19:36:32 09 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:36:32 09 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 351 interp_salinity data_points in_between 327 354 % suspect thermal-inertia points 348 349 19:36:32 09 Mar 2017 UTC: INFO: QC.py(180): Changed (8/618) 201 202 211 215 226 274 281 282 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 19:36:32 09 Mar 2017 UTC: INFO: QC.py(180): Changed (1/618) 225 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 19:36:32 09 Mar 2017 UTC: INFO: QC.py(180): Changed (8/618) 201 202 211 215 226 274 281 282 to QC_INTERPOLATED because changed corrected temp implies changed speed 19:36:32 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.01 cm/s 19:36:32 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.99 cm/s 19:36:32 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:36:32 09 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (183/618) 139 140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:36:32 09 Mar 2017 UTC: INFO: QC.py(180): Changed (6/618) 2 201 211 226 281 617 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 19:36:32 09 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (183/618) 139 140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 19:36:32 09 Mar 2017 UTC: INFO: QC.py(180): Changed (6/618) 2 201 211 226 281 617 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 19:36:32 09 Mar 2017 UTC: INFO: QC.py(180): Changed (15/618) 1:6 249:253 615:618 to QC_BAD because changed salinity implies changed optode oxygen 19:36:32 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:36:32 09 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:36:32 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 19:36:32 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 351: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.43% reduction 19:36:32 09 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.351 19:36:32 09 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:36:32 09 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:36:32 09 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:36:32 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 19:36:32 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 19:39:25 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 19:39:27 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 19:39:27 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 19:40:00 09 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:40:00 09 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:40:00 09 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:40:00 09 Mar 2017 UTC /home/sg626/p6260351.log /home/sg626/p6260351.eng /home/sg626/p6260351.asc /home/sg626/p6260351.pro /home/sg626/p6260351.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 19:40:00 09 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:40:00 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:40:00 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:40:00 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:40:00 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:40:00 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:40:00 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:40:00 09 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:40:00 09 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:40:00 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:40:00 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:40:00 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:40:00 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:40:00 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:40:00 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:40:00 09 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:40:00 09 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:40:00 09 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:40:00 09 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:40:00 09 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:40:00 09 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:40:00 09 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:40:00 09 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:40:00 09 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 19:40:00 09 Mar 2017 UTC 23:14:00 09 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 10352 23:14:01 09 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 23:18:02 09 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 10490 23:18:02 09 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:18:02 09 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:18:02 09 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:18:02 09 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:18:02 09 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170309131801 ] 23:18:02 09 Mar 2017 UTC: INFO: Base.py(1333): PID:10497 23:18:02 09 Mar 2017 UTC: INFO: Base.py(1375): Started processing 23:18:02 09 Mar 2017 UTC 23:18:02 09 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:18:03 09 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:18:03 09 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:18:03 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:18:03 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:352 calls_made:1 call_cycle:0 23:18:03 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:18:03 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:352 calls_made:1 call_cycle:0 23:18:03 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:18:03 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:352 calls_made:1 call_cycle:0 23:18:03 09 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:352 calls_made:1 call_cycle:0 2242.4520 -15800.4290 03/09/17 23:11:30 UTC) to sdrifter@soest.hawaii.edu 23:18:03 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:352 calls_made:1 call_cycle:0 23:18:03 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:18:03 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:352 calls_made:1 call_cycle:0 23:18:03 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:18:03 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:352 calls_made:1 call_cycle:0 23:18:03 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:18:03 09 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:352 calls_made:1 call_cycle:0 23:18:03 09 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:18:03 09 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:18:08 09 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:18:09 09 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:18:09 09 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:18:09 09 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:18:09 09 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:18:09 09 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:18:11 09 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0352lz 23:18:11 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0352lz.x00 23:18:11 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0352lz.x01 23:18:11 09 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0352lz.r in process_file_group 23:18:11 09 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260352.log 23:18:11 09 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:18:11 09 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0352dz 23:18:11 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0352dz.x00 23:18:11 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0352dz.x01 23:18:11 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0352dz.x02 23:18:11 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0352dz.x03 23:18:11 09 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0352dz.x04 23:18:11 09 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0352dz.r in process_file_group 23:18:12 09 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [352] 23:18:12 09 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [352] 23:18:12 09 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260352) for profiles 23:18:12 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 23:18:12 09 Mar 2017 UTC: INFO: QC.py(365): Changed (13/666) 201 211 218 219 222:224 247 264:266 274 281 to QC_PROBABLY_BAD because raw temperature spikes 23:18:12 09 Mar 2017 UTC: INFO: QC.py(408): Changed (13/666) 3 201 211 218 222:224 264:266 274 281 283 to QC_PROBABLY_BAD because raw conductivity spikes 23:18:12 09 Mar 2017 UTC: INFO: QC.py(180): Changed (13/666) 201 211 218 219 222:224 247 264:266 274 281 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 23:18:12 09 Mar 2017 UTC: INFO: QC.py(180): Changed (2/666) 3 283 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 23:18:12 09 Mar 2017 UTC: INFO: QC.py(365): Changed (13/666) 201 211 218 219 222:224 247 264:266 274 281 to QC_INTERPOLATED because temperature spikes 23:18:12 09 Mar 2017 UTC: INFO: QC.py(408): Changed (13/666) 3 201 211 218 222:224 264:266 274 281 283 to QC_INTERPOLATED because conductivity spikes 23:18:12 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/666) 246:250 to QC_BAD because slow apogee CT flow 23:18:12 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/666) 1:6 to QC_BAD because prior to dive start 23:18:12 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/666) 665 666 to QC_BAD because end of climb 23:18:12 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/666) 1:6 246:250 665 666 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 23:18:12 09 Mar 2017 UTC: INFO: QC.py(180): Changed (13/666) 1:6 246:250 665 666 to QC_BAD because changed corrected salin implies changed speed 23:18:13 09 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 23:18:13 09 Mar 2017 UTC: INFO: QC.py(180): Changed (12/666) 201 211 218 219 222:224 264:266 274 281 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 23:18:13 09 Mar 2017 UTC: INFO: QC.py(180): Changed (1/666) 283 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 23:18:13 09 Mar 2017 UTC: INFO: QC.py(180): Changed (12/666) 201 211 218 219 222:224 264:266 274 281 to QC_INTERPOLATED because changed corrected temp implies changed speed 23:18:13 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.60 cm/s 23:18:13 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.12 cm/s 23:18:13 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 23:18:13 09 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (187/666) 133:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 23:18:13 09 Mar 2017 UTC: INFO: QC.py(180): Changed (4/666) 201 211 266 281 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 23:18:13 09 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (187/666) 133:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 23:18:13 09 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/666) 661 663 to QC_BAD because bad aa4330 oyxgen 23:18:13 09 Mar 2017 UTC: INFO: QC.py(180): Changed (4/666) 201 211 266 281 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 23:18:13 09 Mar 2017 UTC: INFO: QC.py(180): Changed (13/666) 1:6 246:250 665 666 to QC_BAD because changed salinity implies changed optode oxygen 23:18:13 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 23:18:13 09 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 23:18:13 09 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 23:18:13 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 352: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.95% reduction 23:18:13 09 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.352 23:18:13 09 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:18:13 09 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:18:13 09 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:18:14 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 23:18:14 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 23:21:06 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 23:21:08 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 23:21:08 09 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 23:21:41 09 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:21:41 09 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:21:41 09 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:21:41 09 Mar 2017 UTC /home/sg626/p6260352.log /home/sg626/p6260352.eng /home/sg626/p6260352.asc /home/sg626/p6260352.pro /home/sg626/p6260352.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 23:21:41 09 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:21:41 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:21:41 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:21:41 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:21:41 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:21:41 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:21:41 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:21:41 09 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:21:41 09 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:21:41 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:21:41 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:21:41 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:21:41 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:21:41 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:21:41 09 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:21:41 09 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:21:41 09 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:21:41 09 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:21:41 09 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:21:41 09 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:21:41 09 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:21:41 09 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:21:41 09 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:21:41 09 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 23:21:41 09 Mar 2017 UTC 03:01:23 10 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 16763 03:01:23 10 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:04:16 10 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 16890 03:04:16 10 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:04:16 10 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:04:16 10 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:04:16 10 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:04:16 10 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170309170416 ] 03:04:16 10 Mar 2017 UTC: INFO: Base.py(1333): PID:16898 03:04:17 10 Mar 2017 UTC: INFO: Base.py(1375): Started processing 03:04:17 10 Mar 2017 UTC 03:04:17 10 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:04:18 10 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:04:18 10 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:04:18 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:04:18 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:353 calls_made:1 call_cycle:0 03:04:18 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:04:18 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:353 calls_made:1 call_cycle:0 03:04:18 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:04:18 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:353 calls_made:1 call_cycle:0 03:04:18 10 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:353 calls_made:1 call_cycle:0 2243.2620 -15800.7800 03/10/17 02:59:10 UTC) to sdrifter@soest.hawaii.edu 03:04:18 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:353 calls_made:1 call_cycle:0 03:04:18 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:04:18 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:353 calls_made:1 call_cycle:0 03:04:18 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:04:18 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:353 calls_made:1 call_cycle:0 03:04:18 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:04:18 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:353 calls_made:1 call_cycle:0 03:04:18 10 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:04:18 10 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:04:23 10 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:04:24 10 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:04:24 10 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:04:24 10 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:04:24 10 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:04:24 10 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:04:26 10 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0353lz 03:04:26 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0353lz.x00 03:04:26 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0353lz.x01 03:04:26 10 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0353lz.r in process_file_group 03:04:26 10 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260353.log 03:04:26 10 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:04:26 10 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0353dz 03:04:26 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0353dz.x00 03:04:26 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0353dz.x01 03:04:26 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0353dz.x02 03:04:26 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0353dz.x03 03:04:26 10 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0353dz.r in process_file_group 03:04:26 10 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [353] 03:04:26 10 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [353] 03:04:27 10 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260353) for profiles 03:04:27 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 03:04:27 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/656) 654 656 to QC_BAD because CT out of water 03:04:27 10 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.043m) 03:04:27 10 Mar 2017 UTC: INFO: QC.py(365): Changed (18/656) 228 231 233 238 240 243 276 277 280 284:288 290 ... to QC_PROBABLY_BAD because raw temperature spikes 03:04:27 10 Mar 2017 UTC: INFO: QC.py(377): Changed (1/656) 656 to QC_BAD because raw salinity below bound 03:04:27 10 Mar 2017 UTC: INFO: QC.py(408): Changed (15/656) 228 231 233 240 243 244 276 277 280 284:287 290 ... to QC_PROBABLY_BAD because raw conductivity spikes 03:04:27 10 Mar 2017 UTC: INFO: QC.py(180): Changed (18/656) 228 231 233 238 240 243 276 277 280 284:288 290 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 03:04:27 10 Mar 2017 UTC: INFO: QC.py(180): Changed (1/656) 244 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 03:04:27 10 Mar 2017 UTC: INFO: QC.py(180): Changed (1/656) 654 to QC_BAD because changed raw cond implies changed raw salinity 03:04:27 10 Mar 2017 UTC: INFO: QC.py(365): Changed (18/656) 228 231 233 238 240 243 276 277 280 284:288 290 ... to QC_INTERPOLATED because temperature spikes 03:04:27 10 Mar 2017 UTC: INFO: QC.py(377): Changed (1/656) 656 to QC_BAD because salinity below bound 03:04:27 10 Mar 2017 UTC: INFO: QC.py(408): Changed (15/656) 228 231 233 240 243 244 276 277 280 284:287 290 ... to QC_INTERPOLATED because conductivity spikes 03:04:27 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/656) 261:265 to QC_BAD because slow apogee CT flow 03:04:27 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/656) 1:6 to QC_BAD because prior to dive start 03:04:27 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/656) 655 to QC_BAD because end of climb 03:04:27 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/656) 1:6 261:265 654:656 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:04:27 10 Mar 2017 UTC: INFO: QC.py(180): Changed (14/656) 1:6 261:265 654:656 to QC_BAD because changed corrected salin implies changed speed 03:04:27 10 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 03:04:27 10 Mar 2017 UTC: INFO: QC.py(180): Changed (16/656) 228 231 233 238 240 243 276 277 280 284:288 290 ... to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 03:04:28 10 Mar 2017 UTC: INFO: QC.py(180): Changed (1/656) 244 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 03:04:28 10 Mar 2017 UTC: INFO: QC.py(180): Changed (16/656) 228 231 233 238 240 243 276 277 280 284:288 290 ... to QC_INTERPOLATED because changed corrected temp implies changed speed 03:04:28 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.86 cm/s 03:04:28 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.14 cm/s 03:04:28 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:04:28 10 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (199/656) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:04:28 10 Mar 2017 UTC: INFO: QC.py(180): Changed (5/656) 231 276 286 654 655 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:04:28 10 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (199/656) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 03:04:28 10 Mar 2017 UTC: INFO: QC.py(180): Changed (5/656) 231 276 286 654 655 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 03:04:28 10 Mar 2017 UTC: INFO: QC.py(180): Changed (14/656) 1:6 261:265 654:656 to QC_BAD because changed salinity implies changed optode oxygen 03:04:28 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:04:28 10 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:04:28 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 03:04:28 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 353: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.13% reduction 03:04:28 10 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.353 03:04:28 10 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:04:28 10 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:04:28 10 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:04:28 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 03:04:28 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 03:07:22 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 03:07:23 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 03:07:23 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 03:07:57 10 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:07:57 10 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:07:57 10 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:07:57 10 Mar 2017 UTC /home/sg626/p6260353.log /home/sg626/p6260353.eng /home/sg626/p6260353.asc /home/sg626/p6260353.pro /home/sg626/p6260353.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 03:07:57 10 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:07:57 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:07:57 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:07:57 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:07:57 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:07:57 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:07:57 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:07:57 10 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:07:57 10 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:07:57 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:07:57 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:07:57 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:07:57 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:07:57 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:07:57 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:07:57 10 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:07:57 10 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:07:57 10 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:07:57 10 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:07:57 10 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:07:57 10 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:07:57 10 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:07:57 10 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:07:57 10 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 03:07:57 10 Mar 2017 UTC 06:49:12 10 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 23317 06:49:12 10 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:52:06 10 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 23518 06:52:06 10 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:52:06 10 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 06:52:06 10 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 06:52:06 10 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:52:06 10 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170309205206 ] 06:52:06 10 Mar 2017 UTC: INFO: Base.py(1333): PID:23526 06:52:06 10 Mar 2017 UTC: INFO: Base.py(1375): Started processing 06:52:06 10 Mar 2017 UTC 06:52:06 10 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 06:52:07 10 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 06:52:07 10 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:52:07 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:52:07 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:354 calls_made:1 call_cycle:0 06:52:07 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:52:07 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:354 calls_made:1 call_cycle:0 06:52:07 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:52:07 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:354 calls_made:1 call_cycle:0 06:52:07 10 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:354 calls_made:1 call_cycle:0 2244.2050 -15800.5150 03/10/17 06:47:00 UTC) to sdrifter@soest.hawaii.edu 06:52:07 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:354 calls_made:1 call_cycle:0 06:52:07 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:52:07 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:354 calls_made:1 call_cycle:0 06:52:07 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:52:07 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:354 calls_made:1 call_cycle:0 06:52:07 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:52:07 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:354 calls_made:1 call_cycle:0 06:52:07 10 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:52:07 10 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:52:13 10 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:52:14 10 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:52:14 10 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 06:52:14 10 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:52:14 10 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:52:14 10 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 06:52:16 10 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0354lz 06:52:16 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0354lz.x00 06:52:16 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0354lz.x01 06:52:16 10 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0354lz.r in process_file_group 06:52:16 10 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260354.log 06:52:16 10 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 06:52:16 10 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0354dz 06:52:16 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0354dz.x00 06:52:16 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0354dz.x01 06:52:16 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0354dz.x02 06:52:16 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0354dz.x03 06:52:16 10 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0354dz.r in process_file_group 06:52:16 10 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [354] 06:52:16 10 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [354] 06:52:16 10 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260354) for profiles 06:52:16 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 06:52:16 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/664) 663 664 to QC_BAD because CT out of water 06:52:16 10 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.126m) 06:52:16 10 Mar 2017 UTC: INFO: QC.py(365): Changed (13/664) 2 218 220 222 226 235 276 277 287 293 298 299 304 to QC_PROBABLY_BAD because raw temperature spikes 06:52:16 10 Mar 2017 UTC: INFO: QC.py(377): Changed (2/664) 663 664 to QC_BAD because raw salinity below bound 06:52:17 10 Mar 2017 UTC: INFO: QC.py(408): Changed (14/664) 205 218 220 222 226 231 235 276 277 287 293 298 ... to QC_PROBABLY_BAD because raw conductivity spikes 06:52:17 10 Mar 2017 UTC: INFO: QC.py(180): Changed (13/664) 2 218 220 222 226 235 276 277 287 293 298 299 304 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 06:52:17 10 Mar 2017 UTC: INFO: QC.py(180): Changed (2/664) 205 231 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 06:52:17 10 Mar 2017 UTC: INFO: QC.py(365): Changed (13/664) 2 218 220 222 226 235 276 277 287 293 298 299 304 to QC_INTERPOLATED because temperature spikes 06:52:17 10 Mar 2017 UTC: INFO: QC.py(377): Changed (2/664) 663 664 to QC_BAD because salinity below bound 06:52:17 10 Mar 2017 UTC: INFO: QC.py(408): Changed (14/664) 205 218 220 222 226 231 235 276 277 287 293 298 ... to QC_INTERPOLATED because conductivity spikes 06:52:17 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/664) 262:266 to QC_BAD because slow apogee CT flow 06:52:17 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/664) 1:7 to QC_BAD because prior to dive start 06:52:17 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/664) 662 to QC_BAD because end of climb 06:52:17 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/664) 1:7 262:266 662:664 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 06:52:17 10 Mar 2017 UTC: INFO: QC.py(180): Changed (15/664) 1:7 262:266 662:664 to QC_BAD because changed corrected salin implies changed speed 06:52:17 10 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 06:52:17 10 Mar 2017 UTC: INFO: QC.py(180): Changed (12/664) 218 220 222 226 235 276 277 287 293 298 299 304 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 06:52:17 10 Mar 2017 UTC: INFO: QC.py(180): Changed (2/664) 205 231 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 06:52:17 10 Mar 2017 UTC: INFO: QC.py(180): Changed (12/664) 218 220 222 226 235 276 277 287 293 298 299 304 to QC_INTERPOLATED because changed corrected temp implies changed speed 06:52:17 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.31 cm/s 06:52:17 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.99 cm/s 06:52:17 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 06:52:17 10 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (199/664) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 06:52:17 10 Mar 2017 UTC: INFO: QC.py(180): Changed (3/664) 2 226 276 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 06:52:17 10 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (199/664) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 06:52:17 10 Mar 2017 UTC: INFO: QC.py(180): Changed (3/664) 2 226 276 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 06:52:17 10 Mar 2017 UTC: INFO: QC.py(180): Changed (15/664) 1:7 262:266 662:664 to QC_BAD because changed salinity implies changed optode oxygen 06:52:17 10 Mar 2017 UTC: INFO: QC.py(180): Changed (1/664) 231 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 06:52:17 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 06:52:17 10 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 06:52:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 06:52:18 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 354: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.26% reduction 06:52:18 10 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.354 06:52:18 10 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:52:18 10 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:52:18 10 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:52:18 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 06:52:18 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 06:55:12 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 06:55:13 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 06:55:13 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 06:55:47 10 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:55:47 10 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:55:47 10 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 06:55:47 10 Mar 2017 UTC /home/sg626/p6260354.log /home/sg626/p6260354.eng /home/sg626/p6260354.asc /home/sg626/p6260354.pro /home/sg626/p6260354.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 06:55:47 10 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:55:47 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:55:47 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:55:47 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:55:47 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:55:47 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:55:47 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:55:47 10 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:55:47 10 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:55:47 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:55:47 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:55:47 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:55:47 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:55:47 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:55:47 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:55:47 10 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:55:47 10 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 06:55:47 10 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 06:55:47 10 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 06:55:47 10 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 06:55:47 10 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:55:47 10 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:55:47 10 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:55:47 10 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 06:55:47 10 Mar 2017 UTC 10:28:06 10 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 29898 10:28:06 10 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:31:08 10 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 30112 10:31:08 10 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:31:08 10 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:31:08 10 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:31:08 10 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:31:08 10 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170310003107 ] 10:31:08 10 Mar 2017 UTC: INFO: Base.py(1333): PID:30119 10:31:08 10 Mar 2017 UTC: INFO: Base.py(1375): Started processing 10:31:08 10 Mar 2017 UTC 10:31:08 10 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:31:09 10 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:31:09 10 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:31:09 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:31:09 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:355 calls_made:1 call_cycle:0 10:31:09 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:31:09 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:355 calls_made:1 call_cycle:0 10:31:09 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:31:09 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:355 calls_made:1 call_cycle:0 10:31:09 10 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:355 calls_made:1 call_cycle:0 2244.5830 -15759.7340 03/10/17 10:25:50 UTC) to sdrifter@soest.hawaii.edu 10:31:09 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:355 calls_made:1 call_cycle:0 10:31:09 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:31:09 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:355 calls_made:1 call_cycle:0 10:31:09 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:31:09 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:355 calls_made:1 call_cycle:0 10:31:09 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:31:09 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:355 calls_made:1 call_cycle:0 10:31:09 10 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:31:09 10 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:31:14 10 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:31:15 10 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:31:15 10 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:31:15 10 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:31:15 10 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:31:15 10 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:31:17 10 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0355lz 10:31:17 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0355lz.x00 10:31:17 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0355lz.x01 10:31:17 10 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0355lz.r in process_file_group 10:31:17 10 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260355.log 10:31:17 10 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:31:17 10 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0355dz 10:31:17 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0355dz.x00 10:31:17 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0355dz.x01 10:31:17 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0355dz.x02 10:31:17 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0355dz.x03 10:31:17 10 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0355dz.r in process_file_group 10:31:18 10 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [355] 10:31:18 10 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [355] 10:31:18 10 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260355) for profiles 10:31:18 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 10:31:18 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/631) 631 to QC_BAD because CT out of water 10:31:18 10 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.031m) 10:31:18 10 Mar 2017 UTC: INFO: QC.py(365): Changed (13/631) 3 193 198 207 211 212 216 272:274 276 277 280 to QC_PROBABLY_BAD because raw temperature spikes 10:31:18 10 Mar 2017 UTC: INFO: QC.py(377): Changed (1/631) 631 to QC_BAD because raw salinity below bound 10:31:18 10 Mar 2017 UTC: INFO: QC.py(408): Changed (7/631) 193 198 214 216 274 277 288 to QC_PROBABLY_BAD because raw conductivity spikes 10:31:18 10 Mar 2017 UTC: INFO: QC.py(180): Changed (13/631) 3 193 198 207 211 212 216 272:274 276 277 280 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 10:31:18 10 Mar 2017 UTC: INFO: QC.py(180): Changed (2/631) 214 288 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 10:31:18 10 Mar 2017 UTC: INFO: QC.py(365): Changed (13/631) 3 193 198 207 211 212 216 272:274 276 277 280 to QC_INTERPOLATED because temperature spikes 10:31:18 10 Mar 2017 UTC: INFO: QC.py(377): Changed (1/631) 631 to QC_BAD because salinity below bound 10:31:18 10 Mar 2017 UTC: INFO: QC.py(408): Changed (7/631) 193 198 214 216 274 277 288 to QC_INTERPOLATED because conductivity spikes 10:31:18 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/631) 247:251 to QC_BAD because slow apogee CT flow 10:31:18 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/631) 1:6 to QC_BAD because prior to dive start 10:31:18 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/631) 630 to QC_BAD because end of climb 10:31:18 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/631) 1:6 247:251 630 631 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:31:18 10 Mar 2017 UTC: INFO: QC.py(180): Changed (13/631) 1:6 247:251 630 631 to QC_BAD because changed corrected salin implies changed speed 10:31:19 10 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 10:31:19 10 Mar 2017 UTC: INFO: QC.py(180): Changed (12/631) 193 198 207 211 212 216 272:274 276 277 280 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 10:31:19 10 Mar 2017 UTC: INFO: QC.py(180): Changed (2/631) 214 288 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 10:31:19 10 Mar 2017 UTC: INFO: QC.py(180): Changed (12/631) 193 198 207 211 212 216 272:274 276 277 280 to QC_INTERPOLATED because changed corrected temp implies changed speed 10:31:19 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.72 cm/s 10:31:19 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.06 cm/s 10:31:19 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:31:19 10 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (191/631) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:31:19 10 Mar 2017 UTC: INFO: QC.py(180): Changed (4/631) 3 211 216 276 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 10:31:19 10 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (191/631) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 10:31:19 10 Mar 2017 UTC: INFO: QC.py(180): Changed (4/631) 3 211 216 276 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 10:31:19 10 Mar 2017 UTC: INFO: QC.py(180): Changed (13/631) 1:6 247:251 630 631 to QC_BAD because changed salinity implies changed optode oxygen 10:31:19 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:31:19 10 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:31:19 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 10:31:19 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 355: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.06% reduction 10:31:19 10 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.355 10:31:19 10 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:31:19 10 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:31:19 10 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:31:19 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 10:31:19 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 10:34:12 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 10:34:13 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 10:34:13 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 10:34:48 10 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:34:48 10 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:34:48 10 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 10:34:48 10 Mar 2017 UTC /home/sg626/p6260355.log /home/sg626/p6260355.eng /home/sg626/p6260355.asc /home/sg626/p6260355.pro /home/sg626/p6260355.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 10:34:48 10 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:34:48 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:34:48 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:34:48 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:34:48 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:34:48 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:34:48 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:34:48 10 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:34:48 10 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:34:48 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:34:48 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:34:48 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:34:48 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:34:48 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:34:48 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:34:48 10 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:34:48 10 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:34:48 10 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:34:48 10 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:34:48 10 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:34:48 10 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:34:48 10 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:34:48 10 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:34:48 10 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 10:34:48 10 Mar 2017 UTC 14:08:13 10 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 3587 14:08:13 10 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:11:06 10 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 3800 14:11:06 10 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:11:06 10 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 14:11:06 10 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 14:11:06 10 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:11:06 10 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170310041105 ] 14:11:06 10 Mar 2017 UTC: INFO: Base.py(1333): PID:3808 14:11:06 10 Mar 2017 UTC: INFO: Base.py(1375): Started processing 14:11:06 10 Mar 2017 UTC 14:11:06 10 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 14:11:07 10 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 14:11:07 10 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:11:07 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:11:07 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:356 calls_made:1 call_cycle:0 14:11:07 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:11:07 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:356 calls_made:1 call_cycle:0 14:11:07 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:11:07 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:356 calls_made:1 call_cycle:0 14:11:07 10 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:356 calls_made:1 call_cycle:0 2244.1870 -15801.0680 03/10/17 14:06:00 UTC) to sdrifter@soest.hawaii.edu 14:11:07 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:356 calls_made:1 call_cycle:0 14:11:07 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:11:07 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:356 calls_made:1 call_cycle:0 14:11:07 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:11:07 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:356 calls_made:1 call_cycle:0 14:11:07 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:11:07 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:356 calls_made:1 call_cycle:0 14:11:07 10 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:11:07 10 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:11:13 10 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:11:14 10 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:11:14 10 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 14:11:14 10 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:11:14 10 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:11:14 10 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 14:11:16 10 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0356lz 14:11:16 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0356lz.x00 14:11:16 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0356lz.x01 14:11:16 10 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0356lz.r in process_file_group 14:11:16 10 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260356.log 14:11:16 10 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 14:11:16 10 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0356dz 14:11:16 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0356dz.x00 14:11:16 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0356dz.x01 14:11:16 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0356dz.x02 14:11:16 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0356dz.x03 14:11:16 10 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0356dz.r in process_file_group 14:11:16 10 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [356] 14:11:16 10 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [356] 14:11:16 10 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260356) for profiles 14:11:16 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 14:11:16 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/663) 663 to QC_BAD because CT out of water 14:11:16 10 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.070m) 14:11:16 10 Mar 2017 UTC: INFO: QC.py(365): Changed (9/663) 2 202 203 212 216 263 264 266 282 to QC_PROBABLY_BAD because raw temperature spikes 14:11:16 10 Mar 2017 UTC: INFO: QC.py(408): Changed (4/663) 202 203 212 266 to QC_PROBABLY_BAD because raw conductivity spikes 14:11:16 10 Mar 2017 UTC: INFO: QC.py(180): Changed (9/663) 2 202 203 212 216 263 264 266 282 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:11:16 10 Mar 2017 UTC: INFO: QC.py(180): Changed (1/663) 663 to QC_BAD because changed raw cond implies changed raw salinity 14:11:16 10 Mar 2017 UTC: INFO: QC.py(365): Changed (9/663) 2 202 203 212 216 263 264 266 282 to QC_INTERPOLATED because temperature spikes 14:11:17 10 Mar 2017 UTC: INFO: QC.py(408): Changed (4/663) 202 203 212 266 to QC_INTERPOLATED because conductivity spikes 14:11:17 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/663) 242:246 to QC_BAD because slow apogee CT flow 14:11:17 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/663) 1:7 to QC_BAD because prior to dive start 14:11:17 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/663) 1:7 242:246 663 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:11:17 10 Mar 2017 UTC: INFO: QC.py(180): Changed (13/663) 1:7 242:246 663 to QC_BAD because changed corrected salin implies changed speed 14:11:17 10 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:11:17 10 Mar 2017 UTC: INFO: QC.py(180): Changed (8/663) 202 203 212 216 263 264 266 282 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 14:11:17 10 Mar 2017 UTC: INFO: QC.py(180): Changed (8/663) 202 203 212 216 263 264 266 282 to QC_INTERPOLATED because changed corrected temp implies changed speed 14:11:17 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.95 cm/s 14:11:17 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.16 cm/s 14:11:17 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:11:17 10 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (189/663) 135 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:11:17 10 Mar 2017 UTC: INFO: QC.py(180): Changed (3/663) 2 216 266 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 14:11:17 10 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (189/663) 135 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 14:11:17 10 Mar 2017 UTC: INFO: QC.py(180): Changed (3/663) 2 216 266 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 14:11:17 10 Mar 2017 UTC: INFO: QC.py(180): Changed (13/663) 1:7 242:246 663 to QC_BAD because changed salinity implies changed optode oxygen 14:11:17 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:11:17 10 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:11:17 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 14:11:18 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 356: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.96% reduction 14:11:18 10 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.356 14:11:18 10 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:11:18 10 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:11:18 10 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:11:18 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 14:11:18 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 14:14:13 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 14:14:14 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 14:14:14 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 14:14:48 10 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:14:48 10 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:14:48 10 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:14:48 10 Mar 2017 UTC /home/sg626/p6260356.log /home/sg626/p6260356.eng /home/sg626/p6260356.asc /home/sg626/p6260356.pro /home/sg626/p6260356.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 14:14:48 10 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:14:48 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:14:48 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:14:48 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:14:48 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:14:48 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:14:48 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:14:48 10 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:14:48 10 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:14:48 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:14:48 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:14:48 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:14:48 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:14:48 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:14:48 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:14:48 10 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:14:48 10 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:14:48 10 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:14:48 10 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:14:48 10 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:14:48 10 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:14:48 10 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:14:48 10 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:14:48 10 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 14:14:48 10 Mar 2017 UTC 17:56:34 10 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9313 17:56:34 10 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:59:43 10 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9441 17:59:43 10 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:59:43 10 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:59:43 10 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:59:43 10 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:59:43 10 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170310075943 ] 17:59:43 10 Mar 2017 UTC: INFO: Base.py(1333): PID:9449 17:59:43 10 Mar 2017 UTC: INFO: Base.py(1375): Started processing 17:59:43 10 Mar 2017 UTC 17:59:43 10 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:59:44 10 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:59:44 10 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:59:44 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:59:44 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:357 calls_made:1 call_cycle:0 17:59:44 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:59:44 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:357 calls_made:1 call_cycle:0 17:59:44 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:59:44 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:357 calls_made:1 call_cycle:0 17:59:44 10 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:357 calls_made:1 call_cycle:0 2244.5700 -15759.4920 03/10/17 17:54:21 UTC) to sdrifter@soest.hawaii.edu 17:59:45 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:357 calls_made:1 call_cycle:0 17:59:45 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:59:45 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:357 calls_made:1 call_cycle:0 17:59:45 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:59:45 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:357 calls_made:1 call_cycle:0 17:59:45 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:59:45 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:357 calls_made:1 call_cycle:0 17:59:45 10 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:59:45 10 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:59:50 10 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:59:51 10 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:59:51 10 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:59:51 10 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:59:51 10 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:59:51 10 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:59:53 10 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0357lz 17:59:53 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0357lz.x00 17:59:53 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0357lz.x01 17:59:53 10 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0357lz.r in process_file_group 17:59:53 10 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260357.log 17:59:53 10 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:59:53 10 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0357dz 17:59:53 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0357dz.x00 17:59:53 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0357dz.x01 17:59:53 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0357dz.x02 17:59:53 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0357dz.x03 17:59:53 10 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0357dz.r in process_file_group 17:59:53 10 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [357] 17:59:53 10 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [357] 17:59:54 10 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260357) for profiles 17:59:54 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:59:54 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/659) 658 659 to QC_BAD because CT out of water 17:59:54 10 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.117m) 17:59:54 10 Mar 2017 UTC: INFO: QC.py(365): Changed (16/659) 2 204 205 218 222 224 225 227 231 233 256 284 286 ... to QC_PROBABLY_BAD because raw temperature spikes 17:59:54 10 Mar 2017 UTC: INFO: QC.py(377): Changed (1/659) 659 to QC_BAD because raw salinity below bound 17:59:54 10 Mar 2017 UTC: INFO: QC.py(408): Changed (14/659) 205 218 222 224 225 227 231 233 256 284 286 298 ... to QC_PROBABLY_BAD because raw conductivity spikes 17:59:54 10 Mar 2017 UTC: INFO: QC.py(180): Changed (16/659) 2 204 205 218 222 224 225 227 231 233 256 284 286 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:59:54 10 Mar 2017 UTC: INFO: QC.py(180): Changed (1/659) 658 to QC_BAD because changed raw cond implies changed raw salinity 17:59:54 10 Mar 2017 UTC: INFO: QC.py(365): Changed (16/659) 2 204 205 218 222 224 225 227 231 233 256 284 286 ... to QC_INTERPOLATED because temperature spikes 17:59:54 10 Mar 2017 UTC: INFO: QC.py(377): Changed (1/659) 659 to QC_BAD because salinity below bound 17:59:54 10 Mar 2017 UTC: INFO: QC.py(408): Changed (14/659) 205 218 222 224 225 227 231 233 256 284 286 298 ... to QC_INTERPOLATED because conductivity spikes 17:59:54 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/659) 261:265 to QC_BAD because slow apogee CT flow 17:59:54 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/659) 1:6 to QC_BAD because prior to dive start 17:59:54 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/659) 1:6 261:265 658 659 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:59:54 10 Mar 2017 UTC: INFO: QC.py(180): Changed (13/659) 1:6 261:265 658 659 to QC_BAD because changed corrected salin implies changed speed 17:59:54 10 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:59:54 10 Mar 2017 UTC: INFO: QC.py(180): Changed (15/659) 204 205 218 222 224 225 227 231 233 256 284 286 ... to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 17:59:54 10 Mar 2017 UTC: INFO: QC.py(180): Changed (15/659) 204 205 218 222 224 225 227 231 233 256 284 286 ... to QC_INTERPOLATED because changed corrected temp implies changed speed 17:59:54 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.25 cm/s 17:59:54 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.00 cm/s 17:59:54 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:59:54 10 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (202/659) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:59:54 10 Mar 2017 UTC: INFO: QC.py(180): Changed (4/659) 2 231 256 286 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:59:55 10 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (202/659) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:59:55 10 Mar 2017 UTC: INFO: QC.py(180): Changed (4/659) 2 231 256 286 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:59:55 10 Mar 2017 UTC: INFO: QC.py(180): Changed (13/659) 1:6 261:265 658 659 to QC_BAD because changed salinity implies changed optode oxygen 17:59:55 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:59:55 10 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:59:55 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:59:55 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 357: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.97% reduction 17:59:55 10 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.357 17:59:55 10 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:59:55 10 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:59:55 10 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:59:55 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:59:55 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 18:02:49 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 18:02:50 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 18:02:50 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 18:03:25 10 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:03:25 10 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:03:25 10 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:03:25 10 Mar 2017 UTC /home/sg626/p6260357.log /home/sg626/p6260357.eng /home/sg626/p6260357.asc /home/sg626/p6260357.pro /home/sg626/p6260357.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 18:03:25 10 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:03:25 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:03:25 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:03:25 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:03:25 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:03:25 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:03:25 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:03:25 10 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:03:25 10 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:03:25 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:03:25 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:03:25 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:03:25 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:03:25 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:03:25 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:03:25 10 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:03:25 10 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 18:03:25 10 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 18:03:25 10 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 18:03:25 10 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 18:03:25 10 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:03:25 10 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:03:25 10 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:03:25 10 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 18:03:25 10 Mar 2017 UTC 21:43:37 10 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 15281 21:43:37 10 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:46:49 10 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 15411 21:46:49 10 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:46:49 10 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:46:49 10 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:46:49 10 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:46:49 10 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170310114648 ] 21:46:49 10 Mar 2017 UTC: INFO: Base.py(1333): PID:15418 21:46:49 10 Mar 2017 UTC: INFO: Base.py(1375): Started processing 21:46:49 10 Mar 2017 UTC 21:46:49 10 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:46:50 10 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:46:50 10 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:46:50 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:46:50 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:358 calls_made:1 call_cycle:0 21:46:50 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:46:50 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:358 calls_made:1 call_cycle:0 21:46:50 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:46:50 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:358 calls_made:1 call_cycle:0 21:46:50 10 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:358 calls_made:1 call_cycle:0 2243.6480 -15800.9070 03/10/17 21:41:24 UTC) to sdrifter@soest.hawaii.edu 21:46:50 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:358 calls_made:1 call_cycle:0 21:46:50 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:46:50 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:358 calls_made:1 call_cycle:0 21:46:50 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:46:50 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:358 calls_made:1 call_cycle:0 21:46:50 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:46:50 10 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:358 calls_made:1 call_cycle:0 21:46:50 10 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:46:50 10 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:46:56 10 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:46:57 10 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:46:57 10 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:46:57 10 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:46:57 10 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:46:57 10 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:46:59 10 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0358lz 21:46:59 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0358lz.x00 21:46:59 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0358lz.x01 21:46:59 10 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0358lz.r in process_file_group 21:46:59 10 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260358.log 21:46:59 10 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:46:59 10 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0358dz 21:46:59 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0358dz.x00 21:46:59 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0358dz.x01 21:46:59 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0358dz.x02 21:46:59 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0358dz.x03 21:46:59 10 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0358dz.x04 21:46:59 10 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0358dz.r in process_file_group 21:46:59 10 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [358] 21:46:59 10 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [358] 21:46:59 10 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260358) for profiles 21:46:59 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:46:59 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/691) 691 to QC_BAD because CT out of water 21:46:59 10 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.044m) 21:46:59 10 Mar 2017 UTC: INFO: QC.py(365): Changed (6/691) 3 196 207 245 246 690 to QC_PROBABLY_BAD because raw temperature spikes 21:46:59 10 Mar 2017 UTC: INFO: QC.py(377): Changed (2/691) 690 691 to QC_BAD because raw salinity below bound 21:46:59 10 Mar 2017 UTC: INFO: QC.py(408): Changed (4/691) 196 207 245 246 to QC_PROBABLY_BAD because raw conductivity spikes 21:46:59 10 Mar 2017 UTC: INFO: QC.py(180): Changed (5/691) 3 196 207 245 246 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:46:59 10 Mar 2017 UTC: INFO: QC.py(365): Changed (6/691) 3 196 207 245 246 690 to QC_INTERPOLATED because temperature spikes 21:46:59 10 Mar 2017 UTC: INFO: QC.py(377): Changed (2/691) 690 691 to QC_BAD because salinity below bound 21:46:59 10 Mar 2017 UTC: INFO: QC.py(388): Changed (1/691) 690 to QC_BAD because bad salinity indicates conductivity issues 21:46:59 10 Mar 2017 UTC: INFO: QC.py(408): Changed (4/691) 196 207 245 246 to QC_INTERPOLATED because conductivity spikes 21:46:59 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/691) 248:252 to QC_BAD because slow apogee CT flow 21:46:59 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/691) 1:6 to QC_BAD because prior to dive start 21:47:00 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/691) 1:6 248:252 690 691 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:47:00 10 Mar 2017 UTC: INFO: QC.py(180): Changed (13/691) 1:6 248:252 690 691 to QC_BAD because changed corrected salin implies changed speed 21:47:00 10 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:47:00 10 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 358 interp_salinity data_points in_between 384 394 % suspect thermal-inertia points 391 392 21:47:00 10 Mar 2017 UTC: INFO: QC.py(180): Changed (4/691) 196 207 245 246 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 21:47:00 10 Mar 2017 UTC: INFO: QC.py(180): Changed (4/691) 196 207 245 246 to QC_INTERPOLATED because changed corrected temp implies changed speed 21:47:00 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.25 cm/s 21:47:00 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.27 cm/s 21:47:00 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:47:00 10 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (192/691) 133:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:47:00 10 Mar 2017 UTC: INFO: QC.py(180): Changed (4/691) 3 196 246 690 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:47:00 10 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (192/691) 133:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:47:00 10 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/691) 691 to QC_BAD because bad aa4330 oyxgen 21:47:00 10 Mar 2017 UTC: INFO: QC.py(180): Changed (4/691) 3 196 246 690 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:47:00 10 Mar 2017 UTC: INFO: QC.py(180): Changed (12/691) 1:6 248:252 690 to QC_BAD because changed salinity implies changed optode oxygen 21:47:00 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:47:00 10 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:47:00 10 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:47:01 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 358: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.88% reduction 21:47:01 10 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.358 21:47:01 10 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:47:01 10 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:47:01 10 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:47:01 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:47:01 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 21:49:56 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 21:49:57 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 21:49:57 10 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 21:50:31 10 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:50:31 10 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:50:31 10 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:50:31 10 Mar 2017 UTC /home/sg626/p6260358.log /home/sg626/p6260358.eng /home/sg626/p6260358.asc /home/sg626/p6260358.pro /home/sg626/p6260358.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 21:50:31 10 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:50:31 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:50:31 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:50:31 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:50:31 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:50:31 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:50:31 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:50:31 10 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:50:31 10 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:50:31 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:50:31 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:50:31 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:50:31 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:50:31 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:50:31 10 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:50:31 10 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:50:31 10 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:50:31 10 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:50:31 10 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:50:31 10 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:50:31 10 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:50:31 10 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:50:31 10 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:50:31 10 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 21:50:31 10 Mar 2017 UTC 01:18:09 11 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 20976 01:18:09 11 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:18:31 11 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 21059 01:18:31 11 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:18:31 11 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:18:31 11 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:18:31 11 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:18:31 11 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170310151830 ] 01:18:31 11 Mar 2017 UTC: INFO: Base.py(1333): PID:21066 01:18:31 11 Mar 2017 UTC: INFO: Base.py(1375): Started processing 01:18:31 11 Mar 2017 UTC 01:18:31 11 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:18:32 11 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:18:32 11 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:18:32 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:18:32 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:359 calls_made:1 call_cycle:0 01:18:32 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:18:32 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:359 calls_made:1 call_cycle:0 01:18:32 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:18:32 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:359 calls_made:1 call_cycle:0 01:18:32 11 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:359 calls_made:1 call_cycle:0 2243.8460 -15759.9110 03/11/17 01:15:53 UTC) to sdrifter@soest.hawaii.edu 01:18:32 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:359 calls_made:1 call_cycle:0 01:18:32 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:18:32 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:359 calls_made:1 call_cycle:0 01:18:32 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:18:32 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:359 calls_made:1 call_cycle:0 01:18:32 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:18:32 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:359 calls_made:1 call_cycle:0 01:18:32 11 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:18:32 11 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:18:38 11 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:18:39 11 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:18:39 11 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:18:39 11 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:18:39 11 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:18:39 11 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:18:41 11 Mar 2017 UTC: WARNING: Base.py(1624): No dives to process 01:18:41 11 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [] 01:18:41 11 Mar 2017 UTC: INFO: Base.py(1780): No dives found to profile 01:18:41 11 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.359 01:18:41 11 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:18:41 11 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:18:41 11 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:18:41 11 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:18:41 11 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:18:41 11 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:18:41 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:18:41 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:18:41 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:18:41 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:18:41 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:18:41 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:18:41 11 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:18:41 11 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:18:41 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:18:41 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:18:41 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:18:41 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:18:41 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:18:41 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:18:41 11 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:18:41 11 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:18:41 11 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:18:41 11 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:18:41 11 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:18:41 11 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:18:41 11 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:18:41 11 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:18:41 11 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 01:18:41 11 Mar 2017 UTC 01:20:59 11 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 21324 01:20:59 11 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:23:49 11 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 21450 01:23:49 11 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:23:49 11 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:23:49 11 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:23:49 11 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:23:49 11 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170310152348 ] 01:23:49 11 Mar 2017 UTC: INFO: Base.py(1333): PID:21458 01:23:49 11 Mar 2017 UTC: INFO: Base.py(1375): Started processing 01:23:49 11 Mar 2017 UTC 01:23:49 11 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:23:50 11 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:23:50 11 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:23:50 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:23:50 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:359 calls_made:2 call_cycle:0 01:23:50 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:23:50 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:359 calls_made:2 call_cycle:0 01:23:50 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:23:50 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:359 calls_made:2 call_cycle:0 01:23:50 11 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:359 calls_made:2 call_cycle:0 2243.8460 -15759.9110 03/11/17 01:15:53 UTC) to sdrifter@soest.hawaii.edu 01:23:50 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:359 calls_made:2 call_cycle:0 01:23:50 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:23:50 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:359 calls_made:2 call_cycle:0 01:23:50 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:23:50 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:359 calls_made:2 call_cycle:0 01:23:50 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:23:50 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:359 calls_made:2 call_cycle:0 01:23:50 11 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:23:50 11 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:23:56 11 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:23:57 11 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:23:57 11 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:23:57 11 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:23:57 11 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:23:57 11 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:23:59 11 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0359lz 01:23:59 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0359lz.x00 01:23:59 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0359lz.x01 01:23:59 11 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0359lz.r in process_file_group 01:23:59 11 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260359.log 01:23:59 11 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:23:59 11 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0359dz 01:23:59 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0359dz.x00 01:23:59 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0359dz.x01 01:23:59 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0359dz.x02 01:23:59 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0359dz.x03 01:23:59 11 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0359dz.r in process_file_group 01:23:59 11 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [359] 01:23:59 11 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [359] 01:23:59 11 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260359) for profiles 01:23:59 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:23:59 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/612) 611 612 to QC_BAD because CT out of water 01:23:59 11 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.143m) 01:23:59 11 Mar 2017 UTC: INFO: QC.py(365): Changed (6/612) 3 193 208 242 264 277 to QC_PROBABLY_BAD because raw temperature spikes 01:23:59 11 Mar 2017 UTC: INFO: QC.py(408): Changed (6/612) 193 208 214 242 264 272 to QC_PROBABLY_BAD because raw conductivity spikes 01:23:59 11 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <84 pt uncorrectable 326.4m SUSPECT weak conductivity anomaly n:-0.27 p:0.27> 01:23:59 11 Mar 2017 UTC: INFO: QC.py(180): Changed (6/612) 3 193 208 242 264 277 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:23:59 11 Mar 2017 UTC: INFO: QC.py(180): Changed (2/612) 214 272 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 01:23:59 11 Mar 2017 UTC: INFO: QC.py(180): Changed (2/612) 611 612 to QC_BAD because changed raw cond implies changed raw salinity 01:23:59 11 Mar 2017 UTC: INFO: QC.py(365): Changed (6/612) 3 193 208 242 264 277 to QC_INTERPOLATED because temperature spikes 01:23:59 11 Mar 2017 UTC: INFO: QC.py(408): Changed (6/612) 193 208 214 242 264 272 to QC_INTERPOLATED because conductivity spikes 01:23:59 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/612) 240:244 to QC_BAD because slow apogee CT flow 01:23:59 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/612) 1:6 to QC_BAD because prior to dive start 01:23:59 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/612) 1:6 240:244 611 612 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:23:59 11 Mar 2017 UTC: INFO: QC.py(180): Changed (13/612) 1:6 240:244 611 612 to QC_BAD because changed corrected salin implies changed speed 01:24:00 11 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:24:00 11 Mar 2017 UTC: INFO: QC.py(180): Changed (4/612) 193 208 264 277 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 01:24:00 11 Mar 2017 UTC: INFO: QC.py(180): Changed (2/612) 214 272 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 01:24:00 11 Mar 2017 UTC: INFO: QC.py(180): Changed (4/612) 193 208 264 277 to QC_INTERPOLATED because changed corrected temp implies changed speed 01:24:00 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.38 cm/s 01:24:00 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.25 cm/s 01:24:00 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:24:00 11 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (184/612) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:24:00 11 Mar 2017 UTC: INFO: QC.py(180): Changed (1/612) 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 01:24:00 11 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (184/612) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 01:24:00 11 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/612) 610 611 to QC_BAD because bad aa4330 oyxgen 01:24:00 11 Mar 2017 UTC: INFO: QC.py(180): Changed (1/612) 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 01:24:00 11 Mar 2017 UTC: INFO: QC.py(180): Changed (12/612) 1:6 240:244 612 to QC_BAD because changed salinity implies changed optode oxygen 01:24:00 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:24:00 11 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:24:00 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:24:00 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 359: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.12% reduction 01:24:01 11 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.359 01:24:01 11 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:24:01 11 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:24:01 11 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:24:01 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:24:01 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 01:26:59 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 01:27:00 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 01:27:00 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 01:27:35 11 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:27:35 11 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:27:35 11 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:27:35 11 Mar 2017 UTC /home/sg626/p6260359.log /home/sg626/p6260359.eng /home/sg626/p6260359.asc /home/sg626/p6260359.pro /home/sg626/p6260359.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 01:27:35 11 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:27:35 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:27:35 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:27:35 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:27:35 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:27:35 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:27:35 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:27:35 11 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:27:35 11 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:27:35 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:27:35 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:27:35 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:27:35 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:27:35 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:27:35 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:27:35 11 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:27:35 11 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:27:35 11 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:27:35 11 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:27:35 11 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:27:35 11 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:27:35 11 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:27:35 11 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:27:35 11 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 01:27:35 11 Mar 2017 UTC 05:01:52 11 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 27728 05:01:52 11 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:04:45 11 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 27850 05:04:45 11 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:04:45 11 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:04:45 11 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:04:45 11 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:04:45 11 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170310190444 ] 05:04:45 11 Mar 2017 UTC: INFO: Base.py(1333): PID:27857 05:04:45 11 Mar 2017 UTC: INFO: Base.py(1375): Started processing 05:04:45 11 Mar 2017 UTC 05:04:45 11 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:04:46 11 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:04:46 11 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:04:46 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:04:46 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:360 calls_made:1 call_cycle:0 05:04:46 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:04:46 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:360 calls_made:1 call_cycle:0 05:04:46 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:04:46 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:360 calls_made:1 call_cycle:0 05:04:46 11 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:360 calls_made:1 call_cycle:0 2244.9670 -15800.2180 03/11/17 04:59:24 UTC) to sdrifter@soest.hawaii.edu 05:04:46 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:360 calls_made:1 call_cycle:0 05:04:46 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:04:46 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:360 calls_made:1 call_cycle:0 05:04:46 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:04:46 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:360 calls_made:1 call_cycle:0 05:04:46 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:04:46 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:360 calls_made:1 call_cycle:0 05:04:46 11 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:04:46 11 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:04:51 11 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:04:52 11 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:04:52 11 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:04:52 11 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:04:52 11 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:04:52 11 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:04:54 11 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0360lz 05:04:54 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0360lz.x00 05:04:54 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0360lz.x01 05:04:54 11 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0360lz.r in process_file_group 05:04:54 11 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260360.log 05:04:54 11 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:04:54 11 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0360dz 05:04:54 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0360dz.x00 05:04:54 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0360dz.x01 05:04:54 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0360dz.x02 05:04:54 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0360dz.x03 05:04:54 11 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0360dz.r in process_file_group 05:04:55 11 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [360] 05:04:55 11 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [360] 05:04:55 11 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260360) for profiles 05:04:55 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:04:55 11 Mar 2017 UTC: INFO: QC.py(365): Changed (12/640) 204 205 207 209 226 227 230 255 264 265 272 278 to QC_PROBABLY_BAD because raw temperature spikes 05:04:55 11 Mar 2017 UTC: INFO: QC.py(408): Changed (11/640) 199 204 205 207 209 218 226 227 255 272 278 to QC_PROBABLY_BAD because raw conductivity spikes 05:04:55 11 Mar 2017 UTC: INFO: QC.py(180): Changed (12/640) 204 205 207 209 226 227 230 255 264 265 272 278 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:04:55 11 Mar 2017 UTC: INFO: QC.py(180): Changed (2/640) 199 218 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 05:04:55 11 Mar 2017 UTC: INFO: QC.py(365): Changed (12/640) 204 205 207 209 226 227 230 255 264 265 272 278 to QC_INTERPOLATED because temperature spikes 05:04:55 11 Mar 2017 UTC: INFO: QC.py(408): Changed (11/640) 199 204 205 207 209 218 226 227 255 272 278 to QC_INTERPOLATED because conductivity spikes 05:04:55 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/640) 246:250 to QC_BAD because slow apogee CT flow 05:04:55 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/640) 1:6 to QC_BAD because prior to dive start 05:04:55 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/640) 1:6 246:250 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:04:55 11 Mar 2017 UTC: INFO: QC.py(180): Changed (11/640) 1:6 246:250 to QC_BAD because changed corrected salin implies changed speed 05:04:56 11 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:04:56 11 Mar 2017 UTC: INFO: QC.py(180): Changed (12/640) 204 205 207 209 226 227 230 255 264 265 272 278 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 05:04:56 11 Mar 2017 UTC: INFO: QC.py(180): Changed (2/640) 199 218 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 05:04:56 11 Mar 2017 UTC: INFO: QC.py(180): Changed (12/640) 204 205 207 209 226 227 230 255 264 265 272 278 to QC_INTERPOLATED because changed corrected temp implies changed speed 05:04:56 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.86 cm/s 05:04:56 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.27 cm/s 05:04:56 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:04:56 11 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (192/640) 133:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:04:56 11 Mar 2017 UTC: INFO: QC.py(180): Changed (1/640) 226 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:04:56 11 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (192/640) 133:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:04:56 11 Mar 2017 UTC: INFO: QC.py(180): Changed (1/640) 226 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:04:56 11 Mar 2017 UTC: INFO: QC.py(180): Changed (11/640) 1:6 246:250 to QC_BAD because changed salinity implies changed optode oxygen 05:04:56 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:04:56 11 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:04:56 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 05:04:56 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 360: Data set size for profile, binned and kkyy files reduced by 11 points, a 1.72% reduction 05:04:56 11 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.360 05:04:56 11 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:04:56 11 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:04:56 11 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:04:57 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 05:04:57 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 05:07:54 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 05:07:55 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 05:07:55 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 05:08:30 11 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:08:30 11 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:08:30 11 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:08:30 11 Mar 2017 UTC /home/sg626/p6260360.log /home/sg626/p6260360.eng /home/sg626/p6260360.asc /home/sg626/p6260360.pro /home/sg626/p6260360.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 05:08:30 11 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:08:30 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:08:30 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:08:30 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:08:30 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:08:30 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:08:30 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:08:30 11 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:08:30 11 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:08:30 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:08:30 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:08:30 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:08:30 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:08:30 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:08:30 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:08:30 11 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:08:30 11 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:08:30 11 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:08:30 11 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:08:30 11 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:08:30 11 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:08:30 11 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:08:30 11 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:08:30 11 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 05:08:30 11 Mar 2017 UTC 08:52:30 11 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 1660 08:52:31 11 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:55:33 11 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 1792 08:55:33 11 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:55:33 11 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:55:33 11 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:55:33 11 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:55:33 11 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170310225533 ] 08:55:33 11 Mar 2017 UTC: INFO: Base.py(1333): PID:1799 08:55:34 11 Mar 2017 UTC: INFO: Base.py(1375): Started processing 08:55:34 11 Mar 2017 UTC 08:55:34 11 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:55:35 11 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:55:35 11 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:55:35 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:55:35 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:361 calls_made:1 call_cycle:0 08:55:35 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:55:35 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:361 calls_made:1 call_cycle:0 08:55:35 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:55:35 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:361 calls_made:1 call_cycle:0 08:55:35 11 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:361 calls_made:1 call_cycle:0 2243.4260 -15759.9180 03/11/17 08:50:01 UTC) to sdrifter@soest.hawaii.edu 08:55:35 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:361 calls_made:1 call_cycle:0 08:55:35 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:55:35 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:361 calls_made:1 call_cycle:0 08:55:35 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:55:35 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:361 calls_made:1 call_cycle:0 08:55:35 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:55:35 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:361 calls_made:1 call_cycle:0 08:55:35 11 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:55:35 11 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:55:40 11 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:55:41 11 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:55:41 11 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:55:41 11 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:55:41 11 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:55:41 11 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:55:43 11 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0361lz 08:55:43 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0361lz.x00 08:55:43 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0361lz.x01 08:55:43 11 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0361lz.r in process_file_group 08:55:43 11 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260361.log 08:55:43 11 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:55:43 11 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0361dz 08:55:43 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0361dz.x00 08:55:43 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0361dz.x01 08:55:43 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0361dz.x02 08:55:43 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0361dz.x03 08:55:43 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0361dz.x04 08:55:43 11 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0361dz.r in process_file_group 08:55:44 11 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [361] 08:55:44 11 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [361] 08:55:44 11 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260361) for profiles 08:55:44 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:55:44 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/697) 697 to QC_BAD because CT out of water 08:55:44 11 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.012m) 08:55:44 11 Mar 2017 UTC: INFO: QC.py(365): Changed (27/697) 214 215 220 221 224 233 235 243:245 247 248 250 ... to QC_PROBABLY_BAD because raw temperature spikes 08:55:44 11 Mar 2017 UTC: INFO: QC.py(408): Changed (24/697) 214 220 221 224 233 235 243:245 247 248 250 258 ... to QC_PROBABLY_BAD because raw conductivity spikes 08:55:44 11 Mar 2017 UTC: INFO: QC.py(180): Changed (27/697) 214 215 220 221 224 233 235 243:245 247 248 250 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:55:44 11 Mar 2017 UTC: INFO: QC.py(180): Changed (1/697) 279 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 08:55:44 11 Mar 2017 UTC: INFO: QC.py(180): Changed (1/697) 697 to QC_BAD because changed raw cond implies changed raw salinity 08:55:44 11 Mar 2017 UTC: INFO: QC.py(365): Changed (27/697) 214 215 220 221 224 233 235 243:245 247 248 250 ... to QC_INTERPOLATED because temperature spikes 08:55:44 11 Mar 2017 UTC: INFO: QC.py(408): Changed (24/697) 214 220 221 224 233 235 243:245 247 248 250 258 ... to QC_INTERPOLATED because conductivity spikes 08:55:44 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/697) 263:267 to QC_BAD because slow apogee CT flow 08:55:44 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/697) 1:6 to QC_BAD because prior to dive start 08:55:44 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/697) 695 696 to QC_BAD because end of climb 08:55:44 11 Mar 2017 UTC: INFO: QC.py(488): Changed (1/697) 262 to QC_PROBABLY_BAD because bad interpolation anchors 08:55:44 11 Mar 2017 UTC: INFO: QC.py(489): SUGGESTION: 361 bad_conductivity data_points in_between 260 262 % bad interpolation anchors 08:55:44 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/697) 1:6 263:267 695:697 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:55:44 11 Mar 2017 UTC: INFO: QC.py(180): Changed (14/697) 1:6 263:267 695:697 to QC_BAD because changed corrected salin implies changed speed 08:55:45 11 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:55:45 11 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 361 interp_salinity data_points in_between 401 409 % suspect thermal-inertia points 403:406 08:55:45 11 Mar 2017 UTC: INFO: QC.py(180): Changed (25/697) 214 215 220 221 224 233 235 243:245 247 248 250 ... to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 08:55:45 11 Mar 2017 UTC: INFO: QC.py(180): Changed (1/697) 262 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 08:55:45 11 Mar 2017 UTC: INFO: QC.py(180): Changed (1/697) 279 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 08:55:45 11 Mar 2017 UTC: INFO: QC.py(180): Changed (25/697) 214 215 220 221 224 233 235 243:245 247 248 250 ... to QC_INTERPOLATED because changed corrected temp implies changed speed 08:55:45 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.58 cm/s 08:55:45 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.34 cm/s 08:55:45 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:55:45 11 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (197/697) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:55:45 11 Mar 2017 UTC: INFO: QC.py(180): Changed (5/697) 221 261 276 291 696 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:55:45 11 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (197/697) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:55:45 11 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/697) 5 to QC_BAD because bad aa4330 oyxgen 08:55:45 11 Mar 2017 UTC: INFO: QC.py(180): Changed (5/697) 221 261 276 291 696 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:55:45 11 Mar 2017 UTC: INFO: QC.py(180): Changed (13/697) 1:4 6 263:267 695:697 to QC_BAD because changed salinity implies changed optode oxygen 08:55:45 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:55:45 11 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:55:45 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 08:55:45 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 361: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.01% reduction 08:55:45 11 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.361 08:55:45 11 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:55:45 11 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:55:45 11 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:55:46 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 08:55:46 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 08:58:44 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 08:58:46 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 08:58:46 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 08:59:21 11 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:59:21 11 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:59:21 11 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:59:21 11 Mar 2017 UTC /home/sg626/p6260361.log /home/sg626/p6260361.eng /home/sg626/p6260361.asc /home/sg626/p6260361.pro /home/sg626/p6260361.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 08:59:21 11 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:59:21 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:59:21 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:59:21 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:59:21 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:59:21 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:59:21 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:59:21 11 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:59:21 11 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:59:21 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:59:21 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:59:21 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:59:21 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:59:21 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:59:21 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:59:21 11 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:59:21 11 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:59:21 11 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:59:21 11 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:59:21 11 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:59:21 11 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:59:21 11 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:59:21 11 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:59:21 11 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 08:59:21 11 Mar 2017 UTC 12:35:36 11 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 7930 12:35:36 11 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:37:10 11 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 8038 12:37:10 11 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:37:10 11 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:37:10 11 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:37:10 11 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:37:10 11 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170311023709 ] 12:37:10 11 Mar 2017 UTC: INFO: Base.py(1333): PID:8045 12:37:10 11 Mar 2017 UTC: INFO: Base.py(1375): Started processing 12:37:10 11 Mar 2017 UTC 12:37:10 11 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:37:11 11 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:37:11 11 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:37:11 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:37:11 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:362 calls_made:1 call_cycle:0 12:37:11 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:37:11 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:362 calls_made:1 call_cycle:0 12:37:11 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:37:11 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:362 calls_made:1 call_cycle:0 12:37:11 11 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:362 calls_made:1 call_cycle:0 2244.5670 -15759.7320 03/11/17 12:33:25 UTC) to sdrifter@soest.hawaii.edu 12:37:11 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:362 calls_made:1 call_cycle:0 12:37:11 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:37:11 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:362 calls_made:1 call_cycle:0 12:37:11 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:37:11 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:362 calls_made:1 call_cycle:0 12:37:11 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:37:11 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:362 calls_made:1 call_cycle:0 12:37:11 11 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:37:11 11 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:37:17 11 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:37:18 11 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:37:18 11 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:37:18 11 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:37:18 11 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:37:18 11 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:37:20 11 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0362lz 12:37:20 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0362lz.x00 12:37:20 11 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0362lz.r in process_file_group 12:37:20 11 Mar 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0362lz.r - expected 0x2873600821, generated 0xff4eefe3 12:37:20 11 Mar 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0362lz.r - expected 0x2f6e0c07, generated 0x3159 12:37:20 11 Mar 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0362lz.r - skipping 12:37:20 11 Mar 2017 UTC: ERROR: Base.py(243): Could not process sg0362lz - skipping 12:37:20 11 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:37:20 11 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0362lz 12:37:20 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0362lz.x00 12:37:20 11 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0362lz.r in process_file_group 12:37:20 11 Mar 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0362lz.r - expected 0x2873600821, generated 0xff4eefe3 12:37:20 11 Mar 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0362lz.r - expected 0x2f6e0c07, generated 0x3159 12:37:20 11 Mar 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0362lz.r - skipping 12:37:20 11 Mar 2017 UTC: ERROR: Base.py(272): Could not process sg0362lz - skipping 12:37:20 11 Mar 2017 UTC: WARNING: Base.py(1624): No dives to process 12:37:20 11 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [] 12:37:20 11 Mar 2017 UTC: INFO: Base.py(1780): No dives found to profile 12:37:20 11 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.362 12:37:20 11 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:37:20 11 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:37:20 11 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:37:20 11 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:37:20 11 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:37:20 11 Mar 2017 UTC: ERROR: Base.py(1960): Dive [362] failed to process completely. The following files were not processed completely: /home/sg626/sg0362lz.r Glider logout not seen - retransmissions from glider possible Consult baselog_170311023709 for details. 12:37:20 11 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:37:20 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:37:20 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:37:20 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:37:20 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:37:20 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:37:20 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:37:20 11 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:37:20 11 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:37:20 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:37:20 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:37:20 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:37:20 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:37:20 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:37:20 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:37:20 11 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:37:20 11 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 12:37:20 11 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 12:37:20 11 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 12:37:20 11 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 12:37:20 11 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:37:20 11 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:37:20 11 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:37:20 11 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 12:37:20 11 Mar 2017 UTC 12:39:23 11 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 8279 12:39:23 11 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:41:52 11 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 8479 12:41:52 11 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:41:52 11 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:41:52 11 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:41:52 11 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:41:52 11 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170311024151 ] 12:41:52 11 Mar 2017 UTC: INFO: Base.py(1333): PID:8486 12:41:52 11 Mar 2017 UTC: INFO: Base.py(1375): Started processing 12:41:52 11 Mar 2017 UTC 12:41:52 11 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:41:53 11 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:41:53 11 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:41:53 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:41:53 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:362 calls_made:2 call_cycle:0 12:41:53 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:41:53 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:362 calls_made:2 call_cycle:0 12:41:53 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:41:53 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:362 calls_made:2 call_cycle:0 12:41:53 11 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:362 calls_made:2 call_cycle:0 2244.5670 -15759.7320 03/11/17 12:33:25 UTC) to sdrifter@soest.hawaii.edu 12:41:53 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:362 calls_made:2 call_cycle:0 12:41:53 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:41:53 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:362 calls_made:2 call_cycle:0 12:41:53 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:41:53 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:362 calls_made:2 call_cycle:0 12:41:53 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:41:53 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:362 calls_made:2 call_cycle:0 12:41:53 11 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:41:53 11 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:41:59 11 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:42:00 11 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:42:00 11 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:42:00 11 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:42:00 11 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:42:00 11 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:42:02 11 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0362lz 12:42:02 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0362lz.x00 12:42:02 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0362lz.x01 12:42:02 11 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0362lz.r in process_file_group 12:42:02 11 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260362.log 12:42:02 11 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:42:02 11 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0362dz 12:42:02 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0362dz.x00 12:42:02 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0362dz.x01 12:42:02 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0362dz.x02 12:42:02 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0362dz.x03 12:42:02 11 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0362dz.r in process_file_group 12:42:02 11 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [362] 12:42:02 11 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [362] 12:42:02 11 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260362) for profiles 12:42:02 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 12:42:02 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/657) 656 to QC_BAD because CT out of water 12:42:02 11 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.092m) 12:42:02 11 Mar 2017 UTC: INFO: QC.py(365): Changed (13/657) 2 3 200 203 205 210 220 238 239 253 267 279 280 to QC_PROBABLY_BAD because raw temperature spikes 12:42:02 11 Mar 2017 UTC: INFO: QC.py(408): Changed (9/657) 200 203 205 210 220 238 239 267 279 to QC_PROBABLY_BAD because raw conductivity spikes 12:42:02 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/657) 657 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 12:42:02 11 Mar 2017 UTC: INFO: QC.py(180): Changed (13/657) 2 3 200 203 205 210 220 238 239 253 267 279 280 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 12:42:02 11 Mar 2017 UTC: INFO: QC.py(180): Changed (2/657) 656 657 to QC_BAD because changed raw cond implies changed raw salinity 12:42:02 11 Mar 2017 UTC: INFO: QC.py(365): Changed (13/657) 2 3 200 203 205 210 220 238 239 253 267 279 280 to QC_INTERPOLATED because temperature spikes 12:42:02 11 Mar 2017 UTC: INFO: QC.py(408): Changed (9/657) 200 203 205 210 220 238 239 267 279 to QC_INTERPOLATED because conductivity spikes 12:42:02 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/657) 657 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 12:42:02 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/657) 244:248 to QC_BAD because slow apogee CT flow 12:42:02 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/657) 1:6 to QC_BAD because prior to dive start 12:42:02 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/657) 1:6 244:248 656 657 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:42:02 11 Mar 2017 UTC: INFO: QC.py(180): Changed (13/657) 1:6 244:248 656 657 to QC_BAD because changed corrected salin implies changed speed 12:42:03 11 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:42:03 11 Mar 2017 UTC: INFO: QC.py(180): Changed (11/657) 200 203 205 210 220 238 239 253 267 279 280 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 12:42:03 11 Mar 2017 UTC: INFO: QC.py(180): Changed (11/657) 200 203 205 210 220 238 239 253 267 279 280 to QC_INTERPOLATED because changed corrected temp implies changed speed 12:42:03 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.22 cm/s 12:42:03 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.38 cm/s 12:42:03 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:42:03 11 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (193/657) 134 135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:42:03 11 Mar 2017 UTC: INFO: QC.py(180): Changed (2/657) 2 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 12:42:03 11 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (193/657) 134 135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 12:42:03 11 Mar 2017 UTC: INFO: QC.py(180): Changed (2/657) 2 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 12:42:03 11 Mar 2017 UTC: INFO: QC.py(180): Changed (13/657) 1:6 244:248 656 657 to QC_BAD because changed salinity implies changed optode oxygen 12:42:03 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:42:03 11 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:42:03 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 12:42:04 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 362: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.98% reduction 12:42:04 11 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.362 12:42:04 11 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:42:04 11 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:42:04 11 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:42:04 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 12:42:04 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 12:45:00 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 12:45:01 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 12:45:01 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 12:45:36 11 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:45:36 11 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:45:36 11 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 12:45:36 11 Mar 2017 UTC /home/sg626/p6260362.log /home/sg626/p6260362.eng /home/sg626/p6260362.asc /home/sg626/p6260362.pro /home/sg626/p6260362.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 12:45:36 11 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:45:36 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:45:36 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:45:36 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:45:36 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:45:36 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:45:36 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:45:36 11 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:45:36 11 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:45:36 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:45:36 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:45:36 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:45:36 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:45:36 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:45:36 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:45:36 11 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:45:36 11 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 12:45:36 11 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 12:45:36 11 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 12:45:36 11 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 12:45:36 11 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:45:36 11 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:45:36 11 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:45:36 11 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 12:45:36 11 Mar 2017 UTC 16:20:44 11 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 14351 16:20:44 11 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:23:37 11 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 14482 16:23:37 11 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:23:37 11 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:23:37 11 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:23:37 11 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:23:37 11 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170311062337 ] 16:23:37 11 Mar 2017 UTC: INFO: Base.py(1333): PID:14490 16:23:37 11 Mar 2017 UTC: INFO: Base.py(1375): Started processing 16:23:37 11 Mar 2017 UTC 16:23:37 11 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:23:39 11 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:23:39 11 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:23:39 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:23:39 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:363 calls_made:1 call_cycle:0 16:23:39 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:23:39 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:363 calls_made:1 call_cycle:0 16:23:39 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:23:39 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:363 calls_made:1 call_cycle:0 16:23:39 11 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:363 calls_made:1 call_cycle:0 2244.1310 -15800.8880 03/11/17 16:18:30 UTC) to sdrifter@soest.hawaii.edu 16:23:39 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:363 calls_made:1 call_cycle:0 16:23:39 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:23:39 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:363 calls_made:1 call_cycle:0 16:23:39 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:23:39 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:363 calls_made:1 call_cycle:0 16:23:39 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:23:39 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:363 calls_made:1 call_cycle:0 16:23:39 11 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:23:39 11 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:23:44 11 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:23:45 11 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:23:45 11 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:23:45 11 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:23:45 11 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:23:45 11 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:23:47 11 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0363lz 16:23:47 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0363lz.x00 16:23:47 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0363lz.x01 16:23:47 11 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0363lz.r in process_file_group 16:23:47 11 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260363.log 16:23:47 11 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:23:47 11 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0363dz 16:23:47 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0363dz.x00 16:23:47 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0363dz.x01 16:23:47 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0363dz.x02 16:23:47 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0363dz.x03 16:23:47 11 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0363dz.r in process_file_group 16:23:48 11 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [363] 16:23:48 11 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [363] 16:23:48 11 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260363) for profiles 16:23:48 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:23:48 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/657) 656 657 to QC_BAD because CT out of water 16:23:48 11 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.137m) 16:23:48 11 Mar 2017 UTC: INFO: QC.py(365): Changed (17/657) 2 199 200 202 203 222 226 227 229 233 246 258 264 ... to QC_PROBABLY_BAD because raw temperature spikes 16:23:48 11 Mar 2017 UTC: INFO: QC.py(377): Changed (1/657) 657 to QC_BAD because raw salinity below bound 16:23:48 11 Mar 2017 UTC: INFO: QC.py(408): Changed (14/657) 199 202 210 222 226 227 233 246 258 264 269 270 ... to QC_PROBABLY_BAD because raw conductivity spikes 16:23:48 11 Mar 2017 UTC: INFO: QC.py(180): Changed (17/657) 2 199 200 202 203 222 226 227 229 233 246 258 264 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:23:48 11 Mar 2017 UTC: INFO: QC.py(180): Changed (1/657) 210 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 16:23:48 11 Mar 2017 UTC: INFO: QC.py(180): Changed (1/657) 656 to QC_BAD because changed raw cond implies changed raw salinity 16:23:48 11 Mar 2017 UTC: INFO: QC.py(365): Changed (17/657) 2 199 200 202 203 222 226 227 229 233 246 258 264 ... to QC_INTERPOLATED because temperature spikes 16:23:48 11 Mar 2017 UTC: INFO: QC.py(377): Changed (1/657) 657 to QC_BAD because salinity below bound 16:23:48 11 Mar 2017 UTC: INFO: QC.py(408): Changed (14/657) 199 202 210 222 226 227 233 246 258 264 269 270 ... to QC_INTERPOLATED because conductivity spikes 16:23:48 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/657) 244:248 to QC_BAD because slow apogee CT flow 16:23:48 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/657) 1:6 to QC_BAD because prior to dive start 16:23:48 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/657) 1:6 244:248 656 657 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:23:48 11 Mar 2017 UTC: INFO: QC.py(180): Changed (13/657) 1:6 244:248 656 657 to QC_BAD because changed corrected salin implies changed speed 16:23:49 11 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:23:49 11 Mar 2017 UTC: INFO: QC.py(180): Changed (15/657) 199 200 202 203 222 226 227 229 233 258 264 269 ... to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 16:23:49 11 Mar 2017 UTC: INFO: QC.py(180): Changed (1/657) 210 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 16:23:49 11 Mar 2017 UTC: INFO: QC.py(180): Changed (15/657) 199 200 202 203 222 226 227 229 233 258 264 269 ... to QC_INTERPOLATED because changed corrected temp implies changed speed 16:23:49 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.19 cm/s 16:23:49 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.19 cm/s 16:23:49 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:23:49 11 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (190/657) 134 135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:23:49 11 Mar 2017 UTC: INFO: QC.py(180): Changed (4/657) 2 226 246 276 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:23:49 11 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (190/657) 134 135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:23:49 11 Mar 2017 UTC: INFO: QC.py(180): Changed (4/657) 2 226 246 276 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:23:49 11 Mar 2017 UTC: INFO: QC.py(180): Changed (13/657) 1:6 244:248 656 657 to QC_BAD because changed salinity implies changed optode oxygen 16:23:49 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:23:49 11 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:23:49 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:23:49 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 363: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.98% reduction 16:23:50 11 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.363 16:23:50 11 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:23:50 11 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:23:50 11 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:23:50 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:23:50 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:26:48 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 16:26:49 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:26:49 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:27:24 11 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:27:24 11 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:27:24 11 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:27:24 11 Mar 2017 UTC /home/sg626/p6260363.log /home/sg626/p6260363.eng /home/sg626/p6260363.asc /home/sg626/p6260363.pro /home/sg626/p6260363.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:27:24 11 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:27:24 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:27:24 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:27:24 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:27:24 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:27:24 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:27:24 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:27:24 11 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:27:24 11 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:27:24 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:27:24 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:27:24 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:27:24 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:27:24 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:27:24 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:27:24 11 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:27:24 11 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:27:24 11 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:27:24 11 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:27:24 11 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:27:24 11 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:27:24 11 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:27:24 11 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:27:24 11 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 16:27:24 11 Mar 2017 UTC 20:05:45 11 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 21443 20:05:45 11 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:08:51 11 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 21570 20:08:51 11 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:08:51 11 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:08:51 11 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:08:51 11 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:08:51 11 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170311100850 ] 20:08:51 11 Mar 2017 UTC: INFO: Base.py(1333): PID:21578 20:08:51 11 Mar 2017 UTC: INFO: Base.py(1375): Started processing 20:08:51 11 Mar 2017 UTC 20:08:51 11 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:08:52 11 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:08:52 11 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:08:52 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:08:52 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:364 calls_made:1 call_cycle:0 20:08:52 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:08:52 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:364 calls_made:1 call_cycle:0 20:08:52 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:08:52 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:364 calls_made:1 call_cycle:0 20:08:52 11 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:364 calls_made:1 call_cycle:0 2244.5360 -15759.1470 03/11/17 20:03:31 UTC) to sdrifter@soest.hawaii.edu 20:08:52 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:364 calls_made:1 call_cycle:0 20:08:52 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:08:52 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:364 calls_made:1 call_cycle:0 20:08:52 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:08:52 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:364 calls_made:1 call_cycle:0 20:08:52 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:08:52 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:364 calls_made:1 call_cycle:0 20:08:52 11 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:08:52 11 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:08:58 11 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:08:59 11 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:08:59 11 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:08:59 11 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:08:59 11 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:08:59 11 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:09:01 11 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0364lz 20:09:01 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0364lz.x00 20:09:01 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0364lz.x01 20:09:01 11 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0364lz.r in process_file_group 20:09:01 11 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260364.log 20:09:01 11 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:09:01 11 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0364dz 20:09:01 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0364dz.x00 20:09:01 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0364dz.x01 20:09:01 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0364dz.x02 20:09:01 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0364dz.x03 20:09:01 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0364dz.x04 20:09:01 11 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0364dz.r in process_file_group 20:09:01 11 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [364] 20:09:01 11 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [364] 20:09:01 11 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260364) for profiles 20:09:01 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 20:09:02 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/684) 682:684 to QC_BAD because CT out of water 20:09:02 11 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.139m) 20:09:02 11 Mar 2017 UTC: INFO: QC.py(365): Changed (22/684) 3 199 201 208 210 217 218 222 229 231 236 243 250 ... to QC_PROBABLY_BAD because raw temperature spikes 20:09:02 11 Mar 2017 UTC: INFO: QC.py(377): Changed (2/684) 683 684 to QC_BAD because raw salinity below bound 20:09:02 11 Mar 2017 UTC: INFO: QC.py(408): Changed (19/684) 199 201 208 217 218 229 231 236 243 250 255 259:261 ... to QC_PROBABLY_BAD because raw conductivity spikes 20:09:02 11 Mar 2017 UTC: INFO: QC.py(180): Changed (21/684) 3 199 201 208 210 217 218 222 229 231 236 243 250 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 20:09:02 11 Mar 2017 UTC: INFO: QC.py(180): Changed (1/684) 290 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 20:09:02 11 Mar 2017 UTC: INFO: QC.py(180): Changed (1/684) 682 to QC_BAD because changed raw cond implies changed raw salinity 20:09:02 11 Mar 2017 UTC: INFO: QC.py(365): Changed (22/684) 3 199 201 208 210 217 218 222 229 231 236 243 250 ... to QC_INTERPOLATED because temperature spikes 20:09:02 11 Mar 2017 UTC: INFO: QC.py(377): Changed (2/684) 683 684 to QC_BAD because salinity below bound 20:09:02 11 Mar 2017 UTC: INFO: QC.py(408): Changed (19/684) 199 201 208 217 218 229 231 236 243 250 255 259:261 ... to QC_INTERPOLATED because conductivity spikes 20:09:02 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/684) 248:252 to QC_BAD because slow apogee CT flow 20:09:02 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/684) 1:6 to QC_BAD because prior to dive start 20:09:02 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/684) 1:6 248:252 682:684 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 20:09:02 11 Mar 2017 UTC: INFO: QC.py(180): Changed (14/684) 1:6 248:252 682:684 to QC_BAD because changed corrected salin implies changed speed 20:09:02 11 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 20:09:02 11 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 364 interp_salinity data_points in_between 384 398 % suspect thermal-inertia points 388:390 20:09:02 11 Mar 2017 UTC: INFO: QC.py(180): Changed (19/684) 199 201 208 210 217 218 222 229 231 236 243 255 ... to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 20:09:02 11 Mar 2017 UTC: INFO: QC.py(180): Changed (1/684) 290 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 20:09:02 11 Mar 2017 UTC: INFO: QC.py(180): Changed (19/684) 199 201 208 210 217 218 222 229 231 236 243 255 ... to QC_INTERPOLATED because changed corrected temp implies changed speed 20:09:02 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.65 cm/s 20:09:02 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.24 cm/s 20:09:02 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 20:09:02 11 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (189/684) 135 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 20:09:02 11 Mar 2017 UTC: INFO: QC.py(180): Changed (6/684) 3 201 231 236 261 683 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 20:09:02 11 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (189/684) 135 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 20:09:02 11 Mar 2017 UTC: INFO: QC.py(180): Changed (6/684) 3 201 231 236 261 683 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 20:09:02 11 Mar 2017 UTC: INFO: QC.py(180): Changed (14/684) 1:6 248:252 682:684 to QC_BAD because changed salinity implies changed optode oxygen 20:09:02 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 20:09:02 11 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 20:09:02 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 20:09:03 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 364: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.05% reduction 20:09:03 11 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.364 20:09:03 11 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:09:03 11 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:09:03 11 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:09:03 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 20:09:03 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 20:12:04 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 20:12:05 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 20:12:05 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 20:12:41 11 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:12:41 11 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:12:41 11 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:12:41 11 Mar 2017 UTC /home/sg626/p6260364.log /home/sg626/p6260364.eng /home/sg626/p6260364.asc /home/sg626/p6260364.pro /home/sg626/p6260364.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 20:12:41 11 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:12:41 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:12:41 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:12:41 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:12:41 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:12:41 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:12:41 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:12:41 11 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:12:41 11 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:12:41 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:12:41 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:12:41 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:12:41 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:12:41 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:12:41 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:12:41 11 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:12:41 11 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:12:41 11 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:12:41 11 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:12:41 11 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:12:41 11 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:12:41 11 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:12:41 11 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:12:41 11 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 20:12:41 11 Mar 2017 UTC 23:54:09 11 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 27955 23:54:09 11 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 23:57:13 11 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 28076 23:57:13 11 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:57:13 11 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:57:13 11 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:57:13 11 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:57:13 11 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170311135712 ] 23:57:13 11 Mar 2017 UTC: INFO: Base.py(1333): PID:28093 23:57:13 11 Mar 2017 UTC: INFO: Base.py(1375): Started processing 23:57:13 11 Mar 2017 UTC 23:57:13 11 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:57:14 11 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:57:14 11 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:57:14 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:57:14 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:365 calls_made:1 call_cycle:0 23:57:14 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:57:14 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:365 calls_made:1 call_cycle:0 23:57:14 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:57:14 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:365 calls_made:1 call_cycle:0 23:57:14 11 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:365 calls_made:1 call_cycle:0 2243.8530 -15759.8690 03/11/17 23:51:55 UTC) to sdrifter@soest.hawaii.edu 23:57:14 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:365 calls_made:1 call_cycle:0 23:57:14 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:57:14 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:365 calls_made:1 call_cycle:0 23:57:14 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:57:14 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:365 calls_made:1 call_cycle:0 23:57:14 11 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:57:14 11 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:365 calls_made:1 call_cycle:0 23:57:14 11 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:57:14 11 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:57:20 11 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:57:21 11 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:57:21 11 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:57:21 11 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:57:21 11 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:57:21 11 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:57:23 11 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0365lz 23:57:23 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0365lz.x00 23:57:23 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0365lz.x01 23:57:23 11 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0365lz.r in process_file_group 23:57:23 11 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260365.log 23:57:23 11 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:57:23 11 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0365dz 23:57:23 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0365dz.x00 23:57:23 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0365dz.x01 23:57:23 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0365dz.x02 23:57:23 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0365dz.x03 23:57:23 11 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0365dz.x04 23:57:23 11 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0365dz.r in process_file_group 23:57:24 11 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [365] 23:57:24 11 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [365] 23:57:24 11 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260365) for profiles 23:57:24 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 23:57:24 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/679) 677:679 to QC_BAD because CT out of water 23:57:24 11 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.166m) 23:57:24 11 Mar 2017 UTC: INFO: QC.py(365): Changed (12/679) 197 201 225 226 228 230 257 259 262 292 677 678 to QC_PROBABLY_BAD because raw temperature spikes 23:57:24 11 Mar 2017 UTC: INFO: QC.py(377): Changed (1/679) 679 to QC_BAD because raw salinity below bound 23:57:24 11 Mar 2017 UTC: INFO: QC.py(408): Changed (8/679) 197 201 225 226 230 257 262 292 to QC_PROBABLY_BAD because raw conductivity spikes 23:57:24 11 Mar 2017 UTC: INFO: QC.py(180): Changed (12/679) 197 201 225 226 228 230 257 259 262 292 677 678 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 23:57:24 11 Mar 2017 UTC: INFO: QC.py(180): Changed (2/679) 677 678 to QC_BAD because changed raw cond implies changed raw salinity 23:57:24 11 Mar 2017 UTC: INFO: QC.py(365): Changed (12/679) 197 201 225 226 228 230 257 259 262 292 677 678 to QC_INTERPOLATED because temperature spikes 23:57:24 11 Mar 2017 UTC: INFO: QC.py(377): Changed (1/679) 679 to QC_BAD because salinity below bound 23:57:24 11 Mar 2017 UTC: INFO: QC.py(408): Changed (8/679) 197 201 225 226 230 257 262 292 to QC_INTERPOLATED because conductivity spikes 23:57:24 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/679) 248:252 to QC_BAD because slow apogee CT flow 23:57:24 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/679) 1:6 to QC_BAD because prior to dive start 23:57:24 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/679) 676 to QC_BAD because end of climb 23:57:24 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/679) 1:6 248:252 676:679 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 23:57:24 11 Mar 2017 UTC: INFO: QC.py(180): Changed (15/679) 1:6 248:252 676:679 to QC_BAD because changed corrected salin implies changed speed 23:57:25 11 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 23:57:25 11 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 365 interp_salinity data_points in_between 120 126 % suspect thermal-inertia points 125 23:57:25 11 Mar 2017 UTC: INFO: QC.py(180): Changed (10/679) 197 201 225 226 228 230 257 259 262 292 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 23:57:25 11 Mar 2017 UTC: INFO: QC.py(180): Changed (10/679) 197 201 225 226 228 230 257 259 262 292 to QC_INTERPOLATED because changed corrected temp implies changed speed 23:57:25 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.65 cm/s 23:57:25 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.47 cm/s 23:57:25 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 23:57:25 11 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (196/679) 133:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 23:57:25 11 Mar 2017 UTC: INFO: QC.py(180): Changed (4/679) 201 226 677 678 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 23:57:25 11 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (196/679) 133:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 23:57:25 11 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (4/679) 3 676:678 to QC_BAD because bad aa4330 oyxgen 23:57:25 11 Mar 2017 UTC: INFO: QC.py(180): Changed (2/679) 201 226 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 23:57:25 11 Mar 2017 UTC: INFO: QC.py(180): Changed (11/679) 1 2 4:6 248:252 679 to QC_BAD because changed salinity implies changed optode oxygen 23:57:25 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 23:57:25 11 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 23:57:25 11 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 23:57:25 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 365: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.21% reduction 23:57:25 11 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.365 23:57:25 11 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:57:25 11 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:57:25 11 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:57:25 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 23:57:25 11 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 00:00:24 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 00:00:25 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 00:00:25 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 00:01:01 12 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:01:01 12 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:01:01 12 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:01:01 12 Mar 2017 UTC /home/sg626/p6260365.log /home/sg626/p6260365.eng /home/sg626/p6260365.asc /home/sg626/p6260365.pro /home/sg626/p6260365.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 00:01:01 12 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:01:01 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:01:01 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:01:01 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:01:01 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:01:01 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:01:01 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:01:01 12 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:01:01 12 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:01:01 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:01:01 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:01:01 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:01:01 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:01:01 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:01:01 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:01:01 12 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:01:01 12 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:01:01 12 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:01:01 12 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:01:01 12 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:01:01 12 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:01:01 12 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:01:01 12 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:01:01 12 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 00:01:01 12 Mar 2017 UTC 03:45:36 12 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 2218 03:45:37 12 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:48:42 12 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 2350 03:48:42 12 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:48:42 12 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:48:42 12 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:48:42 12 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:48:42 12 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170311174841 ] 03:48:42 12 Mar 2017 UTC: INFO: Base.py(1333): PID:2357 03:48:42 12 Mar 2017 UTC: INFO: Base.py(1375): Started processing 03:48:42 12 Mar 2017 UTC 03:48:42 12 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:48:43 12 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:48:43 12 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:48:43 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:48:43 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:366 calls_made:1 call_cycle:0 03:48:43 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:48:43 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:366 calls_made:1 call_cycle:0 03:48:43 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:48:43 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:366 calls_made:1 call_cycle:0 03:48:43 12 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:366 calls_made:1 call_cycle:0 2244.5170 -15759.6570 03/12/17 03:43:19 UTC) to sdrifter@soest.hawaii.edu 03:48:43 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:366 calls_made:1 call_cycle:0 03:48:43 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:48:43 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:366 calls_made:1 call_cycle:0 03:48:43 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:48:43 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:366 calls_made:1 call_cycle:0 03:48:43 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:48:43 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:366 calls_made:1 call_cycle:0 03:48:43 12 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:48:43 12 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:48:49 12 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:48:50 12 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:48:50 12 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:48:50 12 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:48:50 12 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:48:50 12 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:48:52 12 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0366lz 03:48:52 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0366lz.x00 03:48:52 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0366lz.x01 03:48:52 12 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0366lz.r in process_file_group 03:48:52 12 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260366.log 03:48:52 12 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:48:52 12 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0366dz 03:48:52 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0366dz.x00 03:48:52 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0366dz.x01 03:48:52 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0366dz.x02 03:48:52 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0366dz.x03 03:48:52 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0366dz.x04 03:48:52 12 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0366dz.r in process_file_group 03:48:52 12 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [366] 03:48:52 12 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [366] 03:48:53 12 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260366) for profiles 03:48:53 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 03:48:53 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/703) 703 to QC_BAD because CT out of water 03:48:53 12 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.072m) 03:48:53 12 Mar 2017 UTC: INFO: QC.py(365): Changed (12/703) 2 230 243 253 256 261:263 280 293 300 308 to QC_PROBABLY_BAD because raw temperature spikes 03:48:53 12 Mar 2017 UTC: INFO: QC.py(377): Changed (1/703) 703 to QC_BAD because raw salinity below bound 03:48:53 12 Mar 2017 UTC: INFO: QC.py(408): Changed (11/703) 3 230 234 236 243 250 253 256 293 300 308 to QC_PROBABLY_BAD because raw conductivity spikes 03:48:53 12 Mar 2017 UTC: INFO: QC.py(180): Changed (12/703) 2 230 243 253 256 261:263 280 293 300 308 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 03:48:53 12 Mar 2017 UTC: INFO: QC.py(180): Changed (4/703) 3 234 236 250 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 03:48:53 12 Mar 2017 UTC: INFO: QC.py(365): Changed (12/703) 2 230 243 253 256 261:263 280 293 300 308 to QC_INTERPOLATED because temperature spikes 03:48:53 12 Mar 2017 UTC: INFO: QC.py(377): Changed (1/703) 703 to QC_BAD because salinity below bound 03:48:53 12 Mar 2017 UTC: INFO: QC.py(408): Changed (11/703) 3 230 234 236 243 250 253 256 293 300 308 to QC_INTERPOLATED because conductivity spikes 03:48:53 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/703) 271:275 to QC_BAD because slow apogee CT flow 03:48:53 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/703) 1:6 to QC_BAD because prior to dive start 03:48:53 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/703) 1:6 271:275 703 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:48:53 12 Mar 2017 UTC: INFO: QC.py(180): Changed (12/703) 1:6 271:275 703 to QC_BAD because changed corrected salin implies changed speed 03:48:53 12 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 03:48:53 12 Mar 2017 UTC: INFO: QC.py(180): Changed (11/703) 230 243 253 256 261:263 280 293 300 308 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 03:48:54 12 Mar 2017 UTC: INFO: QC.py(180): Changed (3/703) 234 236 250 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 03:48:54 12 Mar 2017 UTC: INFO: QC.py(180): Changed (11/703) 230 243 253 256 261:263 280 293 300 308 to QC_INTERPOLATED because changed corrected temp implies changed speed 03:48:54 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.35 cm/s 03:48:54 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.17 cm/s 03:48:54 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:48:54 12 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (198/703) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:48:54 12 Mar 2017 UTC: INFO: QC.py(180): Changed (3/703) 2 256 261 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:48:54 12 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (198/703) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 03:48:54 12 Mar 2017 UTC: INFO: QC.py(180): Changed (3/703) 2 256 261 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 03:48:54 12 Mar 2017 UTC: INFO: QC.py(180): Changed (12/703) 1:6 271:275 703 to QC_BAD because changed salinity implies changed optode oxygen 03:48:54 12 Mar 2017 UTC: INFO: QC.py(180): Changed (1/703) 236 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 03:48:54 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:48:54 12 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:48:54 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 03:48:54 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 366: Data set size for profile, binned and kkyy files reduced by 12 points, a 1.71% reduction 03:48:54 12 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.366 03:48:54 12 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:48:54 12 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:48:54 12 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:48:54 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 03:48:54 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 03:51:53 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 03:51:54 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 03:51:54 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 03:52:30 12 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:52:30 12 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:52:30 12 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:52:30 12 Mar 2017 UTC /home/sg626/p6260366.log /home/sg626/p6260366.eng /home/sg626/p6260366.asc /home/sg626/p6260366.pro /home/sg626/p6260366.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 03:52:30 12 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:52:30 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:52:30 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:52:30 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:52:30 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:52:30 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:52:30 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:52:30 12 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:52:30 12 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:52:30 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:52:30 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:52:30 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:52:30 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:52:30 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:52:30 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:52:30 12 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:52:30 12 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:52:30 12 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:52:30 12 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:52:30 12 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:52:30 12 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:52:30 12 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:52:30 12 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:52:30 12 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 03:52:30 12 Mar 2017 UTC 07:22:43 12 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 8224 07:22:43 12 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:23:40 12 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 8319 07:23:40 12 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:23:40 12 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:23:40 12 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:23:40 12 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:23:40 12 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170311212339 ] 07:23:40 12 Mar 2017 UTC: INFO: Base.py(1333): PID:8326 07:23:40 12 Mar 2017 UTC: INFO: Base.py(1375): Started processing 07:23:40 12 Mar 2017 UTC 07:23:40 12 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:23:41 12 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:23:41 12 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:23:41 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:23:41 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 07:23:41 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:23:41 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 07:23:41 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:23:41 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 07:23:41 12 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (No GPS fix available for this call) to sdrifter@soest.hawaii.edu 07:23:41 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 07:23:41 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:23:41 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 07:23:41 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:23:41 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 07:23:41 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:23:41 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 07:23:41 12 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:23:41 12 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:23:47 12 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:23:48 12 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:23:48 12 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:23:48 12 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:23:48 12 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:23:48 12 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:23:50 12 Mar 2017 UTC: WARNING: Base.py(1624): No dives to process 07:23:50 12 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [] 07:23:50 12 Mar 2017 UTC: INFO: Base.py(1780): No dives found to profile 07:23:50 12 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.366 07:23:50 12 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:23:50 12 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:23:50 12 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:23:50 12 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:23:50 12 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:23:50 12 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:23:50 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:23:50 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:23:50 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:23:50 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:23:50 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:23:50 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:23:50 12 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:23:50 12 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:23:50 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:23:50 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:23:50 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:23:50 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:23:50 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:23:50 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:23:50 12 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:23:50 12 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:23:50 12 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:23:50 12 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:23:50 12 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:23:50 12 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:23:50 12 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:23:50 12 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:23:50 12 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 07:23:50 12 Mar 2017 UTC 07:27:52 12 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 8588 07:27:52 12 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:30:42 12 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 8798 07:30:42 12 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:30:42 12 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:30:42 12 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:30:42 12 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:30:42 12 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170311213041 ] 07:30:42 12 Mar 2017 UTC: INFO: Base.py(1333): PID:8806 07:30:42 12 Mar 2017 UTC: INFO: Base.py(1375): Started processing 07:30:42 12 Mar 2017 UTC 07:30:42 12 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:30:43 12 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:30:43 12 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:30:43 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:30:43 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:367 calls_made:3 call_cycle:0 07:30:43 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:30:43 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:367 calls_made:3 call_cycle:0 07:30:43 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:30:43 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:367 calls_made:3 call_cycle:0 07:30:43 12 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:367 calls_made:3 call_cycle:0 2243.6090 -15800.9000 03/12/17 07:20:31 UTC) to sdrifter@soest.hawaii.edu 07:30:43 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:367 calls_made:3 call_cycle:0 07:30:43 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:30:43 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:367 calls_made:3 call_cycle:0 07:30:43 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:30:43 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:367 calls_made:3 call_cycle:0 07:30:43 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:30:43 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:367 calls_made:3 call_cycle:0 07:30:43 12 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:30:43 12 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:30:49 12 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:30:50 12 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:30:50 12 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:30:50 12 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:30:50 12 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:30:50 12 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:30:52 12 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0367lz 07:30:52 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0367lz.x00 07:30:52 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0367lz.x01 07:30:52 12 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0367lz.r in process_file_group 07:30:52 12 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260367.log 07:30:52 12 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:30:52 12 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0367dz 07:30:52 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0367dz.x00 07:30:52 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0367dz.x01 07:30:52 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0367dz.x02 07:30:52 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0367dz.x03 07:30:52 12 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0367dz.r in process_file_group 07:30:52 12 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [367] 07:30:52 12 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [367] 07:30:52 12 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260367) for profiles 07:30:52 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 07:30:52 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/611) 610 611 to QC_BAD because CT out of water 07:30:52 12 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.069m) 07:30:52 12 Mar 2017 UTC: INFO: QC.py(365): Changed (12/611) 217 231 232 268 274 276:278 286 289 291 610 to QC_PROBABLY_BAD because raw temperature spikes 07:30:52 12 Mar 2017 UTC: INFO: QC.py(408): Changed (9/611) 217 231 232 248 274 278 286 289 291 to QC_PROBABLY_BAD because raw conductivity spikes 07:30:53 12 Mar 2017 UTC: INFO: QC.py(180): Changed (12/611) 217 231 232 268 274 276:278 286 289 291 610 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:30:53 12 Mar 2017 UTC: INFO: QC.py(180): Changed (1/611) 248 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 07:30:53 12 Mar 2017 UTC: INFO: QC.py(180): Changed (2/611) 610 611 to QC_BAD because changed raw cond implies changed raw salinity 07:30:53 12 Mar 2017 UTC: INFO: QC.py(365): Changed (12/611) 217 231 232 268 274 276:278 286 289 291 610 to QC_INTERPOLATED because temperature spikes 07:30:53 12 Mar 2017 UTC: INFO: QC.py(408): Changed (9/611) 217 231 232 248 274 278 286 289 291 to QC_INTERPOLATED because conductivity spikes 07:30:53 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/611) 254:258 to QC_BAD because slow apogee CT flow 07:30:53 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/611) 1:6 to QC_BAD because prior to dive start 07:30:53 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/611) 1:6 254:258 610 611 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:30:53 12 Mar 2017 UTC: INFO: QC.py(180): Changed (13/611) 1:6 254:258 610 611 to QC_BAD because changed corrected salin implies changed speed 07:30:53 12 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:30:53 12 Mar 2017 UTC: INFO: QC.py(180): Changed (11/611) 217 231 232 268 274 276:278 286 289 291 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 07:30:53 12 Mar 2017 UTC: INFO: QC.py(180): Changed (1/611) 248 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 07:30:53 12 Mar 2017 UTC: INFO: QC.py(180): Changed (11/611) 217 231 232 268 274 276:278 286 289 291 to QC_INTERPOLATED because changed corrected temp implies changed speed 07:30:53 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.77 cm/s 07:30:53 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.16 cm/s 07:30:53 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:30:53 12 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (193/611) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:30:53 12 Mar 2017 UTC: INFO: QC.py(180): Changed (5/611) 231 276 286 291 610 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:30:53 12 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (193/611) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 07:30:53 12 Mar 2017 UTC: INFO: QC.py(180): Changed (5/611) 231 276 286 291 610 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:30:53 12 Mar 2017 UTC: INFO: QC.py(180): Changed (13/611) 1:6 254:258 610 611 to QC_BAD because changed salinity implies changed optode oxygen 07:30:53 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:30:53 12 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:30:53 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 07:30:54 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 367: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.13% reduction 07:30:54 12 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.367 07:30:54 12 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:30:54 12 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:30:54 12 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:30:54 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 07:30:54 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:33:57 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 07:33:58 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:33:58 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:34:33 12 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:34:33 12 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:34:33 12 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:34:33 12 Mar 2017 UTC /home/sg626/p6260367.log /home/sg626/p6260367.eng /home/sg626/p6260367.asc /home/sg626/p6260367.pro /home/sg626/p6260367.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:34:33 12 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:34:33 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:34:33 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:34:33 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:34:33 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:34:33 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:34:33 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:34:33 12 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:34:33 12 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:34:33 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:34:33 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:34:33 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:34:33 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:34:33 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:34:33 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:34:33 12 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:34:33 12 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:34:33 12 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:34:33 12 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:34:33 12 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:34:33 12 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:34:33 12 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:34:33 12 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:34:33 12 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 07:34:33 12 Mar 2017 UTC 11:05:26 12 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 14523 11:05:26 12 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 11:08:10 12 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 14642 11:08:10 12 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:08:10 12 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 11:08:10 12 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 11:08:10 12 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:08:10 12 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170312010809 ] 11:08:10 12 Mar 2017 UTC: INFO: Base.py(1333): PID:14649 11:08:10 12 Mar 2017 UTC: INFO: Base.py(1375): Started processing 11:08:10 12 Mar 2017 UTC 11:08:10 12 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 11:08:11 12 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 11:08:11 12 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:08:11 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:08:11 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:368 calls_made:1 call_cycle:0 11:08:11 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:08:11 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:368 calls_made:1 call_cycle:0 11:08:11 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:08:11 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:368 calls_made:1 call_cycle:0 11:08:11 12 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:368 calls_made:1 call_cycle:0 2243.9620 -15759.7110 03/12/17 11:03:04 UTC) to sdrifter@soest.hawaii.edu 11:08:11 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:368 calls_made:1 call_cycle:0 11:08:11 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:08:11 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:368 calls_made:1 call_cycle:0 11:08:11 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:08:11 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:368 calls_made:1 call_cycle:0 11:08:11 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:08:11 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:368 calls_made:1 call_cycle:0 11:08:11 12 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:08:11 12 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:08:17 12 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:08:18 12 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:08:18 12 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 11:08:18 12 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:08:18 12 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:08:18 12 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 11:08:20 12 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0368lz 11:08:20 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0368lz.x00 11:08:20 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0368lz.x01 11:08:20 12 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0368lz.r in process_file_group 11:08:20 12 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260368.log 11:08:20 12 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 11:08:20 12 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0368dz 11:08:20 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0368dz.x00 11:08:20 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0368dz.x01 11:08:20 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0368dz.x02 11:08:20 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0368dz.x03 11:08:20 12 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0368dz.r in process_file_group 11:08:21 12 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [368] 11:08:21 12 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [368] 11:08:21 12 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260368) for profiles 11:08:21 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 11:08:21 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/617) 617 to QC_BAD because CT out of water 11:08:21 12 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.116m) 11:08:21 12 Mar 2017 UTC: INFO: QC.py(365): Changed (8/617) 2 209 229:232 270 297 to QC_PROBABLY_BAD because raw temperature spikes 11:08:21 12 Mar 2017 UTC: INFO: QC.py(377): Changed (1/617) 617 to QC_BAD because raw salinity below bound 11:08:21 12 Mar 2017 UTC: INFO: QC.py(408): Changed (8/617) 209 220 229:232 236 297 to QC_PROBABLY_BAD because raw conductivity spikes 11:08:21 12 Mar 2017 UTC: INFO: QC.py(180): Changed (8/617) 2 209 229:232 270 297 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 11:08:21 12 Mar 2017 UTC: INFO: QC.py(180): Changed (2/617) 220 236 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 11:08:21 12 Mar 2017 UTC: INFO: QC.py(365): Changed (8/617) 2 209 229:232 270 297 to QC_INTERPOLATED because temperature spikes 11:08:21 12 Mar 2017 UTC: INFO: QC.py(377): Changed (1/617) 617 to QC_BAD because salinity below bound 11:08:21 12 Mar 2017 UTC: INFO: QC.py(408): Changed (8/617) 209 220 229:232 236 297 to QC_INTERPOLATED because conductivity spikes 11:08:21 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/617) 257:261 to QC_BAD because slow apogee CT flow 11:08:21 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/617) 1:6 to QC_BAD because prior to dive start 11:08:21 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/617) 1:6 257:261 617 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 11:08:21 12 Mar 2017 UTC: INFO: QC.py(180): Changed (12/617) 1:6 257:261 617 to QC_BAD because changed corrected salin implies changed speed 11:08:22 12 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 11:08:22 12 Mar 2017 UTC: INFO: QC.py(180): Changed (7/617) 209 229:232 270 297 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 11:08:22 12 Mar 2017 UTC: INFO: QC.py(180): Changed (2/617) 220 236 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 11:08:22 12 Mar 2017 UTC: INFO: QC.py(180): Changed (7/617) 209 229:232 270 297 to QC_INTERPOLATED because changed corrected temp implies changed speed 11:08:22 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.68 cm/s 11:08:22 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.27 cm/s 11:08:22 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 11:08:22 12 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (193/617) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 11:08:22 12 Mar 2017 UTC: INFO: QC.py(180): Changed (2/617) 2 231 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 11:08:22 12 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (193/617) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 11:08:22 12 Mar 2017 UTC: INFO: QC.py(180): Changed (2/617) 2 231 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 11:08:22 12 Mar 2017 UTC: INFO: QC.py(180): Changed (12/617) 1:6 257:261 617 to QC_BAD because changed salinity implies changed optode oxygen 11:08:22 12 Mar 2017 UTC: INFO: QC.py(180): Changed (1/617) 236 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 11:08:22 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 11:08:22 12 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 11:08:22 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 11:08:22 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 368: Data set size for profile, binned and kkyy files reduced by 12 points, a 1.94% reduction 11:08:22 12 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.368 11:08:22 12 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:08:22 12 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:08:22 12 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:08:23 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 11:08:23 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 11:11:23 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 11:11:24 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 11:11:24 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 11:12:01 12 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:12:01 12 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:12:01 12 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:12:01 12 Mar 2017 UTC /home/sg626/p6260368.log /home/sg626/p6260368.eng /home/sg626/p6260368.asc /home/sg626/p6260368.pro /home/sg626/p6260368.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 11:12:01 12 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:12:01 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:12:01 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:12:01 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:12:01 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:12:01 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:12:01 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:12:01 12 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:12:01 12 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:12:01 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:12:01 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:12:01 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:12:01 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:12:01 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:12:01 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:12:01 12 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:12:01 12 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 11:12:01 12 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 11:12:01 12 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 11:12:01 12 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 11:12:01 12 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:12:01 12 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:12:01 12 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:12:01 12 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 11:12:01 12 Mar 2017 UTC 14:48:39 12 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 20253 14:48:39 12 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:51:37 12 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 20464 14:51:37 12 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:51:37 12 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 14:51:37 12 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 14:51:37 12 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:51:37 12 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170312045137 ] 14:51:37 12 Mar 2017 UTC: INFO: Base.py(1333): PID:20471 14:51:37 12 Mar 2017 UTC: INFO: Base.py(1375): Started processing 14:51:37 12 Mar 2017 UTC 14:51:37 12 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 14:51:38 12 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 14:51:38 12 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:51:38 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:51:38 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:369 calls_made:1 call_cycle:0 14:51:38 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:51:38 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:369 calls_made:1 call_cycle:0 14:51:38 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:51:38 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:369 calls_made:1 call_cycle:0 14:51:38 12 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:369 calls_made:1 call_cycle:0 2244.4820 -15800.4910 03/12/17 14:46:24 UTC) to sdrifter@soest.hawaii.edu 14:51:39 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:369 calls_made:1 call_cycle:0 14:51:39 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:51:39 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:369 calls_made:1 call_cycle:0 14:51:39 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:51:39 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:369 calls_made:1 call_cycle:0 14:51:39 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:51:39 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:369 calls_made:1 call_cycle:0 14:51:39 12 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:51:39 12 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:51:44 12 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:51:45 12 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:51:45 12 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 14:51:45 12 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:51:45 12 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:51:45 12 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 14:51:47 12 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0369lz 14:51:47 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0369lz.x00 14:51:47 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0369lz.x01 14:51:47 12 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0369lz.r in process_file_group 14:51:47 12 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260369.log 14:51:47 12 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 14:51:47 12 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0369dz 14:51:47 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0369dz.x00 14:51:47 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0369dz.x01 14:51:47 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0369dz.x02 14:51:47 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0369dz.x03 14:51:47 12 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0369dz.r in process_file_group 14:51:48 12 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [369] 14:51:48 12 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [369] 14:51:48 12 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260369) for profiles 14:51:48 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 14:51:48 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/661) 660 661 to QC_BAD because CT out of water 14:51:48 12 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.075m) 14:51:48 12 Mar 2017 UTC: INFO: QC.py(365): Changed (11/661) 2 3 214 215 219 222 223 276 280 289 660 to QC_PROBABLY_BAD because raw temperature spikes 14:51:48 12 Mar 2017 UTC: INFO: QC.py(377): Changed (2/661) 660 661 to QC_BAD because raw salinity below bound 14:51:48 12 Mar 2017 UTC: INFO: QC.py(408): Changed (8/661) 214 215 219 222 223 268 280 287 to QC_PROBABLY_BAD because raw conductivity spikes 14:51:48 12 Mar 2017 UTC: INFO: QC.py(180): Changed (10/661) 2 3 214 215 219 222 223 276 280 289 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:51:48 12 Mar 2017 UTC: INFO: QC.py(180): Changed (2/661) 268 287 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 14:51:48 12 Mar 2017 UTC: INFO: QC.py(365): Changed (11/661) 2 3 214 215 219 222 223 276 280 289 660 to QC_INTERPOLATED because temperature spikes 14:51:48 12 Mar 2017 UTC: INFO: QC.py(377): Changed (2/661) 660 661 to QC_BAD because salinity below bound 14:51:48 12 Mar 2017 UTC: INFO: QC.py(408): Changed (8/661) 214 215 219 222 223 268 280 287 to QC_INTERPOLATED because conductivity spikes 14:51:48 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/661) 253:257 to QC_BAD because slow apogee CT flow 14:51:48 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/661) 1:6 to QC_BAD because prior to dive start 14:51:48 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/661) 1:6 253:257 660 661 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:51:48 12 Mar 2017 UTC: INFO: QC.py(180): Changed (13/661) 1:6 253:257 660 661 to QC_BAD because changed corrected salin implies changed speed 14:51:49 12 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:51:49 12 Mar 2017 UTC: INFO: QC.py(180): Changed (8/661) 214 215 219 222 223 276 280 289 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 14:51:49 12 Mar 2017 UTC: INFO: QC.py(180): Changed (2/661) 268 287 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 14:51:49 12 Mar 2017 UTC: INFO: QC.py(180): Changed (8/661) 214 215 219 222 223 276 280 289 to QC_INTERPOLATED because changed corrected temp implies changed speed 14:51:49 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.55 cm/s 14:51:49 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.30 cm/s 14:51:49 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:51:49 12 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (192/661) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:51:49 12 Mar 2017 UTC: INFO: QC.py(180): Changed (4/661) 2 3 276 660 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 14:51:49 12 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (192/661) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 14:51:49 12 Mar 2017 UTC: INFO: QC.py(180): Changed (4/661) 2 3 276 660 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 14:51:49 12 Mar 2017 UTC: INFO: QC.py(180): Changed (13/661) 1:6 253:257 660 661 to QC_BAD because changed salinity implies changed optode oxygen 14:51:49 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:51:49 12 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:51:49 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 14:51:49 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 369: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.97% reduction 14:51:50 12 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.369 14:51:50 12 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:51:50 12 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:51:50 12 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:51:50 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 14:51:50 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 14:54:50 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 14:54:51 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 14:54:51 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 14:55:27 12 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:55:27 12 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:55:27 12 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:55:27 12 Mar 2017 UTC /home/sg626/p6260369.log /home/sg626/p6260369.eng /home/sg626/p6260369.asc /home/sg626/p6260369.pro /home/sg626/p6260369.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 14:55:27 12 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:55:27 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:55:27 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:55:27 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:55:27 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:55:27 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:55:27 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:55:27 12 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:55:27 12 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:55:27 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:55:27 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:55:27 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:55:27 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:55:27 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:55:27 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:55:27 12 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:55:27 12 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:55:27 12 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:55:27 12 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:55:27 12 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:55:27 12 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:55:27 12 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:55:27 12 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:55:27 12 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 14:55:27 12 Mar 2017 UTC 18:30:49 12 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 26084 18:30:49 12 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 18:33:38 12 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 26204 18:33:38 12 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:33:38 12 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 18:33:38 12 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 18:33:38 12 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:33:38 12 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170312083337 ] 18:33:38 12 Mar 2017 UTC: INFO: Base.py(1333): PID:26212 18:33:38 12 Mar 2017 UTC: INFO: Base.py(1375): Started processing 18:33:38 12 Mar 2017 UTC 18:33:38 12 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 18:33:39 12 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 18:33:39 12 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:33:39 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:33:39 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:370 calls_made:1 call_cycle:0 18:33:39 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:33:39 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:370 calls_made:1 call_cycle:0 18:33:39 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:33:39 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:370 calls_made:1 call_cycle:0 18:33:39 12 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:370 calls_made:1 call_cycle:0 2244.3080 -15758.8770 03/12/17 18:28:40 UTC) to sdrifter@soest.hawaii.edu 18:33:39 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:370 calls_made:1 call_cycle:0 18:33:39 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:33:39 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:370 calls_made:1 call_cycle:0 18:33:39 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:33:39 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:370 calls_made:1 call_cycle:0 18:33:39 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:33:39 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:370 calls_made:1 call_cycle:0 18:33:39 12 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:33:39 12 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:33:45 12 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:33:46 12 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:33:46 12 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 18:33:46 12 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:33:46 12 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:33:46 12 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 18:33:48 12 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0370lz 18:33:48 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0370lz.x00 18:33:48 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0370lz.x01 18:33:48 12 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0370lz.r in process_file_group 18:33:48 12 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260370.log 18:33:48 12 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 18:33:48 12 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0370dz 18:33:48 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0370dz.x00 18:33:48 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0370dz.x01 18:33:48 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0370dz.x02 18:33:48 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0370dz.x03 18:33:48 12 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0370dz.r in process_file_group 18:33:48 12 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [370] 18:33:48 12 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [370] 18:33:49 12 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260370) for profiles 18:33:49 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 18:33:49 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/655) 654 655 to QC_BAD because CT out of water 18:33:49 12 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.075m) 18:33:49 12 Mar 2017 UTC: INFO: QC.py(365): Changed (10/655) 3 208 216 218 263 271 272 278 285 286 to QC_PROBABLY_BAD because raw temperature spikes 18:33:49 12 Mar 2017 UTC: INFO: QC.py(377): Changed (1/655) 654 to QC_BAD because raw salinity below bound 18:33:49 12 Mar 2017 UTC: INFO: QC.py(408): Changed (9/655) 216 218 251 263 271 272 275 278 286 to QC_PROBABLY_BAD because raw conductivity spikes 18:33:49 12 Mar 2017 UTC: INFO: QC.py(180): Changed (10/655) 3 208 216 218 263 271 272 278 285 286 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 18:33:49 12 Mar 2017 UTC: INFO: QC.py(180): Changed (2/655) 251 275 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 18:33:49 12 Mar 2017 UTC: INFO: QC.py(180): Changed (1/655) 655 to QC_BAD because changed raw cond implies changed raw salinity 18:33:49 12 Mar 2017 UTC: INFO: QC.py(365): Changed (10/655) 3 208 216 218 263 271 272 278 285 286 to QC_INTERPOLATED because temperature spikes 18:33:49 12 Mar 2017 UTC: INFO: QC.py(377): Changed (1/655) 654 to QC_BAD because salinity below bound 18:33:49 12 Mar 2017 UTC: INFO: QC.py(408): Changed (9/655) 216 218 251 263 271 272 275 278 286 to QC_INTERPOLATED because conductivity spikes 18:33:49 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/655) 249:253 to QC_BAD because slow apogee CT flow 18:33:49 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/655) 1:6 to QC_BAD because prior to dive start 18:33:49 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/655) 653 to QC_BAD because end of climb 18:33:49 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/655) 1:6 249:253 653:655 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 18:33:49 12 Mar 2017 UTC: INFO: QC.py(180): Changed (14/655) 1:6 249:253 653:655 to QC_BAD because changed corrected salin implies changed speed 18:33:50 12 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 18:33:50 12 Mar 2017 UTC: INFO: QC.py(180): Changed (9/655) 208 216 218 263 271 272 278 285 286 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 18:33:50 12 Mar 2017 UTC: INFO: QC.py(180): Changed (1/655) 275 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 18:33:50 12 Mar 2017 UTC: INFO: QC.py(180): Changed (9/655) 208 216 218 263 271 272 278 285 286 to QC_INTERPOLATED because changed corrected temp implies changed speed 18:33:50 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.93 cm/s 18:33:50 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.53 cm/s 18:33:50 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 18:33:50 12 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (194/655) 139 140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 18:33:50 12 Mar 2017 UTC: INFO: QC.py(180): Changed (4/655) 3 216 271 286 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 18:33:50 12 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (194/655) 139 140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 18:33:50 12 Mar 2017 UTC: INFO: QC.py(180): Changed (4/655) 3 216 271 286 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 18:33:50 12 Mar 2017 UTC: INFO: QC.py(180): Changed (14/655) 1:6 249:253 653:655 to QC_BAD because changed salinity implies changed optode oxygen 18:33:50 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 18:33:50 12 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 18:33:50 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 18:33:50 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 370: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.14% reduction 18:33:50 12 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.370 18:33:50 12 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:33:50 12 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:33:50 12 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:33:50 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 18:33:50 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 18:36:53 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 18:36:54 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 18:36:54 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 18:37:30 12 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:37:30 12 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:37:30 12 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:37:30 12 Mar 2017 UTC /home/sg626/p6260370.log /home/sg626/p6260370.eng /home/sg626/p6260370.asc /home/sg626/p6260370.pro /home/sg626/p6260370.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 18:37:30 12 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:37:30 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:37:30 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:37:30 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:37:30 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:37:30 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:37:30 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:37:30 12 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:37:30 12 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:37:30 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:37:30 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:37:30 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:37:30 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:37:30 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:37:30 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:37:30 12 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:37:30 12 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 18:37:30 12 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 18:37:30 12 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 18:37:30 12 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 18:37:30 12 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:37:30 12 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:37:30 12 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:37:30 12 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 18:37:30 12 Mar 2017 UTC 22:14:45 12 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 32308 22:14:45 12 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:17:43 12 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 32436 22:17:43 12 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:17:43 12 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:17:43 12 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:17:43 12 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:17:43 12 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170312121742 ] 22:17:43 12 Mar 2017 UTC: INFO: Base.py(1333): PID:32443 22:17:43 12 Mar 2017 UTC: INFO: Base.py(1375): Started processing 22:17:43 12 Mar 2017 UTC 22:17:43 12 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:17:44 12 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:17:44 12 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:17:44 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:17:44 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:371 calls_made:1 call_cycle:0 22:17:44 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:17:44 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:371 calls_made:1 call_cycle:0 22:17:44 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:17:44 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:371 calls_made:1 call_cycle:0 22:17:44 12 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:371 calls_made:1 call_cycle:0 2244.2790 -15759.9720 03/12/17 22:12:30 UTC) to sdrifter@soest.hawaii.edu 22:17:44 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:371 calls_made:1 call_cycle:0 22:17:44 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:17:44 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:371 calls_made:1 call_cycle:0 22:17:44 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:17:44 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:371 calls_made:1 call_cycle:0 22:17:44 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:17:44 12 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:371 calls_made:1 call_cycle:0 22:17:44 12 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:17:44 12 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:17:50 12 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:17:51 12 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:17:51 12 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:17:51 12 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:17:51 12 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:17:51 12 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:17:53 12 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0371lz 22:17:53 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0371lz.x00 22:17:53 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0371lz.x01 22:17:53 12 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0371lz.r in process_file_group 22:17:53 12 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260371.log 22:17:53 12 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 22:17:53 12 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0371dz 22:17:53 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0371dz.x00 22:17:53 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0371dz.x01 22:17:53 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0371dz.x02 22:17:53 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0371dz.x03 22:17:53 12 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0371dz.x04 22:17:53 12 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0371dz.r in process_file_group 22:17:54 12 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [371] 22:17:54 12 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [371] 22:17:54 12 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260371) for profiles 22:17:54 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 22:17:54 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/656) 655 656 to QC_BAD because CT out of water 22:17:54 12 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.122m) 22:17:54 12 Mar 2017 UTC: INFO: QC.py(365): Changed (13/656) 2 4 223 233 238 239 257 268 281 282 285 293 655 to QC_PROBABLY_BAD because raw temperature spikes 22:17:54 12 Mar 2017 UTC: INFO: QC.py(377): Changed (1/656) 656 to QC_BAD because raw salinity below bound 22:17:54 12 Mar 2017 UTC: INFO: QC.py(408): Changed (13/656) 223 233 238 239 242 256 257 268 281 282 285 288 ... to QC_PROBABLY_BAD because raw conductivity spikes 22:17:54 12 Mar 2017 UTC: INFO: QC.py(180): Changed (13/656) 2 4 223 233 238 239 257 268 281 282 285 293 655 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 22:17:54 12 Mar 2017 UTC: INFO: QC.py(180): Changed (3/656) 242 256 288 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 22:17:54 12 Mar 2017 UTC: INFO: QC.py(180): Changed (1/656) 655 to QC_BAD because changed raw cond implies changed raw salinity 22:17:54 12 Mar 2017 UTC: INFO: QC.py(365): Changed (13/656) 2 4 223 233 238 239 257 268 281 282 285 293 655 to QC_INTERPOLATED because temperature spikes 22:17:54 12 Mar 2017 UTC: INFO: QC.py(377): Changed (1/656) 656 to QC_BAD because salinity below bound 22:17:54 12 Mar 2017 UTC: INFO: QC.py(408): Changed (13/656) 223 233 238 239 242 256 257 268 281 282 285 288 ... to QC_INTERPOLATED because conductivity spikes 22:17:54 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/656) 262:266 to QC_BAD because slow apogee CT flow 22:17:54 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/656) 1:6 to QC_BAD because prior to dive start 22:17:54 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/656) 1:6 262:266 655 656 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:17:54 12 Mar 2017 UTC: INFO: QC.py(180): Changed (13/656) 1:6 262:266 655 656 to QC_BAD because changed corrected salin implies changed speed 22:17:55 12 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:17:55 12 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 371 interp_salinity data_points in_between 421 433 % suspect thermal-inertia points 425:433 22:17:55 12 Mar 2017 UTC: INFO: QC.py(180): Changed (10/656) 223 233 238 239 257 268 281 282 285 293 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 22:17:55 12 Mar 2017 UTC: INFO: QC.py(180): Changed (3/656) 242 256 288 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 22:17:55 12 Mar 2017 UTC: INFO: QC.py(180): Changed (10/656) 223 233 238 239 257 268 281 282 285 293 to QC_INTERPOLATED because changed corrected temp implies changed speed 22:17:55 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.91 cm/s 22:17:55 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.38 cm/s 22:17:55 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:17:55 12 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (193/656) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:17:55 12 Mar 2017 UTC: INFO: QC.py(180): Changed (4/656) 2 4 281 655 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 22:17:55 12 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (193/656) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 22:17:55 12 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/656) 654 to QC_BAD because bad aa4330 oyxgen 22:17:55 12 Mar 2017 UTC: INFO: QC.py(180): Changed (4/656) 2 4 281 655 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 22:17:55 12 Mar 2017 UTC: INFO: QC.py(180): Changed (13/656) 1:6 262:266 655 656 to QC_BAD because changed salinity implies changed optode oxygen 22:17:55 12 Mar 2017 UTC: INFO: QC.py(180): Changed (1/656) 256 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 22:17:55 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:17:55 12 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 22:17:55 12 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 22:17:55 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 371: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.98% reduction 22:17:55 12 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.371 22:17:55 12 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:17:55 12 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:17:55 12 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:17:55 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 22:17:55 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 22:21:00 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 22:21:01 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 22:21:01 12 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 22:21:38 12 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:21:38 12 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:21:38 12 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:21:38 12 Mar 2017 UTC /home/sg626/p6260371.log /home/sg626/p6260371.eng /home/sg626/p6260371.asc /home/sg626/p6260371.pro /home/sg626/p6260371.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 22:21:38 12 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:21:38 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:21:38 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:21:38 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:21:38 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:21:38 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:21:38 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:21:38 12 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:21:38 12 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:21:38 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:21:38 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:21:38 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:21:38 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:21:38 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:21:38 12 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:21:38 12 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:21:38 12 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:21:38 12 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:21:38 12 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:21:38 12 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:21:38 12 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:21:38 12 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:21:38 12 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:21:38 12 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 22:21:38 12 Mar 2017 UTC 02:02:08 13 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 6571 02:02:08 13 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:05:17 13 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 6700 02:05:17 13 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:05:17 13 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:05:17 13 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:05:17 13 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:05:17 13 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170312160517 ] 02:05:17 13 Mar 2017 UTC: INFO: Base.py(1333): PID:6708 02:05:17 13 Mar 2017 UTC: INFO: Base.py(1375): Started processing 02:05:17 13 Mar 2017 UTC 02:05:17 13 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:05:18 13 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:05:18 13 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:05:18 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:05:18 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:372 calls_made:1 call_cycle:0 02:05:18 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:05:18 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:372 calls_made:1 call_cycle:0 02:05:18 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:05:18 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:372 calls_made:1 call_cycle:0 02:05:18 13 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:372 calls_made:1 call_cycle:0 2245.0570 -15800.1130 03/13/17 01:59:55 UTC) to sdrifter@soest.hawaii.edu 02:05:19 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:372 calls_made:1 call_cycle:0 02:05:19 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:05:19 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:372 calls_made:1 call_cycle:0 02:05:19 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:05:19 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:372 calls_made:1 call_cycle:0 02:05:19 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:05:19 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:372 calls_made:1 call_cycle:0 02:05:19 13 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:05:19 13 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:05:24 13 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:05:25 13 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:05:25 13 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:05:25 13 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:05:25 13 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:05:25 13 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:05:27 13 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0372lz 02:05:27 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0372lz.x00 02:05:27 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0372lz.x01 02:05:27 13 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0372lz.r in process_file_group 02:05:27 13 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260372.log 02:05:27 13 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 02:05:27 13 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0372dz 02:05:27 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0372dz.x00 02:05:27 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0372dz.x01 02:05:27 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0372dz.x02 02:05:27 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0372dz.x03 02:05:27 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0372dz.x04 02:05:27 13 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0372dz.r in process_file_group 02:05:28 13 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [372] 02:05:28 13 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [372] 02:05:28 13 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260372) for profiles 02:05:28 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 02:05:28 13 Mar 2017 UTC: INFO: QC.py(365): Changed (10/684) 2:5 245 246 269 271 297 306 to QC_PROBABLY_BAD because raw temperature spikes 02:05:28 13 Mar 2017 UTC: INFO: QC.py(408): Changed (6/684) 221 223 245 246 297 306 to QC_PROBABLY_BAD because raw conductivity spikes 02:05:28 13 Mar 2017 UTC: INFO: QC.py(180): Changed (10/684) 2:5 245 246 269 271 297 306 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:05:28 13 Mar 2017 UTC: INFO: QC.py(180): Changed (2/684) 221 223 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 02:05:28 13 Mar 2017 UTC: INFO: QC.py(365): Changed (10/684) 2:5 245 246 269 271 297 306 to QC_INTERPOLATED because temperature spikes 02:05:28 13 Mar 2017 UTC: INFO: QC.py(408): Changed (6/684) 221 223 245 246 297 306 to QC_INTERPOLATED because conductivity spikes 02:05:28 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/684) 268:272 to QC_BAD because slow apogee CT flow 02:05:28 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/684) 1:6 to QC_BAD because prior to dive start 02:05:28 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/684) 1:6 268:272 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:05:28 13 Mar 2017 UTC: INFO: QC.py(180): Changed (11/684) 1:6 268:272 to QC_BAD because changed corrected salin implies changed speed 02:05:29 13 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:05:29 13 Mar 2017 UTC: INFO: QC.py(180): Changed (4/684) 245 246 297 306 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 02:05:29 13 Mar 2017 UTC: INFO: QC.py(180): Changed (2/684) 221 223 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 02:05:29 13 Mar 2017 UTC: INFO: QC.py(180): Changed (4/684) 245 246 297 306 to QC_INTERPOLATED because changed corrected temp implies changed speed 02:05:29 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.13 cm/s 02:05:29 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.35 cm/s 02:05:29 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:05:29 13 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (198/684) 153:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:05:29 13 Mar 2017 UTC: INFO: QC.py(180): Changed (7/684) 2:5 246 271 306 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:05:29 13 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (198/684) 153:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 02:05:29 13 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/684) 684 to QC_BAD because bad aa4330 oyxgen 02:05:29 13 Mar 2017 UTC: INFO: QC.py(180): Changed (7/684) 2:5 246 271 306 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:05:29 13 Mar 2017 UTC: INFO: QC.py(180): Changed (11/684) 1:6 268:272 to QC_BAD because changed salinity implies changed optode oxygen 02:05:29 13 Mar 2017 UTC: INFO: QC.py(180): Changed (1/684) 221 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 02:05:29 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:05:29 13 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:05:29 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 02:05:30 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 372: Data set size for profile, binned and kkyy files reduced by 11 points, a 1.61% reduction 02:05:30 13 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.372 02:05:30 13 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:05:30 13 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:05:30 13 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:05:30 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 02:05:30 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 02:08:34 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 02:08:35 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 02:08:35 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 02:09:12 13 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:09:12 13 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:09:12 13 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:09:12 13 Mar 2017 UTC /home/sg626/p6260372.log /home/sg626/p6260372.eng /home/sg626/p6260372.asc /home/sg626/p6260372.pro /home/sg626/p6260372.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 02:09:12 13 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:09:12 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:09:12 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:09:12 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:09:12 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:09:12 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:09:12 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:09:12 13 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:09:12 13 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:09:12 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:09:12 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:09:12 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:09:12 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:09:12 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:09:12 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:09:12 13 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:09:12 13 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:09:12 13 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:09:12 13 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:09:12 13 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:09:12 13 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:09:12 13 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:09:12 13 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:09:12 13 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 02:09:12 13 Mar 2017 UTC 05:46:42 13 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 15553 05:46:43 13 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:49:40 13 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 15700 05:49:40 13 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:49:40 13 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:49:40 13 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:49:40 13 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:49:40 13 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170312194939 ] 05:49:40 13 Mar 2017 UTC: INFO: Base.py(1333): PID:15709 05:49:40 13 Mar 2017 UTC: INFO: Base.py(1375): Started processing 05:49:40 13 Mar 2017 UTC 05:49:40 13 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:49:41 13 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:49:41 13 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:49:41 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:49:41 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:373 calls_made:1 call_cycle:0 05:49:41 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:49:41 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:373 calls_made:1 call_cycle:0 05:49:41 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:49:41 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:373 calls_made:1 call_cycle:0 05:49:41 13 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:373 calls_made:1 call_cycle:0 2243.0070 -15759.2840 03/13/17 05:44:30 UTC) to sdrifter@soest.hawaii.edu 05:49:41 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:373 calls_made:1 call_cycle:0 05:49:41 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:49:41 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:373 calls_made:1 call_cycle:0 05:49:41 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:49:41 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:373 calls_made:1 call_cycle:0 05:49:41 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:49:41 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:373 calls_made:1 call_cycle:0 05:49:41 13 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:49:41 13 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:49:47 13 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:49:48 13 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:49:48 13 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:49:48 13 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:49:48 13 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:49:48 13 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:49:50 13 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0373lz 05:49:50 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0373lz.x00 05:49:50 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0373lz.x01 05:49:50 13 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0373lz.r in process_file_group 05:49:50 13 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260373.log 05:49:50 13 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:49:50 13 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0373dz 05:49:50 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0373dz.x00 05:49:50 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0373dz.x01 05:49:50 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0373dz.x02 05:49:50 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0373dz.x03 05:49:50 13 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0373dz.r in process_file_group 05:49:51 13 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [373] 05:49:51 13 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [373] 05:49:51 13 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260373) for profiles 05:49:51 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:49:51 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/651) 650 651 to QC_BAD because CT out of water 05:49:51 13 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.079m) 05:49:51 13 Mar 2017 UTC: INFO: QC.py(365): Changed (14/651) 3 4 219 233 236 237 239 240 254 302 304 305 315 ... to QC_PROBABLY_BAD because raw temperature spikes 05:49:51 13 Mar 2017 UTC: INFO: QC.py(377): Changed (1/651) 651 to QC_BAD because raw salinity below bound 05:49:51 13 Mar 2017 UTC: INFO: QC.py(408): Changed (15/651) 219 221 226 233 236 237 239 240 254 268 302 304 ... to QC_PROBABLY_BAD because raw conductivity spikes 05:49:51 13 Mar 2017 UTC: INFO: QC.py(180): Changed (14/651) 3 4 219 233 236 237 239 240 254 302 304 305 315 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:49:51 13 Mar 2017 UTC: INFO: QC.py(180): Changed (4/651) 221 226 268 309 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 05:49:51 13 Mar 2017 UTC: INFO: QC.py(180): Changed (1/651) 650 to QC_BAD because changed raw cond implies changed raw salinity 05:49:51 13 Mar 2017 UTC: INFO: QC.py(365): Changed (14/651) 3 4 219 233 236 237 239 240 254 302 304 305 315 ... to QC_INTERPOLATED because temperature spikes 05:49:51 13 Mar 2017 UTC: INFO: QC.py(377): Changed (1/651) 651 to QC_BAD because salinity below bound 05:49:51 13 Mar 2017 UTC: INFO: QC.py(408): Changed (15/651) 219 221 226 233 236 237 239 240 254 268 302 304 ... to QC_INTERPOLATED because conductivity spikes 05:49:51 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/651) 272:276 to QC_BAD because slow apogee CT flow 05:49:51 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/651) 1:6 to QC_BAD because prior to dive start 05:49:51 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/651) 1:6 272:276 650 651 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:49:51 13 Mar 2017 UTC: INFO: QC.py(180): Changed (13/651) 1:6 272:276 650 651 to QC_BAD because changed corrected salin implies changed speed 05:49:52 13 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:49:52 13 Mar 2017 UTC: INFO: QC.py(180): Changed (12/651) 219 233 236 237 239 240 254 302 304 305 315 649 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 05:49:52 13 Mar 2017 UTC: INFO: QC.py(180): Changed (4/651) 221 226 268 309 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 05:49:52 13 Mar 2017 UTC: INFO: QC.py(180): Changed (12/651) 219 233 236 237 239 240 254 302 304 305 315 649 to QC_INTERPOLATED because changed corrected temp implies changed speed 05:49:52 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.39 cm/s 05:49:52 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.05 cm/s 05:49:52 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:49:52 13 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (196/651) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:49:52 13 Mar 2017 UTC: INFO: QC.py(180): Changed (4/651) 3 4 236 649 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:49:52 13 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (196/651) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:49:52 13 Mar 2017 UTC: INFO: QC.py(180): Changed (4/651) 3 4 236 649 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:49:52 13 Mar 2017 UTC: INFO: QC.py(180): Changed (13/651) 1:6 272:276 650 651 to QC_BAD because changed salinity implies changed optode oxygen 05:49:52 13 Mar 2017 UTC: INFO: QC.py(180): Changed (2/651) 221 226 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 05:49:52 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:49:52 13 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:49:52 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 05:49:52 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 373: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.00% reduction 05:49:52 13 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.373 05:49:52 13 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:49:52 13 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:49:52 13 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:49:53 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 05:49:53 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 05:52:57 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 05:52:58 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 05:52:58 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 05:53:35 13 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:53:35 13 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:53:35 13 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:53:35 13 Mar 2017 UTC /home/sg626/p6260373.log /home/sg626/p6260373.eng /home/sg626/p6260373.asc /home/sg626/p6260373.pro /home/sg626/p6260373.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 05:53:35 13 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:53:35 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:53:35 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:53:35 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:53:35 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:53:35 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:53:35 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:53:35 13 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:53:35 13 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:53:35 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:53:35 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:53:35 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:53:35 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:53:35 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:53:35 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:53:35 13 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:53:35 13 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:53:35 13 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:53:35 13 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:53:35 13 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:53:35 13 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:53:35 13 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:53:35 13 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:53:35 13 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 05:53:35 13 Mar 2017 UTC 09:38:26 13 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 22344 09:38:26 13 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:41:25 13 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 22556 09:41:25 13 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:41:25 13 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:41:25 13 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:41:25 13 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:41:25 13 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170312234125 ] 09:41:25 13 Mar 2017 UTC: INFO: Base.py(1333): PID:22563 09:41:26 13 Mar 2017 UTC: INFO: Base.py(1375): Started processing 09:41:26 13 Mar 2017 UTC 09:41:26 13 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:41:27 13 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:41:27 13 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:41:27 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:41:27 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:374 calls_made:2 call_cycle:0 09:41:27 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:41:27 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:374 calls_made:2 call_cycle:0 09:41:27 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:41:27 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:374 calls_made:2 call_cycle:0 09:41:27 13 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:374 calls_made:2 call_cycle:0 2243.3610 -15759.6140 03/13/17 09:34:19 UTC) to sdrifter@soest.hawaii.edu 09:41:27 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:374 calls_made:2 call_cycle:0 09:41:27 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:41:27 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:374 calls_made:2 call_cycle:0 09:41:27 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:41:27 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:374 calls_made:2 call_cycle:0 09:41:27 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:41:27 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:374 calls_made:2 call_cycle:0 09:41:27 13 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:41:27 13 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:41:32 13 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:41:33 13 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:41:33 13 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:41:33 13 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:41:33 13 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:41:33 13 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:41:36 13 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0374lz 09:41:36 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0374lz.x00 09:41:36 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0374lz.x01 09:41:36 13 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0374lz.r in process_file_group 09:41:36 13 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260374.log 09:41:36 13 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:41:36 13 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0374dz 09:41:36 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0374dz.x00 09:41:36 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0374dz.x01 09:41:36 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0374dz.x02 09:41:36 13 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0374dz.r in process_file_group 09:41:36 13 Mar 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0374dz.r - expected 0x1953853287, generated 0x43f3ec7d 09:41:36 13 Mar 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0374dz.r - expected 0x2626260a, generated 0x75e5 09:41:36 13 Mar 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0374dz.r - skipping 09:41:36 13 Mar 2017 UTC: ERROR: Base.py(272): Could not process sg0374dz - skipping 09:41:36 13 Mar 2017 UTC: WARNING: Base.py(1624): No dives to process 09:41:36 13 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [374] 09:41:36 13 Mar 2017 UTC: INFO: Base.py(1780): No dives found to profile 09:41:36 13 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.374 09:41:36 13 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:41:36 13 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:41:36 13 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:41:36 13 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:41:36 13 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:41:36 13 Mar 2017 UTC: ERROR: Base.py(1960): Dive [374] failed to process completely. The following files were not processed completely: /home/sg626/sg0374dz.r Glider logout not seen - retransmissions from glider possible Consult baselog_170312234125 for details. 09:41:36 13 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:41:36 13 Mar 2017 UTC /home/sg626/p6260374.log 09:41:36 13 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:41:36 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:41:36 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:41:36 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:41:36 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:41:36 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:41:36 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:41:36 13 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:41:36 13 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:41:36 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:41:36 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:41:36 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:41:36 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:41:36 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:41:36 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:41:36 13 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:41:36 13 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:41:36 13 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:41:36 13 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:41:36 13 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:41:36 13 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:41:36 13 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:41:36 13 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:41:36 13 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 09:41:36 13 Mar 2017 UTC 09:43:31 13 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 22797 09:43:31 13 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:45:18 13 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 22909 09:45:18 13 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:45:18 13 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:45:18 13 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:45:18 13 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:45:18 13 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170312234518 ] 09:45:18 13 Mar 2017 UTC: INFO: Base.py(1333): PID:22916 09:45:18 13 Mar 2017 UTC: INFO: Base.py(1375): Started processing 09:45:18 13 Mar 2017 UTC 09:45:18 13 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:45:19 13 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:45:19 13 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:45:19 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:45:19 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:374 calls_made:3 call_cycle:0 09:45:19 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:45:19 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:374 calls_made:3 call_cycle:0 09:45:19 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:45:19 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:374 calls_made:3 call_cycle:0 09:45:19 13 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:374 calls_made:3 call_cycle:0 2243.3610 -15759.6140 03/13/17 09:34:19 UTC) to sdrifter@soest.hawaii.edu 09:45:20 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:374 calls_made:3 call_cycle:0 09:45:20 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:45:20 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:374 calls_made:3 call_cycle:0 09:45:20 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:45:20 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:374 calls_made:3 call_cycle:0 09:45:20 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:45:20 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:374 calls_made:3 call_cycle:0 09:45:20 13 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:45:20 13 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:45:25 13 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:45:26 13 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:45:26 13 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:45:26 13 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:45:26 13 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:45:26 13 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:45:29 13 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:45:29 13 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0374dz 09:45:29 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0374dz.x00 09:45:29 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0374dz.x01 09:45:29 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0374dz.x02 09:45:29 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0374dz.x03 09:45:29 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0374dz.x04 09:45:29 13 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0374dz.r in process_file_group 09:45:29 13 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [374] 09:45:29 13 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [374] 09:45:29 13 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260374) for profiles 09:45:29 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 09:45:29 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/679) 678 679 to QC_BAD because CT out of water 09:45:29 13 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.075m) 09:45:29 13 Mar 2017 UTC: INFO: QC.py(365): Changed (11/679) 3 226 228 232 240 241 286 292 293 295 296 to QC_PROBABLY_BAD because raw temperature spikes 09:45:29 13 Mar 2017 UTC: INFO: QC.py(377): Changed (2/679) 678 679 to QC_BAD because raw salinity below bound 09:45:29 13 Mar 2017 UTC: INFO: QC.py(408): Changed (9/679) 226 240 241 248 268 292 293 295 296 to QC_PROBABLY_BAD because raw conductivity spikes 09:45:29 13 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <231 pt uncorrectable 910.8m SUSPECT weak conductivity anomaly n:-0.28 p:0.27> 09:45:29 13 Mar 2017 UTC: INFO: QC.py(180): Changed (11/679) 3 226 228 232 240 241 286 292 293 295 296 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 09:45:29 13 Mar 2017 UTC: INFO: QC.py(180): Changed (2/679) 248 268 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 09:45:29 13 Mar 2017 UTC: INFO: QC.py(365): Changed (11/679) 3 226 228 232 240 241 286 292 293 295 296 to QC_INTERPOLATED because temperature spikes 09:45:29 13 Mar 2017 UTC: INFO: QC.py(377): Changed (2/679) 678 679 to QC_BAD because salinity below bound 09:45:29 13 Mar 2017 UTC: INFO: QC.py(408): Changed (9/679) 226 240 241 248 268 292 293 295 296 to QC_INTERPOLATED because conductivity spikes 09:45:29 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/679) 274:278 to QC_BAD because slow apogee CT flow 09:45:29 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/679) 1:6 to QC_BAD because prior to dive start 09:45:29 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/679) 1:6 274:278 678 679 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:45:29 13 Mar 2017 UTC: INFO: QC.py(180): Changed (13/679) 1:6 274:278 678 679 to QC_BAD because changed corrected salin implies changed speed 09:45:30 13 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:45:30 13 Mar 2017 UTC: INFO: QC.py(180): Changed (10/679) 226 228 232 240 241 286 292 293 295 296 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 09:45:30 13 Mar 2017 UTC: INFO: QC.py(180): Changed (2/679) 248 268 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 09:45:30 13 Mar 2017 UTC: INFO: QC.py(180): Changed (10/679) 226 228 232 240 241 286 292 293 295 296 to QC_INTERPOLATED because changed corrected temp implies changed speed 09:45:30 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.13 cm/s 09:45:30 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.01 cm/s 09:45:30 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:45:30 13 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (199/679) 155 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:45:30 13 Mar 2017 UTC: INFO: QC.py(180): Changed (5/679) 3 226 241 286 296 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:45:30 13 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (199/679) 155 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 09:45:30 13 Mar 2017 UTC: INFO: QC.py(180): Changed (5/679) 3 226 241 286 296 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:45:30 13 Mar 2017 UTC: INFO: QC.py(180): Changed (13/679) 1:6 274:278 678 679 to QC_BAD because changed salinity implies changed optode oxygen 09:45:30 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:45:30 13 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:45:30 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 09:45:31 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 374: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.91% reduction 09:45:31 13 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.374 09:45:31 13 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:45:31 13 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:45:31 13 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:45:31 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 09:45:31 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 09:48:33 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 09:48:34 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 09:48:34 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 09:49:11 13 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:49:11 13 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:49:11 13 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:49:11 13 Mar 2017 UTC /home/sg626/p6260374.eng /home/sg626/p6260374.asc /home/sg626/p6260374.pro /home/sg626/p6260374.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 09:49:11 13 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:49:11 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:49:11 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:49:11 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:49:11 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:49:11 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:49:11 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:49:11 13 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:49:11 13 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:49:11 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:49:11 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:49:11 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:49:11 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:49:11 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:49:11 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:49:11 13 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:49:11 13 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:49:11 13 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:49:11 13 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:49:11 13 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:49:11 13 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:49:11 13 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:49:11 13 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:49:11 13 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 09:49:11 13 Mar 2017 UTC 13:35:17 13 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 29634 13:35:17 13 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:38:34 13 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 29756 13:38:34 13 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:38:34 13 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:38:34 13 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:38:34 13 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:38:34 13 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170313033833 ] 13:38:34 13 Mar 2017 UTC: INFO: Base.py(1333): PID:29763 13:38:34 13 Mar 2017 UTC: INFO: Base.py(1375): Started processing 13:38:34 13 Mar 2017 UTC 13:38:34 13 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:38:35 13 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:38:35 13 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:38:35 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:38:35 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:375 calls_made:1 call_cycle:0 13:38:35 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:38:35 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:375 calls_made:1 call_cycle:0 13:38:35 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:38:35 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:375 calls_made:1 call_cycle:0 13:38:35 13 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:375 calls_made:1 call_cycle:0 2243.5690 -15800.2970 03/13/17 13:33:01 UTC) to sdrifter@soest.hawaii.edu 13:38:35 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:375 calls_made:1 call_cycle:0 13:38:35 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:38:35 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:375 calls_made:1 call_cycle:0 13:38:35 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:38:35 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:375 calls_made:1 call_cycle:0 13:38:35 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:38:35 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:375 calls_made:1 call_cycle:0 13:38:35 13 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:38:35 13 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:38:41 13 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:38:42 13 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:38:42 13 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:38:42 13 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:38:42 13 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:38:42 13 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:38:44 13 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0375lz 13:38:44 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0375lz.x00 13:38:44 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0375lz.x01 13:38:44 13 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0375lz.r in process_file_group 13:38:44 13 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260375.log 13:38:44 13 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:38:44 13 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0375dz 13:38:44 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0375dz.x00 13:38:44 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0375dz.x01 13:38:44 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0375dz.x02 13:38:44 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0375dz.x03 13:38:44 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0375dz.x04 13:38:44 13 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0375dz.r in process_file_group 13:38:45 13 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [375] 13:38:45 13 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [375] 13:38:45 13 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260375) for profiles 13:38:45 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:38:45 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/707) 706 707 to QC_BAD because CT out of water 13:38:45 13 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.072m) 13:38:45 13 Mar 2017 UTC: INFO: QC.py(365): Changed (8/707) 228 256 276 293 294 307 705 706 to QC_PROBABLY_BAD because raw temperature spikes 13:38:45 13 Mar 2017 UTC: INFO: QC.py(408): Changed (5/707) 228 256 293 294 307 to QC_PROBABLY_BAD because raw conductivity spikes 13:38:45 13 Mar 2017 UTC: INFO: QC.py(180): Changed (8/707) 228 256 276 293 294 307 705 706 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:38:45 13 Mar 2017 UTC: INFO: QC.py(180): Changed (2/707) 706 707 to QC_BAD because changed raw cond implies changed raw salinity 13:38:45 13 Mar 2017 UTC: INFO: QC.py(365): Changed (8/707) 228 256 276 293 294 307 705 706 to QC_INTERPOLATED because temperature spikes 13:38:45 13 Mar 2017 UTC: INFO: QC.py(408): Changed (5/707) 228 256 293 294 307 to QC_INTERPOLATED because conductivity spikes 13:38:45 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/707) 278:282 to QC_BAD because slow apogee CT flow 13:38:45 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/707) 1:6 to QC_BAD because prior to dive start 13:38:45 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/707) 1:6 278:282 706 707 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:38:45 13 Mar 2017 UTC: INFO: QC.py(180): Changed (13/707) 1:6 278:282 706 707 to QC_BAD because changed corrected salin implies changed speed 13:38:46 13 Mar 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 705 13:38:46 13 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:38:46 13 Mar 2017 UTC: INFO: QC.py(180): Changed (7/707) 228 256 276 293 294 307 705 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 13:38:46 13 Mar 2017 UTC: INFO: QC.py(180): Changed (7/707) 228 256 276 293 294 307 705 to QC_INTERPOLATED because changed corrected temp implies changed speed 13:38:46 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.98 cm/s 13:38:46 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.47 cm/s 13:38:46 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:38:46 13 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (200/707) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:38:46 13 Mar 2017 UTC: INFO: QC.py(180): Changed (4/707) 256 276 705 706 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:38:46 13 Mar 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/707) 705 to QC_BAD because slow flow in SBE43 13:38:46 13 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (200/707) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:38:46 13 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/707) 3 to QC_BAD because bad aa4330 oyxgen 13:38:46 13 Mar 2017 UTC: INFO: QC.py(180): Changed (4/707) 256 276 705 706 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:38:46 13 Mar 2017 UTC: INFO: QC.py(180): Changed (12/707) 1 2 4:6 278:282 706 707 to QC_BAD because changed salinity implies changed optode oxygen 13:38:46 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:38:46 13 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:38:46 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:38:46 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 375: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.84% reduction 13:38:47 13 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.375 13:38:47 13 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:38:47 13 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:38:47 13 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:38:47 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:38:47 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:41:53 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 13:41:54 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:41:54 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:42:31 13 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:42:31 13 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:42:31 13 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:42:31 13 Mar 2017 UTC /home/sg626/p6260375.log /home/sg626/p6260375.eng /home/sg626/p6260375.asc /home/sg626/p6260375.pro /home/sg626/p6260375.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:42:31 13 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:42:31 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:42:31 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:42:31 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:42:31 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:42:31 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:42:31 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:42:31 13 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:42:31 13 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:42:31 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:42:31 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:42:31 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:42:31 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:42:31 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:42:31 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:42:31 13 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:42:31 13 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:42:31 13 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:42:31 13 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:42:31 13 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:42:31 13 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:42:31 13 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:42:31 13 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:42:31 13 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 13:42:31 13 Mar 2017 UTC 17:15:39 13 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 3439 17:15:39 13 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:18:44 13 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 3566 17:18:44 13 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:18:44 13 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:18:44 13 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:18:44 13 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:18:44 13 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170313071844 ] 17:18:44 13 Mar 2017 UTC: INFO: Base.py(1333): PID:3573 17:18:44 13 Mar 2017 UTC: INFO: Base.py(1375): Started processing 17:18:44 13 Mar 2017 UTC 17:18:44 13 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:18:46 13 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:18:46 13 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:18:46 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:18:46 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:376 calls_made:1 call_cycle:0 17:18:46 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:18:46 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:376 calls_made:1 call_cycle:0 17:18:46 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:18:46 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:376 calls_made:1 call_cycle:0 17:18:46 13 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:376 calls_made:1 call_cycle:0 2244.0010 -15800.5270 03/13/17 17:13:25 UTC) to sdrifter@soest.hawaii.edu 17:18:46 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:376 calls_made:1 call_cycle:0 17:18:46 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:18:46 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:376 calls_made:1 call_cycle:0 17:18:46 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:18:46 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:376 calls_made:1 call_cycle:0 17:18:46 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:18:46 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:376 calls_made:1 call_cycle:0 17:18:46 13 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:18:46 13 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:18:52 13 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:18:53 13 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:18:53 13 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:18:53 13 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:18:53 13 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:18:53 13 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:18:55 13 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0376lz 17:18:55 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0376lz.x00 17:18:55 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0376lz.x01 17:18:55 13 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0376lz.r in process_file_group 17:18:55 13 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260376.log 17:18:55 13 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:18:55 13 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0376dz 17:18:55 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0376dz.x00 17:18:55 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0376dz.x01 17:18:55 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0376dz.x02 17:18:55 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0376dz.x03 17:18:55 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0376dz.x04 17:18:55 13 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0376dz.r in process_file_group 17:18:56 13 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [376] 17:18:56 13 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [376] 17:18:56 13 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260376) for profiles 17:18:56 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:18:56 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/669) 669 to QC_BAD because CT out of water 17:18:56 13 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.014m) 17:18:56 13 Mar 2017 UTC: INFO: QC.py(365): Changed (22/669) 2 210:212 219 229 233 238 249 254 258:260 263:265 ... to QC_PROBABLY_BAD because raw temperature spikes 17:18:56 13 Mar 2017 UTC: INFO: QC.py(408): Changed (16/669) 210:212 215 219 229 233 238 257:260 275 277 287 ... to QC_PROBABLY_BAD because raw conductivity spikes 17:18:56 13 Mar 2017 UTC: INFO: QC.py(180): Changed (22/669) 2 210:212 219 229 233 238 249 254 258:260 263:265 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:18:56 13 Mar 2017 UTC: INFO: QC.py(180): Changed (2/669) 215 257 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 17:18:56 13 Mar 2017 UTC: INFO: QC.py(180): Changed (1/669) 669 to QC_BAD because changed raw cond implies changed raw salinity 17:18:56 13 Mar 2017 UTC: INFO: QC.py(365): Changed (22/669) 2 210:212 219 229 233 238 249 254 258:260 263:265 ... to QC_INTERPOLATED because temperature spikes 17:18:56 13 Mar 2017 UTC: INFO: QC.py(408): Changed (16/669) 210:212 215 219 229 233 238 257:260 275 277 287 ... to QC_INTERPOLATED because conductivity spikes 17:18:56 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/669) 256:260 to QC_BAD because slow apogee CT flow 17:18:56 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/669) 1:6 to QC_BAD because prior to dive start 17:18:56 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/669) 1:6 256:260 669 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:18:56 13 Mar 2017 UTC: INFO: QC.py(180): Changed (12/669) 1:6 256:260 669 to QC_BAD because changed corrected salin implies changed speed 17:18:56 13 Mar 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 668 17:18:57 13 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:18:57 13 Mar 2017 UTC: INFO: QC.py(180): Changed (18/669) 210:212 219 229 233 238 249 254 263:265 275 277 ... to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 17:18:57 13 Mar 2017 UTC: INFO: QC.py(180): Changed (1/669) 215 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 17:18:57 13 Mar 2017 UTC: INFO: QC.py(180): Changed (18/669) 210:212 219 229 233 238 249 254 263:265 275 277 ... to QC_INTERPOLATED because changed corrected temp implies changed speed 17:18:57 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.40 cm/s 17:18:57 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.16 cm/s 17:18:57 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:18:57 13 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (189/669) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:18:57 13 Mar 2017 UTC: INFO: QC.py(180): Changed (3/669) 2 211 627 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:18:57 13 Mar 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/669) 668 to QC_BAD because slow flow in SBE43 17:18:57 13 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (189/669) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:18:57 13 Mar 2017 UTC: INFO: QC.py(180): Changed (3/669) 2 211 627 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:18:57 13 Mar 2017 UTC: INFO: QC.py(180): Changed (12/669) 1:6 256:260 669 to QC_BAD because changed salinity implies changed optode oxygen 17:18:57 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:18:57 13 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:18:57 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:18:57 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 376: Data set size for profile, binned and kkyy files reduced by 12 points, a 1.79% reduction 17:18:57 13 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.376 17:18:57 13 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:18:57 13 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:18:57 13 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:18:57 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:18:57 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:22:02 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 17:22:03 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:22:03 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:22:40 13 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:22:40 13 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:22:40 13 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:22:40 13 Mar 2017 UTC /home/sg626/p6260376.log /home/sg626/p6260376.eng /home/sg626/p6260376.asc /home/sg626/p6260376.pro /home/sg626/p6260376.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:22:40 13 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:22:40 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:22:40 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:22:40 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:22:40 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:22:40 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:22:40 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:22:40 13 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:22:40 13 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:22:40 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:22:40 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:22:40 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:22:40 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:22:40 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:22:40 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:22:40 13 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:22:40 13 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:22:40 13 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:22:40 13 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:22:40 13 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:22:40 13 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:22:40 13 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:22:40 13 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:22:40 13 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 17:22:40 13 Mar 2017 UTC 21:11:27 13 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9604 21:11:27 13 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:14:43 13 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9733 21:14:43 13 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:14:43 13 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:14:43 13 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:14:43 13 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:14:43 13 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170313111442 ] 21:14:43 13 Mar 2017 UTC: INFO: Base.py(1333): PID:9741 21:14:43 13 Mar 2017 UTC: INFO: Base.py(1375): Started processing 21:14:43 13 Mar 2017 UTC 21:14:43 13 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:14:44 13 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:14:44 13 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:14:44 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:14:44 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:377 calls_made:1 call_cycle:0 21:14:44 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:14:44 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:377 calls_made:1 call_cycle:0 21:14:44 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:14:44 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:377 calls_made:1 call_cycle:0 21:14:44 13 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:377 calls_made:1 call_cycle:0 2244.4250 -15800.1740 03/13/17 21:09:01 UTC) to sdrifter@soest.hawaii.edu 21:14:44 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:377 calls_made:1 call_cycle:0 21:14:44 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:14:44 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:377 calls_made:1 call_cycle:0 21:14:44 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:14:44 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:377 calls_made:1 call_cycle:0 21:14:44 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:14:44 13 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:377 calls_made:1 call_cycle:0 21:14:44 13 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:14:44 13 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:14:50 13 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:14:51 13 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:14:51 13 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:14:51 13 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:14:51 13 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:14:51 13 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:14:53 13 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0377lz 21:14:53 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0377lz.x00 21:14:53 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0377lz.x01 21:14:53 13 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0377lz.r in process_file_group 21:14:53 13 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260377.log 21:14:53 13 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:14:53 13 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0377dz 21:14:53 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0377dz.x00 21:14:53 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0377dz.x01 21:14:53 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0377dz.x02 21:14:53 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0377dz.x03 21:14:53 13 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0377dz.x04 21:14:53 13 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0377dz.r in process_file_group 21:14:54 13 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [377] 21:14:54 13 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [377] 21:14:54 13 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260377) for profiles 21:14:54 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:14:54 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/674) 674 to QC_BAD because CT out of water 21:14:54 13 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.058m) 21:14:54 13 Mar 2017 UTC: INFO: QC.py(365): Changed (5/674) 241 275 278 296 305 to QC_PROBABLY_BAD because raw temperature spikes 21:14:54 13 Mar 2017 UTC: INFO: QC.py(377): Changed (1/674) 674 to QC_BAD because raw salinity below bound 21:14:54 13 Mar 2017 UTC: INFO: QC.py(408): Changed (4/674) 230 241 275 307 to QC_PROBABLY_BAD because raw conductivity spikes 21:14:54 13 Mar 2017 UTC: INFO: QC.py(180): Changed (5/674) 241 275 278 296 305 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:14:54 13 Mar 2017 UTC: INFO: QC.py(180): Changed (2/674) 230 307 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 21:14:54 13 Mar 2017 UTC: INFO: QC.py(365): Changed (5/674) 241 275 278 296 305 to QC_INTERPOLATED because temperature spikes 21:14:54 13 Mar 2017 UTC: INFO: QC.py(377): Changed (1/674) 674 to QC_BAD because salinity below bound 21:14:54 13 Mar 2017 UTC: INFO: QC.py(408): Changed (4/674) 230 241 275 307 to QC_INTERPOLATED because conductivity spikes 21:14:54 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/674) 276:280 to QC_BAD because slow apogee CT flow 21:14:54 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/674) 1:6 to QC_BAD because prior to dive start 21:14:54 13 Mar 2017 UTC: INFO: QC.py(488): Changed (1/674) 275 to QC_PROBABLY_BAD because bad interpolation anchors 21:14:54 13 Mar 2017 UTC: INFO: QC.py(489): SUGGESTION: 377 bad_conductivity data_points in_between 273 275 % bad interpolation anchors 21:14:54 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/674) 1:6 276:280 674 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:14:54 13 Mar 2017 UTC: INFO: QC.py(180): Changed (12/674) 1:6 276:280 674 to QC_BAD because changed corrected salin implies changed speed 21:14:55 13 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:14:55 13 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 377 interp_salinity data_points in_between 439 443 % suspect thermal-inertia points 441 21:14:55 13 Mar 2017 UTC: INFO: QC.py(180): Changed (4/674) 241 275 296 305 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 21:14:55 13 Mar 2017 UTC: INFO: QC.py(180): Changed (1/674) 275 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 21:14:55 13 Mar 2017 UTC: INFO: QC.py(180): Changed (2/674) 230 307 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 21:14:55 13 Mar 2017 UTC: INFO: QC.py(180): Changed (4/674) 241 275 296 305 to QC_INTERPOLATED because changed corrected temp implies changed speed 21:14:55 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.74 cm/s 21:14:55 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.72 cm/s 21:14:55 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:14:55 13 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (205/674) 155 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:14:55 13 Mar 2017 UTC: INFO: QC.py(180): Changed (2/674) 241 296 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:14:55 13 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (205/674) 155 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:14:55 13 Mar 2017 UTC: INFO: QC.py(180): Changed (2/674) 241 296 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:14:55 13 Mar 2017 UTC: INFO: QC.py(180): Changed (12/674) 1:6 276:280 674 to QC_BAD because changed salinity implies changed optode oxygen 21:14:55 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:14:55 13 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:14:55 13 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:14:55 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 377: Data set size for profile, binned and kkyy files reduced by 12 points, a 1.78% reduction 21:14:55 13 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.377 21:14:55 13 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:14:55 13 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:14:55 13 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:14:56 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:14:56 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 21:18:02 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 21:18:03 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 21:18:03 13 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 21:18:40 13 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:18:40 13 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:18:40 13 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:18:40 13 Mar 2017 UTC /home/sg626/p6260377.log /home/sg626/p6260377.eng /home/sg626/p6260377.asc /home/sg626/p6260377.pro /home/sg626/p6260377.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 21:18:40 13 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:18:40 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:18:40 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:18:40 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:18:40 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:18:40 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:18:40 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:18:40 13 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:18:40 13 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:18:40 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:18:40 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:18:40 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:18:40 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:18:40 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:18:40 13 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:18:40 13 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:18:40 13 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:18:40 13 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:18:40 13 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:18:40 13 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:18:40 13 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:18:40 13 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:18:40 13 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:18:40 13 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 21:18:40 13 Mar 2017 UTC 00:50:17 14 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 15365 00:50:17 14 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:53:17 14 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 15493 00:53:17 14 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:53:17 14 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:53:17 14 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:53:17 14 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:53:17 14 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170313145316 ] 00:53:17 14 Mar 2017 UTC: INFO: Base.py(1333): PID:15501 00:53:17 14 Mar 2017 UTC: INFO: Base.py(1375): Started processing 00:53:17 14 Mar 2017 UTC 00:53:17 14 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:53:18 14 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:53:18 14 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:53:18 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:53:18 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:378 calls_made:1 call_cycle:0 00:53:18 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:53:18 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:378 calls_made:1 call_cycle:0 00:53:18 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:53:18 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:378 calls_made:1 call_cycle:0 00:53:18 14 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:378 calls_made:1 call_cycle:0 2244.3970 -15759.1500 03/14/17 00:48:01 UTC) to sdrifter@soest.hawaii.edu 00:53:18 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:378 calls_made:1 call_cycle:0 00:53:18 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:53:18 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:378 calls_made:1 call_cycle:0 00:53:18 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:53:18 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:378 calls_made:1 call_cycle:0 00:53:18 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:53:18 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:378 calls_made:1 call_cycle:0 00:53:18 14 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:53:18 14 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:53:24 14 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:53:25 14 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:53:25 14 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:53:25 14 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:53:25 14 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:53:25 14 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:53:27 14 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0378lz 00:53:27 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0378lz.x00 00:53:27 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0378lz.x01 00:53:27 14 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0378lz.r in process_file_group 00:53:27 14 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260378.log 00:53:27 14 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:53:27 14 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0378dz 00:53:27 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0378dz.x00 00:53:27 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0378dz.x01 00:53:27 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0378dz.x02 00:53:27 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0378dz.x03 00:53:27 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0378dz.x04 00:53:27 14 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0378dz.r in process_file_group 00:53:28 14 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [378] 00:53:28 14 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [378] 00:53:28 14 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260378) for profiles 00:53:28 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 00:53:28 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/660) 660 to QC_BAD because CT out of water 00:53:28 14 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.113m) 00:53:28 14 Mar 2017 UTC: INFO: QC.py(365): Changed (10/660) 2 225 236 246 269 282 296 522 657 659 to QC_PROBABLY_BAD because raw temperature spikes 00:53:28 14 Mar 2017 UTC: INFO: QC.py(408): Changed (7/660) 225 226 236 269 282 296 594 to QC_PROBABLY_BAD because raw conductivity spikes 00:53:28 14 Mar 2017 UTC: INFO: QC.py(180): Changed (10/660) 2 225 236 246 269 282 296 522 657 659 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:53:28 14 Mar 2017 UTC: INFO: QC.py(180): Changed (2/660) 226 594 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 00:53:28 14 Mar 2017 UTC: INFO: QC.py(180): Changed (1/660) 660 to QC_BAD because changed raw cond implies changed raw salinity 00:53:28 14 Mar 2017 UTC: INFO: QC.py(365): Changed (10/660) 2 225 236 246 269 282 296 522 657 659 to QC_INTERPOLATED because temperature spikes 00:53:28 14 Mar 2017 UTC: INFO: QC.py(408): Changed (7/660) 225 226 236 269 282 296 594 to QC_INTERPOLATED because conductivity spikes 00:53:28 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/660) 260:264 to QC_BAD because slow apogee CT flow 00:53:28 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/660) 1:6 to QC_BAD because prior to dive start 00:53:28 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/660) 1:6 260:264 660 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:53:28 14 Mar 2017 UTC: INFO: QC.py(180): Changed (12/660) 1:6 260:264 660 to QC_BAD because changed corrected salin implies changed speed 00:53:29 14 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:53:29 14 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 378 interp_salinity data_points in_between 348 370 % suspect thermal-inertia points 359 360 00:53:29 14 Mar 2017 UTC: INFO: QC.py(180): Changed (9/660) 225 236 246 269 282 296 522 657 659 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 00:53:29 14 Mar 2017 UTC: INFO: QC.py(180): Changed (2/660) 226 594 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 00:53:29 14 Mar 2017 UTC: INFO: QC.py(180): Changed (9/660) 225 236 246 269 282 296 522 657 659 to QC_INTERPOLATED because changed corrected temp implies changed speed 00:53:29 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.52 cm/s 00:53:29 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.35 cm/s 00:53:29 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:53:29 14 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (186/660) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:53:29 14 Mar 2017 UTC: INFO: QC.py(180): Changed (7/660) 2 236 246 296 522 657 659 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:53:29 14 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (186/660) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 00:53:29 14 Mar 2017 UTC: INFO: QC.py(180): Changed (7/660) 2 236 246 296 522 657 659 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:53:29 14 Mar 2017 UTC: INFO: QC.py(180): Changed (12/660) 1:6 260:264 660 to QC_BAD because changed salinity implies changed optode oxygen 00:53:29 14 Mar 2017 UTC: INFO: QC.py(180): Changed (2/660) 226 594 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 00:53:29 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:53:29 14 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:53:29 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 00:53:29 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 378: Data set size for profile, binned and kkyy files reduced by 12 points, a 1.82% reduction 00:53:29 14 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.378 00:53:29 14 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:53:29 14 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:53:29 14 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:53:30 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 00:53:30 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 00:56:36 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 00:56:37 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 00:56:37 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 00:57:14 14 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:57:14 14 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:57:14 14 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:57:14 14 Mar 2017 UTC /home/sg626/p6260378.log /home/sg626/p6260378.eng /home/sg626/p6260378.asc /home/sg626/p6260378.pro /home/sg626/p6260378.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 00:57:14 14 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:57:14 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:57:14 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:57:14 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:57:14 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:57:14 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:57:14 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:57:14 14 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:57:14 14 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:57:14 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:57:14 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:57:14 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:57:14 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:57:14 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:57:14 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:57:14 14 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:57:14 14 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:57:14 14 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:57:14 14 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:57:14 14 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:57:14 14 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:57:14 14 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:57:14 14 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:57:14 14 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 00:57:14 14 Mar 2017 UTC 04:32:11 14 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 21801 04:32:12 14 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:35:10 14 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 21923 04:35:10 14 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:35:10 14 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:35:10 14 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:35:10 14 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:35:10 14 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170313183509 ] 04:35:10 14 Mar 2017 UTC: INFO: Base.py(1333): PID:21931 04:35:10 14 Mar 2017 UTC: INFO: Base.py(1375): Started processing 04:35:10 14 Mar 2017 UTC 04:35:10 14 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:35:11 14 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:35:11 14 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:35:11 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:35:11 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:379 calls_made:1 call_cycle:0 04:35:11 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:35:11 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:379 calls_made:1 call_cycle:0 04:35:11 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:35:11 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:379 calls_made:1 call_cycle:0 04:35:11 14 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:379 calls_made:1 call_cycle:0 2243.7600 -15800.3710 03/14/17 04:29:55 UTC) to sdrifter@soest.hawaii.edu 04:35:11 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:379 calls_made:1 call_cycle:0 04:35:11 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:35:11 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:379 calls_made:1 call_cycle:0 04:35:11 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:35:11 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:379 calls_made:1 call_cycle:0 04:35:11 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:35:11 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:379 calls_made:1 call_cycle:0 04:35:11 14 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:35:11 14 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:35:17 14 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:35:18 14 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:35:18 14 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:35:18 14 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:35:18 14 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:35:18 14 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:35:20 14 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0379lz 04:35:20 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0379lz.x00 04:35:20 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0379lz.x01 04:35:20 14 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0379lz.r in process_file_group 04:35:20 14 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260379.log 04:35:20 14 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:35:20 14 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0379dz 04:35:20 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0379dz.x00 04:35:20 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0379dz.x01 04:35:20 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0379dz.x02 04:35:20 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0379dz.x03 04:35:20 14 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0379dz.r in process_file_group 04:35:20 14 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [379] 04:35:20 14 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [379] 04:35:21 14 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260379) for profiles 04:35:21 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 04:35:21 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/645) 643:645 to QC_BAD because CT out of water 04:35:21 14 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.062m) 04:35:21 14 Mar 2017 UTC: INFO: QC.py(365): Changed (13/645) 2 211:213 219 222 229 230 233 280 291 643 644 to QC_PROBABLY_BAD because raw temperature spikes 04:35:21 14 Mar 2017 UTC: INFO: QC.py(377): Changed (2/645) 643 645 to QC_BAD because raw salinity below bound 04:35:21 14 Mar 2017 UTC: INFO: QC.py(408): Changed (11/645) 213 219 222 229:233 267 274 291 to QC_PROBABLY_BAD because raw conductivity spikes 04:35:21 14 Mar 2017 UTC: INFO: QC.py(180): Changed (12/645) 2 211:213 219 222 229 230 233 280 291 644 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:35:21 14 Mar 2017 UTC: INFO: QC.py(180): Changed (4/645) 231 232 267 274 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 04:35:21 14 Mar 2017 UTC: INFO: QC.py(180): Changed (1/645) 644 to QC_BAD because changed raw cond implies changed raw salinity 04:35:21 14 Mar 2017 UTC: INFO: QC.py(365): Changed (13/645) 2 211:213 219 222 229 230 233 280 291 643 644 to QC_INTERPOLATED because temperature spikes 04:35:21 14 Mar 2017 UTC: INFO: QC.py(377): Changed (2/645) 643 645 to QC_BAD because salinity below bound 04:35:21 14 Mar 2017 UTC: INFO: QC.py(408): Changed (11/645) 213 219 222 229:233 267 274 291 to QC_INTERPOLATED because conductivity spikes 04:35:21 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/645) 252:256 to QC_BAD because slow apogee CT flow 04:35:21 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/645) 1:6 to QC_BAD because prior to dive start 04:35:21 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/645) 1:6 252:256 643:645 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:35:21 14 Mar 2017 UTC: INFO: QC.py(180): Changed (14/645) 1:6 252:256 643:645 to QC_BAD because changed corrected salin implies changed speed 04:35:21 14 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:35:21 14 Mar 2017 UTC: INFO: QC.py(180): Changed (10/645) 211:213 219 222 229 230 233 280 291 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 04:35:21 14 Mar 2017 UTC: INFO: QC.py(180): Changed (4/645) 231 232 267 274 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 04:35:21 14 Mar 2017 UTC: INFO: QC.py(180): Changed (10/645) 211:213 219 222 229 230 233 280 291 to QC_INTERPOLATED because changed corrected temp implies changed speed 04:35:21 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.98 cm/s 04:35:21 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.51 cm/s 04:35:21 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:35:21 14 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (193/645) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:35:21 14 Mar 2017 UTC: INFO: QC.py(180): Changed (5/645) 2 211 291 643 644 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:35:21 14 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (193/645) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 04:35:21 14 Mar 2017 UTC: INFO: QC.py(180): Changed (5/645) 2 211 291 643 644 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:35:21 14 Mar 2017 UTC: INFO: QC.py(180): Changed (14/645) 1:6 252:256 643:645 to QC_BAD because changed salinity implies changed optode oxygen 04:35:21 14 Mar 2017 UTC: INFO: QC.py(180): Changed (1/645) 231 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 04:35:21 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:35:21 14 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:35:21 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 04:35:22 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 379: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.17% reduction 04:35:22 14 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.379 04:35:22 14 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:35:22 14 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:35:22 14 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:35:22 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 04:35:22 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 04:38:30 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 04:38:31 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 04:38:31 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 04:39:08 14 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:39:08 14 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:39:08 14 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:39:08 14 Mar 2017 UTC /home/sg626/p6260379.log /home/sg626/p6260379.eng /home/sg626/p6260379.asc /home/sg626/p6260379.pro /home/sg626/p6260379.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 04:39:08 14 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:39:08 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:39:08 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:39:08 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:39:08 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:39:08 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:39:08 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:39:08 14 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:39:08 14 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:39:08 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:39:08 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:39:08 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:39:08 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:39:08 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:39:08 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:39:08 14 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:39:08 14 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:39:08 14 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:39:08 14 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:39:08 14 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:39:08 14 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:39:08 14 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:39:08 14 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:39:08 14 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 04:39:08 14 Mar 2017 UTC 08:30:10 14 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 28120 08:30:10 14 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:34:17 14 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 28274 08:34:17 14 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:34:17 14 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:34:17 14 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:34:17 14 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:34:17 14 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170313223417 ] 08:34:17 14 Mar 2017 UTC: INFO: Base.py(1333): PID:28281 08:34:17 14 Mar 2017 UTC: INFO: Base.py(1375): Started processing 08:34:17 14 Mar 2017 UTC 08:34:17 14 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:34:18 14 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:34:18 14 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:34:18 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:34:18 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:380 calls_made:1 call_cycle:0 08:34:18 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:34:18 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:380 calls_made:1 call_cycle:0 08:34:18 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:34:18 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:380 calls_made:1 call_cycle:0 08:34:18 14 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:380 calls_made:1 call_cycle:0 2244.0560 -15759.6520 03/14/17 08:28:01 UTC) to sdrifter@soest.hawaii.edu 08:34:19 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:380 calls_made:1 call_cycle:0 08:34:19 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:34:19 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:380 calls_made:1 call_cycle:0 08:34:19 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:34:19 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:380 calls_made:1 call_cycle:0 08:34:19 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:34:19 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:380 calls_made:1 call_cycle:0 08:34:19 14 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:34:19 14 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:34:25 14 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:34:26 14 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:34:26 14 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:34:26 14 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:34:26 14 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:34:26 14 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:34:28 14 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0380lz 08:34:28 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0380lz.x00 08:34:28 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0380lz.x01 08:34:28 14 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0380lz.r in process_file_group 08:34:28 14 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260380.log 08:34:28 14 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:34:28 14 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0380dz 08:34:28 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0380dz.x00 08:34:28 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0380dz.x01 08:34:28 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0380dz.x02 08:34:28 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0380dz.x03 08:34:28 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0380dz.x04 08:34:28 14 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0380dz.r in process_file_group 08:34:28 14 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [380] 08:34:28 14 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [380] 08:34:29 14 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260380) for profiles 08:34:29 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:34:29 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/725) 724 725 to QC_BAD because CT out of water 08:34:29 14 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.118m) 08:34:29 14 Mar 2017 UTC: INFO: QC.py(365): Changed (20/725) 2:4 219:221 224 229 230 240 242 246 250 255 271 ... to QC_PROBABLY_BAD because raw temperature spikes 08:34:29 14 Mar 2017 UTC: INFO: QC.py(377): Changed (1/725) 724 to QC_BAD because raw salinity below bound 08:34:29 14 Mar 2017 UTC: INFO: QC.py(408): Changed (10/725) 219 224 229 230 240 242 246 250 255 308 to QC_PROBABLY_BAD because raw conductivity spikes 08:34:29 14 Mar 2017 UTC: INFO: QC.py(180): Changed (19/725) 2:4 219:221 224 229 230 240 242 246 250 255 271 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:34:29 14 Mar 2017 UTC: INFO: QC.py(180): Changed (1/725) 725 to QC_BAD because changed raw cond implies changed raw salinity 08:34:29 14 Mar 2017 UTC: INFO: QC.py(365): Changed (20/725) 2:4 219:221 224 229 230 240 242 246 250 255 271 ... to QC_INTERPOLATED because temperature spikes 08:34:29 14 Mar 2017 UTC: INFO: QC.py(377): Changed (1/725) 724 to QC_BAD because salinity below bound 08:34:29 14 Mar 2017 UTC: INFO: QC.py(408): Changed (10/725) 219 224 229 230 240 242 246 250 255 308 to QC_INTERPOLATED because conductivity spikes 08:34:29 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/725) 272:276 to QC_BAD because slow apogee CT flow 08:34:29 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/725) 1:6 to QC_BAD because prior to dive start 08:34:29 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/725) 1:6 272:276 724 725 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:34:29 14 Mar 2017 UTC: INFO: QC.py(180): Changed (13/725) 1:6 272:276 724 725 to QC_BAD because changed corrected salin implies changed speed 08:34:30 14 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:34:30 14 Mar 2017 UTC: INFO: QC.py(180): Changed (16/725) 219:221 224 229 230 240 242 246 250 255 271 285 ... to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 08:34:30 14 Mar 2017 UTC: INFO: QC.py(180): Changed (16/725) 219:221 224 229 230 240 242 246 250 255 271 285 ... to QC_INTERPOLATED because changed corrected temp implies changed speed 08:34:30 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.10 cm/s 08:34:30 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.30 cm/s 08:34:30 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:34:30 14 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (200/725) 153:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:34:30 14 Mar 2017 UTC: INFO: QC.py(180): Changed (8/725) 2:4 221 246 271 291 724 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:34:30 14 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (200/725) 153:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:34:30 14 Mar 2017 UTC: INFO: QC.py(180): Changed (8/725) 2:4 221 246 271 291 724 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:34:30 14 Mar 2017 UTC: INFO: QC.py(180): Changed (13/725) 1:6 272:276 724 725 to QC_BAD because changed salinity implies changed optode oxygen 08:34:30 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:34:30 14 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:34:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 08:34:30 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 380: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.79% reduction 08:34:30 14 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.380 08:34:30 14 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:34:30 14 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:34:30 14 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:34:30 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 08:34:30 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 08:37:37 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 08:37:38 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 08:37:38 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 08:38:16 14 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:38:16 14 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:38:16 14 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:38:16 14 Mar 2017 UTC /home/sg626/p6260380.log /home/sg626/p6260380.eng /home/sg626/p6260380.asc /home/sg626/p6260380.pro /home/sg626/p6260380.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 08:38:16 14 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:38:16 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:38:16 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:38:16 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:38:16 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:38:16 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:38:16 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:38:16 14 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:38:16 14 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:38:16 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:38:16 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:38:16 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:38:16 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:38:16 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:38:16 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:38:16 14 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:38:16 14 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:38:16 14 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:38:16 14 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:38:16 14 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:38:16 14 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:38:16 14 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:38:16 14 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:38:16 14 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 08:38:16 14 Mar 2017 UTC 12:15:19 14 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 2043 12:15:19 14 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:18:23 14 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 2166 12:18:23 14 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:18:23 14 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:18:23 14 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:18:23 14 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:18:23 14 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170314021823 ] 12:18:23 14 Mar 2017 UTC: INFO: Base.py(1333): PID:2174 12:18:23 14 Mar 2017 UTC: INFO: Base.py(1375): Started processing 12:18:23 14 Mar 2017 UTC 12:18:23 14 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:18:24 14 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:18:24 14 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:18:24 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:18:24 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:381 calls_made:1 call_cycle:0 12:18:24 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:18:24 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:381 calls_made:1 call_cycle:0 12:18:24 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:18:24 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:381 calls_made:1 call_cycle:0 12:18:24 14 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:381 calls_made:1 call_cycle:0 2243.7880 -15800.5730 03/14/17 12:13:03 UTC) to sdrifter@soest.hawaii.edu 12:18:24 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:381 calls_made:1 call_cycle:0 12:18:24 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:18:24 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:381 calls_made:1 call_cycle:0 12:18:24 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:18:24 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:381 calls_made:1 call_cycle:0 12:18:24 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:18:24 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:381 calls_made:1 call_cycle:0 12:18:24 14 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:18:24 14 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:18:30 14 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:18:31 14 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:18:31 14 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:18:31 14 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:18:31 14 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:18:31 14 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:18:34 14 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0381lz 12:18:34 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0381lz.x00 12:18:34 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0381lz.x01 12:18:34 14 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0381lz.r in process_file_group 12:18:34 14 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260381.log 12:18:34 14 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:18:34 14 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0381dz 12:18:34 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0381dz.x00 12:18:34 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0381dz.x01 12:18:34 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0381dz.x02 12:18:34 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0381dz.x03 12:18:34 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0381dz.x04 12:18:34 14 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0381dz.r in process_file_group 12:18:34 14 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [381] 12:18:34 14 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [381] 12:18:34 14 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260381) for profiles 12:18:34 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 12:18:35 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/674) 672:674 to QC_BAD because CT out of water 12:18:35 14 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.102m) 12:18:35 14 Mar 2017 UTC: INFO: QC.py(365): Changed (5/674) 3 252 280 289 673 to QC_PROBABLY_BAD because raw temperature spikes 12:18:35 14 Mar 2017 UTC: INFO: QC.py(377): Changed (2/674) 673 674 to QC_BAD because raw salinity below bound 12:18:35 14 Mar 2017 UTC: INFO: QC.py(408): Changed (4/674) 244 252 263 280 to QC_PROBABLY_BAD because raw conductivity spikes 12:18:35 14 Mar 2017 UTC: INFO: QC.py(180): Changed (4/674) 3 252 280 289 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 12:18:35 14 Mar 2017 UTC: INFO: QC.py(180): Changed (2/674) 244 263 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 12:18:35 14 Mar 2017 UTC: INFO: QC.py(180): Changed (1/674) 672 to QC_BAD because changed raw cond implies changed raw salinity 12:18:35 14 Mar 2017 UTC: INFO: QC.py(365): Changed (5/674) 3 252 280 289 673 to QC_INTERPOLATED because temperature spikes 12:18:35 14 Mar 2017 UTC: INFO: QC.py(377): Changed (2/674) 673 674 to QC_BAD because salinity below bound 12:18:35 14 Mar 2017 UTC: INFO: QC.py(408): Changed (4/674) 244 252 263 280 to QC_INTERPOLATED because conductivity spikes 12:18:35 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/674) 267:271 to QC_BAD because slow apogee CT flow 12:18:35 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/674) 1:6 to QC_BAD because prior to dive start 12:18:35 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/674) 1:6 267:271 672:674 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:18:35 14 Mar 2017 UTC: INFO: QC.py(180): Changed (14/674) 1:6 267:271 672:674 to QC_BAD because changed corrected salin implies changed speed 12:18:35 14 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:18:35 14 Mar 2017 UTC: INFO: QC.py(180): Changed (3/674) 252 280 289 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 12:18:35 14 Mar 2017 UTC: INFO: QC.py(180): Changed (2/674) 244 263 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 12:18:35 14 Mar 2017 UTC: INFO: QC.py(180): Changed (3/674) 252 280 289 to QC_INTERPOLATED because changed corrected temp implies changed speed 12:18:35 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.09 cm/s 12:18:35 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.36 cm/s 12:18:35 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:18:35 14 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (191/674) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:18:35 14 Mar 2017 UTC: INFO: QC.py(180): Changed (2/674) 3 673 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 12:18:35 14 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (191/674) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 12:18:35 14 Mar 2017 UTC: INFO: QC.py(180): Changed (2/674) 3 673 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 12:18:35 14 Mar 2017 UTC: INFO: QC.py(180): Changed (14/674) 1:6 267:271 672:674 to QC_BAD because changed salinity implies changed optode oxygen 12:18:35 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:18:35 14 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:18:35 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 12:18:36 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 381: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.08% reduction 12:18:36 14 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.381 12:18:36 14 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:18:36 14 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:18:36 14 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:18:36 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 12:18:36 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 12:21:46 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 12:21:47 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 12:21:47 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 12:22:24 14 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:22:24 14 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:22:24 14 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 12:22:24 14 Mar 2017 UTC /home/sg626/p6260381.log /home/sg626/p6260381.eng /home/sg626/p6260381.asc /home/sg626/p6260381.pro /home/sg626/p6260381.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 12:22:24 14 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:22:24 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:22:24 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:22:24 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:22:24 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:22:24 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:22:24 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:22:24 14 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:22:24 14 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:22:24 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:22:24 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:22:24 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:22:24 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:22:24 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:22:24 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:22:24 14 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:22:24 14 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 12:22:24 14 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 12:22:24 14 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 12:22:24 14 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 12:22:24 14 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:22:24 14 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:22:24 14 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:22:24 14 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 12:22:24 14 Mar 2017 UTC 16:05:47 14 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 8624 16:05:47 14 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:08:54 14 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 8690 16:08:54 14 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:08:54 14 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:08:54 14 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:08:54 14 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:08:54 14 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170314060853 ] 16:08:54 14 Mar 2017 UTC: INFO: Base.py(1333): PID:8698 16:08:54 14 Mar 2017 UTC: INFO: Base.py(1375): Started processing 16:08:54 14 Mar 2017 UTC 16:08:54 14 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:08:55 14 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:08:55 14 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:08:55 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:08:55 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:382 calls_made:1 call_cycle:0 16:08:55 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:08:55 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:382 calls_made:1 call_cycle:0 16:08:55 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:08:55 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:382 calls_made:1 call_cycle:0 16:08:55 14 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:382 calls_made:1 call_cycle:0 2243.8570 -15759.7480 03/14/17 16:03:18 UTC) to sdrifter@soest.hawaii.edu 16:08:55 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:382 calls_made:1 call_cycle:0 16:08:55 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:08:55 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:382 calls_made:1 call_cycle:0 16:08:55 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:08:55 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:382 calls_made:1 call_cycle:0 16:08:55 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:08:55 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:382 calls_made:1 call_cycle:0 16:08:55 14 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:08:55 14 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:09:01 14 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:09:02 14 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:09:02 14 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:09:02 14 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:09:02 14 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:09:02 14 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:09:04 14 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0382lz 16:09:04 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0382lz.x00 16:09:04 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0382lz.x01 16:09:04 14 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0382lz.r in process_file_group 16:09:04 14 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260382.log 16:09:04 14 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:09:04 14 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0382dz 16:09:04 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0382dz.x00 16:09:04 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0382dz.x01 16:09:04 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0382dz.x02 16:09:04 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0382dz.x03 16:09:04 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0382dz.x04 16:09:04 14 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0382dz.r in process_file_group 16:09:05 14 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [382] 16:09:05 14 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [382] 16:09:05 14 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260382) for profiles 16:09:05 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:09:05 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/717) 717 to QC_BAD because CT out of water 16:09:05 14 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.048m) 16:09:05 14 Mar 2017 UTC: INFO: QC.py(365): Changed (4/717) 255 256 280 282 to QC_PROBABLY_BAD because raw temperature spikes 16:09:05 14 Mar 2017 UTC: INFO: QC.py(408): Changed (5/717) 237 255 256 280 282 to QC_PROBABLY_BAD because raw conductivity spikes 16:09:05 14 Mar 2017 UTC: INFO: QC.py(180): Changed (4/717) 255 256 280 282 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:09:05 14 Mar 2017 UTC: INFO: QC.py(180): Changed (1/717) 237 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 16:09:05 14 Mar 2017 UTC: INFO: QC.py(180): Changed (1/717) 717 to QC_BAD because changed raw cond implies changed raw salinity 16:09:05 14 Mar 2017 UTC: INFO: QC.py(365): Changed (4/717) 255 256 280 282 to QC_INTERPOLATED because temperature spikes 16:09:05 14 Mar 2017 UTC: INFO: QC.py(408): Changed (5/717) 237 255 256 280 282 to QC_INTERPOLATED because conductivity spikes 16:09:05 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/717) 265:269 to QC_BAD because slow apogee CT flow 16:09:05 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/717) 1:6 to QC_BAD because prior to dive start 16:09:05 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/717) 1:6 265:269 717 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:09:05 14 Mar 2017 UTC: INFO: QC.py(180): Changed (12/717) 1:6 265:269 717 to QC_BAD because changed corrected salin implies changed speed 16:09:06 14 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:09:06 14 Mar 2017 UTC: INFO: QC.py(180): Changed (4/717) 255 256 280 282 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 16:09:06 14 Mar 2017 UTC: INFO: QC.py(180): Changed (1/717) 237 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 16:09:06 14 Mar 2017 UTC: INFO: QC.py(180): Changed (4/717) 255 256 280 282 to QC_INTERPOLATED because changed corrected temp implies changed speed 16:09:06 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.66 cm/s 16:09:06 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.41 cm/s 16:09:06 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:09:06 14 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (195/717) 153:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:09:06 14 Mar 2017 UTC: INFO: QC.py(180): Changed (1/717) 256 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:09:06 14 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (195/717) 153:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:09:06 14 Mar 2017 UTC: INFO: QC.py(180): Changed (1/717) 256 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:09:06 14 Mar 2017 UTC: INFO: QC.py(180): Changed (12/717) 1:6 265:269 717 to QC_BAD because changed salinity implies changed optode oxygen 16:09:06 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:09:06 14 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:09:06 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:09:06 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 382: Data set size for profile, binned and kkyy files reduced by 12 points, a 1.67% reduction 16:09:06 14 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.382 16:09:06 14 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:09:06 14 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:09:06 14 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:09:07 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:09:07 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:12:16 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 16:12:17 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:12:17 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:12:55 14 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:12:55 14 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:12:55 14 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:12:55 14 Mar 2017 UTC /home/sg626/p6260382.log /home/sg626/p6260382.eng /home/sg626/p6260382.asc /home/sg626/p6260382.pro /home/sg626/p6260382.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:12:55 14 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:12:55 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:12:55 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:12:55 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:12:55 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:12:55 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:12:55 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:12:55 14 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:12:55 14 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:12:55 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:12:55 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:12:55 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:12:55 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:12:55 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:12:55 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:12:55 14 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:12:55 14 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:12:55 14 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:12:55 14 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:12:55 14 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:12:55 14 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:12:55 14 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:12:55 14 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:12:55 14 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 16:12:55 14 Mar 2017 UTC 19:46:44 14 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 15263 19:46:44 14 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:49:39 14 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 15330 19:49:39 14 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:49:39 14 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:49:39 14 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:49:39 14 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:49:39 14 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170314094938 ] 19:49:39 14 Mar 2017 UTC: INFO: Base.py(1333): PID:15337 19:49:39 14 Mar 2017 UTC: INFO: Base.py(1375): Started processing 19:49:39 14 Mar 2017 UTC 19:49:39 14 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:49:40 14 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:49:40 14 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:49:40 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:49:40 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:383 calls_made:1 call_cycle:0 19:49:40 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:49:40 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:383 calls_made:1 call_cycle:0 19:49:40 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:49:40 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:383 calls_made:1 call_cycle:0 19:49:40 14 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:383 calls_made:1 call_cycle:0 2243.9990 -15800.4000 03/14/17 19:44:31 UTC) to sdrifter@soest.hawaii.edu 19:49:40 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:383 calls_made:1 call_cycle:0 19:49:40 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:49:40 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:383 calls_made:1 call_cycle:0 19:49:40 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:49:40 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:383 calls_made:1 call_cycle:0 19:49:40 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:49:40 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:383 calls_made:1 call_cycle:0 19:49:40 14 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:49:40 14 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:49:46 14 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:49:47 14 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:49:47 14 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:49:47 14 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:49:47 14 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:49:47 14 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:49:49 14 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0383lz 19:49:49 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0383lz.x00 19:49:49 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0383lz.x01 19:49:49 14 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0383lz.r in process_file_group 19:49:49 14 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260383.log 19:49:49 14 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:49:49 14 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0383dz 19:49:49 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0383dz.x00 19:49:49 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0383dz.x01 19:49:49 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0383dz.x02 19:49:49 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0383dz.x03 19:49:49 14 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0383dz.r in process_file_group 19:49:50 14 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [383] 19:49:50 14 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [383] 19:49:50 14 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260383) for profiles 19:49:50 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 19:49:50 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/656) 655 656 to QC_BAD because CT out of water 19:49:50 14 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.097m) 19:49:50 14 Mar 2017 UTC: INFO: QC.py(365): Changed (8/656) 235 237 239 241 243 244 266 654 to QC_PROBABLY_BAD because raw temperature spikes 19:49:50 14 Mar 2017 UTC: INFO: QC.py(377): Changed (1/656) 656 to QC_BAD because raw salinity below bound 19:49:50 14 Mar 2017 UTC: INFO: QC.py(408): Changed (5/656) 237 239 241 243 244 to QC_PROBABLY_BAD because raw conductivity spikes 19:49:50 14 Mar 2017 UTC: INFO: QC.py(180): Changed (8/656) 235 237 239 241 243 244 266 654 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:49:50 14 Mar 2017 UTC: INFO: QC.py(180): Changed (1/656) 655 to QC_BAD because changed raw cond implies changed raw salinity 19:49:50 14 Mar 2017 UTC: INFO: QC.py(365): Changed (8/656) 235 237 239 241 243 244 266 654 to QC_INTERPOLATED because temperature spikes 19:49:50 14 Mar 2017 UTC: INFO: QC.py(377): Changed (1/656) 656 to QC_BAD because salinity below bound 19:49:50 14 Mar 2017 UTC: INFO: QC.py(408): Changed (5/656) 237 239 241 243 244 to QC_INTERPOLATED because conductivity spikes 19:49:50 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/656) 253:257 to QC_BAD because slow apogee CT flow 19:49:50 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/656) 1:6 to QC_BAD because prior to dive start 19:49:50 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/656) 1:6 253:257 655 656 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:49:50 14 Mar 2017 UTC: INFO: QC.py(180): Changed (13/656) 1:6 253:257 655 656 to QC_BAD because changed corrected salin implies changed speed 19:49:51 14 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:49:51 14 Mar 2017 UTC: INFO: QC.py(180): Changed (8/656) 235 237 239 241 243 244 266 654 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 19:49:51 14 Mar 2017 UTC: INFO: QC.py(180): Changed (8/656) 235 237 239 241 243 244 266 654 to QC_INTERPOLATED because changed corrected temp implies changed speed 19:49:51 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.20 cm/s 19:49:51 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.40 cm/s 19:49:51 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:49:51 14 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (191/656) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:49:51 14 Mar 2017 UTC: INFO: QC.py(180): Changed (3/656) 241 266 654 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 19:49:51 14 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (191/656) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 19:49:51 14 Mar 2017 UTC: INFO: QC.py(180): Changed (3/656) 241 266 654 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 19:49:51 14 Mar 2017 UTC: INFO: QC.py(180): Changed (13/656) 1:6 253:257 655 656 to QC_BAD because changed salinity implies changed optode oxygen 19:49:51 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:49:51 14 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:49:51 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 19:49:51 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 383: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.98% reduction 19:49:51 14 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.383 19:49:51 14 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:49:51 14 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:49:51 14 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:49:52 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 19:49:52 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 19:53:03 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 19:53:04 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 19:53:04 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 19:53:42 14 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:53:42 14 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:53:42 14 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:53:42 14 Mar 2017 UTC /home/sg626/p6260383.log /home/sg626/p6260383.eng /home/sg626/p6260383.asc /home/sg626/p6260383.pro /home/sg626/p6260383.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 19:53:42 14 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:53:42 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:53:42 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:53:42 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:53:42 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:53:42 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:53:42 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:53:42 14 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:53:42 14 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:53:42 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:53:42 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:53:42 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:53:42 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:53:42 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:53:42 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:53:42 14 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:53:42 14 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:53:42 14 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:53:42 14 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:53:42 14 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:53:42 14 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:53:42 14 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:53:42 14 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:53:42 14 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 19:53:42 14 Mar 2017 UTC 23:39:02 14 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 21591 23:39:03 14 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 23:42:17 14 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 21977 23:42:17 14 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:42:17 14 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:42:17 14 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:42:17 14 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:42:17 14 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170314134217 ] 23:42:17 14 Mar 2017 UTC: INFO: Base.py(1333): PID:21985 23:42:18 14 Mar 2017 UTC: INFO: Base.py(1375): Started processing 23:42:18 14 Mar 2017 UTC 23:42:18 14 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:42:19 14 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:42:19 14 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:42:19 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:42:19 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:384 calls_made:1 call_cycle:0 23:42:19 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:42:19 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:384 calls_made:1 call_cycle:0 23:42:19 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:42:19 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:384 calls_made:1 call_cycle:0 23:42:19 14 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:384 calls_made:1 call_cycle:0 2244.1520 -15759.6350 03/14/17 23:36:48 UTC) to sdrifter@soest.hawaii.edu 23:42:19 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:384 calls_made:1 call_cycle:0 23:42:19 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:42:19 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:384 calls_made:1 call_cycle:0 23:42:19 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:42:19 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:384 calls_made:1 call_cycle:0 23:42:19 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:42:19 14 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:384 calls_made:1 call_cycle:0 23:42:19 14 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:42:19 14 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:42:25 14 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:42:26 14 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:42:26 14 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:42:26 14 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:42:26 14 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:42:26 14 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:42:28 14 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0384lz 23:42:28 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0384lz.x00 23:42:28 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0384lz.x01 23:42:28 14 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0384lz.r in process_file_group 23:42:28 14 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260384.log 23:42:28 14 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:42:28 14 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0384dz 23:42:28 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0384dz.x00 23:42:28 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0384dz.x01 23:42:28 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0384dz.x02 23:42:28 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0384dz.x03 23:42:28 14 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0384dz.x04 23:42:28 14 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0384dz.r in process_file_group 23:42:29 14 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [384] 23:42:29 14 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [384] 23:42:29 14 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260384) for profiles 23:42:29 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 23:42:29 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/705) 702:704 to QC_BAD because CT out of water 23:42:29 14 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.103m) 23:42:29 14 Mar 2017 UTC: INFO: QC.py(365): Changed (6/705) 4 5 251 701 702 704 to QC_PROBABLY_BAD because raw temperature spikes 23:42:29 14 Mar 2017 UTC: INFO: QC.py(377): Changed (2/705) 703 704 to QC_BAD because raw salinity below bound 23:42:29 14 Mar 2017 UTC: INFO: QC.py(408): Changed (2/705) 251 701 to QC_PROBABLY_BAD because raw conductivity spikes 23:42:29 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/705) 705 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 23:42:29 14 Mar 2017 UTC: INFO: QC.py(180): Changed (5/705) 4 5 251 701 702 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 23:42:29 14 Mar 2017 UTC: INFO: QC.py(180): Changed (2/705) 702 705 to QC_BAD because changed raw cond implies changed raw salinity 23:42:29 14 Mar 2017 UTC: INFO: QC.py(365): Changed (6/705) 4 5 251 701 702 704 to QC_INTERPOLATED because temperature spikes 23:42:29 14 Mar 2017 UTC: INFO: QC.py(377): Changed (2/705) 703 704 to QC_BAD because salinity below bound 23:42:29 14 Mar 2017 UTC: INFO: QC.py(408): Changed (2/705) 251 701 to QC_INTERPOLATED because conductivity spikes 23:42:29 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/705) 705 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 23:42:29 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/705) 264:268 to QC_BAD because slow apogee CT flow 23:42:29 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/705) 1:6 to QC_BAD because prior to dive start 23:42:29 14 Mar 2017 UTC: INFO: QC.py(488): Changed (1/705) 701 to QC_PROBABLY_BAD because bad interpolation anchors 23:42:29 14 Mar 2017 UTC: INFO: QC.py(489): SUGGESTION: 384 bad_conductivity data_points in_between 699 701 % bad interpolation anchors 23:42:29 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/705) 1:6 264:268 702:705 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 23:42:29 14 Mar 2017 UTC: INFO: QC.py(180): Changed (15/705) 1:6 264:268 702:705 to QC_BAD because changed corrected salin implies changed speed 23:42:30 14 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 23:42:30 14 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 384 interp_salinity data_points in_between 398 402 % suspect thermal-inertia points 399 400 23:42:30 14 Mar 2017 UTC: INFO: QC.py(180): Changed (2/705) 251 701 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 23:42:30 14 Mar 2017 UTC: INFO: QC.py(180): Changed (1/705) 701 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 23:42:30 14 Mar 2017 UTC: INFO: QC.py(180): Changed (2/705) 251 701 to QC_INTERPOLATED because changed corrected temp implies changed speed 23:42:30 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.48 cm/s 23:42:30 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.29 cm/s 23:42:30 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 23:42:30 14 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (198/705) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 23:42:30 14 Mar 2017 UTC: INFO: QC.py(180): Changed (6/705) 4 5 251 701 702 704 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 23:42:30 14 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (198/705) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 23:42:30 14 Mar 2017 UTC: INFO: QC.py(180): Changed (6/705) 4 5 251 701 702 704 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 23:42:30 14 Mar 2017 UTC: INFO: QC.py(180): Changed (1/705) 701 to QC_PROBABLY_BAD because changed salinity implies changed optode oxygen 23:42:30 14 Mar 2017 UTC: INFO: QC.py(180): Changed (15/705) 1:6 264:268 702:705 to QC_BAD because changed salinity implies changed optode oxygen 23:42:30 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 23:42:30 14 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 23:42:30 14 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 23:42:30 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 384: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.13% reduction 23:42:30 14 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.384 23:42:30 14 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:42:30 14 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:42:30 14 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:42:31 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 23:42:31 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 23:45:42 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 23:45:43 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 23:45:43 14 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 23:46:21 14 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:46:21 14 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:46:21 14 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:46:21 14 Mar 2017 UTC /home/sg626/p6260384.log /home/sg626/p6260384.eng /home/sg626/p6260384.asc /home/sg626/p6260384.pro /home/sg626/p6260384.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 23:46:21 14 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:46:21 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:46:21 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:46:21 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:46:21 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:46:21 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:46:21 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:46:21 14 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:46:21 14 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:46:21 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:46:21 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:46:21 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:46:21 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:46:21 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:46:21 14 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:46:21 14 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:46:21 14 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:46:21 14 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:46:21 14 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:46:21 14 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:46:21 14 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:46:21 14 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:46:21 14 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:46:21 14 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 23:46:21 14 Mar 2017 UTC 03:27:04 15 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 28615 03:27:04 15 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:30:17 15 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 28958 03:30:17 15 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:30:17 15 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:30:17 15 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:30:17 15 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:30:17 15 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170314173016 ] 03:30:17 15 Mar 2017 UTC: INFO: Base.py(1333): PID:28966 03:30:17 15 Mar 2017 UTC: INFO: Base.py(1375): Started processing 03:30:17 15 Mar 2017 UTC 03:30:17 15 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:30:18 15 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:30:18 15 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:30:18 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:30:18 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:385 calls_made:1 call_cycle:0 03:30:18 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:30:18 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:385 calls_made:1 call_cycle:0 03:30:18 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:30:18 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:385 calls_made:1 call_cycle:0 03:30:18 15 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:385 calls_made:1 call_cycle:0 2244.0120 -15800.8290 03/15/17 03:24:49 UTC) to sdrifter@soest.hawaii.edu 03:30:18 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:385 calls_made:1 call_cycle:0 03:30:18 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:30:18 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:385 calls_made:1 call_cycle:0 03:30:18 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:30:18 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:385 calls_made:1 call_cycle:0 03:30:18 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:30:18 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:385 calls_made:1 call_cycle:0 03:30:18 15 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:30:18 15 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:30:24 15 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:30:25 15 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:30:25 15 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:30:25 15 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:30:25 15 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:30:25 15 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:30:27 15 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0385lz 03:30:27 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0385lz.x00 03:30:27 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0385lz.x01 03:30:27 15 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0385lz.r in process_file_group 03:30:27 15 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260385.log 03:30:27 15 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:30:27 15 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0385dz 03:30:27 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0385dz.x00 03:30:27 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0385dz.x01 03:30:27 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0385dz.x02 03:30:27 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0385dz.x03 03:30:27 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0385dz.x04 03:30:27 15 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0385dz.r in process_file_group 03:30:28 15 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [385] 03:30:28 15 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [385] 03:30:28 15 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260385) for profiles 03:30:28 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 03:30:28 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/695) 695 to QC_BAD because CT out of water 03:30:28 15 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.063m) 03:30:28 15 Mar 2017 UTC: INFO: QC.py(365): Changed (4/695) 3 251 263 693 to QC_PROBABLY_BAD because raw temperature spikes 03:30:28 15 Mar 2017 UTC: INFO: QC.py(377): Changed (1/695) 695 to QC_BAD because raw salinity below bound 03:30:28 15 Mar 2017 UTC: INFO: QC.py(408): Changed (4/695) 2 3 251 263 to QC_PROBABLY_BAD because raw conductivity spikes 03:30:28 15 Mar 2017 UTC: INFO: QC.py(180): Changed (4/695) 3 251 263 693 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 03:30:28 15 Mar 2017 UTC: INFO: QC.py(180): Changed (1/695) 2 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 03:30:28 15 Mar 2017 UTC: INFO: QC.py(365): Changed (4/695) 3 251 263 693 to QC_INTERPOLATED because temperature spikes 03:30:28 15 Mar 2017 UTC: INFO: QC.py(377): Changed (1/695) 695 to QC_BAD because salinity below bound 03:30:28 15 Mar 2017 UTC: INFO: QC.py(408): Changed (4/695) 2 3 251 263 to QC_INTERPOLATED because conductivity spikes 03:30:28 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/695) 261:265 to QC_BAD because slow apogee CT flow 03:30:28 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/695) 1:6 to QC_BAD because prior to dive start 03:30:28 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/695) 1:6 261:265 695 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:30:28 15 Mar 2017 UTC: INFO: QC.py(180): Changed (12/695) 1:6 261:265 695 to QC_BAD because changed corrected salin implies changed speed 03:30:29 15 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 03:30:29 15 Mar 2017 UTC: INFO: QC.py(180): Changed (2/695) 251 693 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 03:30:29 15 Mar 2017 UTC: INFO: QC.py(180): Changed (2/695) 251 693 to QC_INTERPOLATED because changed corrected temp implies changed speed 03:30:29 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.46 cm/s 03:30:29 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.37 cm/s 03:30:29 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:30:29 15 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (194/695) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:30:29 15 Mar 2017 UTC: INFO: QC.py(180): Changed (3/695) 3 251 693 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:30:29 15 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (194/695) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 03:30:29 15 Mar 2017 UTC: INFO: QC.py(180): Changed (3/695) 3 251 693 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 03:30:29 15 Mar 2017 UTC: INFO: QC.py(180): Changed (12/695) 1:6 261:265 695 to QC_BAD because changed salinity implies changed optode oxygen 03:30:29 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:30:29 15 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:30:29 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 03:30:29 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 385: Data set size for profile, binned and kkyy files reduced by 12 points, a 1.73% reduction 03:30:29 15 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.385 03:30:29 15 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:30:29 15 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:30:29 15 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:30:30 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 03:30:30 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 03:33:39 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 03:33:40 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 03:33:40 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 03:34:18 15 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:34:18 15 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:34:18 15 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:34:18 15 Mar 2017 UTC /home/sg626/p6260385.log /home/sg626/p6260385.eng /home/sg626/p6260385.asc /home/sg626/p6260385.pro /home/sg626/p6260385.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 03:34:18 15 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:34:18 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:34:18 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:34:18 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:34:18 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:34:18 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:34:18 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:34:18 15 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:34:18 15 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:34:18 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:34:18 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:34:18 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:34:18 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:34:18 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:34:18 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:34:18 15 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:34:18 15 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:34:18 15 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:34:18 15 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:34:18 15 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:34:18 15 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:34:18 15 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:34:18 15 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:34:18 15 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 03:34:18 15 Mar 2017 UTC 07:10:12 15 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 2399 07:10:12 15 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:14:22 15 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 2544 07:14:22 15 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:14:22 15 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:14:22 15 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:14:22 15 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:14:22 15 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170314211421 ] 07:14:22 15 Mar 2017 UTC: INFO: Base.py(1333): PID:2552 07:14:22 15 Mar 2017 UTC: INFO: Base.py(1375): Started processing 07:14:22 15 Mar 2017 UTC 07:14:22 15 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:14:23 15 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:14:23 15 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:14:23 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:14:23 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:386 calls_made:1 call_cycle:0 07:14:23 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:14:23 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:386 calls_made:1 call_cycle:0 07:14:23 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:14:23 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:386 calls_made:1 call_cycle:0 07:14:23 15 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:386 calls_made:1 call_cycle:0 2243.6340 -15800.0480 03/15/17 07:07:55 UTC) to sdrifter@soest.hawaii.edu 07:14:23 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:386 calls_made:1 call_cycle:0 07:14:23 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:14:23 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:386 calls_made:1 call_cycle:0 07:14:23 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:14:23 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:386 calls_made:1 call_cycle:0 07:14:23 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:14:23 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:386 calls_made:1 call_cycle:0 07:14:23 15 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:14:23 15 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:14:29 15 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:14:30 15 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:14:30 15 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:14:30 15 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:14:30 15 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:14:30 15 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:14:33 15 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0386lz 07:14:33 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0386lz.x00 07:14:33 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0386lz.x01 07:14:33 15 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0386lz.r in process_file_group 07:14:33 15 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260386.log 07:14:33 15 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:14:33 15 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0386dz 07:14:33 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0386dz.x00 07:14:33 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0386dz.x01 07:14:33 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0386dz.x02 07:14:33 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0386dz.x03 07:14:33 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0386dz.x04 07:14:33 15 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0386dz.r in process_file_group 07:14:33 15 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [386] 07:14:33 15 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [386] 07:14:33 15 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260386) for profiles 07:14:33 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 07:14:34 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/687) 685:687 to QC_BAD because CT out of water 07:14:34 15 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.043m) 07:14:34 15 Mar 2017 UTC: INFO: QC.py(365): Changed (5/687) 225 241 255 266 686 to QC_PROBABLY_BAD because raw temperature spikes 07:14:34 15 Mar 2017 UTC: INFO: QC.py(377): Changed (3/687) 685:687 to QC_BAD because raw salinity below bound 07:14:34 15 Mar 2017 UTC: INFO: QC.py(408): Changed (2/687) 225 255 to QC_PROBABLY_BAD because raw conductivity spikes 07:14:34 15 Mar 2017 UTC: INFO: QC.py(180): Changed (4/687) 225 241 255 266 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:14:34 15 Mar 2017 UTC: INFO: QC.py(365): Changed (5/687) 225 241 255 266 686 to QC_INTERPOLATED because temperature spikes 07:14:34 15 Mar 2017 UTC: INFO: QC.py(377): Changed (3/687) 685:687 to QC_BAD because salinity below bound 07:14:34 15 Mar 2017 UTC: INFO: QC.py(408): Changed (2/687) 225 255 to QC_INTERPOLATED because conductivity spikes 07:14:34 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/687) 254:258 to QC_BAD because slow apogee CT flow 07:14:34 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/687) 1:6 to QC_BAD because prior to dive start 07:14:34 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/687) 1:6 254:258 685:687 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:14:34 15 Mar 2017 UTC: INFO: QC.py(180): Changed (14/687) 1:6 254:258 685:687 to QC_BAD because changed corrected salin implies changed speed 07:14:34 15 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:14:34 15 Mar 2017 UTC: INFO: QC.py(180): Changed (3/687) 225 241 266 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 07:14:34 15 Mar 2017 UTC: INFO: QC.py(180): Changed (3/687) 225 241 266 to QC_INTERPOLATED because changed corrected temp implies changed speed 07:14:34 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 27.67 cm/s 07:14:34 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.88 cm/s 07:14:34 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:14:34 15 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (190/687) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:14:34 15 Mar 2017 UTC: INFO: QC.py(180): Changed (3/687) 241 266 686 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:14:34 15 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (190/687) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 07:14:34 15 Mar 2017 UTC: INFO: QC.py(180): Changed (3/687) 241 266 686 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:14:34 15 Mar 2017 UTC: INFO: QC.py(180): Changed (14/687) 1:6 254:258 685:687 to QC_BAD because changed salinity implies changed optode oxygen 07:14:34 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:14:34 15 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:14:34 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 07:14:35 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 386: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.04% reduction 07:14:35 15 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.386 07:14:35 15 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:14:35 15 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:14:35 15 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:14:35 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 07:14:35 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:17:48 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 07:17:49 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:17:49 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:18:27 15 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:18:27 15 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:18:27 15 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:18:27 15 Mar 2017 UTC /home/sg626/p6260386.log /home/sg626/p6260386.eng /home/sg626/p6260386.asc /home/sg626/p6260386.pro /home/sg626/p6260386.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:18:27 15 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:18:27 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:18:27 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:18:27 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:18:27 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:18:27 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:18:27 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:18:27 15 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:18:27 15 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:18:27 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:18:27 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:18:27 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:18:27 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:18:27 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:18:27 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:18:27 15 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:18:27 15 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:18:27 15 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:18:27 15 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:18:27 15 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:18:27 15 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:18:27 15 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:18:27 15 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:18:27 15 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 07:18:27 15 Mar 2017 UTC 10:54:23 15 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9290 10:54:23 15 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:57:28 15 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9417 10:57:28 15 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:57:28 15 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:57:28 15 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:57:28 15 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:57:28 15 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170315005727 ] 10:57:28 15 Mar 2017 UTC: INFO: Base.py(1333): PID:9424 10:57:28 15 Mar 2017 UTC: INFO: Base.py(1375): Started processing 10:57:28 15 Mar 2017 UTC 10:57:28 15 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:57:29 15 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:57:29 15 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:57:29 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:57:29 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:387 calls_made:1 call_cycle:0 10:57:29 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:57:29 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:387 calls_made:1 call_cycle:0 10:57:29 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:57:29 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:387 calls_made:1 call_cycle:0 10:57:29 15 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:387 calls_made:1 call_cycle:0 2243.6810 -15800.4000 03/15/17 10:52:09 UTC) to sdrifter@soest.hawaii.edu 10:57:29 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:387 calls_made:1 call_cycle:0 10:57:29 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:57:29 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:387 calls_made:1 call_cycle:0 10:57:29 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:57:29 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:387 calls_made:1 call_cycle:0 10:57:29 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:57:29 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:387 calls_made:1 call_cycle:0 10:57:29 15 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:57:29 15 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:57:35 15 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:57:36 15 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:57:36 15 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:57:36 15 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:57:37 15 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:57:37 15 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:57:39 15 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0387lz 10:57:39 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0387lz.x00 10:57:39 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0387lz.x01 10:57:39 15 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0387lz.r in process_file_group 10:57:39 15 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260387.log 10:57:39 15 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:57:39 15 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0387dz 10:57:39 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0387dz.x00 10:57:39 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0387dz.x01 10:57:39 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0387dz.x02 10:57:39 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0387dz.x03 10:57:39 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0387dz.x04 10:57:39 15 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0387dz.r in process_file_group 10:57:39 15 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [387] 10:57:39 15 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [387] 10:57:40 15 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260387) for profiles 10:57:40 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 10:57:40 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/667) 666 667 to QC_BAD because CT out of water 10:57:40 15 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.080m) 10:57:40 15 Mar 2017 UTC: INFO: QC.py(365): Changed (3/667) 2 257 666 to QC_PROBABLY_BAD because raw temperature spikes 10:57:40 15 Mar 2017 UTC: INFO: QC.py(180): Changed (3/667) 2 257 666 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 10:57:40 15 Mar 2017 UTC: INFO: QC.py(180): Changed (2/667) 666 667 to QC_BAD because changed raw cond implies changed raw salinity 10:57:40 15 Mar 2017 UTC: INFO: QC.py(365): Changed (3/667) 2 257 666 to QC_INTERPOLATED because temperature spikes 10:57:40 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/667) 256:260 to QC_BAD because slow apogee CT flow 10:57:40 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/667) 1:6 to QC_BAD because prior to dive start 10:57:40 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/667) 1:6 256:260 666 667 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:57:40 15 Mar 2017 UTC: INFO: QC.py(180): Changed (13/667) 1:6 256:260 666 667 to QC_BAD because changed corrected salin implies changed speed 10:57:41 15 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 10:57:41 15 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 387 interp_salinity data_points in_between 330 386 % suspect thermal-inertia points 384 10:57:41 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.11 cm/s 10:57:41 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.30 cm/s 10:57:41 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:57:41 15 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (190/667) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:57:41 15 Mar 2017 UTC: INFO: QC.py(180): Changed (2/667) 2 666 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 10:57:41 15 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (190/667) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 10:57:41 15 Mar 2017 UTC: INFO: QC.py(180): Changed (2/667) 2 666 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 10:57:41 15 Mar 2017 UTC: INFO: QC.py(180): Changed (13/667) 1:6 256:260 666 667 to QC_BAD because changed salinity implies changed optode oxygen 10:57:41 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:57:41 15 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:57:41 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 10:57:41 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 387: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.95% reduction 10:57:41 15 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.387 10:57:41 15 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:57:41 15 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:57:41 15 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:57:41 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 10:57:41 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 11:00:54 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 11:00:55 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 11:00:55 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 11:01:34 15 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:01:34 15 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:01:34 15 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:01:34 15 Mar 2017 UTC /home/sg626/p6260387.log /home/sg626/p6260387.eng /home/sg626/p6260387.asc /home/sg626/p6260387.pro /home/sg626/p6260387.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 11:01:34 15 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:01:34 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:01:34 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:01:34 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:01:34 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:01:34 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:01:34 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:01:34 15 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:01:34 15 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:01:34 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:01:34 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:01:34 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:01:34 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:01:34 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:01:34 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:01:34 15 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:01:34 15 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 11:01:34 15 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 11:01:34 15 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 11:01:34 15 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 11:01:34 15 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:01:34 15 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:01:34 15 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:01:34 15 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 11:01:34 15 Mar 2017 UTC 14:34:14 15 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 15521 14:34:14 15 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:37:25 15 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 15646 14:37:25 15 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:37:25 15 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 14:37:25 15 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 14:37:25 15 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:37:25 15 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170315043724 ] 14:37:25 15 Mar 2017 UTC: INFO: Base.py(1333): PID:15653 14:37:25 15 Mar 2017 UTC: INFO: Base.py(1375): Started processing 14:37:25 15 Mar 2017 UTC 14:37:25 15 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 14:37:26 15 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 14:37:26 15 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:37:26 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:37:26 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:388 calls_made:1 call_cycle:0 14:37:26 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:37:26 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:388 calls_made:1 call_cycle:0 14:37:26 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:37:26 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:388 calls_made:1 call_cycle:0 14:37:26 15 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:388 calls_made:1 call_cycle:0 2243.7790 -15800.1760 03/15/17 14:32:01 UTC) to sdrifter@soest.hawaii.edu 14:37:26 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:388 calls_made:1 call_cycle:0 14:37:26 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:37:26 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:388 calls_made:1 call_cycle:0 14:37:26 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:37:26 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:388 calls_made:1 call_cycle:0 14:37:26 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:37:26 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:388 calls_made:1 call_cycle:0 14:37:26 15 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:37:26 15 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:37:32 15 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:37:33 15 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:37:33 15 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 14:37:33 15 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:37:33 15 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:37:33 15 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 14:37:36 15 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0388lz 14:37:36 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0388lz.x00 14:37:36 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0388lz.x01 14:37:36 15 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0388lz.r in process_file_group 14:37:36 15 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260388.log 14:37:36 15 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 14:37:36 15 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0388dz 14:37:36 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0388dz.x00 14:37:36 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0388dz.x01 14:37:36 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0388dz.x02 14:37:36 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0388dz.x03 14:37:36 15 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0388dz.r in process_file_group 14:37:36 15 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [388] 14:37:36 15 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [388] 14:37:37 15 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260388) for profiles 14:37:37 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 14:37:37 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/649) 648 649 to QC_BAD because CT out of water 14:37:37 15 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.117m) 14:37:37 15 Mar 2017 UTC: INFO: QC.py(365): Changed (3/649) 2 647 648 to QC_PROBABLY_BAD because raw temperature spikes 14:37:37 15 Mar 2017 UTC: INFO: QC.py(377): Changed (1/649) 648 to QC_BAD because raw salinity below bound 14:37:37 15 Mar 2017 UTC: INFO: QC.py(180): Changed (2/649) 2 647 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:37:37 15 Mar 2017 UTC: INFO: QC.py(180): Changed (1/649) 649 to QC_BAD because changed raw cond implies changed raw salinity 14:37:37 15 Mar 2017 UTC: INFO: QC.py(365): Changed (3/649) 2 647 648 to QC_INTERPOLATED because temperature spikes 14:37:37 15 Mar 2017 UTC: INFO: QC.py(377): Changed (1/649) 648 to QC_BAD because salinity below bound 14:37:37 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/649) 263:267 to QC_BAD because slow apogee CT flow 14:37:37 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/649) 1:6 to QC_BAD because prior to dive start 14:37:37 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/649) 1:6 263:267 648 649 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:37:37 15 Mar 2017 UTC: INFO: QC.py(180): Changed (13/649) 1:6 263:267 648 649 to QC_BAD because changed corrected salin implies changed speed 14:37:37 15 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:37:37 15 Mar 2017 UTC: INFO: QC.py(180): Changed (1/649) 647 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 14:37:37 15 Mar 2017 UTC: INFO: QC.py(180): Changed (1/649) 647 to QC_INTERPOLATED because changed corrected temp implies changed speed 14:37:37 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.79 cm/s 14:37:37 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.19 cm/s 14:37:37 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:37:37 15 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (192/649) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:37:37 15 Mar 2017 UTC: INFO: QC.py(180): Changed (3/649) 2 647 648 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 14:37:37 15 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (192/649) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 14:37:37 15 Mar 2017 UTC: INFO: QC.py(180): Changed (3/649) 2 647 648 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 14:37:37 15 Mar 2017 UTC: INFO: QC.py(180): Changed (13/649) 1:6 263:267 648 649 to QC_BAD because changed salinity implies changed optode oxygen 14:37:37 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:37:37 15 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:37:37 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 14:37:38 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 388: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.00% reduction 14:37:38 15 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.388 14:37:38 15 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:37:38 15 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:37:38 15 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:37:38 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 14:37:38 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 14:40:51 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 14:40:52 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 14:40:52 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 14:41:31 15 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:41:31 15 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:41:31 15 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:41:31 15 Mar 2017 UTC /home/sg626/p6260388.log /home/sg626/p6260388.eng /home/sg626/p6260388.asc /home/sg626/p6260388.pro /home/sg626/p6260388.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 14:41:31 15 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:41:31 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:41:31 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:41:31 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:41:31 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:41:31 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:41:31 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:41:31 15 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:41:31 15 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:41:31 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:41:31 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:41:31 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:41:31 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:41:31 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:41:31 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:41:31 15 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:41:31 15 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:41:31 15 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:41:31 15 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:41:31 15 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:41:31 15 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:41:31 15 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:41:31 15 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:41:31 15 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 14:41:31 15 Mar 2017 UTC 18:20:59 15 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 21674 18:20:59 15 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 18:24:13 15 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 21805 18:24:13 15 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:24:13 15 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 18:24:13 15 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 18:24:13 15 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:24:13 15 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170315082413 ] 18:24:13 15 Mar 2017 UTC: INFO: Base.py(1333): PID:21812 18:24:13 15 Mar 2017 UTC: INFO: Base.py(1375): Started processing 18:24:13 15 Mar 2017 UTC 18:24:13 15 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 18:24:14 15 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 18:24:14 15 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:24:14 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:24:14 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:389 calls_made:1 call_cycle:0 18:24:14 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:24:14 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:389 calls_made:1 call_cycle:0 18:24:14 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:24:14 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:389 calls_made:1 call_cycle:0 18:24:14 15 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:389 calls_made:1 call_cycle:0 2243.7820 -15759.9930 03/15/17 18:18:44 UTC) to sdrifter@soest.hawaii.edu 18:24:15 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:389 calls_made:1 call_cycle:0 18:24:15 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:24:15 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:389 calls_made:1 call_cycle:0 18:24:15 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:24:15 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:389 calls_made:1 call_cycle:0 18:24:15 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:24:15 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:389 calls_made:1 call_cycle:0 18:24:15 15 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:24:15 15 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:24:21 15 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:24:22 15 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:24:22 15 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 18:24:22 15 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:24:22 15 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:24:22 15 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 18:24:24 15 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0389lz 18:24:24 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0389lz.x00 18:24:24 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0389lz.x01 18:24:24 15 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0389lz.r in process_file_group 18:24:24 15 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260389.log 18:24:24 15 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 18:24:24 15 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0389dz 18:24:24 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0389dz.x00 18:24:24 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0389dz.x01 18:24:24 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0389dz.x02 18:24:24 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0389dz.x03 18:24:24 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0389dz.x04 18:24:24 15 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0389dz.r in process_file_group 18:24:25 15 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [389] 18:24:25 15 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [389] 18:24:25 15 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260389) for profiles 18:24:25 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 18:24:25 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/709) 707:709 to QC_BAD because CT out of water 18:24:25 15 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.096m) 18:24:25 15 Mar 2017 UTC: INFO: QC.py(365): Changed (3/709) 2 707 708 to QC_PROBABLY_BAD because raw temperature spikes 18:24:25 15 Mar 2017 UTC: INFO: QC.py(377): Changed (2/709) 708 709 to QC_BAD because raw salinity below bound 18:24:25 15 Mar 2017 UTC: INFO: QC.py(180): Changed (2/709) 2 707 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 18:24:25 15 Mar 2017 UTC: INFO: QC.py(180): Changed (1/709) 707 to QC_BAD because changed raw cond implies changed raw salinity 18:24:25 15 Mar 2017 UTC: INFO: QC.py(365): Changed (3/709) 2 707 708 to QC_INTERPOLATED because temperature spikes 18:24:25 15 Mar 2017 UTC: INFO: QC.py(377): Changed (2/709) 708 709 to QC_BAD because salinity below bound 18:24:25 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/709) 262:266 to QC_BAD because slow apogee CT flow 18:24:25 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/709) 1:6 to QC_BAD because prior to dive start 18:24:25 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/709) 1:6 262:266 707:709 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 18:24:25 15 Mar 2017 UTC: INFO: QC.py(180): Changed (14/709) 1:6 262:266 707:709 to QC_BAD because changed corrected salin implies changed speed 18:24:26 15 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 18:24:26 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.08 cm/s 18:24:26 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.11 cm/s 18:24:26 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 18:24:26 15 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (189/709) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 18:24:26 15 Mar 2017 UTC: INFO: QC.py(180): Changed (3/709) 2 707 708 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 18:24:26 15 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (189/709) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 18:24:26 15 Mar 2017 UTC: INFO: QC.py(180): Changed (3/709) 2 707 708 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 18:24:26 15 Mar 2017 UTC: INFO: QC.py(180): Changed (14/709) 1:6 262:266 707:709 to QC_BAD because changed salinity implies changed optode oxygen 18:24:26 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 18:24:26 15 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 18:24:26 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 18:24:26 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 389: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.97% reduction 18:24:26 15 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.389 18:24:26 15 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:24:26 15 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:24:26 15 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:24:27 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 18:24:27 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 18:27:39 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 18:27:41 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 18:27:41 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 18:28:20 15 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:28:20 15 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:28:20 15 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:28:20 15 Mar 2017 UTC /home/sg626/p6260389.log /home/sg626/p6260389.eng /home/sg626/p6260389.asc /home/sg626/p6260389.pro /home/sg626/p6260389.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 18:28:20 15 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:28:20 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:28:20 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:28:20 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:28:20 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:28:20 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:28:20 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:28:20 15 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:28:20 15 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:28:20 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:28:20 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:28:20 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:28:20 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:28:20 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:28:20 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:28:20 15 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:28:20 15 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 18:28:20 15 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 18:28:20 15 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 18:28:20 15 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 18:28:20 15 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:28:20 15 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:28:20 15 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:28:20 15 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 18:28:20 15 Mar 2017 UTC 22:11:28 15 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 28007 22:11:28 15 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:14:32 15 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 28142 22:14:32 15 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:14:32 15 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:14:32 15 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:14:32 15 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:14:32 15 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170315121431 ] 22:14:32 15 Mar 2017 UTC: INFO: Base.py(1333): PID:28150 22:14:32 15 Mar 2017 UTC: INFO: Base.py(1375): Started processing 22:14:32 15 Mar 2017 UTC 22:14:32 15 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:14:33 15 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:14:33 15 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:14:33 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:14:33 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:390 calls_made:2 call_cycle:0 22:14:33 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:14:33 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:390 calls_made:2 call_cycle:0 22:14:33 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:14:33 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:390 calls_made:2 call_cycle:0 22:14:33 15 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:390 calls_made:2 call_cycle:0 2243.7060 -15800.1490 03/15/17 22:07:00 UTC) to sdrifter@soest.hawaii.edu 22:14:33 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:390 calls_made:2 call_cycle:0 22:14:33 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:14:33 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:390 calls_made:2 call_cycle:0 22:14:33 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:14:33 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:390 calls_made:2 call_cycle:0 22:14:33 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:14:33 15 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:390 calls_made:2 call_cycle:0 22:14:33 15 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:14:33 15 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:14:39 15 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:14:40 15 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:14:40 15 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:14:40 15 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:14:40 15 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:14:40 15 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:14:43 15 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0390lz 22:14:43 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0390lz.x00 22:14:43 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0390lz.x01 22:14:43 15 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0390lz.r in process_file_group 22:14:43 15 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260390.log 22:14:43 15 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 22:14:43 15 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0390dz 22:14:43 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0390dz.x00 22:14:43 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0390dz.x01 22:14:43 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0390dz.x02 22:14:43 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0390dz.x03 22:14:43 15 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0390dz.x04 22:14:43 15 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0390dz.r in process_file_group 22:14:43 15 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [390] 22:14:43 15 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [390] 22:14:43 15 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260390) for profiles 22:14:43 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 22:14:43 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/673) 672 673 to QC_BAD because CT out of water 22:14:43 15 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.081m) 22:14:43 15 Mar 2017 UTC: INFO: QC.py(365): Changed (2/673) 2 211 to QC_PROBABLY_BAD because raw temperature spikes 22:14:43 15 Mar 2017 UTC: INFO: QC.py(180): Changed (2/673) 2 211 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 22:14:43 15 Mar 2017 UTC: INFO: QC.py(180): Changed (2/673) 672 673 to QC_BAD because changed raw cond implies changed raw salinity 22:14:43 15 Mar 2017 UTC: INFO: QC.py(365): Changed (2/673) 2 211 to QC_INTERPOLATED because temperature spikes 22:14:43 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/673) 253:257 to QC_BAD because slow apogee CT flow 22:14:43 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/673) 1:6 to QC_BAD because prior to dive start 22:14:43 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/673) 1:6 253:257 672 673 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:14:43 15 Mar 2017 UTC: INFO: QC.py(180): Changed (13/673) 1:6 253:257 672 673 to QC_BAD because changed corrected salin implies changed speed 22:14:44 15 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:14:44 15 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 390 interp_salinity data_points in_between 368 389 % suspect thermal-inertia points 385 386 22:14:44 15 Mar 2017 UTC: INFO: QC.py(180): Changed (1/673) 211 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 22:14:44 15 Mar 2017 UTC: INFO: QC.py(180): Changed (1/673) 211 to QC_INTERPOLATED because changed corrected temp implies changed speed 22:14:44 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.80 cm/s 22:14:44 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.43 cm/s 22:14:44 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:14:44 15 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (197/673) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:14:44 15 Mar 2017 UTC: INFO: QC.py(180): Changed (2/673) 2 211 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 22:14:44 15 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (197/673) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 22:14:44 15 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/673) 671 673 to QC_BAD because bad aa4330 oyxgen 22:14:44 15 Mar 2017 UTC: INFO: QC.py(180): Changed (2/673) 2 211 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 22:14:44 15 Mar 2017 UTC: INFO: QC.py(180): Changed (12/673) 1:6 253:257 672 to QC_BAD because changed salinity implies changed optode oxygen 22:14:44 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:14:44 15 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 22:14:44 15 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 22:14:44 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 390: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.93% reduction 22:14:45 15 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.390 22:14:45 15 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:14:45 15 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:14:45 15 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:14:45 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 22:14:45 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 22:17:59 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 22:18:00 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 22:18:00 15 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 22:18:39 15 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:18:39 15 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:18:39 15 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:18:39 15 Mar 2017 UTC /home/sg626/p6260390.log /home/sg626/p6260390.eng /home/sg626/p6260390.asc /home/sg626/p6260390.pro /home/sg626/p6260390.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 22:18:39 15 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:18:39 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:18:39 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:18:39 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:18:39 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:18:39 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:18:39 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:18:39 15 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:18:39 15 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:18:39 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:18:39 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:18:39 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:18:39 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:18:39 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:18:39 15 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:18:39 15 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:18:39 15 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:18:39 15 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:18:39 15 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:18:39 15 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:18:39 15 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:18:39 15 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:18:39 15 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:18:39 15 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 22:18:39 15 Mar 2017 UTC 02:00:43 16 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 2145 02:00:43 16 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:03:58 16 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 2453 02:03:58 16 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:03:58 16 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:03:58 16 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:03:58 16 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:03:58 16 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170315160357 ] 02:03:58 16 Mar 2017 UTC: INFO: Base.py(1333): PID:2461 02:03:58 16 Mar 2017 UTC: INFO: Base.py(1375): Started processing 02:03:58 16 Mar 2017 UTC 02:03:58 16 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:03:59 16 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:03:59 16 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:03:59 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:03:59 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:391 calls_made:1 call_cycle:0 02:03:59 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:03:59 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:391 calls_made:1 call_cycle:0 02:03:59 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:03:59 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:391 calls_made:1 call_cycle:0 02:03:59 16 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:391 calls_made:1 call_cycle:0 2243.4570 -15800.2950 03/16/17 01:58:31 UTC) to sdrifter@soest.hawaii.edu 02:03:59 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:391 calls_made:1 call_cycle:0 02:03:59 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:03:59 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:391 calls_made:1 call_cycle:0 02:03:59 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:03:59 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:391 calls_made:1 call_cycle:0 02:03:59 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:03:59 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:391 calls_made:1 call_cycle:0 02:03:59 16 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:03:59 16 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:04:05 16 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:04:06 16 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:04:06 16 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:04:06 16 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:04:06 16 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:04:06 16 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:04:09 16 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0391lz 02:04:09 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0391lz.x00 02:04:09 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0391lz.x01 02:04:09 16 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0391lz.r in process_file_group 02:04:09 16 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260391.log 02:04:09 16 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 02:04:09 16 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0391dz 02:04:09 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0391dz.x00 02:04:09 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0391dz.x01 02:04:09 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0391dz.x02 02:04:09 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0391dz.x03 02:04:09 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0391dz.x04 02:04:09 16 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0391dz.r in process_file_group 02:04:09 16 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [391] 02:04:09 16 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [391] 02:04:09 16 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260391) for profiles 02:04:09 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 02:04:10 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/690) 688:690 to QC_BAD because CT out of water 02:04:10 16 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.027m) 02:04:10 16 Mar 2017 UTC: INFO: QC.py(365): Changed (1/690) 688 to QC_PROBABLY_BAD because raw temperature spikes 02:04:10 16 Mar 2017 UTC: INFO: QC.py(377): Changed (1/690) 690 to QC_BAD because raw salinity below bound 02:04:10 16 Mar 2017 UTC: INFO: QC.py(408): Changed (2/690) 2 302 to QC_PROBABLY_BAD because raw conductivity spikes 02:04:10 16 Mar 2017 UTC: INFO: QC.py(180): Changed (1/690) 688 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:04:10 16 Mar 2017 UTC: INFO: QC.py(180): Changed (2/690) 2 302 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 02:04:10 16 Mar 2017 UTC: INFO: QC.py(180): Changed (2/690) 688 689 to QC_BAD because changed raw cond implies changed raw salinity 02:04:10 16 Mar 2017 UTC: INFO: QC.py(365): Changed (1/690) 688 to QC_INTERPOLATED because temperature spikes 02:04:10 16 Mar 2017 UTC: INFO: QC.py(377): Changed (1/690) 690 to QC_BAD because salinity below bound 02:04:10 16 Mar 2017 UTC: INFO: QC.py(408): Changed (2/690) 2 302 to QC_INTERPOLATED because conductivity spikes 02:04:10 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/690) 258:262 to QC_BAD because slow apogee CT flow 02:04:10 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/690) 1:6 to QC_BAD because prior to dive start 02:04:10 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/690) 1:6 258:262 688:690 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:04:10 16 Mar 2017 UTC: INFO: QC.py(180): Changed (14/690) 1:6 258:262 688:690 to QC_BAD because changed corrected salin implies changed speed 02:04:10 16 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:04:10 16 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 391 interp_salinity data_points in_between 365 407 % suspect thermal-inertia points 399:402 02:04:10 16 Mar 2017 UTC: INFO: QC.py(180): Changed (1/690) 302 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 02:04:10 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.82 cm/s 02:04:10 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.31 cm/s 02:04:10 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:04:10 16 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (194/690) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:04:10 16 Mar 2017 UTC: INFO: QC.py(180): Changed (1/690) 688 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:04:10 16 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (194/690) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 02:04:10 16 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/690) 689 to QC_BAD because bad aa4330 oyxgen 02:04:10 16 Mar 2017 UTC: INFO: QC.py(180): Changed (1/690) 688 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:04:10 16 Mar 2017 UTC: INFO: QC.py(180): Changed (13/690) 1:6 258:262 688 690 to QC_BAD because changed salinity implies changed optode oxygen 02:04:10 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:04:10 16 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:04:10 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 02:04:11 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 391: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.03% reduction 02:04:11 16 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.391 02:04:11 16 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:04:11 16 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:04:11 16 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:04:11 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 02:04:11 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 02:07:24 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 02:07:25 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 02:07:25 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 02:08:04 16 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:08:04 16 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:08:04 16 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:08:04 16 Mar 2017 UTC /home/sg626/p6260391.log /home/sg626/p6260391.eng /home/sg626/p6260391.asc /home/sg626/p6260391.pro /home/sg626/p6260391.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 02:08:04 16 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:08:04 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:08:04 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:08:04 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:08:04 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:08:04 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:08:04 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:08:04 16 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:08:04 16 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:08:04 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:08:04 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:08:04 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:08:04 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:08:04 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:08:04 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:08:04 16 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:08:04 16 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:08:04 16 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:08:04 16 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:08:04 16 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:08:04 16 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:08:04 16 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:08:04 16 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:08:04 16 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 02:08:04 16 Mar 2017 UTC 05:43:48 16 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 8351 05:43:48 16 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:46:37 16 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 8471 05:46:37 16 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:46:37 16 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:46:37 16 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:46:37 16 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:46:37 16 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170315194636 ] 05:46:37 16 Mar 2017 UTC: INFO: Base.py(1333): PID:8479 05:46:37 16 Mar 2017 UTC: INFO: Base.py(1375): Started processing 05:46:37 16 Mar 2017 UTC 05:46:37 16 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:46:38 16 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:46:38 16 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:46:38 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:46:38 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:392 calls_made:2 call_cycle:0 05:46:38 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:46:38 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:392 calls_made:2 call_cycle:0 05:46:38 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:46:38 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:392 calls_made:2 call_cycle:0 05:46:38 16 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:392 calls_made:2 call_cycle:0 2243.4470 -15800.2780 03/16/17 05:39:54 UTC) to sdrifter@soest.hawaii.edu 05:46:38 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:392 calls_made:2 call_cycle:0 05:46:38 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:46:38 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:392 calls_made:2 call_cycle:0 05:46:38 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:46:38 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:392 calls_made:2 call_cycle:0 05:46:38 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:46:38 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:392 calls_made:2 call_cycle:0 05:46:38 16 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:46:38 16 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:46:44 16 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:46:45 16 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:46:45 16 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:46:45 16 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:46:45 16 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:46:45 16 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:46:48 16 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0392lz 05:46:48 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0392lz.x00 05:46:48 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0392lz.x01 05:46:48 16 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0392lz.r in process_file_group 05:46:48 16 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260392.log 05:46:48 16 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:46:48 16 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0392dz 05:46:48 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0392dz.x00 05:46:48 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0392dz.x01 05:46:48 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0392dz.x02 05:46:48 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0392dz.x03 05:46:48 16 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0392dz.r in process_file_group 05:46:48 16 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [392] 05:46:48 16 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [392] 05:46:48 16 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260392) for profiles 05:46:48 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:46:49 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/649) 648 649 to QC_BAD because CT out of water 05:46:49 16 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.087m) 05:46:49 16 Mar 2017 UTC: INFO: QC.py(365): Changed (2/649) 647 648 to QC_PROBABLY_BAD because raw temperature spikes 05:46:49 16 Mar 2017 UTC: INFO: QC.py(408): Changed (1/649) 2 to QC_PROBABLY_BAD because raw conductivity spikes 05:46:49 16 Mar 2017 UTC: INFO: QC.py(180): Changed (2/649) 647 648 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:46:49 16 Mar 2017 UTC: INFO: QC.py(180): Changed (1/649) 2 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 05:46:49 16 Mar 2017 UTC: INFO: QC.py(180): Changed (2/649) 648 649 to QC_BAD because changed raw cond implies changed raw salinity 05:46:49 16 Mar 2017 UTC: INFO: QC.py(365): Changed (2/649) 647 648 to QC_INTERPOLATED because temperature spikes 05:46:49 16 Mar 2017 UTC: INFO: QC.py(408): Changed (1/649) 2 to QC_INTERPOLATED because conductivity spikes 05:46:49 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/649) 252:256 to QC_BAD because slow apogee CT flow 05:46:49 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/649) 1:6 to QC_BAD because prior to dive start 05:46:49 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/649) 1:6 252:256 648 649 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:46:49 16 Mar 2017 UTC: INFO: QC.py(180): Changed (13/649) 1:6 252:256 648 649 to QC_BAD because changed corrected salin implies changed speed 05:46:49 16 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:46:49 16 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 392 interp_salinity data_points in_between 348 377 % suspect thermal-inertia points 370 371 05:46:49 16 Mar 2017 UTC: INFO: QC.py(180): Changed (1/649) 647 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 05:46:49 16 Mar 2017 UTC: INFO: QC.py(180): Changed (1/649) 647 to QC_INTERPOLATED because changed corrected temp implies changed speed 05:46:49 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.89 cm/s 05:46:49 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.94 cm/s 05:46:49 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:46:49 16 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (189/649) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:46:49 16 Mar 2017 UTC: INFO: QC.py(180): Changed (2/649) 647 648 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:46:49 16 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (189/649) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:46:49 16 Mar 2017 UTC: INFO: QC.py(180): Changed (2/649) 647 648 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:46:49 16 Mar 2017 UTC: INFO: QC.py(180): Changed (13/649) 1:6 252:256 648 649 to QC_BAD because changed salinity implies changed optode oxygen 05:46:49 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:46:49 16 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:46:49 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 05:46:50 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 392: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.00% reduction 05:46:50 16 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.392 05:46:50 16 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:46:50 16 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:46:50 16 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:46:50 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 05:46:50 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 05:50:05 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 05:50:06 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 05:50:06 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 05:50:46 16 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:50:46 16 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:50:46 16 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:50:46 16 Mar 2017 UTC /home/sg626/p6260392.log /home/sg626/p6260392.eng /home/sg626/p6260392.asc /home/sg626/p6260392.pro /home/sg626/p6260392.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 05:50:46 16 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:50:46 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:50:46 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:50:46 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:50:46 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:50:46 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:50:46 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:50:46 16 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:50:46 16 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:50:46 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:50:46 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:50:46 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:50:46 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:50:46 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:50:46 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:50:46 16 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:50:46 16 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:50:46 16 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:50:46 16 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:50:46 16 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:50:46 16 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:50:46 16 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:50:46 16 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:50:46 16 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 05:50:46 16 Mar 2017 UTC 09:35:13 16 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 14303 09:35:13 16 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:38:19 16 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 14432 09:38:19 16 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:38:19 16 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:38:19 16 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:38:19 16 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:38:19 16 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170315233818 ] 09:38:19 16 Mar 2017 UTC: INFO: Base.py(1333): PID:14439 09:38:19 16 Mar 2017 UTC: INFO: Base.py(1375): Started processing 09:38:19 16 Mar 2017 UTC 09:38:19 16 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:38:20 16 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:38:20 16 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:38:20 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:38:20 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:393 calls_made:1 call_cycle:0 09:38:20 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:38:20 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:393 calls_made:1 call_cycle:0 09:38:20 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:38:20 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:393 calls_made:1 call_cycle:0 09:38:20 16 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:393 calls_made:1 call_cycle:0 2243.4360 -15800.3250 03/16/17 09:33:02 UTC) to sdrifter@soest.hawaii.edu 09:38:20 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:393 calls_made:1 call_cycle:0 09:38:20 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:38:20 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:393 calls_made:1 call_cycle:0 09:38:20 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:38:20 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:393 calls_made:1 call_cycle:0 09:38:20 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:38:20 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:393 calls_made:1 call_cycle:0 09:38:20 16 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:38:20 16 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:38:26 16 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:38:27 16 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:38:27 16 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:38:27 16 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:38:27 16 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:38:27 16 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:38:30 16 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0393lz 09:38:30 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0393lz.x00 09:38:30 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0393lz.x01 09:38:30 16 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0393lz.r in process_file_group 09:38:30 16 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260393.log 09:38:30 16 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:38:30 16 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0393dz 09:38:30 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0393dz.x00 09:38:30 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0393dz.x01 09:38:30 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0393dz.x02 09:38:30 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0393dz.x03 09:38:30 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0393dz.x04 09:38:30 16 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0393dz.r in process_file_group 09:38:30 16 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [393] 09:38:30 16 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [393] 09:38:30 16 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260393) for profiles 09:38:30 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 09:38:30 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/698) 697 698 to QC_BAD because CT out of water 09:38:30 16 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.080m) 09:38:30 16 Mar 2017 UTC: INFO: QC.py(365): Changed (1/698) 2 to QC_PROBABLY_BAD because raw temperature spikes 09:38:30 16 Mar 2017 UTC: INFO: QC.py(377): Changed (2/698) 697 698 to QC_BAD because raw salinity below bound 09:38:30 16 Mar 2017 UTC: INFO: QC.py(180): Changed (1/698) 2 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 09:38:30 16 Mar 2017 UTC: INFO: QC.py(365): Changed (1/698) 2 to QC_INTERPOLATED because temperature spikes 09:38:30 16 Mar 2017 UTC: INFO: QC.py(377): Changed (2/698) 697 698 to QC_BAD because salinity below bound 09:38:30 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/698) 255:259 to QC_BAD because slow apogee CT flow 09:38:30 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/698) 1:6 to QC_BAD because prior to dive start 09:38:30 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/698) 1:6 255:259 697 698 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:38:30 16 Mar 2017 UTC: INFO: QC.py(180): Changed (13/698) 1:6 255:259 697 698 to QC_BAD because changed corrected salin implies changed speed 09:38:31 16 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:38:31 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.78 cm/s 09:38:31 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.40 cm/s 09:38:31 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:38:31 16 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (198/698) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:38:31 16 Mar 2017 UTC: INFO: QC.py(180): Changed (1/698) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:38:31 16 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (198/698) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 09:38:31 16 Mar 2017 UTC: INFO: QC.py(180): Changed (1/698) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:38:31 16 Mar 2017 UTC: INFO: QC.py(180): Changed (13/698) 1:6 255:259 697 698 to QC_BAD because changed salinity implies changed optode oxygen 09:38:31 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:38:31 16 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:38:31 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 09:38:32 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 393: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.86% reduction 09:38:32 16 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.393 09:38:32 16 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:38:32 16 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:38:32 16 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:38:32 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 09:38:32 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 09:41:46 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 09:41:47 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 09:41:47 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 09:42:27 16 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:42:27 16 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:42:27 16 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:42:27 16 Mar 2017 UTC /home/sg626/p6260393.log /home/sg626/p6260393.eng /home/sg626/p6260393.asc /home/sg626/p6260393.pro /home/sg626/p6260393.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 09:42:27 16 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:42:27 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:42:27 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:42:27 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:42:27 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:42:27 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:42:27 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:42:27 16 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:42:27 16 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:42:27 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:42:27 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:42:27 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:42:27 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:42:27 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:42:27 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:42:27 16 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:42:27 16 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:42:27 16 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:42:27 16 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:42:27 16 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:42:27 16 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:42:27 16 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:42:27 16 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:42:27 16 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 09:42:27 16 Mar 2017 UTC 13:15:38 16 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 20698 13:15:38 16 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:18:30 16 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 20813 13:18:30 16 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:18:30 16 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:18:30 16 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:18:30 16 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:18:30 16 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170316031830 ] 13:18:30 16 Mar 2017 UTC: INFO: Base.py(1333): PID:20820 13:18:30 16 Mar 2017 UTC: INFO: Base.py(1375): Started processing 13:18:30 16 Mar 2017 UTC 13:18:30 16 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:18:31 16 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:18:31 16 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:18:31 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:18:31 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:394 calls_made:1 call_cycle:0 13:18:31 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:18:31 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:394 calls_made:1 call_cycle:0 13:18:31 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:18:31 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:394 calls_made:1 call_cycle:0 13:18:31 16 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:394 calls_made:1 call_cycle:0 2243.6380 -15800.2490 03/16/17 13:13:30 UTC) to sdrifter@soest.hawaii.edu 13:18:32 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:394 calls_made:1 call_cycle:0 13:18:32 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:18:32 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:394 calls_made:1 call_cycle:0 13:18:32 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:18:32 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:394 calls_made:1 call_cycle:0 13:18:32 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:18:32 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:394 calls_made:1 call_cycle:0 13:18:32 16 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:18:32 16 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:18:38 16 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:18:39 16 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:18:39 16 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:18:39 16 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:18:39 16 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:18:39 16 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:18:41 16 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0394lz 13:18:41 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0394lz.x00 13:18:41 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0394lz.x01 13:18:41 16 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0394lz.r in process_file_group 13:18:41 16 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260394.log 13:18:41 16 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:18:41 16 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0394dz 13:18:41 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0394dz.x00 13:18:41 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0394dz.x01 13:18:41 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0394dz.x02 13:18:41 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0394dz.x03 13:18:41 16 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0394dz.r in process_file_group 13:18:42 16 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [394] 13:18:42 16 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [394] 13:18:42 16 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260394) for profiles 13:18:42 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:18:42 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/634) 634 to QC_BAD because CT out of water 13:18:42 16 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.031m) 13:18:42 16 Mar 2017 UTC: INFO: QC.py(365): Changed (4/634) 2:4 209 to QC_PROBABLY_BAD because raw temperature spikes 13:18:42 16 Mar 2017 UTC: INFO: QC.py(408): Changed (1/634) 209 to QC_PROBABLY_BAD because raw conductivity spikes 13:18:42 16 Mar 2017 UTC: INFO: QC.py(180): Changed (4/634) 2:4 209 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:18:42 16 Mar 2017 UTC: INFO: QC.py(180): Changed (1/634) 634 to QC_BAD because changed raw cond implies changed raw salinity 13:18:42 16 Mar 2017 UTC: INFO: QC.py(365): Changed (4/634) 2:4 209 to QC_INTERPOLATED because temperature spikes 13:18:42 16 Mar 2017 UTC: INFO: QC.py(408): Changed (1/634) 209 to QC_INTERPOLATED because conductivity spikes 13:18:42 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/634) 256:260 to QC_BAD because slow apogee CT flow 13:18:42 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/634) 1:6 to QC_BAD because prior to dive start 13:18:42 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/634) 1:6 256:260 634 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:18:42 16 Mar 2017 UTC: INFO: QC.py(180): Changed (12/634) 1:6 256:260 634 to QC_BAD because changed corrected salin implies changed speed 13:18:43 16 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:18:43 16 Mar 2017 UTC: INFO: QC.py(180): Changed (1/634) 209 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 13:18:43 16 Mar 2017 UTC: INFO: QC.py(180): Changed (1/634) 209 to QC_INTERPOLATED because changed corrected temp implies changed speed 13:18:43 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.44 cm/s 13:18:43 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.42 cm/s 13:18:43 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:18:43 16 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (191/634) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:18:43 16 Mar 2017 UTC: INFO: QC.py(180): Changed (3/634) 2:4 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:18:43 16 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (191/634) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:18:43 16 Mar 2017 UTC: INFO: QC.py(180): Changed (3/634) 2:4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:18:43 16 Mar 2017 UTC: INFO: QC.py(180): Changed (12/634) 1:6 256:260 634 to QC_BAD because changed salinity implies changed optode oxygen 13:18:43 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:18:43 16 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:18:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:18:43 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 394: Data set size for profile, binned and kkyy files reduced by 12 points, a 1.89% reduction 13:18:43 16 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.394 13:18:43 16 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:18:43 16 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:18:43 16 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:18:44 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:18:44 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:22:01 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 13:22:02 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:22:02 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:22:41 16 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:22:41 16 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:22:41 16 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:22:41 16 Mar 2017 UTC /home/sg626/p6260394.log /home/sg626/p6260394.eng /home/sg626/p6260394.asc /home/sg626/p6260394.pro /home/sg626/p6260394.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:22:41 16 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:22:41 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:22:41 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:22:41 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:22:41 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:22:41 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:22:41 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:22:41 16 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:22:41 16 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:22:41 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:22:41 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:22:41 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:22:41 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:22:41 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:22:41 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:22:41 16 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:22:41 16 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:22:41 16 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:22:41 16 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:22:41 16 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:22:41 16 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:22:41 16 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:22:41 16 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:22:41 16 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 13:22:41 16 Mar 2017 UTC 17:01:18 16 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 26654 17:01:18 16 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:03:49 16 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 26768 17:03:49 16 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:03:49 16 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:03:49 16 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:03:49 16 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:03:49 16 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170316070348 ] 17:03:49 16 Mar 2017 UTC: INFO: Base.py(1333): PID:26775 17:03:49 16 Mar 2017 UTC: INFO: Base.py(1375): Started processing 17:03:49 16 Mar 2017 UTC 17:03:49 16 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:03:50 16 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:03:50 16 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:03:50 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:03:50 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:395 calls_made:1 call_cycle:0 17:03:50 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:03:50 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:395 calls_made:1 call_cycle:0 17:03:50 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:03:50 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:395 calls_made:1 call_cycle:0 17:03:50 16 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:395 calls_made:1 call_cycle:0 2243.8100 -15759.9030 03/16/17 16:59:01 UTC) to sdrifter@soest.hawaii.edu 17:03:50 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:395 calls_made:1 call_cycle:0 17:03:50 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:03:50 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:395 calls_made:1 call_cycle:0 17:03:50 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:03:50 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:395 calls_made:1 call_cycle:0 17:03:50 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:03:50 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:395 calls_made:1 call_cycle:0 17:03:50 16 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:03:50 16 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:03:56 16 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:03:57 16 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:03:57 16 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:03:57 16 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:03:57 16 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:03:57 16 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:04:00 16 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0395lz 17:04:00 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0395lz.x00 17:04:00 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0395lz.x01 17:04:00 16 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0395lz.r in process_file_group 17:04:00 16 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260395.log 17:04:00 16 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:04:00 16 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0395dz 17:04:00 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0395dz.x00 17:04:00 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0395dz.x01 17:04:00 16 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0395dz.r in process_file_group 17:04:00 16 Mar 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0395dz.r - expected 0x1317222365, generated 0x9367d275 17:04:00 16 Mar 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0395dz.r - expected 0x8609b3ce, generated 0x3875 17:04:00 16 Mar 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0395dz.r - skipping 17:04:00 16 Mar 2017 UTC: ERROR: Base.py(272): Could not process sg0395dz - skipping 17:04:00 16 Mar 2017 UTC: WARNING: Base.py(1624): No dives to process 17:04:00 16 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [395] 17:04:00 16 Mar 2017 UTC: INFO: Base.py(1780): No dives found to profile 17:04:00 16 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.395 17:04:00 16 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:04:00 16 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:04:00 16 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:04:00 16 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:04:00 16 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:04:00 16 Mar 2017 UTC: ERROR: Base.py(1960): Dive [395] failed to process completely. The following files were not processed completely: /home/sg626/sg0395dz.r Glider logout not seen - retransmissions from glider possible Consult baselog_170316070348 for details. 17:04:00 16 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:04:00 16 Mar 2017 UTC /home/sg626/p6260395.log 17:04:00 16 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:04:00 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:04:00 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:04:00 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:04:00 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:04:00 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:04:00 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:04:00 16 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:04:00 16 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:04:00 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:04:00 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:04:00 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:04:00 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:04:00 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:04:00 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:04:00 16 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:04:00 16 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:04:00 16 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:04:00 16 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:04:00 16 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:04:00 16 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:04:00 16 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:04:00 16 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:04:00 16 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 17:04:00 16 Mar 2017 UTC 17:06:07 16 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 27024 17:06:07 16 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:09:00 16 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 27138 17:09:00 16 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:09:00 16 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:09:00 16 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:09:00 16 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:09:00 16 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170316070859 ] 17:09:00 16 Mar 2017 UTC: INFO: Base.py(1333): PID:27146 17:09:00 16 Mar 2017 UTC: INFO: Base.py(1375): Started processing 17:09:00 16 Mar 2017 UTC 17:09:00 16 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:09:01 16 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:09:01 16 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:09:01 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:09:01 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:395 calls_made:2 call_cycle:0 17:09:01 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:09:01 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:395 calls_made:2 call_cycle:0 17:09:01 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:09:01 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:395 calls_made:2 call_cycle:0 17:09:01 16 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:395 calls_made:2 call_cycle:0 2243.8100 -15759.9030 03/16/17 16:59:01 UTC) to sdrifter@soest.hawaii.edu 17:09:01 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:395 calls_made:2 call_cycle:0 17:09:01 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:09:01 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:395 calls_made:2 call_cycle:0 17:09:01 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:09:01 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:395 calls_made:2 call_cycle:0 17:09:01 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:09:01 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:395 calls_made:2 call_cycle:0 17:09:01 16 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:09:01 16 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:09:07 16 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:09:08 16 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:09:08 16 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:09:08 16 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:09:08 16 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:09:08 16 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:09:11 16 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:09:11 16 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0395dz 17:09:11 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0395dz.x00 17:09:11 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0395dz.x01 17:09:11 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0395dz.x02 17:09:11 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0395dz.x03 17:09:11 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0395dz.x04 17:09:11 16 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0395dz.r in process_file_group 17:09:11 16 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [395] 17:09:11 16 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [395] 17:09:11 16 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260395) for profiles 17:09:11 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:09:11 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/671) 669:671 to QC_BAD because CT out of water 17:09:11 16 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.149m) 17:09:11 16 Mar 2017 UTC: INFO: QC.py(365): Changed (4/671) 2 3 669 670 to QC_PROBABLY_BAD because raw temperature spikes 17:09:11 16 Mar 2017 UTC: INFO: QC.py(377): Changed (3/671) 669:671 to QC_BAD because raw salinity below bound 17:09:11 16 Mar 2017 UTC: INFO: QC.py(180): Changed (2/671) 2 3 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:09:11 16 Mar 2017 UTC: INFO: QC.py(365): Changed (4/671) 2 3 669 670 to QC_INTERPOLATED because temperature spikes 17:09:11 16 Mar 2017 UTC: INFO: QC.py(377): Changed (3/671) 669:671 to QC_BAD because salinity below bound 17:09:11 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/671) 257:261 to QC_BAD because slow apogee CT flow 17:09:11 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/671) 1:6 to QC_BAD because prior to dive start 17:09:11 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/671) 1:6 257:261 669:671 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:09:12 16 Mar 2017 UTC: INFO: QC.py(180): Changed (14/671) 1:6 257:261 669:671 to QC_BAD because changed corrected salin implies changed speed 17:09:12 16 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:09:12 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.30 cm/s 17:09:12 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.47 cm/s 17:09:12 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:09:12 16 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (193/671) 139 140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:09:12 16 Mar 2017 UTC: INFO: QC.py(180): Changed (4/671) 2 3 669 670 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:09:12 16 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (193/671) 139 140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:09:12 16 Mar 2017 UTC: INFO: QC.py(180): Changed (4/671) 2 3 669 670 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:09:12 16 Mar 2017 UTC: INFO: QC.py(180): Changed (14/671) 1:6 257:261 669:671 to QC_BAD because changed salinity implies changed optode oxygen 17:09:12 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:09:12 16 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:09:12 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:09:13 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 395: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.09% reduction 17:09:13 16 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.395 17:09:13 16 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:09:13 16 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:09:13 16 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:09:13 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:09:13 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:12:29 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 17:12:30 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:12:30 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:13:10 16 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:13:10 16 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:13:10 16 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:13:10 16 Mar 2017 UTC /home/sg626/p6260395.eng /home/sg626/p6260395.asc /home/sg626/p6260395.pro /home/sg626/p6260395.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:13:10 16 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:13:10 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:13:10 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:13:10 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:13:10 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:13:10 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:13:10 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:13:10 16 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:13:10 16 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:13:10 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:13:10 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:13:10 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:13:10 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:13:10 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:13:10 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:13:10 16 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:13:10 16 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:13:10 16 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:13:10 16 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:13:10 16 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:13:10 16 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:13:10 16 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:13:10 16 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:13:10 16 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 17:13:10 16 Mar 2017 UTC 20:50:26 16 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 1221 20:50:26 16 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:53:30 16 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 1370 20:53:30 16 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:53:30 16 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:53:30 16 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:53:30 16 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:53:30 16 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170316105330 ] 20:53:30 16 Mar 2017 UTC: INFO: Base.py(1333): PID:1377 20:53:31 16 Mar 2017 UTC: INFO: Base.py(1375): Started processing 20:53:31 16 Mar 2017 UTC 20:53:31 16 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:53:32 16 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:53:32 16 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:53:32 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:53:32 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:396 calls_made:1 call_cycle:0 20:53:32 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:53:32 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:396 calls_made:1 call_cycle:0 20:53:32 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:53:32 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:396 calls_made:1 call_cycle:0 20:53:32 16 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:396 calls_made:1 call_cycle:0 2243.8890 -15800.1410 03/16/17 20:47:55 UTC) to sdrifter@soest.hawaii.edu 20:53:32 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:396 calls_made:1 call_cycle:0 20:53:32 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:53:32 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:396 calls_made:1 call_cycle:0 20:53:32 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:53:32 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:396 calls_made:1 call_cycle:0 20:53:32 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:53:32 16 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:396 calls_made:1 call_cycle:0 20:53:32 16 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:53:32 16 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:53:38 16 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:53:39 16 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:53:39 16 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:53:39 16 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:53:39 16 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:53:39 16 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:53:42 16 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0396lz 20:53:42 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0396lz.x00 20:53:42 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0396lz.x01 20:53:42 16 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0396lz.r in process_file_group 20:53:42 16 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260396.log 20:53:42 16 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:53:42 16 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0396dz 20:53:42 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0396dz.x00 20:53:42 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0396dz.x01 20:53:42 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0396dz.x02 20:53:42 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0396dz.x03 20:53:42 16 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0396dz.x04 20:53:42 16 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0396dz.r in process_file_group 20:53:42 16 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [396] 20:53:42 16 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [396] 20:53:42 16 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260396) for profiles 20:53:42 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 20:53:42 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/684) 682 683 to QC_BAD because CT out of water 20:53:42 16 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.075m) 20:53:42 16 Mar 2017 UTC: INFO: QC.py(365): Changed (4/684) 2 254 682 683 to QC_PROBABLY_BAD because raw temperature spikes 20:53:42 16 Mar 2017 UTC: INFO: QC.py(377): Changed (2/684) 682 683 to QC_BAD because raw salinity below bound 20:53:42 16 Mar 2017 UTC: INFO: QC.py(408): Changed (1/684) 254 to QC_PROBABLY_BAD because raw conductivity spikes 20:53:42 16 Mar 2017 UTC: INFO: QC.py(180): Changed (2/684) 2 254 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 20:53:42 16 Mar 2017 UTC: INFO: QC.py(365): Changed (4/684) 2 254 682 683 to QC_INTERPOLATED because temperature spikes 20:53:42 16 Mar 2017 UTC: INFO: QC.py(377): Changed (2/684) 682 683 to QC_BAD because salinity below bound 20:53:42 16 Mar 2017 UTC: INFO: QC.py(408): Changed (1/684) 254 to QC_INTERPOLATED because conductivity spikes 20:53:42 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/684) 252:256 to QC_BAD because slow apogee CT flow 20:53:42 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/684) 1:6 to QC_BAD because prior to dive start 20:53:42 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/684) 684 to QC_BAD because end of climb 20:53:42 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/684) 1:6 252:256 682:684 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 20:53:42 16 Mar 2017 UTC: INFO: QC.py(180): Changed (14/684) 1:6 252:256 682:684 to QC_BAD because changed corrected salin implies changed speed 20:53:43 16 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 20:53:43 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.79 cm/s 20:53:43 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.29 cm/s 20:53:43 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 20:53:43 16 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (189/684) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 20:53:43 16 Mar 2017 UTC: INFO: QC.py(180): Changed (3/684) 2 682 683 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 20:53:43 16 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (189/684) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 20:53:43 16 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/684) 679 680 to QC_BAD because bad aa4330 oyxgen 20:53:43 16 Mar 2017 UTC: INFO: QC.py(180): Changed (3/684) 2 682 683 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 20:53:43 16 Mar 2017 UTC: INFO: QC.py(180): Changed (14/684) 1:6 252:256 682:684 to QC_BAD because changed salinity implies changed optode oxygen 20:53:43 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 20:53:43 16 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 20:53:43 16 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 20:53:44 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 396: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.05% reduction 20:53:44 16 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.396 20:53:44 16 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:53:44 16 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:53:44 16 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:53:44 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 20:53:44 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 20:57:00 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 20:57:01 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 20:57:01 16 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 20:57:41 16 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:57:41 16 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:57:41 16 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:57:41 16 Mar 2017 UTC /home/sg626/p6260396.log /home/sg626/p6260396.eng /home/sg626/p6260396.asc /home/sg626/p6260396.pro /home/sg626/p6260396.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 20:57:41 16 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:57:41 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:57:41 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:57:41 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:57:41 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:57:41 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:57:41 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:57:41 16 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:57:41 16 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:57:41 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:57:41 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:57:41 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:57:41 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:57:41 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:57:41 16 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:57:41 16 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:57:41 16 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:57:41 16 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:57:41 16 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:57:41 16 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:57:41 16 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:57:41 16 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:57:41 16 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:57:41 16 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 20:57:41 16 Mar 2017 UTC 00:39:25 17 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 7993 00:39:25 17 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:42:42 17 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 8216 00:42:42 17 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:42:42 17 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:42:42 17 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:42:42 17 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:42:42 17 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170316144242 ] 00:42:42 17 Mar 2017 UTC: INFO: Base.py(1333): PID:8223 00:42:42 17 Mar 2017 UTC: INFO: Base.py(1375): Started processing 00:42:42 17 Mar 2017 UTC 00:42:42 17 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:42:44 17 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:42:44 17 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:42:44 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:42:44 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:397 calls_made:1 call_cycle:0 00:42:44 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:42:44 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:397 calls_made:1 call_cycle:0 00:42:44 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:42:44 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:397 calls_made:1 call_cycle:0 00:42:44 17 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:397 calls_made:1 call_cycle:0 2244.0100 -15800.0370 03/17/17 00:37:00 UTC) to sdrifter@soest.hawaii.edu 00:42:44 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:397 calls_made:1 call_cycle:0 00:42:44 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:42:44 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:397 calls_made:1 call_cycle:0 00:42:44 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:42:44 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:397 calls_made:1 call_cycle:0 00:42:44 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:42:44 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:397 calls_made:1 call_cycle:0 00:42:44 17 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:42:44 17 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:42:50 17 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:42:51 17 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:42:51 17 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:42:51 17 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:42:51 17 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:42:51 17 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:42:54 17 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0397lz 00:42:54 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0397lz.x00 00:42:54 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0397lz.x01 00:42:54 17 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0397lz.r in process_file_group 00:42:54 17 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260397.log 00:42:54 17 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:42:54 17 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0397dz 00:42:54 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0397dz.x00 00:42:54 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0397dz.x01 00:42:54 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0397dz.x02 00:42:54 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0397dz.x03 00:42:54 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0397dz.x04 00:42:54 17 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0397dz.r in process_file_group 00:42:54 17 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [397] 00:42:54 17 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [397] 00:42:54 17 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260397) for profiles 00:42:54 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 00:42:54 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/697) 695:697 to QC_BAD because CT out of water 00:42:54 17 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.060m) 00:42:54 17 Mar 2017 UTC: INFO: QC.py(365): Changed (3/697) 229 695 696 to QC_PROBABLY_BAD because raw temperature spikes 00:42:54 17 Mar 2017 UTC: INFO: QC.py(377): Changed (2/697) 695 697 to QC_BAD because raw salinity below bound 00:42:54 17 Mar 2017 UTC: INFO: QC.py(180): Changed (2/697) 229 696 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:42:54 17 Mar 2017 UTC: INFO: QC.py(180): Changed (1/697) 696 to QC_BAD because changed raw cond implies changed raw salinity 00:42:54 17 Mar 2017 UTC: INFO: QC.py(365): Changed (3/697) 229 695 696 to QC_INTERPOLATED because temperature spikes 00:42:54 17 Mar 2017 UTC: INFO: QC.py(377): Changed (2/697) 695 697 to QC_BAD because salinity below bound 00:42:54 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/697) 265:269 to QC_BAD because slow apogee CT flow 00:42:54 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/697) 1:6 to QC_BAD because prior to dive start 00:42:54 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/697) 694 to QC_BAD because end of climb 00:42:54 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/697) 1:6 265:269 694:697 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:42:54 17 Mar 2017 UTC: INFO: QC.py(180): Changed (15/697) 1:6 265:269 694:697 to QC_BAD because changed corrected salin implies changed speed 00:42:55 17 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:42:55 17 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 397 interp_salinity data_points in_between 357 394 % suspect thermal-inertia points 382 00:42:55 17 Mar 2017 UTC: INFO: QC.py(180): Changed (1/697) 229 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 00:42:55 17 Mar 2017 UTC: INFO: QC.py(180): Changed (1/697) 229 to QC_INTERPOLATED because changed corrected temp implies changed speed 00:42:55 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.25 cm/s 00:42:55 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.75 cm/s 00:42:55 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:42:55 17 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (195/697) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:42:55 17 Mar 2017 UTC: INFO: QC.py(180): Changed (2/697) 695 696 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:42:55 17 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (195/697) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 00:42:55 17 Mar 2017 UTC: INFO: QC.py(180): Changed (2/697) 695 696 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:42:55 17 Mar 2017 UTC: INFO: QC.py(180): Changed (15/697) 1:6 265:269 694:697 to QC_BAD because changed salinity implies changed optode oxygen 00:42:55 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:42:55 17 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:42:55 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 00:42:55 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 397: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.15% reduction 00:42:55 17 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.397 00:42:55 17 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:42:55 17 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:42:55 17 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:42:56 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 00:42:56 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 00:46:13 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 00:46:14 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 00:46:14 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 00:46:54 17 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:46:54 17 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:46:54 17 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:46:54 17 Mar 2017 UTC /home/sg626/p6260397.log /home/sg626/p6260397.eng /home/sg626/p6260397.asc /home/sg626/p6260397.pro /home/sg626/p6260397.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 00:46:54 17 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:46:54 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:46:54 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:46:54 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:46:54 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:46:54 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:46:54 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:46:54 17 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:46:54 17 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:46:54 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:46:54 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:46:54 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:46:54 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:46:54 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:46:54 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:46:54 17 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:46:54 17 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:46:54 17 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:46:54 17 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:46:54 17 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:46:54 17 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:46:54 17 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:46:54 17 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:46:54 17 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 00:46:54 17 Mar 2017 UTC 04:24:37 17 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 14381 04:24:37 17 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:27:47 17 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 14509 04:27:47 17 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:27:47 17 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:27:47 17 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:27:47 17 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:27:47 17 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170316182747 ] 04:27:47 17 Mar 2017 UTC: INFO: Base.py(1333): PID:14517 04:27:47 17 Mar 2017 UTC: INFO: Base.py(1375): Started processing 04:27:47 17 Mar 2017 UTC 04:27:48 17 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:27:49 17 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:27:49 17 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:27:49 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:27:49 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:398 calls_made:1 call_cycle:0 04:27:49 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:27:49 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:398 calls_made:1 call_cycle:0 04:27:49 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:27:49 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:398 calls_made:1 call_cycle:0 04:27:49 17 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:398 calls_made:1 call_cycle:0 2244.0970 -15759.9370 03/17/17 04:22:01 UTC) to sdrifter@soest.hawaii.edu 04:27:49 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:398 calls_made:1 call_cycle:0 04:27:49 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:27:49 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:398 calls_made:1 call_cycle:0 04:27:49 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:27:49 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:398 calls_made:1 call_cycle:0 04:27:49 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:27:49 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:398 calls_made:1 call_cycle:0 04:27:49 17 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:27:49 17 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:27:55 17 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:27:56 17 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:27:56 17 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:27:56 17 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:27:56 17 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:27:56 17 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:27:59 17 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0398lz 04:27:59 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0398lz.x00 04:27:59 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0398lz.x01 04:27:59 17 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0398lz.r in process_file_group 04:27:59 17 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260398.log 04:27:59 17 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:27:59 17 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0398dz 04:27:59 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0398dz.x00 04:27:59 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0398dz.x01 04:27:59 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0398dz.x02 04:27:59 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0398dz.x03 04:27:59 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0398dz.x04 04:27:59 17 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0398dz.r in process_file_group 04:27:59 17 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [398] 04:27:59 17 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [398] 04:28:00 17 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260398) for profiles 04:28:00 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 04:28:00 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/685) 683:685 to QC_BAD because CT out of water 04:28:00 17 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.179m) 04:28:00 17 Mar 2017 UTC: INFO: QC.py(365): Changed (6/685) 3 4 292 293 683 684 to QC_PROBABLY_BAD because raw temperature spikes 04:28:00 17 Mar 2017 UTC: INFO: QC.py(377): Changed (1/685) 684 to QC_BAD because raw salinity below bound 04:28:00 17 Mar 2017 UTC: INFO: QC.py(408): Changed (2/685) 292 293 to QC_PROBABLY_BAD because raw conductivity spikes 04:28:00 17 Mar 2017 UTC: INFO: QC.py(180): Changed (5/685) 3 4 292 293 683 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:28:00 17 Mar 2017 UTC: INFO: QC.py(180): Changed (2/685) 683 685 to QC_BAD because changed raw cond implies changed raw salinity 04:28:00 17 Mar 2017 UTC: INFO: QC.py(365): Changed (6/685) 3 4 292 293 683 684 to QC_INTERPOLATED because temperature spikes 04:28:00 17 Mar 2017 UTC: INFO: QC.py(377): Changed (1/685) 684 to QC_BAD because salinity below bound 04:28:00 17 Mar 2017 UTC: INFO: QC.py(408): Changed (2/685) 292 293 to QC_INTERPOLATED because conductivity spikes 04:28:00 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/685) 259:263 to QC_BAD because slow apogee CT flow 04:28:00 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/685) 1:6 to QC_BAD because prior to dive start 04:28:00 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/685) 1:6 259:263 683:685 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:28:00 17 Mar 2017 UTC: INFO: QC.py(180): Changed (14/685) 1:6 259:263 683:685 to QC_BAD because changed corrected salin implies changed speed 04:28:00 17 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:28:00 17 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 398 interp_salinity data_points in_between 361 392 % suspect thermal-inertia points 375 04:28:00 17 Mar 2017 UTC: INFO: QC.py(180): Changed (2/685) 292 293 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 04:28:00 17 Mar 2017 UTC: INFO: QC.py(180): Changed (2/685) 292 293 to QC_INTERPOLATED because changed corrected temp implies changed speed 04:28:00 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.81 cm/s 04:28:00 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.15 cm/s 04:28:00 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:28:00 17 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (190/685) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:28:00 17 Mar 2017 UTC: INFO: QC.py(180): Changed (4/685) 3 4 683 684 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:28:00 17 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (190/685) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 04:28:00 17 Mar 2017 UTC: INFO: QC.py(180): Changed (4/685) 3 4 683 684 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:28:00 17 Mar 2017 UTC: INFO: QC.py(180): Changed (14/685) 1:6 259:263 683:685 to QC_BAD because changed salinity implies changed optode oxygen 04:28:00 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:28:00 17 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:28:00 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 04:28:01 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 398: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.04% reduction 04:28:01 17 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.398 04:28:01 17 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:28:01 17 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:28:01 17 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:28:01 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 04:28:01 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 04:31:17 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 04:31:19 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 04:31:19 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 04:31:59 17 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:31:59 17 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:31:59 17 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:31:59 17 Mar 2017 UTC /home/sg626/p6260398.log /home/sg626/p6260398.eng /home/sg626/p6260398.asc /home/sg626/p6260398.pro /home/sg626/p6260398.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 04:31:59 17 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:31:59 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:31:59 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:31:59 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:31:59 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:31:59 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:31:59 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:31:59 17 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:31:59 17 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:31:59 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:31:59 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:31:59 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:31:59 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:31:59 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:31:59 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:31:59 17 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:31:59 17 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:31:59 17 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:31:59 17 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:31:59 17 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:31:59 17 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:31:59 17 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:31:59 17 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:31:59 17 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 04:31:59 17 Mar 2017 UTC 08:05:05 17 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 20674 08:05:05 17 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:07:54 17 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 20785 08:07:54 17 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:07:54 17 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:07:54 17 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:07:54 17 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:07:54 17 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170316220753 ] 08:07:54 17 Mar 2017 UTC: INFO: Base.py(1333): PID:20793 08:07:54 17 Mar 2017 UTC: INFO: Base.py(1375): Started processing 08:07:54 17 Mar 2017 UTC 08:07:54 17 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:07:55 17 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:07:55 17 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:07:55 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:07:55 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:399 calls_made:1 call_cycle:0 08:07:55 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:07:55 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:399 calls_made:1 call_cycle:0 08:07:55 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:07:55 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:399 calls_made:1 call_cycle:0 08:07:55 17 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:399 calls_made:1 call_cycle:0 2244.5130 -15800.4280 03/17/17 08:02:31 UTC) to sdrifter@soest.hawaii.edu 08:07:55 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:399 calls_made:1 call_cycle:0 08:07:55 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:07:55 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:399 calls_made:1 call_cycle:0 08:07:55 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:07:55 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:399 calls_made:1 call_cycle:0 08:07:55 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:07:55 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:399 calls_made:1 call_cycle:0 08:07:55 17 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:07:55 17 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:08:02 17 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:08:03 17 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:08:03 17 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:08:03 17 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:08:03 17 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:08:03 17 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:08:05 17 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0399lz 08:08:05 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0399lz.x00 08:08:05 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0399lz.x01 08:08:05 17 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0399lz.r in process_file_group 08:08:05 17 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260399.log 08:08:05 17 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:08:05 17 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0399dz 08:08:05 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0399dz.x00 08:08:05 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0399dz.x01 08:08:05 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0399dz.x02 08:08:05 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0399dz.x03 08:08:05 17 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0399dz.r in process_file_group 08:08:06 17 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [399] 08:08:06 17 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [399] 08:08:06 17 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260399) for profiles 08:08:06 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:08:06 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/614) 613 614 to QC_BAD because CT out of water 08:08:06 17 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.050m) 08:08:06 17 Mar 2017 UTC: INFO: QC.py(365): Changed (3/614) 4 251 613 to QC_PROBABLY_BAD because raw temperature spikes 08:08:06 17 Mar 2017 UTC: INFO: QC.py(408): Changed (1/614) 251 to QC_PROBABLY_BAD because raw conductivity spikes 08:08:06 17 Mar 2017 UTC: INFO: QC.py(180): Changed (3/614) 4 251 613 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:08:06 17 Mar 2017 UTC: INFO: QC.py(180): Changed (2/614) 613 614 to QC_BAD because changed raw cond implies changed raw salinity 08:08:06 17 Mar 2017 UTC: INFO: QC.py(365): Changed (3/614) 4 251 613 to QC_INTERPOLATED because temperature spikes 08:08:06 17 Mar 2017 UTC: INFO: QC.py(408): Changed (1/614) 251 to QC_INTERPOLATED because conductivity spikes 08:08:06 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/614) 249:253 to QC_BAD because slow apogee CT flow 08:08:06 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/614) 1:6 to QC_BAD because prior to dive start 08:08:06 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/614) 612 to QC_BAD because end of climb 08:08:06 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/614) 1:6 249:253 612:614 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:08:06 17 Mar 2017 UTC: INFO: QC.py(180): Changed (14/614) 1:6 249:253 612:614 to QC_BAD because changed corrected salin implies changed speed 08:08:07 17 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:08:07 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.39 cm/s 08:08:07 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.24 cm/s 08:08:07 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:08:07 17 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (196/614) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:08:07 17 Mar 2017 UTC: INFO: QC.py(180): Changed (3/614) 4 251 613 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:08:07 17 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (196/614) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:08:07 17 Mar 2017 UTC: INFO: QC.py(180): Changed (3/614) 4 251 613 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:08:07 17 Mar 2017 UTC: INFO: QC.py(180): Changed (14/614) 1:6 249:253 612:614 to QC_BAD because changed salinity implies changed optode oxygen 08:08:07 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:08:07 17 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:08:07 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 08:08:07 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 399: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.28% reduction 08:08:07 17 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.399 08:08:07 17 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:08:07 17 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:08:07 17 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:08:08 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 08:08:08 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 08:11:27 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 08:11:28 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 08:11:28 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 08:12:09 17 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:12:09 17 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:12:09 17 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:12:09 17 Mar 2017 UTC /home/sg626/p6260399.log /home/sg626/p6260399.eng /home/sg626/p6260399.asc /home/sg626/p6260399.pro /home/sg626/p6260399.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 08:12:09 17 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:12:09 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:12:09 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:12:09 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:12:09 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:12:09 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:12:09 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:12:09 17 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:12:09 17 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:12:09 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:12:09 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:12:09 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:12:09 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:12:09 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:12:09 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:12:09 17 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:12:09 17 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:12:09 17 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:12:09 17 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:12:09 17 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:12:09 17 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:12:09 17 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:12:09 17 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:12:09 17 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 08:12:09 17 Mar 2017 UTC 11:39:46 17 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 26587 11:39:46 17 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 11:42:43 17 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 26784 11:42:43 17 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:42:43 17 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 11:42:43 17 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 11:42:43 17 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:42:43 17 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170317014242 ] 11:42:43 17 Mar 2017 UTC: INFO: Base.py(1333): PID:26792 11:42:43 17 Mar 2017 UTC: INFO: Base.py(1375): Started processing 11:42:43 17 Mar 2017 UTC 11:42:43 17 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 11:42:44 17 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 11:42:44 17 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:42:44 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:42:44 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:400 calls_made:1 call_cycle:0 11:42:44 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:42:44 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:400 calls_made:1 call_cycle:0 11:42:44 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:42:44 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:400 calls_made:1 call_cycle:0 11:42:44 17 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:400 calls_made:1 call_cycle:0 2243.6940 -15759.1330 03/17/17 11:37:31 UTC) to sdrifter@soest.hawaii.edu 11:42:44 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:400 calls_made:1 call_cycle:0 11:42:44 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:42:44 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:400 calls_made:1 call_cycle:0 11:42:44 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:42:44 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:400 calls_made:1 call_cycle:0 11:42:44 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:42:44 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:400 calls_made:1 call_cycle:0 11:42:44 17 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:42:44 17 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:42:50 17 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:42:51 17 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:42:51 17 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 11:42:51 17 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:42:51 17 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:42:51 17 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 11:42:54 17 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0400lz 11:42:54 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0400lz.x00 11:42:54 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0400lz.x01 11:42:54 17 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0400lz.r in process_file_group 11:42:54 17 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260400.log 11:42:54 17 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 11:42:54 17 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0400dz 11:42:54 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0400dz.x00 11:42:54 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0400dz.x01 11:42:54 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0400dz.x02 11:42:54 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0400dz.x03 11:42:54 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0400dz.x04 11:42:54 17 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0400dz.r in process_file_group 11:42:55 17 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [400] 11:42:55 17 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [400] 11:42:55 17 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260400) for profiles 11:42:55 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 11:42:55 17 Mar 2017 UTC: INFO: QC.py(365): Changed (3/649) 2 257 260 to QC_PROBABLY_BAD because raw temperature spikes 11:42:55 17 Mar 2017 UTC: INFO: QC.py(408): Changed (2/649) 257 260 to QC_PROBABLY_BAD because raw conductivity spikes 11:42:55 17 Mar 2017 UTC: INFO: QC.py(180): Changed (3/649) 2 257 260 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 11:42:55 17 Mar 2017 UTC: INFO: QC.py(365): Changed (3/649) 2 257 260 to QC_INTERPOLATED because temperature spikes 11:42:55 17 Mar 2017 UTC: INFO: QC.py(408): Changed (2/649) 257 260 to QC_INTERPOLATED because conductivity spikes 11:42:55 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/649) 256:260 to QC_BAD because slow apogee CT flow 11:42:55 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/649) 1:6 to QC_BAD because prior to dive start 11:42:55 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/649) 1:6 256:260 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 11:42:55 17 Mar 2017 UTC: INFO: QC.py(180): Changed (11/649) 1:6 256:260 to QC_BAD because changed corrected salin implies changed speed 11:42:56 17 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 11:42:56 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.73 cm/s 11:42:56 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.44 cm/s 11:42:56 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 11:42:56 17 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (182/649) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 11:42:56 17 Mar 2017 UTC: INFO: QC.py(180): Changed (1/649) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 11:42:56 17 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (182/649) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 11:42:56 17 Mar 2017 UTC: INFO: QC.py(180): Changed (1/649) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 11:42:56 17 Mar 2017 UTC: INFO: QC.py(180): Changed (11/649) 1:6 256:260 to QC_BAD because changed salinity implies changed optode oxygen 11:42:56 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 11:42:56 17 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 11:42:56 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 11:42:56 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 400: Data set size for profile, binned and kkyy files reduced by 11 points, a 1.69% reduction 11:42:56 17 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.400 11:42:56 17 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:42:56 17 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:42:56 17 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:42:56 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 11:42:56 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 11:46:15 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 11:46:16 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 11:46:16 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 11:46:56 17 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:46:56 17 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:46:56 17 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:46:56 17 Mar 2017 UTC /home/sg626/p6260400.log /home/sg626/p6260400.eng /home/sg626/p6260400.asc /home/sg626/p6260400.pro /home/sg626/p6260400.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 11:46:56 17 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:46:56 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:46:56 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:46:56 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:46:56 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:46:56 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:46:56 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:46:56 17 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:46:56 17 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:46:56 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:46:56 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:46:56 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:46:56 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:46:56 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:46:56 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:46:56 17 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:46:56 17 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 11:46:56 17 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 11:46:56 17 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 11:46:56 17 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 11:46:56 17 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:46:56 17 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:46:56 17 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:46:56 17 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 11:46:56 17 Mar 2017 UTC 15:22:07 17 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 361 15:22:07 17 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 15:25:06 17 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 504 15:25:06 17 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 15:25:06 17 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 15:25:06 17 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 15:25:06 17 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 15:25:06 17 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170317052506 ] 15:25:06 17 Mar 2017 UTC: INFO: Base.py(1333): PID:511 15:25:06 17 Mar 2017 UTC: INFO: Base.py(1375): Started processing 15:25:06 17 Mar 2017 UTC 15:25:06 17 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 15:25:07 17 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 15:25:07 17 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 15:25:07 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:25:07 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:401 calls_made:1 call_cycle:0 15:25:07 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:25:07 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:401 calls_made:1 call_cycle:0 15:25:07 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:25:07 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:401 calls_made:1 call_cycle:0 15:25:07 17 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:401 calls_made:1 call_cycle:0 2243.9440 -15800.4620 03/17/17 15:19:49 UTC) to sdrifter@soest.hawaii.edu 15:25:07 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:401 calls_made:1 call_cycle:0 15:25:07 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:25:07 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:401 calls_made:1 call_cycle:0 15:25:07 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:25:07 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:401 calls_made:1 call_cycle:0 15:25:07 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:25:07 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:401 calls_made:1 call_cycle:0 15:25:07 17 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:25:07 17 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 15:25:14 17 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 15:25:15 17 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 15:25:15 17 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 15:25:15 17 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 15:25:15 17 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 15:25:15 17 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 15:25:17 17 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0401lz 15:25:17 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0401lz.x00 15:25:17 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0401lz.x01 15:25:17 17 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0401lz.r in process_file_group 15:25:17 17 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260401.log 15:25:17 17 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 15:25:17 17 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0401dz 15:25:17 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0401dz.x00 15:25:17 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0401dz.x01 15:25:17 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0401dz.x02 15:25:17 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0401dz.x03 15:25:17 17 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0401dz.r in process_file_group 15:25:18 17 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [401] 15:25:18 17 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [401] 15:25:18 17 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260401) for profiles 15:25:18 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 15:25:18 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/623) 622 to QC_BAD because CT out of water 15:25:18 17 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.048m) 15:25:18 17 Mar 2017 UTC: INFO: QC.py(365): Changed (2/623) 2 622 to QC_PROBABLY_BAD because raw temperature spikes 15:25:18 17 Mar 2017 UTC: INFO: QC.py(377): Changed (1/623) 622 to QC_BAD because raw salinity below bound 15:25:18 17 Mar 2017 UTC: INFO: QC.py(180): Changed (1/623) 2 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 15:25:18 17 Mar 2017 UTC: INFO: QC.py(365): Changed (2/623) 2 622 to QC_INTERPOLATED because temperature spikes 15:25:18 17 Mar 2017 UTC: INFO: QC.py(377): Changed (1/623) 622 to QC_BAD because salinity below bound 15:25:18 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/623) 253:257 to QC_BAD because slow apogee CT flow 15:25:18 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/623) 1:6 to QC_BAD because prior to dive start 15:25:18 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/623) 621 623 to QC_BAD because end of climb 15:25:18 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/623) 1:6 253:257 621:623 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 15:25:18 17 Mar 2017 UTC: INFO: QC.py(180): Changed (14/623) 1:6 253:257 621:623 to QC_BAD because changed corrected salin implies changed speed 15:25:19 17 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 15:25:19 17 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 401 interp_salinity data_points in_between 356 386 % suspect thermal-inertia points 385 386 15:25:19 17 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 401 interp_salinity data_points in_between 388 396 % suspect thermal-inertia points 389:396 15:25:19 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.71 cm/s 15:25:19 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.51 cm/s 15:25:19 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 15:25:19 17 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (197/623) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 15:25:19 17 Mar 2017 UTC: INFO: QC.py(180): Changed (2/623) 2 622 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 15:25:19 17 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (197/623) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 15:25:19 17 Mar 2017 UTC: INFO: QC.py(180): Changed (2/623) 2 622 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 15:25:19 17 Mar 2017 UTC: INFO: QC.py(180): Changed (14/623) 1:6 253:257 621:623 to QC_BAD because changed salinity implies changed optode oxygen 15:25:19 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 15:25:19 17 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 15:25:19 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 15:25:19 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 401: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.25% reduction 15:25:19 17 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.401 15:25:19 17 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 15:25:19 17 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 15:25:19 17 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 15:25:20 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 15:25:20 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 15:28:38 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 15:28:39 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 15:28:39 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 15:29:20 17 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 15:29:20 17 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 15:29:20 17 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 15:29:20 17 Mar 2017 UTC /home/sg626/p6260401.log /home/sg626/p6260401.eng /home/sg626/p6260401.asc /home/sg626/p6260401.pro /home/sg626/p6260401.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 15:29:20 17 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 15:29:20 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:29:20 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:29:20 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:29:20 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:29:20 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:29:20 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:29:20 17 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:29:20 17 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 15:29:20 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:29:20 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:29:20 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:29:20 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:29:20 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:29:20 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:29:20 17 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:29:20 17 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 15:29:20 17 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 15:29:20 17 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 15:29:20 17 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 15:29:20 17 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 15:29:20 17 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 15:29:20 17 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 15:29:20 17 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 15:29:20 17 Mar 2017 UTC 18:59:12 17 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 6052 18:59:12 17 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:02:03 17 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 6432 19:02:03 17 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:02:03 17 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:02:03 17 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:02:03 17 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:02:03 17 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170317090202 ] 19:02:03 17 Mar 2017 UTC: INFO: Base.py(1333): PID:6439 19:02:03 17 Mar 2017 UTC: INFO: Base.py(1375): Started processing 19:02:03 17 Mar 2017 UTC 19:02:03 17 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:02:04 17 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:02:04 17 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:02:04 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:02:04 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:402 calls_made:1 call_cycle:0 19:02:04 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:02:04 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:402 calls_made:1 call_cycle:0 19:02:04 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:02:04 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:402 calls_made:1 call_cycle:0 19:02:04 17 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:402 calls_made:1 call_cycle:0 2244.4690 -15759.6290 03/17/17 18:56:59 UTC) to sdrifter@soest.hawaii.edu 19:02:04 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:402 calls_made:1 call_cycle:0 19:02:04 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:02:04 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:402 calls_made:1 call_cycle:0 19:02:04 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:02:04 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:402 calls_made:1 call_cycle:0 19:02:04 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:02:04 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:402 calls_made:1 call_cycle:0 19:02:04 17 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:02:04 17 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:02:10 17 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:02:11 17 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:02:11 17 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:02:11 17 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:02:11 17 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:02:11 17 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:02:14 17 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0402lz 19:02:14 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0402lz.x00 19:02:14 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0402lz.x01 19:02:14 17 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0402lz.r in process_file_group 19:02:14 17 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260402.log 19:02:14 17 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:02:14 17 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0402dz 19:02:14 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0402dz.x00 19:02:14 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0402dz.x01 19:02:14 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0402dz.x02 19:02:14 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0402dz.x03 19:02:14 17 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0402dz.r in process_file_group 19:02:14 17 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [402] 19:02:14 17 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [402] 19:02:14 17 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260402) for profiles 19:02:14 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 19:02:15 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/649) 648 649 to QC_BAD because CT out of water 19:02:15 17 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.155m) 19:02:15 17 Mar 2017 UTC: INFO: QC.py(365): Changed (2/649) 5 648 to QC_PROBABLY_BAD because raw temperature spikes 19:02:15 17 Mar 2017 UTC: INFO: QC.py(377): Changed (2/649) 648 649 to QC_BAD because raw salinity below bound 19:02:15 17 Mar 2017 UTC: INFO: QC.py(180): Changed (1/649) 5 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:02:15 17 Mar 2017 UTC: INFO: QC.py(365): Changed (2/649) 5 648 to QC_INTERPOLATED because temperature spikes 19:02:15 17 Mar 2017 UTC: INFO: QC.py(377): Changed (2/649) 648 649 to QC_BAD because salinity below bound 19:02:15 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/649) 248:252 to QC_BAD because slow apogee CT flow 19:02:15 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/649) 1:6 to QC_BAD because prior to dive start 19:02:15 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/649) 1:6 248:252 648 649 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:02:15 17 Mar 2017 UTC: INFO: QC.py(180): Changed (13/649) 1:6 248:252 648 649 to QC_BAD because changed corrected salin implies changed speed 19:02:15 17 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:02:15 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.13 cm/s 19:02:15 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.29 cm/s 19:02:15 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:02:15 17 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (184/649) 139 140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:02:15 17 Mar 2017 UTC: INFO: QC.py(180): Changed (2/649) 5 648 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 19:02:15 17 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (184/649) 139 140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 19:02:15 17 Mar 2017 UTC: INFO: QC.py(180): Changed (2/649) 5 648 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 19:02:15 17 Mar 2017 UTC: INFO: QC.py(180): Changed (13/649) 1:6 248:252 648 649 to QC_BAD because changed salinity implies changed optode oxygen 19:02:15 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:02:15 17 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:02:15 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 19:02:16 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 402: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.00% reduction 19:02:16 17 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.402 19:02:16 17 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:02:16 17 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:02:16 17 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:02:16 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 19:02:16 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 19:05:35 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 19:05:36 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 19:05:36 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 19:06:17 17 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:06:17 17 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:06:17 17 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:06:17 17 Mar 2017 UTC /home/sg626/p6260402.log /home/sg626/p6260402.eng /home/sg626/p6260402.asc /home/sg626/p6260402.pro /home/sg626/p6260402.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 19:06:17 17 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:06:17 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:06:17 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:06:17 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:06:17 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:06:17 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:06:17 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:06:17 17 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:06:17 17 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:06:17 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:06:17 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:06:17 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:06:17 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:06:17 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:06:17 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:06:17 17 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:06:17 17 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:06:17 17 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:06:17 17 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:06:17 17 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:06:17 17 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:06:17 17 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:06:17 17 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:06:17 17 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 19:06:17 17 Mar 2017 UTC 22:20:09 17 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 11696 22:20:09 17 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:23:02 17 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 11823 22:23:02 17 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:23:02 17 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:23:02 17 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:23:02 17 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:23:02 17 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170317122301 ] 22:23:02 17 Mar 2017 UTC: INFO: Base.py(1333): PID:11831 22:23:02 17 Mar 2017 UTC: INFO: Base.py(1375): Started processing 22:23:02 17 Mar 2017 UTC 22:23:02 17 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:23:03 17 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:23:03 17 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:23:03 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:23:03 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:403 calls_made:1 call_cycle:0 22:23:03 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:23:03 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:403 calls_made:1 call_cycle:0 22:23:03 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:23:03 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:403 calls_made:1 call_cycle:0 22:23:03 17 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:403 calls_made:1 call_cycle:0 2243.8660 -15800.8860 03/17/17 22:17:54 UTC) to sdrifter@soest.hawaii.edu 22:23:03 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:403 calls_made:1 call_cycle:0 22:23:03 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:23:03 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:403 calls_made:1 call_cycle:0 22:23:03 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:23:03 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:403 calls_made:1 call_cycle:0 22:23:03 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:23:03 17 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:403 calls_made:1 call_cycle:0 22:23:03 17 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:23:03 17 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:23:09 17 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:23:10 17 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:23:10 17 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:23:10 17 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:23:10 17 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:23:10 17 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:23:13 17 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0403lz 22:23:13 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0403lz.x00 22:23:13 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0403lz.x01 22:23:13 17 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0403lz.r in process_file_group 22:23:13 17 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260403.log 22:23:13 17 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 22:23:13 17 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0403dz 22:23:13 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0403dz.x00 22:23:13 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0403dz.x01 22:23:13 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0403dz.x02 22:23:13 17 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0403dz.x03 22:23:13 17 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0403dz.r in process_file_group 22:23:13 17 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [403] 22:23:13 17 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [403] 22:23:14 17 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260403) for profiles 22:23:14 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 22:23:14 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/634) 632 633 to QC_BAD because CT out of water 22:23:14 17 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.122m) 22:23:14 17 Mar 2017 UTC: INFO: QC.py(365): Changed (2/634) 4 633 to QC_PROBABLY_BAD because raw temperature spikes 22:23:14 17 Mar 2017 UTC: INFO: QC.py(180): Changed (2/634) 4 633 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 22:23:14 17 Mar 2017 UTC: INFO: QC.py(180): Changed (2/634) 632 633 to QC_BAD because changed raw cond implies changed raw salinity 22:23:14 17 Mar 2017 UTC: INFO: QC.py(365): Changed (2/634) 4 633 to QC_INTERPOLATED because temperature spikes 22:23:14 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/634) 243:247 to QC_BAD because slow apogee CT flow 22:23:14 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/634) 1:6 to QC_BAD because prior to dive start 22:23:14 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/634) 631 634 to QC_BAD because end of climb 22:23:14 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/634) 1:6 243:247 631:634 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:23:14 17 Mar 2017 UTC: INFO: QC.py(180): Changed (15/634) 1:6 243:247 631:634 to QC_BAD because changed corrected salin implies changed speed 22:23:14 17 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:23:14 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.27 cm/s 22:23:14 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.44 cm/s 22:23:14 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:23:14 17 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (165/634) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:23:14 17 Mar 2017 UTC: INFO: QC.py(180): Changed (2/634) 4 633 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 22:23:14 17 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (165/634) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 22:23:14 17 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (5/634) 625 626 628 632 634 to QC_BAD because bad aa4330 oyxgen 22:23:14 17 Mar 2017 UTC: INFO: QC.py(180): Changed (2/634) 4 633 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 22:23:14 17 Mar 2017 UTC: INFO: QC.py(180): Changed (13/634) 1:6 243:247 631 633 to QC_BAD because changed salinity implies changed optode oxygen 22:23:14 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:23:14 17 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 22:23:14 17 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 22:23:15 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 403: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.37% reduction 22:23:15 17 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.403 22:23:15 17 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:23:15 17 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:23:15 17 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:23:15 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 22:23:15 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 22:26:37 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 22:26:39 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 22:26:39 17 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 22:27:19 17 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:27:19 17 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:27:19 17 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:27:19 17 Mar 2017 UTC /home/sg626/p6260403.log /home/sg626/p6260403.eng /home/sg626/p6260403.asc /home/sg626/p6260403.pro /home/sg626/p6260403.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 22:27:19 17 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:27:19 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:27:19 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:27:19 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:27:19 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:27:19 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:27:19 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:27:19 17 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:27:19 17 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:27:19 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:27:19 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:27:19 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:27:19 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:27:19 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:27:19 17 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:27:19 17 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:27:19 17 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:27:19 17 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:27:19 17 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:27:19 17 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:27:19 17 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:27:19 17 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:27:19 17 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:27:19 17 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 22:27:19 17 Mar 2017 UTC 01:52:02 18 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 17279 01:52:02 18 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:54:54 18 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 17400 01:54:54 18 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:54:54 18 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:54:54 18 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:54:54 18 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:54:54 18 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170317155454 ] 01:54:54 18 Mar 2017 UTC: INFO: Base.py(1333): PID:17408 01:54:55 18 Mar 2017 UTC: INFO: Base.py(1375): Started processing 01:54:55 18 Mar 2017 UTC 01:54:55 18 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:54:56 18 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:54:56 18 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:54:56 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:54:56 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:404 calls_made:1 call_cycle:0 01:54:56 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:54:56 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:404 calls_made:1 call_cycle:0 01:54:56 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:54:56 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:404 calls_made:1 call_cycle:0 01:54:56 18 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:404 calls_made:1 call_cycle:0 2243.8970 -15759.6720 03/18/17 01:49:49 UTC) to sdrifter@soest.hawaii.edu 01:54:56 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:404 calls_made:1 call_cycle:0 01:54:56 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:54:56 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:404 calls_made:1 call_cycle:0 01:54:56 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:54:56 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:404 calls_made:1 call_cycle:0 01:54:56 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:54:56 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:404 calls_made:1 call_cycle:0 01:54:56 18 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:54:56 18 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:55:02 18 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:55:03 18 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:55:03 18 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:55:03 18 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:55:03 18 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:55:03 18 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:55:06 18 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0404lz 01:55:06 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0404lz.x00 01:55:06 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0404lz.x01 01:55:06 18 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0404lz.r in process_file_group 01:55:06 18 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260404.log 01:55:06 18 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:55:06 18 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0404dz 01:55:06 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0404dz.x00 01:55:06 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0404dz.x01 01:55:06 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0404dz.x02 01:55:06 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0404dz.x03 01:55:06 18 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0404dz.r in process_file_group 01:55:06 18 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [404] 01:55:06 18 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [404] 01:55:07 18 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260404) for profiles 01:55:07 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:55:07 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/642) 641 642 to QC_BAD because CT out of water 01:55:07 18 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.111m) 01:55:07 18 Mar 2017 UTC: INFO: QC.py(365): Changed (4/642) 2 639:641 to QC_PROBABLY_BAD because raw temperature spikes 01:55:07 18 Mar 2017 UTC: INFO: QC.py(180): Changed (4/642) 2 639:641 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:55:07 18 Mar 2017 UTC: INFO: QC.py(180): Changed (2/642) 641 642 to QC_BAD because changed raw cond implies changed raw salinity 01:55:07 18 Mar 2017 UTC: INFO: QC.py(365): Changed (4/642) 2 639:641 to QC_INTERPOLATED because temperature spikes 01:55:07 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/642) 243:247 to QC_BAD because slow apogee CT flow 01:55:07 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/642) 1:6 to QC_BAD because prior to dive start 01:55:07 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/642) 1:6 243:247 641 642 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:55:07 18 Mar 2017 UTC: INFO: QC.py(180): Changed (13/642) 1:6 243:247 641 642 to QC_BAD because changed corrected salin implies changed speed 01:55:07 18 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:55:07 18 Mar 2017 UTC: INFO: QC.py(180): Changed (2/642) 639 640 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 01:55:07 18 Mar 2017 UTC: INFO: QC.py(180): Changed (2/642) 639 640 to QC_INTERPOLATED because changed corrected temp implies changed speed 01:55:07 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.46 cm/s 01:55:07 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.09 cm/s 01:55:07 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:55:07 18 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (177/642) 139 140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:55:07 18 Mar 2017 UTC: INFO: QC.py(180): Changed (4/642) 2 639:641 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 01:55:07 18 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (177/642) 139 140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 01:55:07 18 Mar 2017 UTC: INFO: QC.py(180): Changed (4/642) 2 639:641 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 01:55:07 18 Mar 2017 UTC: INFO: QC.py(180): Changed (13/642) 1:6 243:247 641 642 to QC_BAD because changed salinity implies changed optode oxygen 01:55:07 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:55:07 18 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:55:07 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:55:08 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 404: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.02% reduction 01:55:08 18 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.404 01:55:08 18 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:55:08 18 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:55:08 18 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:55:08 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:55:08 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 01:58:30 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 01:58:32 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 01:58:32 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 01:59:13 18 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:59:13 18 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:59:13 18 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:59:13 18 Mar 2017 UTC /home/sg626/p6260404.log /home/sg626/p6260404.eng /home/sg626/p6260404.asc /home/sg626/p6260404.pro /home/sg626/p6260404.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 01:59:13 18 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:59:13 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:59:13 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:59:13 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:59:13 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:59:13 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:59:13 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:59:13 18 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:59:13 18 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:59:13 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:59:13 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:59:13 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:59:13 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:59:13 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:59:13 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:59:13 18 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:59:13 18 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:59:13 18 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:59:13 18 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:59:13 18 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:59:13 18 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:59:13 18 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:59:13 18 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:59:13 18 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 01:59:13 18 Mar 2017 UTC 05:35:31 18 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 23621 05:35:31 18 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:38:28 18 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 23784 05:38:28 18 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:38:28 18 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:38:28 18 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:38:28 18 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:38:28 18 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170317193827 ] 05:38:28 18 Mar 2017 UTC: INFO: Base.py(1333): PID:23791 05:38:28 18 Mar 2017 UTC: INFO: Base.py(1375): Started processing 05:38:28 18 Mar 2017 UTC 05:38:28 18 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:38:29 18 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:38:29 18 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:38:29 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:38:29 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:405 calls_made:1 call_cycle:0 05:38:29 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:38:29 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:405 calls_made:1 call_cycle:0 05:38:29 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:38:29 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:405 calls_made:1 call_cycle:0 05:38:29 18 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:405 calls_made:1 call_cycle:0 2244.3480 -15800.2700 03/18/17 05:33:18 UTC) to sdrifter@soest.hawaii.edu 05:38:29 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:405 calls_made:1 call_cycle:0 05:38:29 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:38:29 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:405 calls_made:1 call_cycle:0 05:38:29 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:38:29 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:405 calls_made:1 call_cycle:0 05:38:29 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:38:29 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:405 calls_made:1 call_cycle:0 05:38:29 18 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:38:29 18 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:38:36 18 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:38:37 18 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:38:37 18 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:38:37 18 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:38:37 18 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:38:37 18 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:38:40 18 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0405lz 05:38:40 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0405lz.x00 05:38:40 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0405lz.x01 05:38:40 18 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0405lz.r in process_file_group 05:38:40 18 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260405.log 05:38:40 18 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:38:40 18 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0405dz 05:38:40 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0405dz.x00 05:38:40 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0405dz.x01 05:38:40 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0405dz.x02 05:38:40 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0405dz.x03 05:38:40 18 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0405dz.r in process_file_group 05:38:40 18 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [405] 05:38:40 18 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [405] 05:38:40 18 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260405) for profiles 05:38:40 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:38:40 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/656) 654:656 to QC_BAD because CT out of water 05:38:40 18 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.116m) 05:38:40 18 Mar 2017 UTC: INFO: QC.py(365): Changed (5/656) 2 3 238 256 654 to QC_PROBABLY_BAD because raw temperature spikes 05:38:40 18 Mar 2017 UTC: INFO: QC.py(408): Changed (1/656) 256 to QC_PROBABLY_BAD because raw conductivity spikes 05:38:40 18 Mar 2017 UTC: INFO: QC.py(180): Changed (5/656) 2 3 238 256 654 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:38:40 18 Mar 2017 UTC: INFO: QC.py(180): Changed (3/656) 654:656 to QC_BAD because changed raw cond implies changed raw salinity 05:38:40 18 Mar 2017 UTC: INFO: QC.py(365): Changed (5/656) 2 3 238 256 654 to QC_INTERPOLATED because temperature spikes 05:38:40 18 Mar 2017 UTC: INFO: QC.py(408): Changed (1/656) 256 to QC_INTERPOLATED because conductivity spikes 05:38:40 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/656) 242:246 to QC_BAD because slow apogee CT flow 05:38:40 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/656) 1:6 to QC_BAD because prior to dive start 05:38:40 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/656) 652 653 to QC_BAD because end of climb 05:38:40 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/656) 1:6 242:246 652:656 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:38:40 18 Mar 2017 UTC: INFO: QC.py(180): Changed (16/656) 1:6 242:246 652:656 to QC_BAD because changed corrected salin implies changed speed 05:38:41 18 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:38:41 18 Mar 2017 UTC: INFO: QC.py(180): Changed (2/656) 238 256 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 05:38:41 18 Mar 2017 UTC: INFO: QC.py(180): Changed (2/656) 238 256 to QC_INTERPOLATED because changed corrected temp implies changed speed 05:38:41 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.61 cm/s 05:38:41 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.48 cm/s 05:38:41 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:38:41 18 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (194/656) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:38:41 18 Mar 2017 UTC: INFO: QC.py(180): Changed (4/656) 2 3 256 654 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:38:41 18 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (194/656) 129 130 132:135 137:140 142:145 147:150 152:155 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:38:41 18 Mar 2017 UTC: INFO: QC.py(180): Changed (4/656) 2 3 256 654 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:38:41 18 Mar 2017 UTC: INFO: QC.py(180): Changed (16/656) 1:6 242:246 652:656 to QC_BAD because changed salinity implies changed optode oxygen 05:38:41 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:38:41 18 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:38:41 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 05:38:41 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 405: Data set size for profile, binned and kkyy files reduced by 16 points, a 2.44% reduction 05:38:41 18 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.405 05:38:41 18 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:38:41 18 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:38:41 18 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:38:42 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 05:38:42 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 05:42:03 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 05:42:04 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 05:42:04 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 05:42:45 18 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:42:45 18 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:42:45 18 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:42:45 18 Mar 2017 UTC /home/sg626/p6260405.log /home/sg626/p6260405.eng /home/sg626/p6260405.asc /home/sg626/p6260405.pro /home/sg626/p6260405.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 05:42:45 18 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:42:45 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:42:45 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:42:45 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:42:45 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:42:45 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:42:45 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:42:45 18 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:42:45 18 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:42:45 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:42:45 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:42:45 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:42:45 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:42:45 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:42:45 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:42:45 18 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:42:45 18 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:42:45 18 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:42:45 18 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:42:45 18 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:42:45 18 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:42:45 18 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:42:45 18 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:42:45 18 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 05:42:45 18 Mar 2017 UTC 09:15:56 18 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 29455 09:15:57 18 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:19:04 18 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 29583 09:19:04 18 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:19:04 18 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:19:04 18 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:19:04 18 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:19:04 18 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170317231903 ] 09:19:04 18 Mar 2017 UTC: INFO: Base.py(1333): PID:29590 09:19:04 18 Mar 2017 UTC: INFO: Base.py(1375): Started processing 09:19:04 18 Mar 2017 UTC 09:19:04 18 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:19:05 18 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:19:05 18 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:19:05 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:19:05 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:406 calls_made:1 call_cycle:0 09:19:05 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:19:05 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:406 calls_made:1 call_cycle:0 09:19:05 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:19:05 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:406 calls_made:1 call_cycle:0 09:19:05 18 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:406 calls_made:1 call_cycle:0 2244.7230 -15758.9820 03/18/17 09:13:42 UTC) to sdrifter@soest.hawaii.edu 09:19:05 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:406 calls_made:1 call_cycle:0 09:19:05 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:19:05 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:406 calls_made:1 call_cycle:0 09:19:05 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:19:05 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:406 calls_made:1 call_cycle:0 09:19:05 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:19:05 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:406 calls_made:1 call_cycle:0 09:19:05 18 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:19:05 18 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:19:11 18 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:19:13 18 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:19:13 18 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:19:13 18 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:19:13 18 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:19:13 18 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:19:15 18 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0406lz 09:19:15 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0406lz.x00 09:19:15 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0406lz.x01 09:19:15 18 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0406lz.r in process_file_group 09:19:15 18 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260406.log 09:19:15 18 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:19:15 18 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0406dz 09:19:15 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0406dz.x00 09:19:15 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0406dz.x01 09:19:15 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0406dz.x02 09:19:15 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0406dz.x03 09:19:15 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0406dz.x04 09:19:15 18 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0406dz.r in process_file_group 09:19:16 18 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [406] 09:19:16 18 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [406] 09:19:16 18 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260406) for profiles 09:19:16 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 09:19:16 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/665) 664 665 to QC_BAD because CT out of water 09:19:16 18 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.142m) 09:19:16 18 Mar 2017 UTC: INFO: QC.py(365): Changed (3/665) 2 246 248 to QC_PROBABLY_BAD because raw temperature spikes 09:19:16 18 Mar 2017 UTC: INFO: QC.py(408): Changed (1/665) 248 to QC_PROBABLY_BAD because raw conductivity spikes 09:19:16 18 Mar 2017 UTC: INFO: QC.py(180): Changed (3/665) 2 246 248 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 09:19:16 18 Mar 2017 UTC: INFO: QC.py(180): Changed (2/665) 664 665 to QC_BAD because changed raw cond implies changed raw salinity 09:19:16 18 Mar 2017 UTC: INFO: QC.py(365): Changed (3/665) 2 246 248 to QC_INTERPOLATED because temperature spikes 09:19:16 18 Mar 2017 UTC: INFO: QC.py(408): Changed (1/665) 248 to QC_INTERPOLATED because conductivity spikes 09:19:16 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/665) 246:250 to QC_BAD because slow apogee CT flow 09:19:16 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/665) 1:6 to QC_BAD because prior to dive start 09:19:16 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/665) 663 to QC_BAD because end of climb 09:19:16 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/665) 1:6 246:250 663:665 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:19:16 18 Mar 2017 UTC: INFO: QC.py(180): Changed (14/665) 1:6 246:250 663:665 to QC_BAD because changed corrected salin implies changed speed 09:19:17 18 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:19:17 18 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 406 interp_salinity data_points in_between 340 376 % suspect thermal-inertia points 375 376 09:19:17 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.67 cm/s 09:19:17 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.45 cm/s 09:19:17 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:19:17 18 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (191/665) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:19:17 18 Mar 2017 UTC: INFO: QC.py(180): Changed (2/665) 2 246 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:19:17 18 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (191/665) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 09:19:17 18 Mar 2017 UTC: INFO: QC.py(180): Changed (2/665) 2 246 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:19:17 18 Mar 2017 UTC: INFO: QC.py(180): Changed (14/665) 1:6 246:250 663:665 to QC_BAD because changed salinity implies changed optode oxygen 09:19:17 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:19:17 18 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:19:17 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 09:19:17 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 406: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.11% reduction 09:19:17 18 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.406 09:19:17 18 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:19:17 18 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:19:17 18 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:19:17 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 09:19:17 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 09:22:39 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 09:22:40 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 09:22:40 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 09:23:21 18 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:23:21 18 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:23:21 18 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:23:21 18 Mar 2017 UTC /home/sg626/p6260406.log /home/sg626/p6260406.eng /home/sg626/p6260406.asc /home/sg626/p6260406.pro /home/sg626/p6260406.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 09:23:21 18 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:23:21 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:23:21 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:23:21 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:23:21 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:23:21 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:23:21 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:23:21 18 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:23:21 18 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:23:21 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:23:21 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:23:21 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:23:21 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:23:21 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:23:21 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:23:21 18 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:23:21 18 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:23:21 18 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:23:21 18 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:23:21 18 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:23:21 18 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:23:21 18 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:23:21 18 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:23:21 18 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 09:23:21 18 Mar 2017 UTC 12:58:44 18 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 3226 12:58:44 18 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:01:42 18 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 3680 13:01:42 18 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:01:42 18 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:01:42 18 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:01:42 18 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:01:42 18 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170318030141 ] 13:01:42 18 Mar 2017 UTC: INFO: Base.py(1333): PID:3687 13:01:42 18 Mar 2017 UTC: INFO: Base.py(1375): Started processing 13:01:42 18 Mar 2017 UTC 13:01:42 18 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:01:43 18 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:01:43 18 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:01:43 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:01:43 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:407 calls_made:1 call_cycle:0 13:01:43 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:01:43 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:407 calls_made:1 call_cycle:0 13:01:43 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:01:43 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:407 calls_made:1 call_cycle:0 13:01:43 18 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:407 calls_made:1 call_cycle:0 2243.6710 -15800.2160 03/18/17 12:56:30 UTC) to sdrifter@soest.hawaii.edu 13:01:43 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:407 calls_made:1 call_cycle:0 13:01:43 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:01:43 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:407 calls_made:1 call_cycle:0 13:01:43 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:01:43 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:407 calls_made:1 call_cycle:0 13:01:43 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:01:43 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:407 calls_made:1 call_cycle:0 13:01:43 18 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:01:43 18 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:01:50 18 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:01:51 18 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:01:51 18 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:01:51 18 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:01:51 18 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:01:51 18 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:01:53 18 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0407lz 13:01:53 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0407lz.x00 13:01:53 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0407lz.x01 13:01:53 18 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0407lz.r in process_file_group 13:01:53 18 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260407.log 13:01:53 18 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:01:53 18 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0407dz 13:01:53 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0407dz.x00 13:01:53 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0407dz.x01 13:01:53 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0407dz.x02 13:01:53 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0407dz.x03 13:01:53 18 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0407dz.r in process_file_group 13:01:54 18 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [407] 13:01:54 18 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [407] 13:01:54 18 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260407) for profiles 13:01:54 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:01:54 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/648) 648 to QC_BAD because CT out of water 13:01:54 18 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.083m) 13:01:54 18 Mar 2017 UTC: INFO: QC.py(365): Changed (2/648) 209 647 to QC_PROBABLY_BAD because raw temperature spikes 13:01:54 18 Mar 2017 UTC: INFO: QC.py(408): Changed (2/648) 209 243 to QC_PROBABLY_BAD because raw conductivity spikes 13:01:54 18 Mar 2017 UTC: INFO: QC.py(180): Changed (2/648) 209 647 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:01:54 18 Mar 2017 UTC: INFO: QC.py(180): Changed (1/648) 243 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 13:01:54 18 Mar 2017 UTC: INFO: QC.py(180): Changed (1/648) 648 to QC_BAD because changed raw cond implies changed raw salinity 13:01:54 18 Mar 2017 UTC: INFO: QC.py(365): Changed (2/648) 209 647 to QC_INTERPOLATED because temperature spikes 13:01:54 18 Mar 2017 UTC: INFO: QC.py(408): Changed (2/648) 209 243 to QC_INTERPOLATED because conductivity spikes 13:01:54 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/648) 248:252 to QC_BAD because slow apogee CT flow 13:01:54 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/648) 1:6 to QC_BAD because prior to dive start 13:01:54 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/648) 1:6 248:252 648 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:01:54 18 Mar 2017 UTC: INFO: QC.py(180): Changed (12/648) 1:6 248:252 648 to QC_BAD because changed corrected salin implies changed speed 13:01:55 18 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:01:55 18 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 407 interp_salinity data_points in_between 397 404 % suspect thermal-inertia points 398:400 13:01:55 18 Mar 2017 UTC: INFO: QC.py(180): Changed (2/648) 209 647 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 13:01:55 18 Mar 2017 UTC: INFO: QC.py(180): Changed (1/648) 243 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 13:01:55 18 Mar 2017 UTC: INFO: QC.py(180): Changed (2/648) 209 647 to QC_INTERPOLATED because changed corrected temp implies changed speed 13:01:55 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.61 cm/s 13:01:55 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.44 cm/s 13:01:55 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:01:55 18 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (194/648) 134 135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:01:55 18 Mar 2017 UTC: INFO: QC.py(180): Changed (1/648) 647 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:01:55 18 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (194/648) 134 135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:01:55 18 Mar 2017 UTC: INFO: QC.py(180): Changed (1/648) 647 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:01:55 18 Mar 2017 UTC: INFO: QC.py(180): Changed (12/648) 1:6 248:252 648 to QC_BAD because changed salinity implies changed optode oxygen 13:01:55 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:01:55 18 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:01:55 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:01:55 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 407: Data set size for profile, binned and kkyy files reduced by 12 points, a 1.85% reduction 13:01:55 18 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.407 13:01:55 18 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:01:55 18 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:01:55 18 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:01:56 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:01:56 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:05:19 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 13:05:21 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:05:21 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:06:02 18 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:06:02 18 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:06:02 18 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:06:02 18 Mar 2017 UTC /home/sg626/p6260407.log /home/sg626/p6260407.eng /home/sg626/p6260407.asc /home/sg626/p6260407.pro /home/sg626/p6260407.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:06:02 18 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:06:02 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:06:02 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:06:02 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:06:02 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:06:02 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:06:02 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:06:02 18 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:06:02 18 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:06:02 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:06:02 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:06:02 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:06:02 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:06:02 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:06:02 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:06:02 18 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:06:02 18 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:06:02 18 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:06:02 18 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:06:02 18 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:06:02 18 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:06:02 18 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:06:02 18 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:06:02 18 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 13:06:02 18 Mar 2017 UTC 16:46:35 18 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9915 16:46:35 18 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:49:48 18 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 10043 16:49:48 18 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:49:48 18 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:49:48 18 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:49:48 18 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:49:48 18 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170318064947 ] 16:49:48 18 Mar 2017 UTC: INFO: Base.py(1333): PID:10050 16:49:48 18 Mar 2017 UTC: INFO: Base.py(1375): Started processing 16:49:48 18 Mar 2017 UTC 16:49:48 18 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:49:49 18 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:49:49 18 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:49:49 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:49:49 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:408 calls_made:1 call_cycle:0 16:49:49 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:49:49 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:408 calls_made:1 call_cycle:0 16:49:49 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:49:49 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:408 calls_made:1 call_cycle:0 16:49:49 18 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:408 calls_made:1 call_cycle:0 2244.4930 -15759.9290 03/18/17 16:44:25 UTC) to sdrifter@soest.hawaii.edu 16:49:49 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:408 calls_made:1 call_cycle:0 16:49:49 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:49:49 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:408 calls_made:1 call_cycle:0 16:49:49 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:49:49 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:408 calls_made:1 call_cycle:0 16:49:49 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:49:49 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:408 calls_made:1 call_cycle:0 16:49:49 18 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:49:49 18 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:49:55 18 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:49:56 18 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:49:56 18 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:49:56 18 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:49:56 18 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:49:56 18 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:49:59 18 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0408lz 16:49:59 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0408lz.x00 16:49:59 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0408lz.x01 16:49:59 18 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0408lz.r in process_file_group 16:49:59 18 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260408.log 16:49:59 18 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:49:59 18 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0408dz 16:49:59 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0408dz.x00 16:49:59 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0408dz.x01 16:49:59 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0408dz.x02 16:49:59 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0408dz.x03 16:49:59 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0408dz.x04 16:49:59 18 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0408dz.r in process_file_group 16:50:00 18 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [408] 16:50:00 18 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [408] 16:50:00 18 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260408) for profiles 16:50:00 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:50:00 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/684) 684 to QC_BAD because CT out of water 16:50:00 18 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.053m) 16:50:00 18 Mar 2017 UTC: INFO: QC.py(365): Changed (7/684) 2 3 212 213 238 250 683 to QC_PROBABLY_BAD because raw temperature spikes 16:50:00 18 Mar 2017 UTC: INFO: QC.py(408): Changed (4/684) 212 213 238 250 to QC_PROBABLY_BAD because raw conductivity spikes 16:50:00 18 Mar 2017 UTC: INFO: QC.py(180): Changed (7/684) 2 3 212 213 238 250 683 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:50:00 18 Mar 2017 UTC: INFO: QC.py(180): Changed (1/684) 684 to QC_BAD because changed raw cond implies changed raw salinity 16:50:00 18 Mar 2017 UTC: INFO: QC.py(365): Changed (7/684) 2 3 212 213 238 250 683 to QC_INTERPOLATED because temperature spikes 16:50:00 18 Mar 2017 UTC: INFO: QC.py(408): Changed (4/684) 212 213 238 250 to QC_INTERPOLATED because conductivity spikes 16:50:00 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/684) 255:259 to QC_BAD because slow apogee CT flow 16:50:00 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/684) 1:6 to QC_BAD because prior to dive start 16:50:00 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/684) 682 683 to QC_BAD because end of climb 16:50:00 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/684) 1:6 255:259 682:684 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:50:00 18 Mar 2017 UTC: INFO: QC.py(180): Changed (14/684) 1:6 255:259 682:684 to QC_BAD because changed corrected salin implies changed speed 16:50:01 18 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:50:01 18 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 408 interp_salinity data_points in_between 402 416 % suspect thermal-inertia points 405 406 16:50:01 18 Mar 2017 UTC: INFO: QC.py(180): Changed (4/684) 212 213 238 250 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 16:50:01 18 Mar 2017 UTC: INFO: QC.py(180): Changed (4/684) 212 213 238 250 to QC_INTERPOLATED because changed corrected temp implies changed speed 16:50:01 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.38 cm/s 16:50:01 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.62 cm/s 16:50:01 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:50:01 18 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (195/684) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:50:01 18 Mar 2017 UTC: INFO: QC.py(180): Changed (3/684) 2 3 683 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:50:01 18 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (195/684) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:50:01 18 Mar 2017 UTC: INFO: QC.py(180): Changed (3/684) 2 3 683 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:50:01 18 Mar 2017 UTC: INFO: QC.py(180): Changed (14/684) 1:6 255:259 682:684 to QC_BAD because changed salinity implies changed optode oxygen 16:50:01 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:50:01 18 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:50:01 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:50:01 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 408: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.05% reduction 16:50:01 18 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.408 16:50:01 18 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:50:01 18 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:50:01 18 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:50:01 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:50:01 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:53:26 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 16:53:27 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:53:27 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:54:08 18 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:54:08 18 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:54:08 18 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:54:08 18 Mar 2017 UTC /home/sg626/p6260408.log /home/sg626/p6260408.eng /home/sg626/p6260408.asc /home/sg626/p6260408.pro /home/sg626/p6260408.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:54:08 18 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:54:08 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:54:08 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:54:08 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:54:08 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:54:08 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:54:08 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:54:08 18 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:54:08 18 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:54:08 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:54:08 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:54:08 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:54:08 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:54:08 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:54:08 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:54:08 18 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:54:08 18 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:54:08 18 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:54:08 18 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:54:08 18 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:54:08 18 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:54:08 18 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:54:08 18 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:54:08 18 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 16:54:08 18 Mar 2017 UTC 20:28:20 18 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 18401 20:28:20 18 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 20:31:35 18 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 18667 20:31:35 18 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:31:35 18 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:31:35 18 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:31:35 18 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:31:35 18 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170318103135 ] 20:31:35 18 Mar 2017 UTC: INFO: Base.py(1333): PID:18675 20:31:35 18 Mar 2017 UTC: INFO: Base.py(1375): Started processing 20:31:35 18 Mar 2017 UTC 20:31:35 18 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:31:37 18 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:31:37 18 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:31:37 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:31:37 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:409 calls_made:1 call_cycle:0 20:31:37 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:31:37 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:409 calls_made:1 call_cycle:0 20:31:37 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:31:37 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:409 calls_made:1 call_cycle:0 20:31:37 18 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:409 calls_made:1 call_cycle:0 2244.8050 -15800.8180 03/18/17 20:25:53 UTC) to sdrifter@soest.hawaii.edu 20:31:37 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:409 calls_made:1 call_cycle:0 20:31:37 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:31:37 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:409 calls_made:1 call_cycle:0 20:31:37 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:31:37 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:409 calls_made:1 call_cycle:0 20:31:37 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:31:37 18 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:409 calls_made:1 call_cycle:0 20:31:37 18 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:31:37 18 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:31:43 18 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:31:44 18 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:31:44 18 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:31:44 18 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:31:44 18 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:31:44 18 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:31:47 18 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0409lz 20:31:47 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0409lz.x00 20:31:47 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0409lz.x01 20:31:47 18 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0409lz.r in process_file_group 20:31:47 18 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260409.log 20:31:47 18 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:31:47 18 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0409dz 20:31:47 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0409dz.x00 20:31:47 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0409dz.x01 20:31:47 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0409dz.x02 20:31:47 18 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0409dz.x03 20:31:47 18 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0409dz.r in process_file_group 20:31:48 18 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [409] 20:31:48 18 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [409] 20:31:48 18 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260409) for profiles 20:31:48 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 20:31:48 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/654) 653 654 to QC_BAD because CT out of water 20:31:48 18 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.031m) 20:31:48 18 Mar 2017 UTC: INFO: QC.py(365): Changed (3/654) 251 252 257 to QC_PROBABLY_BAD because raw temperature spikes 20:31:48 18 Mar 2017 UTC: INFO: QC.py(408): Changed (4/654) 250:252 257 to QC_PROBABLY_BAD because raw conductivity spikes 20:31:48 18 Mar 2017 UTC: INFO: QC.py(180): Changed (3/654) 251 252 257 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 20:31:48 18 Mar 2017 UTC: INFO: QC.py(180): Changed (1/654) 250 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 20:31:48 18 Mar 2017 UTC: INFO: QC.py(180): Changed (2/654) 653 654 to QC_BAD because changed raw cond implies changed raw salinity 20:31:48 18 Mar 2017 UTC: INFO: QC.py(365): Changed (3/654) 251 252 257 to QC_INTERPOLATED because temperature spikes 20:31:48 18 Mar 2017 UTC: INFO: QC.py(408): Changed (4/654) 250:252 257 to QC_INTERPOLATED because conductivity spikes 20:31:48 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/654) 249:253 to QC_BAD because slow apogee CT flow 20:31:48 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/654) 1:6 to QC_BAD because prior to dive start 20:31:48 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/654) 1:6 249:253 653 654 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 20:31:48 18 Mar 2017 UTC: INFO: QC.py(180): Changed (13/654) 1:6 249:253 653 654 to QC_BAD because changed corrected salin implies changed speed 20:31:48 18 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 20:31:49 18 Mar 2017 UTC: INFO: QC.py(180): Changed (1/654) 257 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 20:31:49 18 Mar 2017 UTC: INFO: QC.py(180): Changed (1/654) 257 to QC_INTERPOLATED because changed corrected temp implies changed speed 20:31:49 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.83 cm/s 20:31:49 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.51 cm/s 20:31:49 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 20:31:49 18 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (189/654) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 20:31:49 18 Mar 2017 UTC: INFO: QC.py(180): Changed (1/654) 251 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 20:31:49 18 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (189/654) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 20:31:49 18 Mar 2017 UTC: INFO: QC.py(180): Changed (1/654) 251 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 20:31:49 18 Mar 2017 UTC: INFO: QC.py(180): Changed (13/654) 1:6 249:253 653 654 to QC_BAD because changed salinity implies changed optode oxygen 20:31:49 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 20:31:49 18 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 20:31:49 18 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 20:31:49 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 409: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.99% reduction 20:31:49 18 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.409 20:31:49 18 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.409 20:31:49 18 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:31:49 18 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:31:49 18 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:31:49 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 20:31:49 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 20:35:14 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 20:35:16 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 20:35:16 18 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 20:35:57 18 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:35:57 18 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:35:57 18 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:35:57 18 Mar 2017 UTC /home/sg626/p6260409.log /home/sg626/p6260409.eng /home/sg626/p6260409.asc /home/sg626/p6260409.pro /home/sg626/p6260409.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 20:35:57 18 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:35:57 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:35:57 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:35:57 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:35:57 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:35:57 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:35:57 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:35:57 18 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:35:57 18 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:35:57 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:35:57 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:35:57 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:35:57 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:35:57 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:35:57 18 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:35:57 18 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:35:57 18 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:35:57 18 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:35:57 18 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:35:57 18 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:35:57 18 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:35:57 18 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:35:57 18 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:35:57 18 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 20:35:57 18 Mar 2017 UTC 00:27:21 19 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 27303 00:27:21 19 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:30:29 19 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 27569 00:30:29 19 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:30:29 19 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:30:29 19 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:30:29 19 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:30:29 19 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170318143028 ] 00:30:29 19 Mar 2017 UTC: INFO: Base.py(1333): PID:27577 00:30:29 19 Mar 2017 UTC: INFO: Base.py(1375): Started processing 00:30:29 19 Mar 2017 UTC 00:30:29 19 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:30:30 19 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:30:30 19 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:30:30 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:30:30 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:410 calls_made:1 call_cycle:0 00:30:30 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:30:30 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:410 calls_made:1 call_cycle:0 00:30:30 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:30:30 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:410 calls_made:1 call_cycle:0 00:30:30 19 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:410 calls_made:1 call_cycle:0 2245.5000 -15800.7160 03/19/17 00:25:00 UTC) to sdrifter@soest.hawaii.edu 00:30:30 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:410 calls_made:1 call_cycle:0 00:30:30 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:30:30 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:410 calls_made:1 call_cycle:0 00:30:30 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:30:30 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:410 calls_made:1 call_cycle:0 00:30:30 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:30:30 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:410 calls_made:1 call_cycle:0 00:30:30 19 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:30:30 19 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:30:37 19 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:30:38 19 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:30:38 19 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:30:38 19 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:30:38 19 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:30:38 19 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:30:40 19 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0410lz 00:30:40 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0410lz.x00 00:30:40 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0410lz.x01 00:30:40 19 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0410lz.r in process_file_group 00:30:40 19 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260410.log 00:30:40 19 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:30:40 19 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0410dz 00:30:40 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0410dz.x00 00:30:40 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0410dz.x01 00:30:40 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0410dz.x02 00:30:40 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0410dz.x03 00:30:40 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0410dz.x04 00:30:40 19 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0410dz.r in process_file_group 00:30:41 19 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [410] 00:30:41 19 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [410] 00:30:41 19 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260410) for profiles 00:30:41 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 00:30:41 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/709) 709 to QC_BAD because CT out of water 00:30:41 19 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.043m) 00:30:41 19 Mar 2017 UTC: INFO: QC.py(377): Changed (1/709) 709 to QC_BAD because raw salinity below bound 00:30:41 19 Mar 2017 UTC: INFO: QC.py(408): Changed (1/709) 278 to QC_PROBABLY_BAD because raw conductivity spikes 00:30:41 19 Mar 2017 UTC: INFO: QC.py(180): Changed (1/709) 278 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 00:30:41 19 Mar 2017 UTC: INFO: QC.py(377): Changed (1/709) 709 to QC_BAD because salinity below bound 00:30:41 19 Mar 2017 UTC: INFO: QC.py(408): Changed (1/709) 278 to QC_INTERPOLATED because conductivity spikes 00:30:41 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/709) 277:281 to QC_BAD because slow apogee CT flow 00:30:41 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/709) 1:6 to QC_BAD because prior to dive start 00:30:41 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/709) 1:6 277:281 709 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:30:41 19 Mar 2017 UTC: INFO: QC.py(180): Changed (12/709) 1:6 277:281 709 to QC_BAD because changed corrected salin implies changed speed 00:30:41 19 Mar 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 708 00:30:42 19 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:30:42 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.59 cm/s 00:30:42 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.93 cm/s 00:30:42 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:30:42 19 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (204/709) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:30:42 19 Mar 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/709) 708 to QC_BAD because slow flow in SBE43 00:30:42 19 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (204/709) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 00:30:42 19 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/709) 707 to QC_BAD because bad aa4330 oyxgen 00:30:42 19 Mar 2017 UTC: INFO: QC.py(180): Changed (12/709) 1:6 277:281 709 to QC_BAD because changed salinity implies changed optode oxygen 00:30:42 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:30:42 19 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:30:42 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 00:30:42 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 410: Data set size for profile, binned and kkyy files reduced by 12 points, a 1.69% reduction 00:30:43 19 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.410 00:30:43 19 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:30:43 19 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:30:43 19 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:30:43 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 00:30:43 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 00:34:06 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 00:34:07 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 00:34:07 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 00:34:49 19 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:34:49 19 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:34:49 19 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:34:49 19 Mar 2017 UTC /home/sg626/p6260410.log /home/sg626/p6260410.eng /home/sg626/p6260410.asc /home/sg626/p6260410.pro /home/sg626/p6260410.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 00:34:49 19 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:34:49 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:34:49 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:34:49 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:34:49 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:34:49 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:34:49 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:34:49 19 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:34:49 19 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:34:49 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:34:49 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:34:49 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:34:49 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:34:49 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:34:49 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:34:49 19 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:34:49 19 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:34:49 19 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:34:49 19 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:34:49 19 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:34:49 19 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:34:49 19 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:34:49 19 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:34:49 19 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 00:34:49 19 Mar 2017 UTC 04:16:33 19 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 1594 04:16:33 19 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:19:43 19 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 1734 04:19:43 19 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:19:43 19 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:19:43 19 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:19:43 19 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:19:43 19 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170318181942 ] 04:19:43 19 Mar 2017 UTC: INFO: Base.py(1333): PID:1742 04:19:43 19 Mar 2017 UTC: INFO: Base.py(1375): Started processing 04:19:43 19 Mar 2017 UTC 04:19:43 19 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:19:44 19 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:19:44 19 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:19:44 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:19:44 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:411 calls_made:1 call_cycle:0 04:19:44 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:19:44 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:411 calls_made:1 call_cycle:0 04:19:44 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:19:44 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:411 calls_made:1 call_cycle:0 04:19:44 19 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:411 calls_made:1 call_cycle:0 2246.3030 -15800.4570 03/19/17 04:14:17 UTC) to sdrifter@soest.hawaii.edu 04:19:44 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:411 calls_made:1 call_cycle:0 04:19:44 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:19:44 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:411 calls_made:1 call_cycle:0 04:19:44 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:19:44 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:411 calls_made:1 call_cycle:0 04:19:44 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:19:44 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:411 calls_made:1 call_cycle:0 04:19:44 19 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:19:44 19 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:19:50 19 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:19:51 19 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:19:51 19 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:19:51 19 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:19:51 19 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:19:51 19 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:19:54 19 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0411lz 04:19:54 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0411lz.x00 04:19:54 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0411lz.x01 04:19:54 19 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0411lz.r in process_file_group 04:19:54 19 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260411.log 04:19:54 19 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:19:54 19 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0411dz 04:19:54 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0411dz.x00 04:19:54 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0411dz.x01 04:19:54 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0411dz.x02 04:19:54 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0411dz.x03 04:19:54 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0411dz.x04 04:19:54 19 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0411dz.r in process_file_group 04:19:55 19 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [411] 04:19:55 19 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [411] 04:19:55 19 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260411) for profiles 04:19:55 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 04:19:55 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/674) 674 to QC_BAD because CT out of water 04:19:55 19 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.087m) 04:19:55 19 Mar 2017 UTC: INFO: QC.py(365): Changed (3/674) 256 266 673 to QC_PROBABLY_BAD because raw temperature spikes 04:19:55 19 Mar 2017 UTC: INFO: QC.py(377): Changed (1/674) 674 to QC_BAD because raw salinity below bound 04:19:55 19 Mar 2017 UTC: INFO: QC.py(408): Changed (2/674) 256 273 to QC_PROBABLY_BAD because raw conductivity spikes 04:19:55 19 Mar 2017 UTC: INFO: QC.py(180): Changed (3/674) 256 266 673 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:19:55 19 Mar 2017 UTC: INFO: QC.py(180): Changed (1/674) 273 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 04:19:55 19 Mar 2017 UTC: INFO: QC.py(365): Changed (3/674) 256 266 673 to QC_INTERPOLATED because temperature spikes 04:19:55 19 Mar 2017 UTC: INFO: QC.py(377): Changed (1/674) 674 to QC_BAD because salinity below bound 04:19:55 19 Mar 2017 UTC: INFO: QC.py(408): Changed (2/674) 256 273 to QC_INTERPOLATED because conductivity spikes 04:19:55 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/674) 264:268 to QC_BAD because slow apogee CT flow 04:19:55 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/674) 1:6 to QC_BAD because prior to dive start 04:19:55 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/674) 672 673 to QC_BAD because end of climb 04:19:55 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/674) 1:6 264:268 672:674 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:19:55 19 Mar 2017 UTC: INFO: QC.py(180): Changed (14/674) 1:6 264:268 672:674 to QC_BAD because changed corrected salin implies changed speed 04:19:56 19 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:19:56 19 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 411 interp_salinity data_points in_between 418 424 % suspect thermal-inertia points 422 423 04:19:56 19 Mar 2017 UTC: INFO: QC.py(180): Changed (1/674) 256 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 04:19:56 19 Mar 2017 UTC: INFO: QC.py(180): Changed (1/674) 273 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 04:19:56 19 Mar 2017 UTC: INFO: QC.py(180): Changed (1/674) 256 to QC_INTERPOLATED because changed corrected temp implies changed speed 04:19:56 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.88 cm/s 04:19:56 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.28 cm/s 04:19:56 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:19:56 19 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (198/674) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:19:56 19 Mar 2017 UTC: INFO: QC.py(180): Changed (3/674) 256 266 673 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:19:56 19 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (198/674) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 04:19:56 19 Mar 2017 UTC: INFO: QC.py(180): Changed (3/674) 256 266 673 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:19:56 19 Mar 2017 UTC: INFO: QC.py(180): Changed (14/674) 1:6 264:268 672:674 to QC_BAD because changed salinity implies changed optode oxygen 04:19:56 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:19:56 19 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:19:56 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 04:19:56 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 411: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.08% reduction 04:19:56 19 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.411 04:19:56 19 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:19:56 19 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:19:56 19 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:19:56 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 04:19:56 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 04:23:22 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 04:23:24 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 04:23:24 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 04:24:05 19 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:24:05 19 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:24:05 19 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:24:05 19 Mar 2017 UTC /home/sg626/p6260411.log /home/sg626/p6260411.eng /home/sg626/p6260411.asc /home/sg626/p6260411.pro /home/sg626/p6260411.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 04:24:05 19 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:24:05 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:24:05 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:24:05 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:24:05 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:24:05 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:24:05 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:24:05 19 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:24:05 19 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:24:05 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:24:05 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:24:05 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:24:05 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:24:05 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:24:05 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:24:05 19 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:24:05 19 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:24:05 19 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:24:05 19 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:24:05 19 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:24:05 19 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:24:05 19 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:24:05 19 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:24:05 19 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 04:24:05 19 Mar 2017 UTC 08:09:16 19 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 10271 08:09:16 19 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:12:26 19 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 10541 08:12:26 19 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:12:26 19 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:12:26 19 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:12:26 19 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:12:26 19 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170318221225 ] 08:12:26 19 Mar 2017 UTC: INFO: Base.py(1333): PID:10548 08:12:26 19 Mar 2017 UTC: INFO: Base.py(1375): Started processing 08:12:26 19 Mar 2017 UTC 08:12:26 19 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:12:27 19 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:12:27 19 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:12:27 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:12:27 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:412 calls_made:1 call_cycle:0 08:12:27 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:12:27 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:412 calls_made:1 call_cycle:0 08:12:27 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:12:27 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:412 calls_made:1 call_cycle:0 08:12:27 19 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:412 calls_made:1 call_cycle:0 2246.7260 -15800.4300 03/19/17 08:07:01 UTC) to sdrifter@soest.hawaii.edu 08:12:27 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:412 calls_made:1 call_cycle:0 08:12:27 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:12:27 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:412 calls_made:1 call_cycle:0 08:12:27 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:12:27 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:412 calls_made:1 call_cycle:0 08:12:27 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:12:27 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:412 calls_made:1 call_cycle:0 08:12:27 19 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:12:27 19 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:12:34 19 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:12:35 19 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:12:35 19 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:12:35 19 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:12:35 19 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:12:35 19 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:12:38 19 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0412lz 08:12:38 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0412lz.x00 08:12:38 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0412lz.x01 08:12:38 19 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0412lz.r in process_file_group 08:12:38 19 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260412.log 08:12:38 19 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:12:38 19 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0412dz 08:12:38 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0412dz.x00 08:12:38 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0412dz.x01 08:12:38 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0412dz.x02 08:12:38 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0412dz.x03 08:12:38 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0412dz.x04 08:12:38 19 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0412dz.r in process_file_group 08:12:38 19 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [412] 08:12:38 19 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [412] 08:12:38 19 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260412) for profiles 08:12:38 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:12:38 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/700) 699 700 to QC_BAD because CT out of water 08:12:38 19 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.090m) 08:12:38 19 Mar 2017 UTC: INFO: QC.py(365): Changed (1/700) 699 to QC_PROBABLY_BAD because raw temperature spikes 08:12:38 19 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <242 pt uncorrectable 960.2m SUSPECT weak conductivity anomaly n:-0.27 p:0.29> 08:12:38 19 Mar 2017 UTC: INFO: QC.py(180): Changed (1/700) 699 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:12:38 19 Mar 2017 UTC: INFO: QC.py(180): Changed (2/700) 699 700 to QC_BAD because changed raw cond implies changed raw salinity 08:12:38 19 Mar 2017 UTC: INFO: QC.py(365): Changed (1/700) 699 to QC_INTERPOLATED because temperature spikes 08:12:38 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/700) 260:264 to QC_BAD because slow apogee CT flow 08:12:38 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/700) 1:6 to QC_BAD because prior to dive start 08:12:38 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/700) 698 to QC_BAD because end of climb 08:12:38 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/700) 1:6 260:264 698:700 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:12:38 19 Mar 2017 UTC: INFO: QC.py(180): Changed (14/700) 1:6 260:264 698:700 to QC_BAD because changed corrected salin implies changed speed 08:12:39 19 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:12:39 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.18 cm/s 08:12:39 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.08 cm/s 08:12:39 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:12:39 19 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (202/700) 139 140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:12:39 19 Mar 2017 UTC: INFO: QC.py(180): Changed (1/700) 699 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:12:39 19 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (202/700) 139 140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:12:39 19 Mar 2017 UTC: INFO: QC.py(180): Changed (1/700) 699 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:12:39 19 Mar 2017 UTC: INFO: QC.py(180): Changed (14/700) 1:6 260:264 698:700 to QC_BAD because changed salinity implies changed optode oxygen 08:12:39 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:12:39 19 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:12:39 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 08:12:39 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 412: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.00% reduction 08:12:39 19 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.412 08:12:39 19 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:12:39 19 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:12:39 19 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:12:40 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 08:12:40 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 08:16:04 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 08:16:05 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 08:16:05 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 08:16:47 19 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:16:47 19 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:16:47 19 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:16:47 19 Mar 2017 UTC /home/sg626/p6260412.log /home/sg626/p6260412.eng /home/sg626/p6260412.asc /home/sg626/p6260412.pro /home/sg626/p6260412.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 08:16:47 19 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:16:47 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:16:47 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:16:47 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:16:47 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:16:47 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:16:47 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:16:47 19 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:16:47 19 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:16:47 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:16:47 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:16:47 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:16:47 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:16:47 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:16:47 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:16:47 19 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:16:47 19 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:16:47 19 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:16:47 19 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:16:47 19 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:16:47 19 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:16:47 19 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:16:47 19 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:16:47 19 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 08:16:47 19 Mar 2017 UTC 12:12:08 19 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 21696 12:12:08 19 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:15:22 19 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 21881 12:15:22 19 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:15:22 19 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:15:22 19 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:15:22 19 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:15:22 19 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170319021521 ] 12:15:22 19 Mar 2017 UTC: INFO: Base.py(1333): PID:21891 12:15:22 19 Mar 2017 UTC: INFO: Base.py(1375): Started processing 12:15:22 19 Mar 2017 UTC 12:15:22 19 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:15:23 19 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:15:23 19 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:15:23 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:15:23 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:413 calls_made:1 call_cycle:0 12:15:23 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:15:23 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:413 calls_made:1 call_cycle:0 12:15:23 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:15:23 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:413 calls_made:1 call_cycle:0 12:15:23 19 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:413 calls_made:1 call_cycle:0 2247.2190 -15800.7280 03/19/17 12:09:50 UTC) to sdrifter@soest.hawaii.edu 12:15:23 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:413 calls_made:1 call_cycle:0 12:15:23 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:15:23 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:413 calls_made:1 call_cycle:0 12:15:23 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:15:23 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:413 calls_made:1 call_cycle:0 12:15:23 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:15:23 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:413 calls_made:1 call_cycle:0 12:15:23 19 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:15:23 19 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:15:30 19 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:15:31 19 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:15:31 19 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:15:31 19 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:15:31 19 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:15:31 19 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:15:34 19 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0413lz 12:15:34 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0413lz.x00 12:15:34 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0413lz.x01 12:15:34 19 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0413lz.r in process_file_group 12:15:34 19 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260413.log 12:15:34 19 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:15:34 19 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0413dz 12:15:34 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0413dz.x00 12:15:34 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0413dz.x01 12:15:34 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0413dz.x02 12:15:34 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0413dz.x03 12:15:34 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0413dz.x04 12:15:34 19 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0413dz.r in process_file_group 12:15:34 19 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [413] 12:15:34 19 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [413] 12:15:34 19 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260413) for profiles 12:15:34 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 12:15:34 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/734) 733 734 to QC_BAD because CT out of water 12:15:34 19 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.070m) 12:15:34 19 Mar 2017 UTC: INFO: QC.py(365): Changed (2/734) 2 276 to QC_PROBABLY_BAD because raw temperature spikes 12:15:34 19 Mar 2017 UTC: INFO: QC.py(408): Changed (1/734) 232 to QC_PROBABLY_BAD because raw conductivity spikes 12:15:34 19 Mar 2017 UTC: INFO: QC.py(180): Changed (2/734) 2 276 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 12:15:34 19 Mar 2017 UTC: INFO: QC.py(180): Changed (1/734) 232 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 12:15:34 19 Mar 2017 UTC: INFO: QC.py(180): Changed (2/734) 733 734 to QC_BAD because changed raw cond implies changed raw salinity 12:15:34 19 Mar 2017 UTC: INFO: QC.py(365): Changed (2/734) 2 276 to QC_INTERPOLATED because temperature spikes 12:15:34 19 Mar 2017 UTC: INFO: QC.py(408): Changed (1/734) 232 to QC_INTERPOLATED because conductivity spikes 12:15:34 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/734) 274:278 to QC_BAD because slow apogee CT flow 12:15:35 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/734) 1:6 to QC_BAD because prior to dive start 12:15:35 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/734) 731 732 to QC_BAD because end of climb 12:15:35 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/734) 1:6 274:278 731:734 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:15:35 19 Mar 2017 UTC: INFO: QC.py(180): Changed (15/734) 1:6 274:278 731:734 to QC_BAD because changed corrected salin implies changed speed 12:15:35 19 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:15:35 19 Mar 2017 UTC: INFO: QC.py(180): Changed (1/734) 232 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 12:15:35 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.20 cm/s 12:15:35 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.99 cm/s 12:15:35 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:15:35 19 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (209/734) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:15:35 19 Mar 2017 UTC: INFO: QC.py(180): Changed (2/734) 2 276 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 12:15:35 19 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (209/734) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 12:15:35 19 Mar 2017 UTC: INFO: QC.py(180): Changed (2/734) 2 276 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 12:15:35 19 Mar 2017 UTC: INFO: QC.py(180): Changed (15/734) 1:6 274:278 731:734 to QC_BAD because changed salinity implies changed optode oxygen 12:15:35 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:15:35 19 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:15:35 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 12:15:36 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 413: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.04% reduction 12:15:36 19 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.413 12:15:36 19 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:15:36 19 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:15:36 19 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:15:36 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 12:15:36 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 12:19:03 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 12:19:04 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 12:19:04 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 12:19:46 19 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:19:46 19 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:19:46 19 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 12:19:46 19 Mar 2017 UTC /home/sg626/p6260413.log /home/sg626/p6260413.eng /home/sg626/p6260413.asc /home/sg626/p6260413.pro /home/sg626/p6260413.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 12:19:46 19 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:19:46 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:19:46 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:19:46 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:19:46 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:19:46 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:19:46 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:19:46 19 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:19:46 19 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:19:46 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:19:46 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:19:46 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:19:46 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:19:46 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:19:46 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:19:46 19 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:19:46 19 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 12:19:46 19 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 12:19:46 19 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 12:19:46 19 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 12:19:46 19 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:19:46 19 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:19:46 19 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:19:46 19 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 12:19:46 19 Mar 2017 UTC 16:11:01 19 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 28544 16:11:01 19 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:12:43 19 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 28655 16:12:43 19 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:12:43 19 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:12:43 19 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:12:43 19 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:12:43 19 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170319061242 ] 16:12:43 19 Mar 2017 UTC: INFO: Base.py(1333): PID:28662 16:12:43 19 Mar 2017 UTC: INFO: Base.py(1375): Started processing 16:12:43 19 Mar 2017 UTC 16:12:43 19 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:12:44 19 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:12:44 19 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:12:44 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:12:44 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:414 calls_made:1 call_cycle:0 16:12:44 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:12:44 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:414 calls_made:1 call_cycle:0 16:12:44 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:12:44 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:414 calls_made:1 call_cycle:0 16:12:44 19 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:414 calls_made:1 call_cycle:0 2247.8780 -15800.9620 03/19/17 16:08:30 UTC) to sdrifter@soest.hawaii.edu 16:12:44 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:414 calls_made:1 call_cycle:0 16:12:44 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:12:44 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:414 calls_made:1 call_cycle:0 16:12:44 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:12:44 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:414 calls_made:1 call_cycle:0 16:12:44 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:12:44 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:414 calls_made:1 call_cycle:0 16:12:44 19 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:12:44 19 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:12:51 19 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:12:52 19 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:12:52 19 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:12:52 19 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:12:52 19 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:12:52 19 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:12:54 19 Mar 2017 UTC: WARNING: Base.py(1624): No dives to process 16:12:54 19 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [] 16:12:54 19 Mar 2017 UTC: INFO: Base.py(1780): No dives found to profile 16:12:54 19 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.414 16:12:54 19 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:12:54 19 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:12:54 19 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:12:55 19 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:12:55 19 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:12:55 19 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:12:55 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:12:55 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:12:55 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:12:55 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:12:55 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:12:55 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:12:55 19 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:12:55 19 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:12:55 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:12:55 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:12:55 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:12:55 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:12:55 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:12:55 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:12:55 19 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:12:55 19 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:12:55 19 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:12:55 19 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:12:55 19 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:12:55 19 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:12:55 19 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:12:55 19 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:12:55 19 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 16:12:55 19 Mar 2017 UTC 16:15:19 19 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 28962 16:15:19 19 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:18:19 19 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 29090 16:18:19 19 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:18:19 19 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:18:19 19 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:18:19 19 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:18:19 19 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170319061819 ] 16:18:19 19 Mar 2017 UTC: INFO: Base.py(1333): PID:29097 16:18:19 19 Mar 2017 UTC: INFO: Base.py(1375): Started processing 16:18:19 19 Mar 2017 UTC 16:18:19 19 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:18:21 19 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:18:21 19 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:18:21 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:18:21 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:414 calls_made:2 call_cycle:0 16:18:21 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:18:21 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:414 calls_made:2 call_cycle:0 16:18:21 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:18:21 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:414 calls_made:2 call_cycle:0 16:18:21 19 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:414 calls_made:2 call_cycle:0 2247.8780 -15800.9620 03/19/17 16:08:30 UTC) to sdrifter@soest.hawaii.edu 16:18:21 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:414 calls_made:2 call_cycle:0 16:18:21 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:18:21 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:414 calls_made:2 call_cycle:0 16:18:21 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:18:21 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:414 calls_made:2 call_cycle:0 16:18:21 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:18:21 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:414 calls_made:2 call_cycle:0 16:18:21 19 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:18:21 19 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:18:27 19 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:18:28 19 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:18:28 19 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:18:28 19 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:18:28 19 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:18:28 19 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:18:31 19 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0414lz 16:18:31 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0414lz.x00 16:18:31 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0414lz.x01 16:18:31 19 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0414lz.r in process_file_group 16:18:31 19 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260414.log 16:18:31 19 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:18:31 19 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0414dz 16:18:31 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0414dz.x00 16:18:31 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0414dz.x01 16:18:31 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0414dz.x02 16:18:31 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0414dz.x03 16:18:31 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0414dz.x04 16:18:31 19 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0414dz.r in process_file_group 16:18:32 19 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [414] 16:18:32 19 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [414] 16:18:32 19 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260414) for profiles 16:18:32 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:18:32 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/707) 705:707 to QC_BAD because CT out of water 16:18:32 19 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.081m) 16:18:32 19 Mar 2017 UTC: INFO: QC.py(365): Changed (4/707) 2 3 266 706 to QC_PROBABLY_BAD because raw temperature spikes 16:18:32 19 Mar 2017 UTC: INFO: QC.py(408): Changed (1/707) 306 to QC_PROBABLY_BAD because raw conductivity spikes 16:18:32 19 Mar 2017 UTC: INFO: QC.py(180): Changed (4/707) 2 3 266 706 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:18:32 19 Mar 2017 UTC: INFO: QC.py(180): Changed (1/707) 306 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 16:18:32 19 Mar 2017 UTC: INFO: QC.py(180): Changed (3/707) 705:707 to QC_BAD because changed raw cond implies changed raw salinity 16:18:32 19 Mar 2017 UTC: INFO: QC.py(365): Changed (4/707) 2 3 266 706 to QC_INTERPOLATED because temperature spikes 16:18:32 19 Mar 2017 UTC: INFO: QC.py(408): Changed (1/707) 306 to QC_INTERPOLATED because conductivity spikes 16:18:32 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/707) 277:281 to QC_BAD because slow apogee CT flow 16:18:32 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/707) 1:6 to QC_BAD because prior to dive start 16:18:32 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/707) 1:6 277:281 705:707 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:18:32 19 Mar 2017 UTC: INFO: QC.py(180): Changed (14/707) 1:6 277:281 705:707 to QC_BAD because changed corrected salin implies changed speed 16:18:33 19 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:18:33 19 Mar 2017 UTC: INFO: QC.py(180): Changed (1/707) 266 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 16:18:33 19 Mar 2017 UTC: INFO: QC.py(180): Changed (1/707) 306 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 16:18:33 19 Mar 2017 UTC: INFO: QC.py(180): Changed (1/707) 266 to QC_INTERPOLATED because changed corrected temp implies changed speed 16:18:33 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.80 cm/s 16:18:33 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.99 cm/s 16:18:33 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:18:33 19 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (208/707) 155 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:18:33 19 Mar 2017 UTC: INFO: QC.py(180): Changed (4/707) 2 3 266 706 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:18:33 19 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (208/707) 155 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:18:33 19 Mar 2017 UTC: INFO: QC.py(180): Changed (4/707) 2 3 266 706 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:18:33 19 Mar 2017 UTC: INFO: QC.py(180): Changed (14/707) 1:6 277:281 705:707 to QC_BAD because changed salinity implies changed optode oxygen 16:18:33 19 Mar 2017 UTC: INFO: QC.py(180): Changed (1/707) 306 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 16:18:33 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:18:33 19 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:18:33 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:18:33 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 414: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.98% reduction 16:18:33 19 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.414 16:18:33 19 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:18:33 19 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:18:33 19 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:18:33 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:18:33 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:22:01 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 16:22:02 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:22:02 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:22:45 19 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:22:45 19 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:22:45 19 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:22:45 19 Mar 2017 UTC /home/sg626/p6260414.log /home/sg626/p6260414.eng /home/sg626/p6260414.asc /home/sg626/p6260414.pro /home/sg626/p6260414.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:22:45 19 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:22:45 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:22:45 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:22:45 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:22:45 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:22:45 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:22:45 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:22:45 19 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:22:45 19 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:22:45 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:22:45 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:22:45 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:22:45 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:22:45 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:22:45 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:22:45 19 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:22:45 19 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:22:45 19 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:22:45 19 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:22:45 19 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:22:45 19 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:22:45 19 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:22:45 19 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:22:45 19 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 16:22:45 19 Mar 2017 UTC 20:12:00 19 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 3074 20:12:00 19 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:15:04 19 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 3208 20:15:04 19 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:15:04 19 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:15:04 19 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:15:04 19 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:15:04 19 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170319101504 ] 20:15:04 19 Mar 2017 UTC: INFO: Base.py(1333): PID:3215 20:15:04 19 Mar 2017 UTC: INFO: Base.py(1375): Started processing 20:15:04 19 Mar 2017 UTC 20:15:04 19 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:15:05 19 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:15:05 19 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:15:05 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:15:05 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:415 calls_made:3 call_cycle:0 20:15:05 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:15:05 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:415 calls_made:3 call_cycle:0 20:15:05 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:15:05 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:415 calls_made:3 call_cycle:0 20:15:05 19 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:415 calls_made:3 call_cycle:0 2248.3250 -15800.9950 03/19/17 20:06:00 UTC) to sdrifter@soest.hawaii.edu 20:15:06 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:415 calls_made:3 call_cycle:0 20:15:06 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:15:06 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:415 calls_made:3 call_cycle:0 20:15:06 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:15:06 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:415 calls_made:3 call_cycle:0 20:15:06 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:15:06 19 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:415 calls_made:3 call_cycle:0 20:15:06 19 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:15:06 19 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:15:12 19 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:15:13 19 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:15:13 19 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:15:13 19 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:15:13 19 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:15:13 19 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:15:16 19 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0415lz 20:15:16 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0415lz.x00 20:15:16 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0415lz.x01 20:15:16 19 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0415lz.r in process_file_group 20:15:16 19 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260415.log 20:15:16 19 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:15:16 19 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0415dz 20:15:16 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0415dz.x00 20:15:16 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0415dz.x01 20:15:16 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0415dz.x02 20:15:16 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0415dz.x03 20:15:16 19 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0415dz.x04 20:15:16 19 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0415dz.r in process_file_group 20:15:16 19 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [415] 20:15:16 19 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [415] 20:15:16 19 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260415) for profiles 20:15:16 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 20:15:17 19 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2894): Unable to converge during initial glide-slope speed calculations 20:15:17 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/680) 679 680 to QC_BAD because CT out of water 20:15:17 19 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.068m) 20:15:17 19 Mar 2017 UTC: INFO: QC.py(365): Changed (3/680) 5 270 275 to QC_PROBABLY_BAD because raw temperature spikes 20:15:17 19 Mar 2017 UTC: INFO: QC.py(377): Changed (1/680) 679 to QC_BAD because raw salinity below bound 20:15:17 19 Mar 2017 UTC: INFO: QC.py(408): Changed (1/680) 275 to QC_PROBABLY_BAD because raw conductivity spikes 20:15:17 19 Mar 2017 UTC: INFO: QC.py(180): Changed (3/680) 5 270 275 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 20:15:17 19 Mar 2017 UTC: INFO: QC.py(180): Changed (1/680) 680 to QC_BAD because changed raw cond implies changed raw salinity 20:15:17 19 Mar 2017 UTC: INFO: QC.py(365): Changed (3/680) 5 270 275 to QC_INTERPOLATED because temperature spikes 20:15:17 19 Mar 2017 UTC: INFO: QC.py(377): Changed (1/680) 679 to QC_BAD because salinity below bound 20:15:17 19 Mar 2017 UTC: INFO: QC.py(408): Changed (1/680) 275 to QC_INTERPOLATED because conductivity spikes 20:15:17 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/680) 273:277 to QC_BAD because slow apogee CT flow 20:15:17 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/680) 1:7 to QC_BAD because prior to dive start 20:15:17 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/680) 1:7 273:277 679 680 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 20:15:17 19 Mar 2017 UTC: INFO: QC.py(180): Changed (14/680) 1:7 273:277 679 680 to QC_BAD because changed corrected salin implies changed speed 20:15:18 19 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 20:15:18 19 Mar 2017 UTC: INFO: QC.py(180): Changed (1/680) 270 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 20:15:18 19 Mar 2017 UTC: INFO: QC.py(180): Changed (1/680) 270 to QC_INTERPOLATED because changed corrected temp implies changed speed 20:15:18 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.05 cm/s 20:15:18 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.97 cm/s 20:15:18 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 20:15:18 19 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (199/680) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 20:15:18 19 Mar 2017 UTC: INFO: QC.py(180): Changed (1/680) 5 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 20:15:18 19 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (199/680) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 20:15:18 19 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/680) 677 678 to QC_BAD because bad aa4330 oyxgen 20:15:18 19 Mar 2017 UTC: INFO: QC.py(180): Changed (1/680) 5 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 20:15:18 19 Mar 2017 UTC: INFO: QC.py(180): Changed (14/680) 1:7 273:277 679 680 to QC_BAD because changed salinity implies changed optode oxygen 20:15:18 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 20:15:18 19 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 20:15:18 19 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 20:15:18 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 415: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.06% reduction 20:15:18 19 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.415 20:15:18 19 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:15:18 19 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:15:18 19 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:15:19 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 20:15:19 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 20:18:48 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 20:18:49 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 20:18:49 19 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 20:19:32 19 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:19:32 19 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:19:32 19 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:19:32 19 Mar 2017 UTC /home/sg626/p6260415.log /home/sg626/p6260415.eng /home/sg626/p6260415.asc /home/sg626/p6260415.pro /home/sg626/p6260415.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 20:19:32 19 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:19:32 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:19:32 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:19:32 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:19:32 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:19:32 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:19:32 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:19:32 19 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:19:32 19 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:19:32 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:19:32 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:19:32 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:19:32 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:19:32 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:19:32 19 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:19:32 19 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:19:32 19 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:19:32 19 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:19:32 19 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:19:32 19 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:19:32 19 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:19:32 19 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:19:32 19 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:19:32 19 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 20:19:32 19 Mar 2017 UTC 00:09:42 20 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9277 00:09:42 20 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:12:54 20 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9418 00:12:54 20 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:12:54 20 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:12:54 20 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:12:54 20 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:12:54 20 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170319141254 ] 00:12:54 20 Mar 2017 UTC: INFO: Base.py(1333): PID:9426 00:12:54 20 Mar 2017 UTC: INFO: Base.py(1375): Started processing 00:12:54 20 Mar 2017 UTC 00:12:54 20 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:12:55 20 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:12:55 20 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:12:55 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:12:55 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:416 calls_made:1 call_cycle:0 00:12:55 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:12:55 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:416 calls_made:1 call_cycle:0 00:12:55 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:12:55 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:416 calls_made:1 call_cycle:0 00:12:55 20 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:416 calls_made:1 call_cycle:0 2248.5560 -15801.1070 03/20/17 00:07:24 UTC) to sdrifter@soest.hawaii.edu 00:12:55 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:416 calls_made:1 call_cycle:0 00:12:55 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:12:55 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:416 calls_made:1 call_cycle:0 00:12:55 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:12:55 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:416 calls_made:1 call_cycle:0 00:12:55 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:12:55 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:416 calls_made:1 call_cycle:0 00:12:55 20 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:12:55 20 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:13:02 20 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:13:03 20 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:13:03 20 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:13:03 20 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:13:03 20 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:13:03 20 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:13:06 20 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0416lz 00:13:06 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0416lz.x00 00:13:06 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0416lz.x01 00:13:06 20 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0416lz.r in process_file_group 00:13:06 20 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260416.log 00:13:06 20 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:13:06 20 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0416dz 00:13:06 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0416dz.x00 00:13:06 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0416dz.x01 00:13:06 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0416dz.x02 00:13:06 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0416dz.x03 00:13:06 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0416dz.x04 00:13:06 20 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0416dz.r in process_file_group 00:13:06 20 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [416] 00:13:06 20 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [416] 00:13:07 20 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260416) for profiles 00:13:07 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 00:13:07 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/679) 678 679 to QC_BAD because CT out of water 00:13:07 20 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.075m) 00:13:07 20 Mar 2017 UTC: INFO: QC.py(365): Changed (3/679) 2 279 678 to QC_PROBABLY_BAD because raw temperature spikes 00:13:07 20 Mar 2017 UTC: INFO: QC.py(377): Changed (2/679) 678 679 to QC_BAD because raw salinity below bound 00:13:07 20 Mar 2017 UTC: INFO: QC.py(408): Changed (3/679) 2 279 628 to QC_PROBABLY_BAD because raw conductivity spikes 00:13:07 20 Mar 2017 UTC: INFO: QC.py(180): Changed (2/679) 2 279 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:13:07 20 Mar 2017 UTC: INFO: QC.py(180): Changed (1/679) 628 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 00:13:07 20 Mar 2017 UTC: INFO: QC.py(365): Changed (3/679) 2 279 678 to QC_INTERPOLATED because temperature spikes 00:13:07 20 Mar 2017 UTC: INFO: QC.py(377): Changed (2/679) 678 679 to QC_BAD because salinity below bound 00:13:07 20 Mar 2017 UTC: INFO: QC.py(408): Changed (3/679) 2 279 628 to QC_INTERPOLATED because conductivity spikes 00:13:07 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/679) 277:281 to QC_BAD because slow apogee CT flow 00:13:07 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/679) 1:6 to QC_BAD because prior to dive start 00:13:07 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/679) 1:6 277:281 678 679 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:13:07 20 Mar 2017 UTC: INFO: QC.py(180): Changed (13/679) 1:6 277:281 678 679 to QC_BAD because changed corrected salin implies changed speed 00:13:07 20 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:13:08 20 Mar 2017 UTC: INFO: QC.py(180): Changed (1/679) 628 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 00:13:08 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.48 cm/s 00:13:08 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.01 cm/s 00:13:08 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:13:08 20 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (209/679) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:13:08 20 Mar 2017 UTC: INFO: QC.py(180): Changed (2/679) 2 678 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:13:08 20 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (209/679) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 00:13:08 20 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/679) 676 to QC_BAD because bad aa4330 oyxgen 00:13:08 20 Mar 2017 UTC: INFO: QC.py(180): Changed (2/679) 2 678 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:13:08 20 Mar 2017 UTC: INFO: QC.py(180): Changed (13/679) 1:6 277:281 678 679 to QC_BAD because changed salinity implies changed optode oxygen 00:13:08 20 Mar 2017 UTC: INFO: QC.py(180): Changed (1/679) 628 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 00:13:08 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:13:08 20 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:13:08 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 00:13:08 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 416: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.91% reduction 00:13:08 20 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.416 00:13:08 20 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:13:08 20 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:13:08 20 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:13:08 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 00:13:08 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 00:16:35 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 00:16:36 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 00:16:36 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 00:17:19 20 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:17:19 20 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:17:19 20 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:17:19 20 Mar 2017 UTC /home/sg626/p6260416.log /home/sg626/p6260416.eng /home/sg626/p6260416.asc /home/sg626/p6260416.pro /home/sg626/p6260416.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 00:17:19 20 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:17:19 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:17:19 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:17:19 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:17:19 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:17:19 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:17:19 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:17:19 20 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:17:19 20 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:17:19 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:17:19 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:17:19 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:17:19 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:17:19 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:17:19 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:17:19 20 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:17:19 20 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:17:19 20 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:17:19 20 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:17:19 20 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:17:19 20 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:17:19 20 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:17:19 20 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:17:19 20 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 00:17:19 20 Mar 2017 UTC 03:56:52 20 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 15069 03:56:52 20 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:00:00 20 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 15196 04:00:00 20 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:00:00 20 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:00:00 20 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:00:00 20 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:00:00 20 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170319175959 ] 04:00:00 20 Mar 2017 UTC: INFO: Base.py(1333): PID:15204 04:00:00 20 Mar 2017 UTC: INFO: Base.py(1375): Started processing 04:00:00 20 Mar 2017 UTC 04:00:00 20 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:00:01 20 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:00:01 20 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:00:01 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:00:01 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:417 calls_made:1 call_cycle:0 04:00:01 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:00:01 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:417 calls_made:1 call_cycle:0 04:00:01 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:00:01 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:417 calls_made:1 call_cycle:0 04:00:01 20 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:417 calls_made:1 call_cycle:0 2248.8210 -15801.4900 03/20/17 03:54:28 UTC) to sdrifter@soest.hawaii.edu 04:00:06 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:417 calls_made:1 call_cycle:0 04:00:06 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:00:06 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:417 calls_made:1 call_cycle:0 04:00:06 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:00:06 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:417 calls_made:1 call_cycle:0 04:00:06 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:00:06 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:417 calls_made:1 call_cycle:0 04:00:06 20 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:00:06 20 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:00:13 20 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:00:14 20 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:00:14 20 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:00:14 20 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:00:14 20 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:00:14 20 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:00:17 20 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0417lz 04:00:17 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0417lz.x00 04:00:17 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0417lz.x01 04:00:17 20 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0417lz.r in process_file_group 04:00:17 20 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260417.log 04:00:17 20 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:00:17 20 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0417dz 04:00:17 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0417dz.x00 04:00:17 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0417dz.x01 04:00:17 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0417dz.x02 04:00:17 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0417dz.x03 04:00:17 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0417dz.x04 04:00:17 20 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0417dz.r in process_file_group 04:00:17 20 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [417] 04:00:17 20 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [417] 04:00:17 20 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260417) for profiles 04:00:17 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 04:00:17 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/675) 673 675 to QC_BAD because CT out of water 04:00:17 20 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.099m) 04:00:17 20 Mar 2017 UTC: INFO: QC.py(365): Changed (3/675) 274 673 674 to QC_PROBABLY_BAD because raw temperature spikes 04:00:17 20 Mar 2017 UTC: INFO: QC.py(377): Changed (1/675) 675 to QC_BAD because raw salinity below bound 04:00:17 20 Mar 2017 UTC: INFO: QC.py(408): Changed (2/675) 2 274 to QC_PROBABLY_BAD because raw conductivity spikes 04:00:17 20 Mar 2017 UTC: INFO: QC.py(180): Changed (3/675) 274 673 674 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:00:17 20 Mar 2017 UTC: INFO: QC.py(180): Changed (1/675) 2 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 04:00:17 20 Mar 2017 UTC: INFO: QC.py(180): Changed (1/675) 673 to QC_BAD because changed raw cond implies changed raw salinity 04:00:17 20 Mar 2017 UTC: INFO: QC.py(365): Changed (3/675) 274 673 674 to QC_INTERPOLATED because temperature spikes 04:00:17 20 Mar 2017 UTC: INFO: QC.py(377): Changed (1/675) 675 to QC_BAD because salinity below bound 04:00:17 20 Mar 2017 UTC: INFO: QC.py(408): Changed (2/675) 2 274 to QC_INTERPOLATED because conductivity spikes 04:00:17 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/675) 272:276 to QC_BAD because slow apogee CT flow 04:00:17 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/675) 1:6 to QC_BAD because prior to dive start 04:00:17 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/675) 1:6 272:276 673 675 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:00:17 20 Mar 2017 UTC: INFO: QC.py(180): Changed (13/675) 1:6 272:276 673 675 to QC_BAD because changed corrected salin implies changed speed 04:00:18 20 Mar 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 674 04:00:18 20 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:00:18 20 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 417 interp_salinity data_points in_between 440 446 % suspect thermal-inertia points 04:00:18 20 Mar 2017 UTC: INFO: QC.py(180): Changed (1/675) 674 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 04:00:18 20 Mar 2017 UTC: INFO: QC.py(180): Changed (1/675) 674 to QC_INTERPOLATED because changed corrected temp implies changed speed 04:00:18 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.49 cm/s 04:00:18 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.13 cm/s 04:00:18 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:00:18 20 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (196/675) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:00:18 20 Mar 2017 UTC: INFO: QC.py(180): Changed (2/675) 673 674 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:00:18 20 Mar 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/675) 674 to QC_BAD because slow flow in SBE43 04:00:18 20 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (196/675) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 04:00:18 20 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/675) 397 to QC_BAD because bad aa4330 oyxgen 04:00:18 20 Mar 2017 UTC: INFO: QC.py(180): Changed (2/675) 673 674 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:00:18 20 Mar 2017 UTC: INFO: QC.py(180): Changed (13/675) 1:6 272:276 673 675 to QC_BAD because changed salinity implies changed optode oxygen 04:00:18 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:00:18 20 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:00:18 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 04:00:19 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 417: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.93% reduction 04:00:19 20 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.417 04:00:19 20 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:00:19 20 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:00:19 20 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:00:19 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 04:00:19 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 04:03:50 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 04:03:51 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 04:03:51 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 04:04:33 20 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:04:33 20 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:04:33 20 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:04:33 20 Mar 2017 UTC /home/sg626/p6260417.log /home/sg626/p6260417.eng /home/sg626/p6260417.asc /home/sg626/p6260417.pro /home/sg626/p6260417.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 04:04:33 20 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:04:33 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:04:33 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:04:33 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:04:33 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:04:33 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:04:33 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:04:33 20 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:04:33 20 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:04:33 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:04:33 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:04:33 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:04:33 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:04:33 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:04:33 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:04:33 20 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:04:33 20 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:04:33 20 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:04:33 20 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:04:33 20 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:04:33 20 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:04:33 20 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:04:33 20 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:04:33 20 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 04:04:33 20 Mar 2017 UTC 07:58:51 20 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 21981 07:58:51 20 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:01:34 20 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 22357 08:01:34 20 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:01:34 20 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:01:34 20 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:01:34 20 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:01:34 20 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170319220133 ] 08:01:34 20 Mar 2017 UTC: INFO: Base.py(1333): PID:22364 08:01:34 20 Mar 2017 UTC: INFO: Base.py(1375): Started processing 08:01:34 20 Mar 2017 UTC 08:01:34 20 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:01:35 20 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:01:35 20 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:01:35 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:01:35 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:418 calls_made:1 call_cycle:0 08:01:35 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:01:35 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:418 calls_made:1 call_cycle:0 08:01:35 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:01:35 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:418 calls_made:1 call_cycle:0 08:01:35 20 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:418 calls_made:1 call_cycle:0 2249.2510 -15801.8910 03/20/17 07:56:30 UTC) to sdrifter@soest.hawaii.edu 08:01:35 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:418 calls_made:1 call_cycle:0 08:01:35 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:01:35 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:418 calls_made:1 call_cycle:0 08:01:35 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:01:35 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:418 calls_made:1 call_cycle:0 08:01:35 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:01:35 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:418 calls_made:1 call_cycle:0 08:01:35 20 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:01:35 20 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:01:42 20 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:01:43 20 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:01:43 20 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:01:43 20 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:01:43 20 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:01:43 20 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:01:45 20 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0418lz 08:01:45 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0418lz.x00 08:01:45 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0418lz.x01 08:01:45 20 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0418lz.r in process_file_group 08:01:45 20 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260418.log 08:01:45 20 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:01:45 20 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0418dz 08:01:45 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0418dz.x00 08:01:45 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0418dz.x01 08:01:45 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0418dz.1a.x02 08:01:45 20 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0418dz.r in process_file_group 08:01:45 20 Mar 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0418dz.r - expected 0x1226642627, generated 0xb9c9485d 08:01:45 20 Mar 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0418dz.r - expected 0xe1c16fb6, generated 0x75b2 08:01:45 20 Mar 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0418dz.r - skipping 08:01:45 20 Mar 2017 UTC: ERROR: Base.py(272): Could not process sg0418dz - skipping 08:01:45 20 Mar 2017 UTC: WARNING: Base.py(1624): No dives to process 08:01:46 20 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [418] 08:01:46 20 Mar 2017 UTC: INFO: Base.py(1780): No dives found to profile 08:01:46 20 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.418 08:01:46 20 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:01:46 20 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:01:46 20 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:01:46 20 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:01:46 20 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:01:46 20 Mar 2017 UTC: ERROR: Base.py(1960): Dive [418] failed to process completely. The following files were not processed completely: /home/sg626/sg0418dz.r Glider logout not seen - retransmissions from glider possible Consult baselog_170319220133 for details. 08:01:46 20 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:01:46 20 Mar 2017 UTC /home/sg626/p6260418.log 08:01:46 20 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:01:46 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:01:46 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:01:46 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:01:46 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:01:46 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:01:46 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:01:46 20 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:01:46 20 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:01:46 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:01:46 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:01:46 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:01:46 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:01:46 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:01:46 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:01:46 20 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:01:46 20 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:01:46 20 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:01:46 20 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:01:46 20 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:01:46 20 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:01:46 20 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:01:46 20 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:01:46 20 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 08:01:46 20 Mar 2017 UTC 08:04:13 20 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 22607 08:04:13 20 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:06:31 20 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 22728 08:06:31 20 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:06:31 20 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:06:31 20 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:06:31 20 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:06:31 20 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170319220630 ] 08:06:31 20 Mar 2017 UTC: INFO: Base.py(1333): PID:22736 08:06:31 20 Mar 2017 UTC: INFO: Base.py(1375): Started processing 08:06:31 20 Mar 2017 UTC 08:06:31 20 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:06:32 20 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:06:32 20 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:06:32 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:06:32 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:418 calls_made:2 call_cycle:0 08:06:32 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:06:32 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:418 calls_made:2 call_cycle:0 08:06:32 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:06:32 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:418 calls_made:2 call_cycle:0 08:06:32 20 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:418 calls_made:2 call_cycle:0 2249.2510 -15801.8910 03/20/17 07:56:30 UTC) to sdrifter@soest.hawaii.edu 08:06:32 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:418 calls_made:2 call_cycle:0 08:06:32 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:06:32 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:418 calls_made:2 call_cycle:0 08:06:32 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:06:32 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:418 calls_made:2 call_cycle:0 08:06:32 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:06:32 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:418 calls_made:2 call_cycle:0 08:06:32 20 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:06:32 20 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:06:39 20 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:06:40 20 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:06:40 20 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:06:40 20 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:06:40 20 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:06:40 20 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:06:43 20 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:06:43 20 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0418dz 08:06:43 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0418dz.x00 08:06:43 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0418dz.x01 08:06:43 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0418dz.x02 08:06:43 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0418dz.x03 08:06:43 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0418dz.x04 08:06:43 20 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0418dz.r in process_file_group 08:06:43 20 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [418] 08:06:43 20 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [418] 08:06:44 20 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260418) for profiles 08:06:44 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:06:44 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/738) 737 738 to QC_BAD because CT out of water 08:06:44 20 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.043m) 08:06:44 20 Mar 2017 UTC: INFO: QC.py(365): Changed (1/738) 270 to QC_PROBABLY_BAD because raw temperature spikes 08:06:44 20 Mar 2017 UTC: INFO: QC.py(377): Changed (1/738) 737 to QC_BAD because raw salinity below bound 08:06:44 20 Mar 2017 UTC: INFO: QC.py(408): Changed (1/738) 270 to QC_PROBABLY_BAD because raw conductivity spikes 08:06:44 20 Mar 2017 UTC: INFO: QC.py(180): Changed (1/738) 270 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:06:44 20 Mar 2017 UTC: INFO: QC.py(180): Changed (1/738) 738 to QC_BAD because changed raw cond implies changed raw salinity 08:06:44 20 Mar 2017 UTC: INFO: QC.py(365): Changed (1/738) 270 to QC_INTERPOLATED because temperature spikes 08:06:44 20 Mar 2017 UTC: INFO: QC.py(377): Changed (1/738) 737 to QC_BAD because salinity below bound 08:06:44 20 Mar 2017 UTC: INFO: QC.py(408): Changed (1/738) 270 to QC_INTERPOLATED because conductivity spikes 08:06:44 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/738) 268:272 to QC_BAD because slow apogee CT flow 08:06:44 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/738) 1:6 to QC_BAD because prior to dive start 08:06:44 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/738) 1:6 268:272 737 738 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:06:44 20 Mar 2017 UTC: INFO: QC.py(180): Changed (13/738) 1:6 268:272 737 738 to QC_BAD because changed corrected salin implies changed speed 08:06:45 20 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:06:45 20 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 418 interp_salinity data_points in_between 435 439 % suspect thermal-inertia points 436 437 08:06:45 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 27.89 cm/s 08:06:45 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.19 cm/s 08:06:45 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:06:45 20 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (208/738) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:06:45 20 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (208/738) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:06:45 20 Mar 2017 UTC: INFO: QC.py(180): Changed (13/738) 1:6 268:272 737 738 to QC_BAD because changed salinity implies changed optode oxygen 08:06:45 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:06:45 20 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:06:45 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 08:06:45 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 418: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.76% reduction 08:06:45 20 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.418 08:06:45 20 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:06:45 20 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:06:45 20 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:06:45 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 08:06:45 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 08:10:18 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 08:10:19 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 08:10:19 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 08:11:01 20 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:11:01 20 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:11:01 20 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:11:01 20 Mar 2017 UTC /home/sg626/p6260418.eng /home/sg626/p6260418.asc /home/sg626/p6260418.pro /home/sg626/p6260418.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 08:11:01 20 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:11:01 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:11:01 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:11:01 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:11:01 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:11:01 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:11:01 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:11:01 20 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:11:01 20 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:11:01 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:11:01 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:11:01 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:11:01 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:11:01 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:11:01 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:11:01 20 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:11:01 20 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:11:01 20 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:11:01 20 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:11:01 20 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:11:01 20 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:11:01 20 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:11:01 20 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:11:01 20 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 08:11:01 20 Mar 2017 UTC 11:52:04 20 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 28947 11:52:04 20 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 11:55:09 20 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 29076 11:55:09 20 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:55:09 20 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 11:55:09 20 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 11:55:09 20 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:55:09 20 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170320015508 ] 11:55:09 20 Mar 2017 UTC: INFO: Base.py(1333): PID:29084 11:55:09 20 Mar 2017 UTC: INFO: Base.py(1375): Started processing 11:55:09 20 Mar 2017 UTC 11:55:09 20 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 11:55:10 20 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 11:55:10 20 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:55:10 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:55:10 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:419 calls_made:1 call_cycle:0 11:55:10 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:55:10 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:419 calls_made:1 call_cycle:0 11:55:10 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:55:10 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:419 calls_made:1 call_cycle:0 11:55:10 20 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:419 calls_made:1 call_cycle:0 2249.6700 -15801.8770 03/20/17 11:49:30 UTC) to sdrifter@soest.hawaii.edu 11:55:10 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:419 calls_made:1 call_cycle:0 11:55:10 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:55:10 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:419 calls_made:1 call_cycle:0 11:55:10 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:55:10 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:419 calls_made:1 call_cycle:0 11:55:10 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:55:10 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:419 calls_made:1 call_cycle:0 11:55:10 20 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:55:10 20 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:55:17 20 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:55:18 20 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:55:18 20 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 11:55:18 20 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:55:18 20 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:55:18 20 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 11:55:21 20 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0419lz 11:55:21 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0419lz.x00 11:55:21 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0419lz.x01 11:55:21 20 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0419lz.r in process_file_group 11:55:21 20 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260419.log 11:55:21 20 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 11:55:21 20 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0419dz 11:55:21 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0419dz.x00 11:55:21 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0419dz.x01 11:55:21 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0419dz.x02 11:55:21 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0419dz.x03 11:55:21 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0419dz.x04 11:55:21 20 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0419dz.r in process_file_group 11:55:21 20 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [419] 11:55:21 20 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [419] 11:55:21 20 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260419) for profiles 11:55:21 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 11:55:22 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/695) 694 to QC_BAD because CT out of water 11:55:22 20 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.061m) 11:55:22 20 Mar 2017 UTC: INFO: QC.py(365): Changed (4/695) 258 259 269 270 to QC_PROBABLY_BAD because raw temperature spikes 11:55:22 20 Mar 2017 UTC: INFO: QC.py(408): Changed (2/695) 258 259 to QC_PROBABLY_BAD because raw conductivity spikes 11:55:22 20 Mar 2017 UTC: INFO: QC.py(180): Changed (4/695) 258 259 269 270 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 11:55:22 20 Mar 2017 UTC: INFO: QC.py(180): Changed (1/695) 694 to QC_BAD because changed raw cond implies changed raw salinity 11:55:22 20 Mar 2017 UTC: INFO: QC.py(365): Changed (4/695) 258 259 269 270 to QC_INTERPOLATED because temperature spikes 11:55:22 20 Mar 2017 UTC: INFO: QC.py(408): Changed (2/695) 258 259 to QC_INTERPOLATED because conductivity spikes 11:55:22 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/695) 263:267 to QC_BAD because slow apogee CT flow 11:55:22 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/695) 1:6 to QC_BAD because prior to dive start 11:55:22 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/695) 695 to QC_BAD because end of climb 11:55:22 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/695) 1:6 263:267 694 695 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 11:55:22 20 Mar 2017 UTC: INFO: QC.py(180): Changed (13/695) 1:6 263:267 694 695 to QC_BAD because changed corrected salin implies changed speed 11:55:22 20 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 11:55:22 20 Mar 2017 UTC: INFO: QC.py(180): Changed (4/695) 258 259 269 270 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 11:55:22 20 Mar 2017 UTC: INFO: QC.py(180): Changed (4/695) 258 259 269 270 to QC_INTERPOLATED because changed corrected temp implies changed speed 11:55:22 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.76 cm/s 11:55:22 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.19 cm/s 11:55:22 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 11:55:22 20 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (194/695) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 11:55:22 20 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (194/695) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 11:55:22 20 Mar 2017 UTC: INFO: QC.py(180): Changed (13/695) 1:6 263:267 694 695 to QC_BAD because changed salinity implies changed optode oxygen 11:55:22 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 11:55:22 20 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 11:55:22 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 11:55:23 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 419: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.87% reduction 11:55:23 20 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.419 11:55:23 20 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:55:23 20 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:55:23 20 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:55:23 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 11:55:23 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 11:58:51 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 11:58:53 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 11:58:53 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 11:59:36 20 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:59:36 20 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:59:36 20 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:59:36 20 Mar 2017 UTC /home/sg626/p6260419.log /home/sg626/p6260419.eng /home/sg626/p6260419.asc /home/sg626/p6260419.pro /home/sg626/p6260419.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 11:59:36 20 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:59:36 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:59:36 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:59:36 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:59:36 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:59:36 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:59:36 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:59:36 20 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:59:36 20 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:59:36 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:59:36 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:59:36 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:59:36 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:59:36 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:59:36 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:59:36 20 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:59:36 20 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 11:59:36 20 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 11:59:36 20 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 11:59:36 20 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 11:59:36 20 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:59:36 20 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:59:36 20 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:59:36 20 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 11:59:36 20 Mar 2017 UTC 15:32:47 20 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 2772 15:32:47 20 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 15:35:40 20 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 2899 15:35:40 20 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 15:35:40 20 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 15:35:40 20 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 15:35:40 20 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 15:35:40 20 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170320053540 ] 15:35:40 20 Mar 2017 UTC: INFO: Base.py(1333): PID:2906 15:35:40 20 Mar 2017 UTC: INFO: Base.py(1375): Started processing 15:35:40 20 Mar 2017 UTC 15:35:40 20 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 15:35:42 20 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 15:35:42 20 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 15:35:42 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:35:42 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:420 calls_made:1 call_cycle:0 15:35:42 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:35:42 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:420 calls_made:1 call_cycle:0 15:35:42 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:35:42 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:420 calls_made:1 call_cycle:0 15:35:42 20 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:420 calls_made:1 call_cycle:0 2250.6470 -15801.9490 03/20/17 15:30:31 UTC) to sdrifter@soest.hawaii.edu 15:35:42 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:420 calls_made:1 call_cycle:0 15:35:42 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:35:42 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:420 calls_made:1 call_cycle:0 15:35:42 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:35:42 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:420 calls_made:1 call_cycle:0 15:35:42 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:35:42 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:420 calls_made:1 call_cycle:0 15:35:42 20 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:35:42 20 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 15:35:48 20 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 15:35:50 20 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 15:35:50 20 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 15:35:50 20 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 15:35:50 20 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 15:35:50 20 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 15:35:52 20 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0420lz 15:35:52 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0420lz.x00 15:35:52 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0420lz.x01 15:35:52 20 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0420lz.r in process_file_group 15:35:52 20 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260420.log 15:35:52 20 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 15:35:52 20 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0420dz 15:35:52 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0420dz.x00 15:35:52 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0420dz.x01 15:35:52 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0420dz.x02 15:35:52 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0420dz.x03 15:35:52 20 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0420dz.r in process_file_group 15:35:53 20 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [420] 15:35:53 20 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [420] 15:35:53 20 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260420) for profiles 15:35:53 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 15:35:53 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/626) 626 to QC_BAD because CT out of water 15:35:53 20 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.086m) 15:35:53 20 Mar 2017 UTC: INFO: QC.py(365): Changed (3/626) 2:4 to QC_PROBABLY_BAD because raw temperature spikes 15:35:53 20 Mar 2017 UTC: INFO: QC.py(377): Changed (1/626) 626 to QC_BAD because raw salinity below bound 15:35:53 20 Mar 2017 UTC: INFO: QC.py(180): Changed (3/626) 2:4 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 15:35:53 20 Mar 2017 UTC: INFO: QC.py(365): Changed (3/626) 2:4 to QC_INTERPOLATED because temperature spikes 15:35:53 20 Mar 2017 UTC: INFO: QC.py(377): Changed (1/626) 626 to QC_BAD because salinity below bound 15:35:53 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/626) 257:261 to QC_BAD because slow apogee CT flow 15:35:53 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/626) 1:6 to QC_BAD because prior to dive start 15:35:53 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/626) 1:6 257:261 626 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 15:35:53 20 Mar 2017 UTC: INFO: QC.py(180): Changed (12/626) 1:6 257:261 626 to QC_BAD because changed corrected salin implies changed speed 15:35:54 20 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 15:35:54 20 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 420 interp_salinity data_points in_between 425 431 % suspect thermal-inertia points 426:431 15:35:54 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.70 cm/s 15:35:54 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.41 cm/s 15:35:54 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 15:35:54 20 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (195/626) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 15:35:54 20 Mar 2017 UTC: INFO: QC.py(180): Changed (3/626) 2:4 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 15:35:54 20 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (195/626) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 15:35:54 20 Mar 2017 UTC: INFO: QC.py(180): Changed (3/626) 2:4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 15:35:54 20 Mar 2017 UTC: INFO: QC.py(180): Changed (12/626) 1:6 257:261 626 to QC_BAD because changed salinity implies changed optode oxygen 15:35:54 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 15:35:54 20 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 15:35:54 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 15:35:54 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 420: Data set size for profile, binned and kkyy files reduced by 12 points, a 1.92% reduction 15:35:54 20 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.420 15:35:54 20 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 15:35:54 20 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 15:35:54 20 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 15:35:55 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 15:35:55 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 15:39:25 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 15:39:27 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 15:39:27 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 15:40:10 20 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 15:40:10 20 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 15:40:10 20 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 15:40:10 20 Mar 2017 UTC /home/sg626/p6260420.log /home/sg626/p6260420.eng /home/sg626/p6260420.asc /home/sg626/p6260420.pro /home/sg626/p6260420.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 15:40:10 20 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 15:40:10 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:40:10 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:40:10 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:40:10 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:40:10 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:40:10 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:40:10 20 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:40:10 20 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 15:40:10 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:40:10 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:40:10 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:40:10 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:40:10 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:40:10 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:40:10 20 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:40:10 20 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 15:40:10 20 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 15:40:10 20 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 15:40:10 20 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 15:40:10 20 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 15:40:10 20 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 15:40:10 20 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 15:40:10 20 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 15:40:10 20 Mar 2017 UTC 19:29:11 20 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9088 19:29:11 20 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:32:18 20 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9285 19:32:18 20 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:32:18 20 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:32:18 20 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:32:18 20 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:32:18 20 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170320093217 ] 19:32:18 20 Mar 2017 UTC: INFO: Base.py(1333): PID:9293 19:32:18 20 Mar 2017 UTC: INFO: Base.py(1375): Started processing 19:32:18 20 Mar 2017 UTC 19:32:18 20 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:32:19 20 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:32:19 20 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:32:19 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:32:19 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:421 calls_made:1 call_cycle:0 19:32:19 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:32:19 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:421 calls_made:1 call_cycle:0 19:32:19 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:32:19 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:421 calls_made:1 call_cycle:0 19:32:19 20 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:421 calls_made:1 call_cycle:0 2248.4630 -15801.4280 03/20/17 19:26:54 UTC) to sdrifter@soest.hawaii.edu 19:32:19 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:421 calls_made:1 call_cycle:0 19:32:19 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:32:19 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:421 calls_made:1 call_cycle:0 19:32:19 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:32:19 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:421 calls_made:1 call_cycle:0 19:32:19 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:32:19 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:421 calls_made:1 call_cycle:0 19:32:19 20 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:32:19 20 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:32:26 20 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:32:27 20 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:32:27 20 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:32:27 20 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:32:27 20 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:32:27 20 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:32:30 20 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0421lz 19:32:30 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0421lz.x00 19:32:30 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0421lz.x01 19:32:30 20 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0421lz.r in process_file_group 19:32:30 20 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260421.log 19:32:30 20 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:32:30 20 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0421dz 19:32:30 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0421dz.x00 19:32:30 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0421dz.x01 19:32:30 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0421dz.x02 19:32:30 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0421dz.x03 19:32:30 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0421dz.x04 19:32:30 20 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0421dz.r in process_file_group 19:32:30 20 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [421] 19:32:30 20 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [421] 19:32:31 20 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260421) for profiles 19:32:31 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 19:32:31 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/694) 694 to QC_BAD because CT out of water 19:32:31 20 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.037m) 19:32:31 20 Mar 2017 UTC: INFO: QC.py(365): Changed (2/694) 2 693 to QC_PROBABLY_BAD because raw temperature spikes 19:32:31 20 Mar 2017 UTC: INFO: QC.py(408): Changed (1/694) 2 to QC_PROBABLY_BAD because raw conductivity spikes 19:32:31 20 Mar 2017 UTC: INFO: QC.py(180): Changed (2/694) 2 693 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:32:31 20 Mar 2017 UTC: INFO: QC.py(180): Changed (1/694) 694 to QC_BAD because changed raw cond implies changed raw salinity 19:32:31 20 Mar 2017 UTC: INFO: QC.py(365): Changed (2/694) 2 693 to QC_INTERPOLATED because temperature spikes 19:32:31 20 Mar 2017 UTC: INFO: QC.py(408): Changed (1/694) 2 to QC_INTERPOLATED because conductivity spikes 19:32:31 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/694) 263:267 to QC_BAD because slow apogee CT flow 19:32:31 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/694) 1:6 to QC_BAD because prior to dive start 19:32:31 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/694) 1:6 263:267 694 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:32:31 20 Mar 2017 UTC: INFO: QC.py(180): Changed (12/694) 1:6 263:267 694 to QC_BAD because changed corrected salin implies changed speed 19:32:31 20 Mar 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 693 19:32:32 20 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:32:32 20 Mar 2017 UTC: INFO: QC.py(180): Changed (1/694) 693 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 19:32:32 20 Mar 2017 UTC: INFO: QC.py(180): Changed (1/694) 693 to QC_INTERPOLATED because changed corrected temp implies changed speed 19:32:32 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.36 cm/s 19:32:32 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.28 cm/s 19:32:32 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:32:32 20 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (204/694) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:32:32 20 Mar 2017 UTC: INFO: QC.py(180): Changed (2/694) 2 693 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 19:32:32 20 Mar 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/694) 693 to QC_BAD because slow flow in SBE43 19:32:32 20 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (204/694) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 19:32:32 20 Mar 2017 UTC: INFO: QC.py(180): Changed (2/694) 2 693 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 19:32:32 20 Mar 2017 UTC: INFO: QC.py(180): Changed (12/694) 1:6 263:267 694 to QC_BAD because changed salinity implies changed optode oxygen 19:32:32 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:32:32 20 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:32:32 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 19:32:32 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 421: Data set size for profile, binned and kkyy files reduced by 12 points, a 1.73% reduction 19:32:32 20 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.421 19:32:32 20 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:32:32 20 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:32:32 20 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:32:32 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 19:32:32 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 19:36:05 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 19:36:07 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 19:36:07 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 19:36:50 20 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:36:50 20 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:36:50 20 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:36:50 20 Mar 2017 UTC /home/sg626/p6260421.log /home/sg626/p6260421.eng /home/sg626/p6260421.asc /home/sg626/p6260421.pro /home/sg626/p6260421.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 19:36:50 20 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:36:50 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:36:50 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:36:50 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:36:50 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:36:50 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:36:50 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:36:50 20 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:36:50 20 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:36:50 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:36:50 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:36:50 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:36:50 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:36:50 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:36:50 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:36:50 20 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:36:50 20 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:36:50 20 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:36:50 20 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:36:50 20 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:36:50 20 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:36:50 20 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:36:50 20 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:36:50 20 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 19:36:50 20 Mar 2017 UTC 23:20:08 20 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 15850 23:20:08 20 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 23:23:14 20 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 15975 23:23:14 20 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:23:14 20 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:23:14 20 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:23:14 20 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:23:14 20 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170320132314 ] 23:23:14 20 Mar 2017 UTC: INFO: Base.py(1333): PID:15983 23:23:15 20 Mar 2017 UTC: INFO: Base.py(1375): Started processing 23:23:15 20 Mar 2017 UTC 23:23:15 20 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:23:16 20 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:23:16 20 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:23:16 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:23:16 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:422 calls_made:1 call_cycle:0 23:23:16 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:23:16 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:422 calls_made:1 call_cycle:0 23:23:16 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:23:16 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:422 calls_made:1 call_cycle:0 23:23:16 20 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:422 calls_made:1 call_cycle:0 2246.1170 -15801.1890 03/20/17 23:17:48 UTC) to sdrifter@soest.hawaii.edu 23:23:16 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:422 calls_made:1 call_cycle:0 23:23:16 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:23:16 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:422 calls_made:1 call_cycle:0 23:23:16 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:23:16 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:422 calls_made:1 call_cycle:0 23:23:16 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:23:16 20 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:422 calls_made:1 call_cycle:0 23:23:16 20 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:23:16 20 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:23:23 20 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:23:24 20 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:23:24 20 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:23:24 20 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:23:24 20 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:23:24 20 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:23:27 20 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0422lz 23:23:27 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0422lz.x00 23:23:27 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0422lz.x01 23:23:27 20 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0422lz.r in process_file_group 23:23:27 20 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260422.log 23:23:27 20 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:23:27 20 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0422dz 23:23:27 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0422dz.x00 23:23:27 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0422dz.x01 23:23:27 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0422dz.x02 23:23:27 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0422dz.x03 23:23:27 20 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0422dz.x04 23:23:27 20 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0422dz.r in process_file_group 23:23:27 20 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [422] 23:23:27 20 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [422] 23:23:27 20 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260422) for profiles 23:23:27 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 23:23:27 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/665) 665 to QC_BAD because CT out of water 23:23:27 20 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.063m) 23:23:27 20 Mar 2017 UTC: INFO: QC.py(365): Changed (2/665) 263 663 to QC_PROBABLY_BAD because raw temperature spikes 23:23:27 20 Mar 2017 UTC: INFO: QC.py(377): Changed (1/665) 664 to QC_BAD because raw salinity below bound 23:23:27 20 Mar 2017 UTC: INFO: QC.py(388): Changed (1/665) 664 to QC_BAD because bad raw salinity indicates raw conductivity issues 23:23:27 20 Mar 2017 UTC: INFO: QC.py(408): Changed (2/665) 263 267 to QC_PROBABLY_BAD because raw conductivity spikes 23:23:27 20 Mar 2017 UTC: INFO: QC.py(180): Changed (2/665) 263 663 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 23:23:27 20 Mar 2017 UTC: INFO: QC.py(180): Changed (1/665) 267 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 23:23:27 20 Mar 2017 UTC: INFO: QC.py(180): Changed (1/665) 665 to QC_BAD because changed raw cond implies changed raw salinity 23:23:27 20 Mar 2017 UTC: INFO: QC.py(365): Changed (2/665) 263 663 to QC_INTERPOLATED because temperature spikes 23:23:27 20 Mar 2017 UTC: INFO: QC.py(377): Changed (1/665) 664 to QC_BAD because salinity below bound 23:23:27 20 Mar 2017 UTC: INFO: QC.py(388): Changed (1/665) 664 to QC_BAD because bad salinity indicates conductivity issues 23:23:27 20 Mar 2017 UTC: INFO: QC.py(408): Changed (2/665) 263 267 to QC_INTERPOLATED because conductivity spikes 23:23:27 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/665) 261:265 to QC_BAD because slow apogee CT flow 23:23:27 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/665) 1:6 to QC_BAD because prior to dive start 23:23:27 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/665) 1:6 261:265 664 665 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 23:23:27 20 Mar 2017 UTC: INFO: QC.py(180): Changed (13/665) 1:6 261:265 664 665 to QC_BAD because changed corrected salin implies changed speed 23:23:28 20 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 23:23:28 20 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 422 interp_salinity data_points in_between 388 399 % suspect thermal-inertia points 390 393 23:23:28 20 Mar 2017 UTC: INFO: QC.py(180): Changed (1/665) 663 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 23:23:28 20 Mar 2017 UTC: INFO: QC.py(180): Changed (1/665) 267 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 23:23:28 20 Mar 2017 UTC: INFO: QC.py(180): Changed (1/665) 663 to QC_INTERPOLATED because changed corrected temp implies changed speed 23:23:28 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.57 cm/s 23:23:28 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.13 cm/s 23:23:28 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 23:23:28 20 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (202/665) 134 135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 23:23:28 20 Mar 2017 UTC: INFO: QC.py(180): Changed (1/665) 663 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 23:23:28 20 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (202/665) 134 135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 23:23:28 20 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (3/665) 659 660 662 to QC_BAD because bad aa4330 oyxgen 23:23:28 20 Mar 2017 UTC: INFO: QC.py(180): Changed (1/665) 663 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 23:23:28 20 Mar 2017 UTC: INFO: QC.py(180): Changed (13/665) 1:6 261:265 664 665 to QC_BAD because changed salinity implies changed optode oxygen 23:23:28 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 23:23:28 20 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 23:23:28 20 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 23:23:29 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 422: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.95% reduction 23:23:29 20 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.422 23:23:29 20 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:23:29 20 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:23:29 20 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:23:29 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 23:23:29 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 23:27:01 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 23:27:03 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 23:27:03 20 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 23:27:46 20 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:27:46 20 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:27:46 20 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:27:46 20 Mar 2017 UTC /home/sg626/p6260422.log /home/sg626/p6260422.eng /home/sg626/p6260422.asc /home/sg626/p6260422.pro /home/sg626/p6260422.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 23:27:46 20 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:27:46 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:27:46 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:27:46 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:27:46 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:27:46 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:27:46 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:27:46 20 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:27:46 20 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:27:46 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:27:46 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:27:46 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:27:46 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:27:46 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:27:46 20 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:27:46 20 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:27:46 20 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:27:46 20 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:27:46 20 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:27:46 20 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:27:46 20 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:27:46 20 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:27:46 20 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:27:46 20 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 23:27:46 20 Mar 2017 UTC 03:13:19 21 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 22034 03:13:19 21 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:16:15 21 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 22164 03:16:15 21 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:16:15 21 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:16:15 21 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:16:15 21 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:16:15 21 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170320171615 ] 03:16:15 21 Mar 2017 UTC: INFO: Base.py(1333): PID:22172 03:16:15 21 Mar 2017 UTC: INFO: Base.py(1375): Started processing 03:16:15 21 Mar 2017 UTC 03:16:15 21 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:16:16 21 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:16:16 21 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:16:16 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:16:16 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:423 calls_made:1 call_cycle:0 03:16:16 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:16:16 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:423 calls_made:1 call_cycle:0 03:16:16 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:16:16 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:423 calls_made:1 call_cycle:0 03:16:16 21 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:423 calls_made:1 call_cycle:0 2243.9040 -15801.3420 03/21/17 03:11:00 UTC) to sdrifter@soest.hawaii.edu 03:16:17 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:423 calls_made:1 call_cycle:0 03:16:17 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:16:17 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:423 calls_made:1 call_cycle:0 03:16:17 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:16:17 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:423 calls_made:1 call_cycle:0 03:16:17 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:16:17 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:423 calls_made:1 call_cycle:0 03:16:17 21 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:16:17 21 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:16:23 21 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:16:24 21 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:16:24 21 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:16:24 21 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:16:24 21 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:16:24 21 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:16:27 21 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0423lz 03:16:27 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0423lz.x00 03:16:27 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0423lz.x01 03:16:27 21 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0423lz.r in process_file_group 03:16:27 21 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260423.log 03:16:27 21 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:16:27 21 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0423dz 03:16:27 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0423dz.x00 03:16:27 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0423dz.x01 03:16:27 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0423dz.x02 03:16:27 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0423dz.x03 03:16:27 21 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0423dz.r in process_file_group 03:16:28 21 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [423] 03:16:28 21 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [423] 03:16:28 21 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260423) for profiles 03:16:28 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 03:16:28 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/646) 644:646 to QC_BAD because CT out of water 03:16:28 21 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.044m) 03:16:28 21 Mar 2017 UTC: INFO: QC.py(365): Changed (1/646) 645 to QC_PROBABLY_BAD because raw temperature spikes 03:16:28 21 Mar 2017 UTC: INFO: QC.py(408): Changed (1/646) 2 to QC_PROBABLY_BAD because raw conductivity spikes 03:16:28 21 Mar 2017 UTC: INFO: QC.py(180): Changed (1/646) 645 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 03:16:28 21 Mar 2017 UTC: INFO: QC.py(180): Changed (1/646) 2 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 03:16:28 21 Mar 2017 UTC: INFO: QC.py(180): Changed (3/646) 644:646 to QC_BAD because changed raw cond implies changed raw salinity 03:16:28 21 Mar 2017 UTC: INFO: QC.py(365): Changed (1/646) 645 to QC_INTERPOLATED because temperature spikes 03:16:28 21 Mar 2017 UTC: INFO: QC.py(408): Changed (1/646) 2 to QC_INTERPOLATED because conductivity spikes 03:16:28 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/646) 269:273 to QC_BAD because slow apogee CT flow 03:16:28 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/646) 1:6 to QC_BAD because prior to dive start 03:16:28 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/646) 1:6 269:273 644:646 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:16:28 21 Mar 2017 UTC: INFO: QC.py(180): Changed (14/646) 1:6 269:273 644:646 to QC_BAD because changed corrected salin implies changed speed 03:16:29 21 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 03:16:29 21 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 423 interp_salinity data_points in_between 451 458 % suspect thermal-inertia points 452 454:458 03:16:29 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.82 cm/s 03:16:29 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.41 cm/s 03:16:29 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:16:29 21 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (210/646) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:16:29 21 Mar 2017 UTC: INFO: QC.py(180): Changed (1/646) 645 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:16:29 21 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (210/646) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 03:16:29 21 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/646) 645 to QC_BAD because bad aa4330 oyxgen 03:16:29 21 Mar 2017 UTC: INFO: QC.py(180): Changed (13/646) 1:6 269:273 644 646 to QC_BAD because changed salinity implies changed optode oxygen 03:16:29 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:16:29 21 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:16:29 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 03:16:29 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 423: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.17% reduction 03:16:29 21 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.423 03:16:29 21 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:16:29 21 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:16:29 21 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:16:29 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 03:16:29 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 03:20:03 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 03:20:04 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 03:20:04 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 03:20:48 21 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:20:48 21 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:20:48 21 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:20:48 21 Mar 2017 UTC /home/sg626/p6260423.log /home/sg626/p6260423.eng /home/sg626/p6260423.asc /home/sg626/p6260423.pro /home/sg626/p6260423.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 03:20:48 21 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:20:48 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:20:48 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:20:48 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:20:48 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:20:48 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:20:48 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:20:48 21 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:20:48 21 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:20:48 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:20:48 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:20:48 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:20:48 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:20:48 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:20:48 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:20:48 21 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:20:48 21 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:20:48 21 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:20:48 21 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:20:48 21 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:20:48 21 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:20:48 21 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:20:48 21 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:20:48 21 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 03:20:48 21 Mar 2017 UTC 07:10:10 21 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 28359 07:10:10 21 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:13:20 21 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 28547 07:13:20 21 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:13:20 21 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:13:20 21 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:13:20 21 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:13:20 21 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170320211319 ] 07:13:20 21 Mar 2017 UTC: INFO: Base.py(1333): PID:28554 07:13:21 21 Mar 2017 UTC: INFO: Base.py(1375): Started processing 07:13:21 21 Mar 2017 UTC 07:13:21 21 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:13:22 21 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:13:22 21 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:13:22 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:13:22 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:424 calls_made:1 call_cycle:0 07:13:22 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:13:22 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:424 calls_made:1 call_cycle:0 07:13:22 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:13:22 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:424 calls_made:1 call_cycle:0 07:13:22 21 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:424 calls_made:1 call_cycle:0 2241.8990 -15801.5830 03/21/17 07:07:54 UTC) to sdrifter@soest.hawaii.edu 07:13:22 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:424 calls_made:1 call_cycle:0 07:13:22 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:13:22 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:424 calls_made:1 call_cycle:0 07:13:22 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:13:22 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:424 calls_made:1 call_cycle:0 07:13:22 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:13:22 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:424 calls_made:1 call_cycle:0 07:13:22 21 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:13:22 21 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:13:29 21 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:13:30 21 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:13:30 21 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:13:30 21 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:13:30 21 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:13:30 21 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:13:33 21 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0424lz 07:13:33 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0424lz.x00 07:13:33 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0424lz.x01 07:13:33 21 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0424lz.r in process_file_group 07:13:33 21 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260424.log 07:13:33 21 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:13:33 21 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0424dz 07:13:33 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0424dz.x00 07:13:33 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0424dz.x01 07:13:33 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0424dz.x02 07:13:33 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0424dz.x03 07:13:33 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0424dz.x04 07:13:33 21 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0424dz.r in process_file_group 07:13:33 21 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [424] 07:13:33 21 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [424] 07:13:33 21 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260424) for profiles 07:13:33 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 07:13:33 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/693) 690 691 to QC_BAD because CT out of water 07:13:33 21 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.070m) 07:13:33 21 Mar 2017 UTC: INFO: QC.py(365): Changed (3/693) 4 691 692 to QC_PROBABLY_BAD because raw temperature spikes 07:13:33 21 Mar 2017 UTC: INFO: QC.py(377): Changed (2/693) 691 692 to QC_BAD because raw salinity below bound 07:13:33 21 Mar 2017 UTC: INFO: QC.py(408): Changed (1/693) 692 to QC_PROBABLY_BAD because raw conductivity spikes 07:13:33 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/693) 693 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 07:13:33 21 Mar 2017 UTC: INFO: QC.py(180): Changed (1/693) 4 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:13:33 21 Mar 2017 UTC: INFO: QC.py(180): Changed (2/693) 690 693 to QC_BAD because changed raw cond implies changed raw salinity 07:13:33 21 Mar 2017 UTC: INFO: QC.py(365): Changed (3/693) 4 691 692 to QC_INTERPOLATED because temperature spikes 07:13:33 21 Mar 2017 UTC: INFO: QC.py(377): Changed (2/693) 691 692 to QC_BAD because salinity below bound 07:13:33 21 Mar 2017 UTC: INFO: QC.py(388): Changed (1/693) 692 to QC_BAD because bad salinity indicates conductivity issues 07:13:33 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/693) 693 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 07:13:33 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/693) 266:270 to QC_BAD because slow apogee CT flow 07:13:33 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/693) 1:6 to QC_BAD because prior to dive start 07:13:33 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/693) 689 to QC_BAD because end of climb 07:13:33 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/693) 1:6 266:270 689:693 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:13:33 21 Mar 2017 UTC: INFO: QC.py(180): Changed (16/693) 1:6 266:270 689:693 to QC_BAD because changed corrected salin implies changed speed 07:13:34 21 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:13:34 21 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 424 interp_salinity data_points in_between 428 438 % suspect thermal-inertia points 435 07:13:34 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.09 cm/s 07:13:34 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.25 cm/s 07:13:34 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:13:34 21 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (206/693) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:13:34 21 Mar 2017 UTC: INFO: QC.py(180): Changed (3/693) 4 691 692 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:13:34 21 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (206/693) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 07:13:34 21 Mar 2017 UTC: INFO: QC.py(180): Changed (3/693) 4 691 692 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:13:34 21 Mar 2017 UTC: INFO: QC.py(180): Changed (16/693) 1:6 266:270 689:693 to QC_BAD because changed salinity implies changed optode oxygen 07:13:34 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:13:34 21 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:13:34 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 07:13:35 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 424: Data set size for profile, binned and kkyy files reduced by 16 points, a 2.31% reduction 07:13:35 21 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.424 07:13:35 21 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:13:35 21 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:13:35 21 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:13:35 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 07:13:35 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:17:07 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 07:17:08 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:17:08 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:17:52 21 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:17:52 21 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:17:52 21 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:17:52 21 Mar 2017 UTC /home/sg626/p6260424.log /home/sg626/p6260424.eng /home/sg626/p6260424.asc /home/sg626/p6260424.pro /home/sg626/p6260424.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:17:52 21 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:17:52 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:17:52 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:17:52 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:17:52 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:17:52 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:17:52 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:17:52 21 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:17:52 21 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:17:52 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:17:52 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:17:52 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:17:52 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:17:52 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:17:52 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:17:52 21 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:17:52 21 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:17:52 21 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:17:52 21 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:17:52 21 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:17:52 21 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:17:52 21 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:17:52 21 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:17:52 21 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 07:17:52 21 Mar 2017 UTC 10:55:38 21 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 2315 10:55:38 21 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:58:49 21 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 2437 10:58:49 21 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:58:49 21 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:58:49 21 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:58:49 21 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:58:49 21 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170321005848 ] 10:58:49 21 Mar 2017 UTC: INFO: Base.py(1333): PID:2445 10:58:49 21 Mar 2017 UTC: INFO: Base.py(1375): Started processing 10:58:49 21 Mar 2017 UTC 10:58:49 21 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:58:50 21 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:58:50 21 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:58:50 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:58:50 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:425 calls_made:1 call_cycle:0 10:58:50 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:58:50 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:425 calls_made:1 call_cycle:0 10:58:50 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:58:50 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:425 calls_made:1 call_cycle:0 10:58:50 21 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:425 calls_made:1 call_cycle:0 2239.9410 -15801.6670 03/21/17 10:53:22 UTC) to sdrifter@soest.hawaii.edu 10:58:50 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:425 calls_made:1 call_cycle:0 10:58:50 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:58:50 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:425 calls_made:1 call_cycle:0 10:58:50 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:58:50 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:425 calls_made:1 call_cycle:0 10:58:50 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:58:50 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:425 calls_made:1 call_cycle:0 10:58:50 21 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:58:50 21 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:58:57 21 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:58:58 21 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:58:58 21 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:58:58 21 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:58:58 21 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:58:58 21 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:59:01 21 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0425lz 10:59:01 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0425lz.x00 10:59:01 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0425lz.x01 10:59:01 21 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0425lz.r in process_file_group 10:59:01 21 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260425.log 10:59:01 21 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:59:01 21 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0425dz 10:59:01 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0425dz.x00 10:59:01 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0425dz.x01 10:59:01 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0425dz.x02 10:59:01 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0425dz.x03 10:59:01 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0425dz.x04 10:59:01 21 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0425dz.r in process_file_group 10:59:01 21 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [425] 10:59:01 21 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [425] 10:59:01 21 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260425) for profiles 10:59:01 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 10:59:02 21 Mar 2017 UTC: INFO: QC.py(365): Changed (3/680) 2 3 270 to QC_PROBABLY_BAD because raw temperature spikes 10:59:02 21 Mar 2017 UTC: INFO: QC.py(180): Changed (3/680) 2 3 270 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 10:59:02 21 Mar 2017 UTC: INFO: QC.py(365): Changed (3/680) 2 3 270 to QC_INTERPOLATED because temperature spikes 10:59:02 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/680) 266:270 to QC_BAD because slow apogee CT flow 10:59:02 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/680) 1:6 to QC_BAD because prior to dive start 10:59:02 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/680) 1:6 266:270 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:59:02 21 Mar 2017 UTC: INFO: QC.py(180): Changed (11/680) 1:6 266:270 to QC_BAD because changed corrected salin implies changed speed 10:59:02 21 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 10:59:02 21 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 425 interp_salinity data_points in_between 426 433 % suspect thermal-inertia points 429:431 10:59:02 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.55 cm/s 10:59:02 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.04 cm/s 10:59:02 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:59:02 21 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (193/680) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:59:02 21 Mar 2017 UTC: INFO: QC.py(180): Changed (2/680) 2 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 10:59:02 21 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (193/680) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 10:59:02 21 Mar 2017 UTC: INFO: QC.py(180): Changed (2/680) 2 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 10:59:02 21 Mar 2017 UTC: INFO: QC.py(180): Changed (11/680) 1:6 266:270 to QC_BAD because changed salinity implies changed optode oxygen 10:59:02 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:59:02 21 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:59:02 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 10:59:03 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 425: Data set size for profile, binned and kkyy files reduced by 11 points, a 1.62% reduction 10:59:03 21 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.425 10:59:03 21 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:59:03 21 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:59:03 21 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:59:03 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 10:59:03 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 11:02:37 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 11:02:38 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 11:02:38 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 11:03:23 21 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:03:23 21 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:03:23 21 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:03:23 21 Mar 2017 UTC /home/sg626/p6260425.log /home/sg626/p6260425.eng /home/sg626/p6260425.asc /home/sg626/p6260425.pro /home/sg626/p6260425.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 11:03:23 21 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:03:23 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:03:23 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:03:23 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:03:23 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:03:23 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:03:23 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:03:23 21 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:03:23 21 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:03:23 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:03:23 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:03:23 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:03:23 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:03:23 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:03:23 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:03:23 21 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:03:23 21 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 11:03:23 21 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 11:03:23 21 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 11:03:23 21 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 11:03:23 21 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:03:23 21 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:03:23 21 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:03:23 21 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 11:03:23 21 Mar 2017 UTC 14:42:44 21 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 8341 14:42:44 21 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:45:53 21 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 8416 14:45:53 21 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:45:53 21 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 14:45:53 21 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 14:45:53 21 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:45:53 21 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170321044552 ] 14:45:53 21 Mar 2017 UTC: INFO: Base.py(1333): PID:8424 14:45:53 21 Mar 2017 UTC: INFO: Base.py(1375): Started processing 14:45:53 21 Mar 2017 UTC 14:45:53 21 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 14:45:54 21 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 14:45:54 21 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:45:54 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:45:54 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:426 calls_made:1 call_cycle:0 14:45:54 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:45:54 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:426 calls_made:1 call_cycle:0 14:45:54 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:45:54 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:426 calls_made:1 call_cycle:0 14:45:54 21 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:426 calls_made:1 call_cycle:0 2238.1800 -15801.9030 03/21/17 14:40:26 UTC) to sdrifter@soest.hawaii.edu 14:45:54 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:426 calls_made:1 call_cycle:0 14:45:54 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:45:54 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:426 calls_made:1 call_cycle:0 14:45:54 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:45:54 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:426 calls_made:1 call_cycle:0 14:45:54 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:45:54 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:426 calls_made:1 call_cycle:0 14:45:54 21 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:45:54 21 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:46:01 21 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:46:02 21 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:46:02 21 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 14:46:02 21 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:46:02 21 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:46:02 21 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 14:46:05 21 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0426lz 14:46:05 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0426lz.x00 14:46:05 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0426lz.x01 14:46:05 21 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0426lz.r in process_file_group 14:46:05 21 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260426.log 14:46:05 21 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 14:46:05 21 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0426dz 14:46:05 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0426dz.x00 14:46:05 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0426dz.x01 14:46:05 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0426dz.x02 14:46:05 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0426dz.x03 14:46:05 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0426dz.x04 14:46:05 21 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0426dz.r in process_file_group 14:46:06 21 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [426] 14:46:06 21 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [426] 14:46:06 21 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260426) for profiles 14:46:06 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 14:46:06 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/687) 685:687 to QC_BAD because CT out of water 14:46:06 21 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.080m) 14:46:06 21 Mar 2017 UTC: INFO: QC.py(365): Changed (3/687) 257 685 686 to QC_PROBABLY_BAD because raw temperature spikes 14:46:06 21 Mar 2017 UTC: INFO: QC.py(408): Changed (1/687) 257 to QC_PROBABLY_BAD because raw conductivity spikes 14:46:06 21 Mar 2017 UTC: INFO: QC.py(180): Changed (3/687) 257 685 686 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:46:06 21 Mar 2017 UTC: INFO: QC.py(180): Changed (3/687) 685:687 to QC_BAD because changed raw cond implies changed raw salinity 14:46:06 21 Mar 2017 UTC: INFO: QC.py(365): Changed (3/687) 257 685 686 to QC_INTERPOLATED because temperature spikes 14:46:06 21 Mar 2017 UTC: INFO: QC.py(408): Changed (1/687) 257 to QC_INTERPOLATED because conductivity spikes 14:46:06 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/687) 251:255 to QC_BAD because slow apogee CT flow 14:46:06 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/687) 1:6 to QC_BAD because prior to dive start 14:46:06 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/687) 684 to QC_BAD because end of climb 14:46:06 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/687) 1:6 251:255 684:687 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:46:06 21 Mar 2017 UTC: INFO: QC.py(180): Changed (15/687) 1:6 251:255 684:687 to QC_BAD because changed corrected salin implies changed speed 14:46:07 21 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:46:07 21 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 426 interp_salinity data_points in_between 430 437 % suspect thermal-inertia points 431 14:46:07 21 Mar 2017 UTC: INFO: QC.py(180): Changed (1/687) 257 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 14:46:07 21 Mar 2017 UTC: INFO: QC.py(180): Changed (1/687) 257 to QC_INTERPOLATED because changed corrected temp implies changed speed 14:46:07 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.89 cm/s 14:46:07 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.40 cm/s 14:46:07 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:46:07 21 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (191/687) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:46:07 21 Mar 2017 UTC: INFO: QC.py(180): Changed (2/687) 685 686 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 14:46:07 21 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (191/687) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 14:46:07 21 Mar 2017 UTC: INFO: QC.py(180): Changed (2/687) 685 686 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 14:46:07 21 Mar 2017 UTC: INFO: QC.py(180): Changed (15/687) 1:6 251:255 684:687 to QC_BAD because changed salinity implies changed optode oxygen 14:46:07 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:46:07 21 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:46:07 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 14:46:07 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 426: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.18% reduction 14:46:07 21 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.426 14:46:07 21 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:46:07 21 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:46:07 21 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:46:07 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 14:46:07 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 14:49:42 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 14:49:44 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 14:49:44 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 14:50:28 21 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:50:28 21 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:50:28 21 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:50:28 21 Mar 2017 UTC /home/sg626/p6260426.log /home/sg626/p6260426.eng /home/sg626/p6260426.asc /home/sg626/p6260426.pro /home/sg626/p6260426.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 14:50:28 21 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:50:28 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:50:28 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:50:28 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:50:28 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:50:28 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:50:28 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:50:28 21 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:50:28 21 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:50:28 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:50:28 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:50:28 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:50:28 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:50:28 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:50:28 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:50:28 21 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:50:28 21 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:50:28 21 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:50:28 21 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:50:28 21 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:50:28 21 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:50:28 21 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:50:28 21 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:50:28 21 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 14:50:28 21 Mar 2017 UTC 18:43:14 21 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 14609 18:43:14 21 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 18:46:20 21 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 14736 18:46:20 21 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:46:20 21 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 18:46:20 21 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 18:46:20 21 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:46:20 21 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170321084619 ] 18:46:20 21 Mar 2017 UTC: INFO: Base.py(1333): PID:14744 18:46:20 21 Mar 2017 UTC: INFO: Base.py(1375): Started processing 18:46:20 21 Mar 2017 UTC 18:46:20 21 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 18:46:21 21 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 18:46:21 21 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:46:21 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:46:21 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:427 calls_made:1 call_cycle:0 18:46:21 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:46:21 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:427 calls_made:1 call_cycle:0 18:46:21 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:46:21 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:427 calls_made:1 call_cycle:0 18:46:21 21 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:427 calls_made:1 call_cycle:0 2239.0780 -15802.1460 03/21/17 18:41:00 UTC) to sdrifter@soest.hawaii.edu 18:46:21 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:427 calls_made:1 call_cycle:0 18:46:21 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:46:21 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:427 calls_made:1 call_cycle:0 18:46:21 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:46:21 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:427 calls_made:1 call_cycle:0 18:46:21 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:46:21 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:427 calls_made:1 call_cycle:0 18:46:21 21 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:46:21 21 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:46:28 21 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:46:29 21 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:46:29 21 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 18:46:29 21 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:46:29 21 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:46:29 21 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 18:46:32 21 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0427lz 18:46:32 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0427lz.x00 18:46:32 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0427lz.x01 18:46:32 21 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0427lz.r in process_file_group 18:46:32 21 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260427.log 18:46:32 21 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 18:46:32 21 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0427dz 18:46:32 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0427dz.x00 18:46:32 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0427dz.x01 18:46:32 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0427dz.x02 18:46:32 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0427dz.x03 18:46:32 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0427dz.x04 18:46:32 21 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0427dz.r in process_file_group 18:46:32 21 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [427] 18:46:32 21 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [427] 18:46:32 21 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260427) for profiles 18:46:32 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 18:46:33 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/721) 718:720 to QC_BAD because CT out of water 18:46:33 21 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.020m) 18:46:33 21 Mar 2017 UTC: INFO: QC.py(365): Changed (6/721) 262 263 273 718:720 to QC_PROBABLY_BAD because raw temperature spikes 18:46:33 21 Mar 2017 UTC: INFO: QC.py(377): Changed (1/721) 721 to QC_BAD because raw salinity below bound 18:46:33 21 Mar 2017 UTC: INFO: QC.py(388): Changed (1/721) 721 to QC_BAD because bad raw salinity indicates raw conductivity issues 18:46:33 21 Mar 2017 UTC: INFO: QC.py(408): Changed (1/721) 273 to QC_PROBABLY_BAD because raw conductivity spikes 18:46:33 21 Mar 2017 UTC: INFO: QC.py(180): Changed (6/721) 262 263 273 718:720 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 18:46:33 21 Mar 2017 UTC: INFO: QC.py(180): Changed (3/721) 718:720 to QC_BAD because changed raw cond implies changed raw salinity 18:46:33 21 Mar 2017 UTC: INFO: QC.py(365): Changed (6/721) 262 263 273 718:720 to QC_INTERPOLATED because temperature spikes 18:46:33 21 Mar 2017 UTC: INFO: QC.py(377): Changed (1/721) 721 to QC_BAD because salinity below bound 18:46:33 21 Mar 2017 UTC: INFO: QC.py(388): Changed (1/721) 721 to QC_BAD because bad salinity indicates conductivity issues 18:46:33 21 Mar 2017 UTC: INFO: QC.py(408): Changed (1/721) 273 to QC_INTERPOLATED because conductivity spikes 18:46:33 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/721) 271:275 to QC_BAD because slow apogee CT flow 18:46:33 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/721) 1:6 to QC_BAD because prior to dive start 18:46:33 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/721) 1:6 271:275 718:721 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 18:46:33 21 Mar 2017 UTC: INFO: QC.py(180): Changed (15/721) 1:6 271:275 718:721 to QC_BAD because changed corrected salin implies changed speed 18:46:33 21 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 18:46:33 21 Mar 2017 UTC: INFO: QC.py(180): Changed (2/721) 262 263 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 18:46:33 21 Mar 2017 UTC: INFO: QC.py(180): Changed (2/721) 262 263 to QC_INTERPOLATED because changed corrected temp implies changed speed 18:46:33 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 27.98 cm/s 18:46:33 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.12 cm/s 18:46:33 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 18:46:33 21 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (206/721) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 18:46:33 21 Mar 2017 UTC: INFO: QC.py(180): Changed (3/721) 718:720 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 18:46:33 21 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (206/721) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 18:46:33 21 Mar 2017 UTC: INFO: QC.py(180): Changed (3/721) 718:720 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 18:46:33 21 Mar 2017 UTC: INFO: QC.py(180): Changed (15/721) 1:6 271:275 718:721 to QC_BAD because changed salinity implies changed optode oxygen 18:46:33 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 18:46:33 21 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 18:46:33 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 18:46:34 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 427: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.08% reduction 18:46:34 21 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.427 18:46:34 21 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:46:34 21 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:46:34 21 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:46:34 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 18:46:34 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 18:50:10 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 18:50:11 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 18:50:11 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 18:50:55 21 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:50:55 21 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:50:55 21 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:50:55 21 Mar 2017 UTC /home/sg626/p6260427.log /home/sg626/p6260427.eng /home/sg626/p6260427.asc /home/sg626/p6260427.pro /home/sg626/p6260427.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 18:50:55 21 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:50:55 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:50:55 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:50:55 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:50:55 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:50:55 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:50:55 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:50:55 21 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:50:55 21 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:50:55 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:50:55 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:50:55 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:50:55 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:50:55 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:50:55 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:50:55 21 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:50:55 21 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 18:50:55 21 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 18:50:55 21 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 18:50:55 21 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 18:50:55 21 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:50:55 21 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:50:55 21 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:50:55 21 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 18:50:55 21 Mar 2017 UTC 22:30:04 21 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 20895 22:30:04 21 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:32:59 21 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 21017 22:32:59 21 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:32:59 21 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:32:59 21 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:32:59 21 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:32:59 21 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170321123259 ] 22:32:59 21 Mar 2017 UTC: INFO: Base.py(1333): PID:21024 22:32:59 21 Mar 2017 UTC: INFO: Base.py(1375): Started processing 22:32:59 21 Mar 2017 UTC 22:32:59 21 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:33:00 21 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:33:00 21 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:33:00 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:33:00 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:428 calls_made:1 call_cycle:0 22:33:00 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:33:00 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:428 calls_made:1 call_cycle:0 22:33:00 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:33:00 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:428 calls_made:1 call_cycle:0 22:33:00 21 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:428 calls_made:1 call_cycle:0 2240.1090 -15802.1860 03/21/17 22:27:19 UTC) to sdrifter@soest.hawaii.edu 22:33:01 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:428 calls_made:1 call_cycle:0 22:33:01 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:33:01 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:428 calls_made:1 call_cycle:0 22:33:01 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:33:01 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:428 calls_made:1 call_cycle:0 22:33:01 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:33:01 21 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:428 calls_made:1 call_cycle:0 22:33:01 21 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:33:01 21 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:33:07 21 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:33:08 21 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:33:08 21 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:33:08 21 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:33:08 21 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:33:08 21 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:33:11 21 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0428lz 22:33:11 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0428lz.x00 22:33:11 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0428lz.x01 22:33:11 21 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0428lz.r in process_file_group 22:33:11 21 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260428.log 22:33:11 21 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 22:33:11 21 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0428dz 22:33:11 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0428dz.x00 22:33:11 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0428dz.x01 22:33:11 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0428dz.x02 22:33:11 21 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0428dz.x03 22:33:11 21 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0428dz.r in process_file_group 22:33:12 21 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [428] 22:33:12 21 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [428] 22:33:12 21 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260428) for profiles 22:33:12 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 22:33:12 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/631) 631 to QC_BAD because CT out of water 22:33:12 21 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.006m) 22:33:12 21 Mar 2017 UTC: INFO: QC.py(365): Changed (6/631) 2 3 215 216 265 305 to QC_PROBABLY_BAD because raw temperature spikes 22:33:12 21 Mar 2017 UTC: INFO: QC.py(408): Changed (3/631) 215 261 265 to QC_PROBABLY_BAD because raw conductivity spikes 22:33:12 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/631) 630 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 22:33:12 21 Mar 2017 UTC: INFO: QC.py(180): Changed (6/631) 2 3 215 216 265 305 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 22:33:12 21 Mar 2017 UTC: INFO: QC.py(180): Changed (1/631) 261 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 22:33:12 21 Mar 2017 UTC: INFO: QC.py(180): Changed (2/631) 630 631 to QC_BAD because changed raw cond implies changed raw salinity 22:33:12 21 Mar 2017 UTC: INFO: QC.py(365): Changed (6/631) 2 3 215 216 265 305 to QC_INTERPOLATED because temperature spikes 22:33:12 21 Mar 2017 UTC: INFO: QC.py(408): Changed (3/631) 215 261 265 to QC_INTERPOLATED because conductivity spikes 22:33:12 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/631) 630 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 22:33:12 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/631) 263:267 to QC_BAD because slow apogee CT flow 22:33:12 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/631) 1:6 to QC_BAD because prior to dive start 22:33:12 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/631) 1:6 263:267 630 631 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:33:12 21 Mar 2017 UTC: INFO: QC.py(180): Changed (13/631) 1:6 263:267 630 631 to QC_BAD because changed corrected salin implies changed speed 22:33:13 21 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:33:13 21 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 428 interp_salinity data_points in_between 374 399 % suspect thermal-inertia points 395:397 22:33:13 21 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 428 interp_salinity data_points in_between 401 411 % suspect thermal-inertia points 402:404 407:409 22:33:13 21 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 428 interp_salinity data_points in_between 413 416 % suspect thermal-inertia points 413:416 22:33:13 21 Mar 2017 UTC: INFO: QC.py(180): Changed (3/631) 215 216 305 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 22:33:13 21 Mar 2017 UTC: INFO: QC.py(180): Changed (1/631) 261 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 22:33:13 21 Mar 2017 UTC: INFO: QC.py(180): Changed (3/631) 215 216 305 to QC_INTERPOLATED because changed corrected temp implies changed speed 22:33:13 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.14 cm/s 22:33:13 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.30 cm/s 22:33:13 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:33:13 21 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (201/631) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:33:13 21 Mar 2017 UTC: INFO: QC.py(180): Changed (3/631) 2 3 216 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 22:33:13 21 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (201/631) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 22:33:13 21 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/631) 629 630 to QC_BAD because bad aa4330 oyxgen 22:33:13 21 Mar 2017 UTC: INFO: QC.py(180): Changed (3/631) 2 3 216 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 22:33:13 21 Mar 2017 UTC: INFO: QC.py(180): Changed (12/631) 1:6 263:267 631 to QC_BAD because changed salinity implies changed optode oxygen 22:33:13 21 Mar 2017 UTC: INFO: QC.py(180): Changed (1/631) 261 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 22:33:13 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:33:13 21 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 22:33:13 21 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 22:33:13 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 428: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.06% reduction 22:33:13 21 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.428 22:33:13 21 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:33:13 21 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:33:13 21 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:33:14 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 22:33:14 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 22:36:48 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 22:36:49 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 22:36:49 21 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 22:37:34 21 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:37:34 21 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:37:34 21 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:37:34 21 Mar 2017 UTC /home/sg626/p6260428.log /home/sg626/p6260428.eng /home/sg626/p6260428.asc /home/sg626/p6260428.pro /home/sg626/p6260428.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 22:37:34 21 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:37:34 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:37:34 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:37:34 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:37:34 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:37:34 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:37:34 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:37:34 21 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:37:34 21 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:37:34 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:37:34 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:37:34 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:37:34 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:37:34 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:37:34 21 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:37:34 21 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:37:34 21 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:37:34 21 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:37:34 21 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:37:34 21 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:37:34 21 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:37:34 21 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:37:34 21 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:37:34 21 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 22:37:34 21 Mar 2017 UTC 02:18:10 22 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 26763 02:18:10 22 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:21:20 22 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 26976 02:21:20 22 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:21:20 22 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:21:20 22 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:21:20 22 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:21:20 22 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170321162119 ] 02:21:20 22 Mar 2017 UTC: INFO: Base.py(1333): PID:26983 02:21:20 22 Mar 2017 UTC: INFO: Base.py(1375): Started processing 02:21:20 22 Mar 2017 UTC 02:21:20 22 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:21:21 22 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:21:21 22 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:21:21 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:21:21 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:429 calls_made:1 call_cycle:0 02:21:21 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:21:21 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:429 calls_made:1 call_cycle:0 02:21:21 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:21:21 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:429 calls_made:1 call_cycle:0 02:21:21 22 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:429 calls_made:1 call_cycle:0 2241.1380 -15802.0050 03/22/17 02:15:48 UTC) to sdrifter@soest.hawaii.edu 02:21:21 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:429 calls_made:1 call_cycle:0 02:21:21 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:21:21 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:429 calls_made:1 call_cycle:0 02:21:21 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:21:21 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:429 calls_made:1 call_cycle:0 02:21:21 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:21:21 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:429 calls_made:1 call_cycle:0 02:21:21 22 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:21:21 22 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:21:28 22 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:21:29 22 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:21:29 22 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:21:29 22 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:21:29 22 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:21:29 22 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:21:32 22 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0429lz 02:21:32 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0429lz.x00 02:21:32 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0429lz.x01 02:21:32 22 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0429lz.r in process_file_group 02:21:32 22 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260429.log 02:21:32 22 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 02:21:32 22 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0429dz 02:21:32 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0429dz.x00 02:21:32 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0429dz.x01 02:21:32 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0429dz.x02 02:21:32 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0429dz.x03 02:21:32 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0429dz.x04 02:21:32 22 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0429dz.r in process_file_group 02:21:32 22 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [429] 02:21:32 22 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [429] 02:21:33 22 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260429) for profiles 02:21:33 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 02:21:33 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/689) 688 689 to QC_BAD because CT out of water 02:21:33 22 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.043m) 02:21:33 22 Mar 2017 UTC: INFO: QC.py(365): Changed (3/689) 2 270 276 to QC_PROBABLY_BAD because raw temperature spikes 02:21:33 22 Mar 2017 UTC: INFO: QC.py(377): Changed (1/689) 689 to QC_BAD because raw salinity below bound 02:21:33 22 Mar 2017 UTC: INFO: QC.py(408): Changed (2/689) 2 270 to QC_PROBABLY_BAD because raw conductivity spikes 02:21:33 22 Mar 2017 UTC: INFO: QC.py(180): Changed (3/689) 2 270 276 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:21:33 22 Mar 2017 UTC: INFO: QC.py(180): Changed (1/689) 688 to QC_BAD because changed raw cond implies changed raw salinity 02:21:33 22 Mar 2017 UTC: INFO: QC.py(365): Changed (3/689) 2 270 276 to QC_INTERPOLATED because temperature spikes 02:21:33 22 Mar 2017 UTC: INFO: QC.py(377): Changed (1/689) 689 to QC_BAD because salinity below bound 02:21:33 22 Mar 2017 UTC: INFO: QC.py(408): Changed (2/689) 2 270 to QC_INTERPOLATED because conductivity spikes 02:21:33 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/689) 270:274 to QC_BAD because slow apogee CT flow 02:21:33 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/689) 1:7 to QC_BAD because prior to dive start 02:21:33 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/689) 686 687 to QC_BAD because end of climb 02:21:33 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/689) 1:7 270:274 686:689 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:21:33 22 Mar 2017 UTC: INFO: QC.py(180): Changed (16/689) 1:7 270:274 686:689 to QC_BAD because changed corrected salin implies changed speed 02:21:34 22 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:21:34 22 Mar 2017 UTC: INFO: QC.py(180): Changed (1/689) 276 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 02:21:34 22 Mar 2017 UTC: INFO: QC.py(180): Changed (1/689) 276 to QC_INTERPOLATED because changed corrected temp implies changed speed 02:21:34 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.85 cm/s 02:21:34 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.73 cm/s 02:21:34 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:21:34 22 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (195/689) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:21:34 22 Mar 2017 UTC: INFO: QC.py(180): Changed (2/689) 2 276 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:21:34 22 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (195/689) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 02:21:34 22 Mar 2017 UTC: INFO: QC.py(180): Changed (2/689) 2 276 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:21:34 22 Mar 2017 UTC: INFO: QC.py(180): Changed (16/689) 1:7 270:274 686:689 to QC_BAD because changed salinity implies changed optode oxygen 02:21:34 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:21:34 22 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:21:34 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 02:21:34 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 429: Data set size for profile, binned and kkyy files reduced by 16 points, a 2.32% reduction 02:21:34 22 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.429 02:21:34 22 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:21:34 22 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:21:34 22 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:21:34 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 02:21:34 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 02:25:09 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 02:25:11 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 02:25:11 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 02:25:56 22 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:25:56 22 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:25:56 22 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:25:56 22 Mar 2017 UTC /home/sg626/p6260429.log /home/sg626/p6260429.eng /home/sg626/p6260429.asc /home/sg626/p6260429.pro /home/sg626/p6260429.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 02:25:56 22 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:25:56 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:25:56 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:25:56 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:25:56 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:25:56 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:25:56 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:25:56 22 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:25:56 22 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:25:56 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:25:56 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:25:56 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:25:56 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:25:56 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:25:56 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:25:56 22 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:25:56 22 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:25:56 22 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:25:56 22 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:25:56 22 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:25:56 22 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:25:56 22 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:25:56 22 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:25:56 22 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 02:25:56 22 Mar 2017 UTC 06:13:52 22 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 1037 06:13:53 22 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:17:09 22 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 1170 06:17:09 22 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:17:09 22 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 06:17:09 22 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 06:17:09 22 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:17:09 22 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170321201708 ] 06:17:09 22 Mar 2017 UTC: INFO: Base.py(1333): PID:1178 06:17:09 22 Mar 2017 UTC: INFO: Base.py(1375): Started processing 06:17:09 22 Mar 2017 UTC 06:17:09 22 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 06:17:10 22 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 06:17:10 22 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:17:10 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:17:10 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:430 calls_made:1 call_cycle:0 06:17:10 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:17:10 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:430 calls_made:1 call_cycle:0 06:17:10 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:17:10 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:430 calls_made:1 call_cycle:0 06:17:10 22 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:430 calls_made:1 call_cycle:0 2242.2230 -15802.0770 03/22/17 06:11:38 UTC) to sdrifter@soest.hawaii.edu 06:17:10 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:430 calls_made:1 call_cycle:0 06:17:10 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:17:10 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:430 calls_made:1 call_cycle:0 06:17:10 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:17:10 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:430 calls_made:1 call_cycle:0 06:17:10 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:17:10 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:430 calls_made:1 call_cycle:0 06:17:10 22 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:17:10 22 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:17:17 22 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:17:18 22 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:17:18 22 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 06:17:18 22 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:17:18 22 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:17:18 22 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 06:17:21 22 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0430lz 06:17:21 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0430lz.x00 06:17:21 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0430lz.x01 06:17:21 22 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0430lz.r in process_file_group 06:17:21 22 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260430.log 06:17:21 22 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 06:17:21 22 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0430dz 06:17:21 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0430dz.x00 06:17:21 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0430dz.x01 06:17:21 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0430dz.x02 06:17:21 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0430dz.x03 06:17:21 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0430dz.x04 06:17:21 22 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0430dz.r in process_file_group 06:17:22 22 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [430] 06:17:22 22 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [430] 06:17:22 22 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260430) for profiles 06:17:22 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 06:17:22 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/695) 694 to QC_BAD because CT out of water 06:17:22 22 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.001m) 06:17:22 22 Mar 2017 UTC: INFO: QC.py(365): Changed (3/695) 3 269 694 to QC_PROBABLY_BAD because raw temperature spikes 06:17:22 22 Mar 2017 UTC: INFO: QC.py(377): Changed (1/695) 695 to QC_BAD because raw salinity below bound 06:17:22 22 Mar 2017 UTC: INFO: QC.py(388): Changed (1/695) 695 to QC_BAD because bad raw salinity indicates raw conductivity issues 06:17:22 22 Mar 2017 UTC: INFO: QC.py(408): Changed (1/695) 269 to QC_PROBABLY_BAD because raw conductivity spikes 06:17:22 22 Mar 2017 UTC: INFO: QC.py(180): Changed (3/695) 3 269 694 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 06:17:22 22 Mar 2017 UTC: INFO: QC.py(180): Changed (1/695) 694 to QC_BAD because changed raw cond implies changed raw salinity 06:17:22 22 Mar 2017 UTC: INFO: QC.py(365): Changed (3/695) 3 269 694 to QC_INTERPOLATED because temperature spikes 06:17:22 22 Mar 2017 UTC: INFO: QC.py(377): Changed (1/695) 695 to QC_BAD because salinity below bound 06:17:22 22 Mar 2017 UTC: INFO: QC.py(388): Changed (1/695) 695 to QC_BAD because bad salinity indicates conductivity issues 06:17:22 22 Mar 2017 UTC: INFO: QC.py(408): Changed (1/695) 269 to QC_INTERPOLATED because conductivity spikes 06:17:22 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/695) 267:271 to QC_BAD because slow apogee CT flow 06:17:22 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/695) 1:6 to QC_BAD because prior to dive start 06:17:22 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/695) 693 to QC_BAD because end of climb 06:17:22 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/695) 1:6 267:271 693:695 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 06:17:22 22 Mar 2017 UTC: INFO: QC.py(180): Changed (14/695) 1:6 267:271 693:695 to QC_BAD because changed corrected salin implies changed speed 06:17:23 22 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 06:17:23 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.88 cm/s 06:17:23 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.03 cm/s 06:17:23 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 06:17:23 22 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (205/695) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 06:17:23 22 Mar 2017 UTC: INFO: QC.py(180): Changed (2/695) 3 694 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 06:17:23 22 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (205/695) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 06:17:23 22 Mar 2017 UTC: INFO: QC.py(180): Changed (2/695) 3 694 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 06:17:23 22 Mar 2017 UTC: INFO: QC.py(180): Changed (14/695) 1:6 267:271 693:695 to QC_BAD because changed salinity implies changed optode oxygen 06:17:23 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 06:17:23 22 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 06:17:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 06:17:23 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 430: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.01% reduction 06:17:23 22 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.430 06:17:23 22 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:17:23 22 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:17:23 22 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:17:24 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 06:17:24 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 06:21:00 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 06:21:02 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 06:21:02 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 06:21:47 22 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:21:47 22 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:21:47 22 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 06:21:47 22 Mar 2017 UTC /home/sg626/p6260430.log /home/sg626/p6260430.eng /home/sg626/p6260430.asc /home/sg626/p6260430.pro /home/sg626/p6260430.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 06:21:47 22 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:21:47 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:21:47 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:21:47 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:21:47 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:21:47 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:21:47 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:21:47 22 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:21:47 22 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:21:47 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:21:47 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:21:47 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:21:47 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:21:47 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:21:47 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:21:47 22 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:21:47 22 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 06:21:47 22 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 06:21:47 22 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 06:21:47 22 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 06:21:47 22 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:21:47 22 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:21:47 22 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:21:47 22 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 06:21:47 22 Mar 2017 UTC 10:13:05 22 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 7912 10:13:05 22 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:16:15 22 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 8041 10:16:15 22 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:16:15 22 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:16:15 22 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:16:15 22 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:16:15 22 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170322001614 ] 10:16:15 22 Mar 2017 UTC: INFO: Base.py(1333): PID:8048 10:16:15 22 Mar 2017 UTC: INFO: Base.py(1375): Started processing 10:16:15 22 Mar 2017 UTC 10:16:15 22 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:16:16 22 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:16:16 22 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:16:16 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:16:16 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:431 calls_made:1 call_cycle:0 10:16:16 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:16:16 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:431 calls_made:1 call_cycle:0 10:16:16 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:16:16 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:431 calls_made:1 call_cycle:0 10:16:16 22 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:431 calls_made:1 call_cycle:0 2243.5450 -15801.9880 03/22/17 10:10:48 UTC) to sdrifter@soest.hawaii.edu 10:16:16 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:431 calls_made:1 call_cycle:0 10:16:16 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:16:16 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:431 calls_made:1 call_cycle:0 10:16:16 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:16:16 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:431 calls_made:1 call_cycle:0 10:16:16 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:16:16 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:431 calls_made:1 call_cycle:0 10:16:16 22 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:16:16 22 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:16:23 22 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:16:24 22 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:16:24 22 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:16:24 22 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:16:24 22 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:16:24 22 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:16:27 22 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0431lz 10:16:27 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0431lz.x00 10:16:27 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0431lz.x01 10:16:27 22 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0431lz.r in process_file_group 10:16:27 22 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260431.log 10:16:27 22 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:16:27 22 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0431dz 10:16:27 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0431dz.x00 10:16:27 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0431dz.x01 10:16:27 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0431dz.x02 10:16:27 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0431dz.x03 10:16:27 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0431dz.x04 10:16:27 22 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0431dz.r in process_file_group 10:16:28 22 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [431] 10:16:28 22 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [431] 10:16:28 22 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260431) for profiles 10:16:28 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 10:16:28 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (4/707) 704:707 to QC_BAD because CT out of water 10:16:28 22 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.053m) 10:16:28 22 Mar 2017 UTC: INFO: QC.py(365): Changed (2/707) 274 706 to QC_PROBABLY_BAD because raw temperature spikes 10:16:28 22 Mar 2017 UTC: INFO: QC.py(377): Changed (4/707) 704:707 to QC_BAD because raw salinity below bound 10:16:28 22 Mar 2017 UTC: INFO: QC.py(180): Changed (1/707) 274 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 10:16:28 22 Mar 2017 UTC: INFO: QC.py(365): Changed (2/707) 274 706 to QC_INTERPOLATED because temperature spikes 10:16:28 22 Mar 2017 UTC: INFO: QC.py(377): Changed (4/707) 704:707 to QC_BAD because salinity below bound 10:16:28 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/707) 273:277 to QC_BAD because slow apogee CT flow 10:16:28 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/707) 1:6 to QC_BAD because prior to dive start 10:16:28 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/707) 1:6 273:277 704:707 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:16:28 22 Mar 2017 UTC: INFO: QC.py(180): Changed (15/707) 1:6 273:277 704:707 to QC_BAD because changed corrected salin implies changed speed 10:16:29 22 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 10:16:29 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.95 cm/s 10:16:29 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.11 cm/s 10:16:29 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:16:29 22 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (206/707) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:16:29 22 Mar 2017 UTC: INFO: QC.py(180): Changed (1/707) 706 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 10:16:29 22 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (206/707) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 10:16:29 22 Mar 2017 UTC: INFO: QC.py(180): Changed (1/707) 706 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 10:16:29 22 Mar 2017 UTC: INFO: QC.py(180): Changed (15/707) 1:6 273:277 704:707 to QC_BAD because changed salinity implies changed optode oxygen 10:16:29 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:16:29 22 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:16:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 10:16:29 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 431: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.12% reduction 10:16:29 22 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.431 10:16:29 22 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:16:29 22 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:16:29 22 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:16:29 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 10:16:29 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 10:20:09 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 10:20:10 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 10:20:10 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 10:20:55 22 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:20:55 22 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:20:55 22 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 10:20:55 22 Mar 2017 UTC /home/sg626/p6260431.log /home/sg626/p6260431.eng /home/sg626/p6260431.asc /home/sg626/p6260431.pro /home/sg626/p6260431.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 10:20:55 22 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:20:55 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:20:55 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:20:55 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:20:55 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:20:55 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:20:55 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:20:55 22 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:20:55 22 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:20:55 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:20:55 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:20:55 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:20:55 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:20:55 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:20:55 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:20:55 22 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:20:55 22 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:20:55 22 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:20:55 22 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:20:55 22 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:20:55 22 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:20:55 22 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:20:55 22 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:20:55 22 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 10:20:55 22 Mar 2017 UTC 14:10:59 22 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 14340 14:10:59 22 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:14:15 22 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 14458 14:14:15 22 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:14:15 22 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 14:14:15 22 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 14:14:15 22 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:14:15 22 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170322041415 ] 14:14:15 22 Mar 2017 UTC: INFO: Base.py(1333): PID:14466 14:14:15 22 Mar 2017 UTC: INFO: Base.py(1375): Started processing 14:14:15 22 Mar 2017 UTC 14:14:15 22 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 14:14:17 22 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 14:14:17 22 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:14:17 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:14:17 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:432 calls_made:1 call_cycle:0 14:14:17 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:14:17 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:432 calls_made:1 call_cycle:0 14:14:17 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:14:17 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:432 calls_made:1 call_cycle:0 14:14:17 22 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:432 calls_made:1 call_cycle:0 2244.7600 -15801.5900 03/22/17 14:08:44 UTC) to sdrifter@soest.hawaii.edu 14:14:17 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:432 calls_made:1 call_cycle:0 14:14:17 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:14:17 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:432 calls_made:1 call_cycle:0 14:14:17 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:14:17 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:432 calls_made:1 call_cycle:0 14:14:17 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:14:17 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:432 calls_made:1 call_cycle:0 14:14:17 22 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:14:17 22 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:14:24 22 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:14:25 22 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:14:25 22 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 14:14:25 22 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:14:25 22 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:14:25 22 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 14:14:28 22 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0432lz 14:14:28 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0432lz.x00 14:14:28 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0432lz.x01 14:14:28 22 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0432lz.r in process_file_group 14:14:28 22 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260432.log 14:14:28 22 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 14:14:28 22 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0432dz 14:14:28 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0432dz.x00 14:14:28 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0432dz.x01 14:14:28 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0432dz.x02 14:14:28 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0432dz.x03 14:14:28 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0432dz.x04 14:14:28 22 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0432dz.r in process_file_group 14:14:28 22 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [432] 14:14:28 22 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [432] 14:14:28 22 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260432) for profiles 14:14:28 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 14:14:29 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/706) 703:705 to QC_BAD because CT out of water 14:14:29 22 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.013m) 14:14:29 22 Mar 2017 UTC: INFO: QC.py(365): Changed (3/706) 2 704 705 to QC_PROBABLY_BAD because raw temperature spikes 14:14:29 22 Mar 2017 UTC: INFO: QC.py(377): Changed (1/706) 705 to QC_BAD because raw salinity below bound 14:14:29 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/706) 706 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 14:14:29 22 Mar 2017 UTC: INFO: QC.py(180): Changed (2/706) 2 704 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:14:29 22 Mar 2017 UTC: INFO: QC.py(180): Changed (3/706) 703 704 706 to QC_BAD because changed raw cond implies changed raw salinity 14:14:29 22 Mar 2017 UTC: INFO: QC.py(365): Changed (3/706) 2 704 705 to QC_INTERPOLATED because temperature spikes 14:14:29 22 Mar 2017 UTC: INFO: QC.py(377): Changed (1/706) 705 to QC_BAD because salinity below bound 14:14:29 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/706) 706 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 14:14:29 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/706) 264:268 to QC_BAD because slow apogee CT flow 14:14:29 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/706) 1:7 to QC_BAD because prior to dive start 14:14:29 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/706) 701 702 to QC_BAD because end of climb 14:14:29 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (18/706) 1:7 264:268 701:706 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:14:29 22 Mar 2017 UTC: INFO: QC.py(180): Changed (18/706) 1:7 264:268 701:706 to QC_BAD because changed corrected salin implies changed speed 14:14:29 22 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:14:29 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.99 cm/s 14:14:29 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.14 cm/s 14:14:29 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:14:29 22 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (206/706) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:14:29 22 Mar 2017 UTC: INFO: QC.py(180): Changed (3/706) 2 704 705 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 14:14:29 22 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (206/706) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 14:14:29 22 Mar 2017 UTC: INFO: QC.py(180): Changed (3/706) 2 704 705 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 14:14:29 22 Mar 2017 UTC: INFO: QC.py(180): Changed (18/706) 1:7 264:268 701:706 to QC_BAD because changed salinity implies changed optode oxygen 14:14:29 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:14:29 22 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:14:29 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 14:14:30 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 432: Data set size for profile, binned and kkyy files reduced by 18 points, a 2.55% reduction 14:14:30 22 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.432 14:14:30 22 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:14:30 22 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:14:30 22 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:14:30 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 14:14:30 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 14:18:07 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 14:18:09 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 14:18:09 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 14:18:54 22 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:18:54 22 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:18:54 22 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:18:54 22 Mar 2017 UTC /home/sg626/p6260432.log /home/sg626/p6260432.eng /home/sg626/p6260432.asc /home/sg626/p6260432.pro /home/sg626/p6260432.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 14:18:54 22 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:18:54 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:18:54 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:18:54 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:18:54 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:18:54 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:18:54 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:18:54 22 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:18:54 22 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:18:54 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:18:54 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:18:54 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:18:54 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:18:54 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:18:54 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:18:54 22 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:18:54 22 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:18:54 22 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:18:54 22 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:18:54 22 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:18:54 22 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:18:54 22 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:18:54 22 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:18:54 22 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 14:18:54 22 Mar 2017 UTC 18:07:04 22 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 20407 18:07:04 22 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 18:10:09 22 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 20613 18:10:09 22 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:10:09 22 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 18:10:09 22 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 18:10:09 22 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:10:09 22 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170322081009 ] 18:10:09 22 Mar 2017 UTC: INFO: Base.py(1333): PID:20621 18:10:09 22 Mar 2017 UTC: INFO: Base.py(1375): Started processing 18:10:09 22 Mar 2017 UTC 18:10:09 22 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 18:10:11 22 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 18:10:11 22 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:10:11 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:10:11 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:433 calls_made:1 call_cycle:0 18:10:11 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:10:11 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:433 calls_made:1 call_cycle:0 18:10:11 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:10:11 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:433 calls_made:1 call_cycle:0 18:10:11 22 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:433 calls_made:1 call_cycle:0 2245.9350 -15801.6380 03/22/17 18:04:30 UTC) to sdrifter@soest.hawaii.edu 18:10:11 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:433 calls_made:1 call_cycle:0 18:10:11 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:10:11 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:433 calls_made:1 call_cycle:0 18:10:11 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:10:11 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:433 calls_made:1 call_cycle:0 18:10:11 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:10:11 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:433 calls_made:1 call_cycle:0 18:10:11 22 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:10:11 22 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:10:17 22 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:10:19 22 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:10:19 22 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 18:10:19 22 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:10:19 22 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:10:19 22 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 18:10:22 22 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0433lz 18:10:22 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0433lz.x00 18:10:22 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0433lz.x01 18:10:22 22 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0433lz.r in process_file_group 18:10:22 22 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260433.log 18:10:22 22 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 18:10:22 22 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0433dz 18:10:22 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0433dz.x00 18:10:22 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0433dz.x01 18:10:22 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0433dz.x02 18:10:22 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0433dz.x03 18:10:22 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0433dz.x04 18:10:22 22 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0433dz.r in process_file_group 18:10:22 22 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [433] 18:10:22 22 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [433] 18:10:22 22 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260433) for profiles 18:10:22 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 18:10:23 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/692) 690 691 to QC_BAD because CT out of water 18:10:23 22 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.056m) 18:10:23 22 Mar 2017 UTC: INFO: QC.py(365): Changed (3/692) 2 3 691 to QC_PROBABLY_BAD because raw temperature spikes 18:10:23 22 Mar 2017 UTC: INFO: QC.py(377): Changed (2/692) 689 691 to QC_BAD because raw salinity below bound 18:10:23 22 Mar 2017 UTC: INFO: QC.py(388): Changed (1/692) 689 to QC_BAD because bad raw salinity indicates raw conductivity issues 18:10:23 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/692) 692 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 18:10:23 22 Mar 2017 UTC: INFO: QC.py(180): Changed (2/692) 2 3 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 18:10:23 22 Mar 2017 UTC: INFO: QC.py(180): Changed (2/692) 690 692 to QC_BAD because changed raw cond implies changed raw salinity 18:10:23 22 Mar 2017 UTC: INFO: QC.py(365): Changed (3/692) 2 3 691 to QC_INTERPOLATED because temperature spikes 18:10:23 22 Mar 2017 UTC: INFO: QC.py(377): Changed (2/692) 689 691 to QC_BAD because salinity below bound 18:10:23 22 Mar 2017 UTC: INFO: QC.py(388): Changed (1/692) 689 to QC_BAD because bad salinity indicates conductivity issues 18:10:23 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/692) 692 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 18:10:23 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/692) 263:267 to QC_BAD because slow apogee CT flow 18:10:23 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/692) 1:6 to QC_BAD because prior to dive start 18:10:23 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/692) 1:6 263:267 689:692 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 18:10:23 22 Mar 2017 UTC: INFO: QC.py(180): Changed (15/692) 1:6 263:267 689:692 to QC_BAD because changed corrected salin implies changed speed 18:10:23 22 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 18:10:23 22 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 433 interp_salinity data_points in_between 368 397 % suspect thermal-inertia points 395 18:10:23 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.75 cm/s 18:10:23 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.13 cm/s 18:10:23 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 18:10:23 22 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (203/692) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 18:10:23 22 Mar 2017 UTC: INFO: QC.py(180): Changed (3/692) 2 3 691 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 18:10:23 22 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (203/692) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 18:10:23 22 Mar 2017 UTC: INFO: QC.py(180): Changed (3/692) 2 3 691 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 18:10:23 22 Mar 2017 UTC: INFO: QC.py(180): Changed (15/692) 1:6 263:267 689:692 to QC_BAD because changed salinity implies changed optode oxygen 18:10:23 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 18:10:23 22 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 18:10:23 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 18:10:24 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 433: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.17% reduction 18:10:24 22 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.433 18:10:24 22 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:10:24 22 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:10:24 22 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:10:24 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 18:10:24 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 18:14:02 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 18:14:04 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 18:14:04 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 18:14:49 22 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:14:49 22 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:14:49 22 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:14:49 22 Mar 2017 UTC /home/sg626/p6260433.log /home/sg626/p6260433.eng /home/sg626/p6260433.asc /home/sg626/p6260433.pro /home/sg626/p6260433.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 18:14:49 22 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:14:49 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:14:49 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:14:49 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:14:49 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:14:49 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:14:49 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:14:49 22 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:14:49 22 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:14:49 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:14:49 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:14:49 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:14:49 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:14:49 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:14:49 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:14:49 22 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:14:49 22 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 18:14:49 22 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 18:14:49 22 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 18:14:49 22 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 18:14:49 22 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:14:49 22 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:14:49 22 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:14:49 22 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 18:14:49 22 Mar 2017 UTC 22:05:59 22 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 26697 22:05:59 22 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:09:18 22 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 26828 22:09:18 22 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:09:18 22 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:09:18 22 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:09:18 22 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:09:18 22 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170322120917 ] 22:09:18 22 Mar 2017 UTC: INFO: Base.py(1333): PID:26835 22:09:18 22 Mar 2017 UTC: INFO: Base.py(1375): Started processing 22:09:18 22 Mar 2017 UTC 22:09:18 22 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:09:19 22 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:09:19 22 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:09:19 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:09:19 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:434 calls_made:1 call_cycle:0 22:09:19 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:09:19 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:434 calls_made:1 call_cycle:0 22:09:19 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:09:19 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:434 calls_made:1 call_cycle:0 22:09:19 22 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:434 calls_made:1 call_cycle:0 2246.9620 -15801.3590 03/22/17 22:03:37 UTC) to sdrifter@soest.hawaii.edu 22:09:19 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:434 calls_made:1 call_cycle:0 22:09:19 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:09:19 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:434 calls_made:1 call_cycle:0 22:09:19 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:09:19 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:434 calls_made:1 call_cycle:0 22:09:19 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:09:19 22 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:434 calls_made:1 call_cycle:0 22:09:19 22 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:09:19 22 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:09:26 22 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:09:27 22 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:09:27 22 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:09:27 22 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:09:27 22 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:09:27 22 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:09:30 22 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0434lz 22:09:30 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0434lz.x00 22:09:30 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0434lz.x01 22:09:30 22 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0434lz.r in process_file_group 22:09:30 22 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260434.log 22:09:30 22 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 22:09:30 22 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0434dz 22:09:30 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0434dz.x00 22:09:30 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0434dz.x01 22:09:30 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0434dz.x02 22:09:30 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0434dz.x03 22:09:30 22 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0434dz.x04 22:09:30 22 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0434dz.r in process_file_group 22:09:31 22 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [434] 22:09:31 22 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [434] 22:09:31 22 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260434) for profiles 22:09:31 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 22:09:31 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/699) 697:699 to QC_BAD because CT out of water 22:09:31 22 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.082m) 22:09:31 22 Mar 2017 UTC: INFO: QC.py(365): Changed (1/699) 698 to QC_PROBABLY_BAD because raw temperature spikes 22:09:31 22 Mar 2017 UTC: INFO: QC.py(377): Changed (2/699) 698 699 to QC_BAD because raw salinity below bound 22:09:31 22 Mar 2017 UTC: INFO: QC.py(180): Changed (1/699) 697 to QC_BAD because changed raw cond implies changed raw salinity 22:09:31 22 Mar 2017 UTC: INFO: QC.py(365): Changed (1/699) 698 to QC_INTERPOLATED because temperature spikes 22:09:31 22 Mar 2017 UTC: INFO: QC.py(377): Changed (2/699) 698 699 to QC_BAD because salinity below bound 22:09:31 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/699) 271:275 to QC_BAD because slow apogee CT flow 22:09:31 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/699) 1:6 to QC_BAD because prior to dive start 22:09:31 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/699) 1:6 271:275 697:699 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:09:31 22 Mar 2017 UTC: INFO: QC.py(180): Changed (14/699) 1:6 271:275 697:699 to QC_BAD because changed corrected salin implies changed speed 22:09:32 22 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:09:32 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.73 cm/s 22:09:32 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.04 cm/s 22:09:32 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:09:32 22 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (207/699) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:09:32 22 Mar 2017 UTC: INFO: QC.py(180): Changed (1/699) 698 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 22:09:32 22 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (207/699) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 22:09:32 22 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (4/699) 694 695 698 699 to QC_BAD because bad aa4330 oyxgen 22:09:32 22 Mar 2017 UTC: INFO: QC.py(180): Changed (12/699) 1:6 271:275 697 to QC_BAD because changed salinity implies changed optode oxygen 22:09:32 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:09:32 22 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 22:09:32 22 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 22:09:32 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 434: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.00% reduction 22:09:32 22 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.434 22:09:32 22 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:09:32 22 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:09:32 22 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:09:32 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 22:09:32 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 22:13:10 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 22:13:11 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 22:13:11 22 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 22:13:57 22 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:13:57 22 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:13:57 22 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:13:57 22 Mar 2017 UTC /home/sg626/p6260434.log /home/sg626/p6260434.eng /home/sg626/p6260434.asc /home/sg626/p6260434.pro /home/sg626/p6260434.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 22:13:57 22 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:13:57 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:13:57 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:13:57 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:13:57 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:13:57 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:13:57 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:13:57 22 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:13:57 22 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:13:57 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:13:57 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:13:57 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:13:57 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:13:57 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:13:57 22 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:13:57 22 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:13:57 22 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:13:57 22 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:13:57 22 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:13:57 22 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:13:57 22 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:13:57 22 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:13:57 22 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:13:57 22 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 22:13:57 22 Mar 2017 UTC 02:02:20 23 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 971 02:02:20 23 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:05:27 23 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 1103 02:05:27 23 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:05:27 23 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:05:27 23 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:05:27 23 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:05:27 23 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170322160526 ] 02:05:27 23 Mar 2017 UTC: INFO: Base.py(1333): PID:1110 02:05:27 23 Mar 2017 UTC: INFO: Base.py(1375): Started processing 02:05:27 23 Mar 2017 UTC 02:05:27 23 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:05:28 23 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:05:28 23 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:05:28 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:05:28 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:435 calls_made:1 call_cycle:0 02:05:28 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:05:28 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:435 calls_made:1 call_cycle:0 02:05:28 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:05:28 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:435 calls_made:1 call_cycle:0 02:05:28 23 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:435 calls_made:1 call_cycle:0 2247.9580 -15801.0670 03/23/17 02:00:00 UTC) to sdrifter@soest.hawaii.edu 02:05:29 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:435 calls_made:1 call_cycle:0 02:05:29 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:05:29 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:435 calls_made:1 call_cycle:0 02:05:29 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:05:29 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:435 calls_made:1 call_cycle:0 02:05:29 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:05:29 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:435 calls_made:1 call_cycle:0 02:05:29 23 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:05:29 23 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:05:35 23 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:05:37 23 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:05:37 23 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:05:37 23 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:05:37 23 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:05:37 23 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:05:40 23 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0435lz 02:05:40 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0435lz.x00 02:05:40 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0435lz.x01 02:05:40 23 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0435lz.r in process_file_group 02:05:40 23 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260435.log 02:05:40 23 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 02:05:40 23 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0435dz 02:05:40 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0435dz.x00 02:05:40 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0435dz.x01 02:05:40 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0435dz.x02 02:05:40 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0435dz.x03 02:05:40 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0435dz.x04 02:05:40 23 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0435dz.r in process_file_group 02:05:40 23 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [435] 02:05:40 23 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [435] 02:05:40 23 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260435) for profiles 02:05:40 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 02:05:41 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/718) 718 to QC_BAD because CT out of water 02:05:41 23 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.015m) 02:05:41 23 Mar 2017 UTC: INFO: QC.py(365): Changed (3/718) 2 273 306 to QC_PROBABLY_BAD because raw temperature spikes 02:05:41 23 Mar 2017 UTC: INFO: QC.py(408): Changed (1/718) 306 to QC_PROBABLY_BAD because raw conductivity spikes 02:05:41 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/718) 717 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 02:05:41 23 Mar 2017 UTC: INFO: QC.py(180): Changed (3/718) 2 273 306 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:05:41 23 Mar 2017 UTC: INFO: QC.py(180): Changed (2/718) 717 718 to QC_BAD because changed raw cond implies changed raw salinity 02:05:41 23 Mar 2017 UTC: INFO: QC.py(365): Changed (3/718) 2 273 306 to QC_INTERPOLATED because temperature spikes 02:05:41 23 Mar 2017 UTC: INFO: QC.py(408): Changed (1/718) 306 to QC_INTERPOLATED because conductivity spikes 02:05:41 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/718) 717 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 02:05:41 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/718) 272:276 to QC_BAD because slow apogee CT flow 02:05:41 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/718) 1:6 to QC_BAD because prior to dive start 02:05:41 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/718) 716 to QC_BAD because end of climb 02:05:41 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/718) 1:6 272:276 716:718 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:05:41 23 Mar 2017 UTC: INFO: QC.py(180): Changed (14/718) 1:6 272:276 716:718 to QC_BAD because changed corrected salin implies changed speed 02:05:41 23 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:05:41 23 Mar 2017 UTC: INFO: QC.py(180): Changed (1/718) 306 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 02:05:41 23 Mar 2017 UTC: INFO: QC.py(180): Changed (1/718) 306 to QC_INTERPOLATED because changed corrected temp implies changed speed 02:05:41 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.30 cm/s 02:05:41 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.15 cm/s 02:05:41 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:05:41 23 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (197/718) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:05:41 23 Mar 2017 UTC: INFO: QC.py(180): Changed (2/718) 2 306 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:05:41 23 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (197/718) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 02:05:41 23 Mar 2017 UTC: INFO: QC.py(180): Changed (2/718) 2 306 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:05:41 23 Mar 2017 UTC: INFO: QC.py(180): Changed (14/718) 1:6 272:276 716:718 to QC_BAD because changed salinity implies changed optode oxygen 02:05:41 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:05:41 23 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:05:41 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 02:05:42 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 435: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.95% reduction 02:05:42 23 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.435 02:05:42 23 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:05:42 23 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:05:42 23 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:05:42 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 02:05:42 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 02:09:19 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 02:09:20 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 02:09:20 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 02:10:06 23 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:10:06 23 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:10:06 23 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:10:06 23 Mar 2017 UTC /home/sg626/p6260435.log /home/sg626/p6260435.eng /home/sg626/p6260435.asc /home/sg626/p6260435.pro /home/sg626/p6260435.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 02:10:06 23 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:10:06 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:10:06 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:10:06 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:10:06 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:10:06 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:10:06 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:10:06 23 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:10:06 23 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:10:06 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:10:06 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:10:06 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:10:06 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:10:06 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:10:06 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:10:06 23 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:10:06 23 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:10:06 23 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:10:06 23 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:10:06 23 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:10:06 23 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:10:06 23 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:10:06 23 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:10:06 23 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 02:10:06 23 Mar 2017 UTC 06:04:22 23 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 7403 06:04:22 23 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:07:36 23 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 7532 06:07:36 23 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:07:36 23 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 06:07:36 23 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 06:07:36 23 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:07:36 23 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170322200736 ] 06:07:36 23 Mar 2017 UTC: INFO: Base.py(1333): PID:7539 06:07:36 23 Mar 2017 UTC: INFO: Base.py(1375): Started processing 06:07:36 23 Mar 2017 UTC 06:07:36 23 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 06:07:37 23 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 06:07:37 23 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:07:37 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:07:37 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:436 calls_made:1 call_cycle:0 06:07:37 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:07:37 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:436 calls_made:1 call_cycle:0 06:07:37 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:07:37 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:436 calls_made:1 call_cycle:0 06:07:37 23 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:436 calls_made:1 call_cycle:0 2249.1440 -15801.2430 03/23/17 06:02:00 UTC) to sdrifter@soest.hawaii.edu 06:07:38 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:436 calls_made:1 call_cycle:0 06:07:38 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:07:38 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:436 calls_made:1 call_cycle:0 06:07:38 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:07:38 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:436 calls_made:1 call_cycle:0 06:07:38 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:07:38 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:436 calls_made:1 call_cycle:0 06:07:38 23 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:07:38 23 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:07:44 23 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:07:45 23 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:07:45 23 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 06:07:45 23 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:07:46 23 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:07:46 23 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 06:07:49 23 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0436lz 06:07:49 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0436lz.x00 06:07:49 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0436lz.x01 06:07:49 23 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0436lz.r in process_file_group 06:07:49 23 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260436.log 06:07:49 23 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 06:07:49 23 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0436dz 06:07:49 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0436dz.x00 06:07:49 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0436dz.x01 06:07:49 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0436dz.x02 06:07:49 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0436dz.x03 06:07:49 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0436dz.x04 06:07:49 23 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0436dz.r in process_file_group 06:07:49 23 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [436] 06:07:49 23 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [436] 06:07:49 23 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260436) for profiles 06:07:49 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 06:07:49 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/717) 716 to QC_BAD because CT out of water 06:07:49 23 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.009m) 06:07:49 23 Mar 2017 UTC: INFO: QC.py(365): Changed (4/717) 252 254 476 715 to QC_PROBABLY_BAD because raw temperature spikes 06:07:49 23 Mar 2017 UTC: INFO: QC.py(377): Changed (1/717) 715 to QC_BAD because raw salinity below bound 06:07:49 23 Mar 2017 UTC: INFO: QC.py(408): Changed (4/717) 252 254 476 715 to QC_PROBABLY_BAD because raw conductivity spikes 06:07:49 23 Mar 2017 UTC: INFO: QC.py(180): Changed (3/717) 252 254 476 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 06:07:49 23 Mar 2017 UTC: INFO: QC.py(180): Changed (1/717) 716 to QC_BAD because changed raw cond implies changed raw salinity 06:07:49 23 Mar 2017 UTC: INFO: QC.py(365): Changed (4/717) 252 254 476 715 to QC_INTERPOLATED because temperature spikes 06:07:49 23 Mar 2017 UTC: INFO: QC.py(377): Changed (1/717) 715 to QC_BAD because salinity below bound 06:07:49 23 Mar 2017 UTC: INFO: QC.py(388): Changed (1/717) 715 to QC_BAD because bad salinity indicates conductivity issues 06:07:49 23 Mar 2017 UTC: INFO: QC.py(408): Changed (3/717) 252 254 476 to QC_INTERPOLATED because conductivity spikes 06:07:49 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/717) 272:276 to QC_BAD because slow apogee CT flow 06:07:49 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/717) 1:6 to QC_BAD because prior to dive start 06:07:49 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/717) 717 to QC_BAD because end of climb 06:07:49 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/717) 1:6 272:276 715:717 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 06:07:50 23 Mar 2017 UTC: INFO: QC.py(180): Changed (14/717) 1:6 272:276 715:717 to QC_BAD because changed corrected salin implies changed speed 06:07:50 23 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 06:07:50 23 Mar 2017 UTC: INFO: QC.py(180): Changed (3/717) 252 254 476 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 06:07:50 23 Mar 2017 UTC: INFO: QC.py(180): Changed (3/717) 252 254 476 to QC_INTERPOLATED because changed corrected temp implies changed speed 06:07:50 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.63 cm/s 06:07:50 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.14 cm/s 06:07:50 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 06:07:50 23 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (205/717) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 06:07:50 23 Mar 2017 UTC: INFO: QC.py(180): Changed (2/717) 476 715 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 06:07:50 23 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (205/717) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 06:07:50 23 Mar 2017 UTC: INFO: QC.py(180): Changed (2/717) 476 715 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 06:07:50 23 Mar 2017 UTC: INFO: QC.py(180): Changed (14/717) 1:6 272:276 715:717 to QC_BAD because changed salinity implies changed optode oxygen 06:07:50 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 06:07:50 23 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 06:07:50 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 06:07:51 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 436: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.95% reduction 06:07:51 23 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.436 06:07:51 23 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:07:51 23 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:07:51 23 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:07:51 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 06:07:51 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 06:11:30 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 06:11:31 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 06:11:31 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 06:12:17 23 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:12:17 23 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:12:17 23 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 06:12:17 23 Mar 2017 UTC /home/sg626/p6260436.log /home/sg626/p6260436.eng /home/sg626/p6260436.asc /home/sg626/p6260436.pro /home/sg626/p6260436.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 06:12:17 23 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:12:17 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:12:17 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:12:17 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:12:17 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:12:17 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:12:17 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:12:17 23 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:12:17 23 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:12:17 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:12:17 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:12:17 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:12:17 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:12:17 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:12:17 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:12:17 23 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:12:17 23 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 06:12:17 23 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 06:12:17 23 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 06:12:17 23 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 06:12:17 23 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:12:17 23 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:12:17 23 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:12:17 23 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 06:12:17 23 Mar 2017 UTC 09:49:55 23 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 13224 09:49:55 23 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:53:00 23 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 13431 09:53:00 23 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:53:00 23 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:53:00 23 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:53:00 23 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:53:00 23 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170322235300 ] 09:53:00 23 Mar 2017 UTC: INFO: Base.py(1333): PID:13439 09:53:00 23 Mar 2017 UTC: INFO: Base.py(1375): Started processing 09:53:00 23 Mar 2017 UTC 09:53:00 23 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:53:02 23 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:53:02 23 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:53:02 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:53:02 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:437 calls_made:1 call_cycle:0 09:53:02 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:53:02 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:437 calls_made:1 call_cycle:0 09:53:02 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:53:02 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:437 calls_made:1 call_cycle:0 09:53:02 23 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:437 calls_made:1 call_cycle:0 2250.3350 -15801.2140 03/23/17 09:47:37 UTC) to sdrifter@soest.hawaii.edu 09:53:02 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:437 calls_made:1 call_cycle:0 09:53:02 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:53:02 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:437 calls_made:1 call_cycle:0 09:53:02 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:53:02 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:437 calls_made:1 call_cycle:0 09:53:02 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:53:02 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:437 calls_made:1 call_cycle:0 09:53:02 23 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:53:02 23 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:53:09 23 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:53:10 23 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:53:10 23 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:53:10 23 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:53:10 23 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:53:10 23 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:53:13 23 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0437lz 09:53:13 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0437lz.x00 09:53:13 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0437lz.x01 09:53:13 23 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0437lz.r in process_file_group 09:53:13 23 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260437.log 09:53:13 23 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:53:13 23 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0437dz 09:53:13 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0437dz.x00 09:53:13 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0437dz.x01 09:53:13 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0437dz.x02 09:53:13 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0437dz.x03 09:53:13 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0437dz.x04 09:53:13 23 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0437dz.r in process_file_group 09:53:14 23 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [437] 09:53:14 23 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [437] 09:53:14 23 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260437) for profiles 09:53:14 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 09:53:14 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/677) 676 677 to QC_BAD because CT out of water 09:53:14 23 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.068m) 09:53:14 23 Mar 2017 UTC: INFO: QC.py(365): Changed (6/677) 4 5 215 216 255 269 to QC_PROBABLY_BAD because raw temperature spikes 09:53:14 23 Mar 2017 UTC: INFO: QC.py(377): Changed (1/677) 676 to QC_BAD because raw salinity below bound 09:53:14 23 Mar 2017 UTC: INFO: QC.py(408): Changed (3/677) 215 269 452 to QC_PROBABLY_BAD because raw conductivity spikes 09:53:14 23 Mar 2017 UTC: INFO: QC.py(180): Changed (6/677) 4 5 215 216 255 269 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 09:53:14 23 Mar 2017 UTC: INFO: QC.py(180): Changed (1/677) 452 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 09:53:14 23 Mar 2017 UTC: INFO: QC.py(180): Changed (1/677) 677 to QC_BAD because changed raw cond implies changed raw salinity 09:53:14 23 Mar 2017 UTC: INFO: QC.py(365): Changed (6/677) 4 5 215 216 255 269 to QC_INTERPOLATED because temperature spikes 09:53:14 23 Mar 2017 UTC: INFO: QC.py(377): Changed (1/677) 676 to QC_BAD because salinity below bound 09:53:14 23 Mar 2017 UTC: INFO: QC.py(408): Changed (3/677) 215 269 452 to QC_INTERPOLATED because conductivity spikes 09:53:14 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/677) 253:257 to QC_BAD because slow apogee CT flow 09:53:14 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/677) 1:6 to QC_BAD because prior to dive start 09:53:14 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/677) 1:6 253:257 676 677 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:53:14 23 Mar 2017 UTC: INFO: QC.py(180): Changed (13/677) 1:6 253:257 676 677 to QC_BAD because changed corrected salin implies changed speed 09:53:14 23 Mar 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 675 09:53:15 23 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:53:15 23 Mar 2017 UTC: INFO: QC.py(180): Changed (3/677) 215 216 269 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 09:53:15 23 Mar 2017 UTC: INFO: QC.py(180): Changed (1/677) 452 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 09:53:15 23 Mar 2017 UTC: INFO: QC.py(180): Changed (3/677) 215 216 269 to QC_INTERPOLATED because changed corrected temp implies changed speed 09:53:15 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.17 cm/s 09:53:15 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.30 cm/s 09:53:15 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:53:15 23 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (192/677) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:53:15 23 Mar 2017 UTC: INFO: QC.py(180): Changed (3/677) 4 5 216 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:53:15 23 Mar 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/677) 675 to QC_BAD because slow flow in SBE43 09:53:15 23 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (192/677) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 09:53:15 23 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/677) 36 to QC_BAD because bad aa4330 oyxgen 09:53:15 23 Mar 2017 UTC: INFO: QC.py(180): Changed (3/677) 4 5 216 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:53:15 23 Mar 2017 UTC: INFO: QC.py(180): Changed (13/677) 1:6 253:257 676 677 to QC_BAD because changed salinity implies changed optode oxygen 09:53:15 23 Mar 2017 UTC: INFO: QC.py(180): Changed (1/677) 452 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 09:53:15 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:53:15 23 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:53:15 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 09:53:15 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 437: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.92% reduction 09:53:15 23 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.437 09:53:15 23 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:53:15 23 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:53:15 23 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:53:15 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 09:53:15 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 09:56:55 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 09:56:56 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 09:56:56 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 09:57:42 23 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:57:42 23 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:57:42 23 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:57:42 23 Mar 2017 UTC /home/sg626/p6260437.log /home/sg626/p6260437.eng /home/sg626/p6260437.asc /home/sg626/p6260437.pro /home/sg626/p6260437.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 09:57:42 23 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:57:42 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:57:42 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:57:42 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:57:42 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:57:42 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:57:42 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:57:42 23 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:57:42 23 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:57:42 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:57:42 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:57:42 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:57:42 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:57:42 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:57:42 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:57:42 23 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:57:42 23 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:57:42 23 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:57:42 23 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:57:42 23 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:57:42 23 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:57:42 23 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:57:42 23 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:57:42 23 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 09:57:42 23 Mar 2017 UTC 13:36:24 23 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 19438 13:36:24 23 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:39:50 23 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 19568 13:39:50 23 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:39:50 23 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:39:50 23 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:39:50 23 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:39:50 23 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170323033949 ] 13:39:50 23 Mar 2017 UTC: INFO: Base.py(1333): PID:19576 13:39:50 23 Mar 2017 UTC: INFO: Base.py(1375): Started processing 13:39:50 23 Mar 2017 UTC 13:39:50 23 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:39:51 23 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:39:51 23 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:39:51 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:39:51 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:438 calls_made:1 call_cycle:0 13:39:51 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:39:51 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:438 calls_made:1 call_cycle:0 13:39:51 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:39:51 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:438 calls_made:1 call_cycle:0 13:39:51 23 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:438 calls_made:1 call_cycle:0 2251.0890 -15801.5930 03/23/17 13:34:00 UTC) to sdrifter@soest.hawaii.edu 13:39:51 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:438 calls_made:1 call_cycle:0 13:39:51 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:39:51 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:438 calls_made:1 call_cycle:0 13:39:51 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:39:51 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:438 calls_made:1 call_cycle:0 13:39:51 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:39:51 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:438 calls_made:1 call_cycle:0 13:39:51 23 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:39:51 23 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:39:58 23 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:39:59 23 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:39:59 23 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:39:59 23 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:39:59 23 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:39:59 23 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:40:02 23 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0438lz 13:40:02 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0438lz.x00 13:40:02 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0438lz.x01 13:40:02 23 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0438lz.r in process_file_group 13:40:02 23 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260438.log 13:40:02 23 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:40:02 23 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0438dz 13:40:02 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0438dz.x00 13:40:02 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0438dz.x01 13:40:02 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0438dz.x02 13:40:02 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0438dz.x03 13:40:02 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0438dz.x04 13:40:02 23 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0438dz.r in process_file_group 13:40:03 23 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [438] 13:40:03 23 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [438] 13:40:03 23 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260438) for profiles 13:40:03 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:40:03 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/673) 671:673 to QC_BAD because CT out of water 13:40:03 23 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.033m) 13:40:03 23 Mar 2017 UTC: INFO: QC.py(365): Changed (7/673) 2 232 233 239 267 269 672 to QC_PROBABLY_BAD because raw temperature spikes 13:40:03 23 Mar 2017 UTC: INFO: QC.py(377): Changed (1/673) 673 to QC_BAD because raw salinity below bound 13:40:03 23 Mar 2017 UTC: INFO: QC.py(408): Changed (5/673) 232 233 239 267 269 to QC_PROBABLY_BAD because raw conductivity spikes 13:40:03 23 Mar 2017 UTC: INFO: QC.py(180): Changed (7/673) 2 232 233 239 267 269 672 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:40:03 23 Mar 2017 UTC: INFO: QC.py(180): Changed (2/673) 671 672 to QC_BAD because changed raw cond implies changed raw salinity 13:40:03 23 Mar 2017 UTC: INFO: QC.py(365): Changed (7/673) 2 232 233 239 267 269 672 to QC_INTERPOLATED because temperature spikes 13:40:03 23 Mar 2017 UTC: INFO: QC.py(377): Changed (1/673) 673 to QC_BAD because salinity below bound 13:40:03 23 Mar 2017 UTC: INFO: QC.py(408): Changed (5/673) 232 233 239 267 269 to QC_INTERPOLATED because conductivity spikes 13:40:03 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/673) 250:254 to QC_BAD because slow apogee CT flow 13:40:03 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/673) 1:6 to QC_BAD because prior to dive start 13:40:03 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/673) 1:6 250:254 671:673 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:40:03 23 Mar 2017 UTC: INFO: QC.py(180): Changed (14/673) 1:6 250:254 671:673 to QC_BAD because changed corrected salin implies changed speed 13:40:04 23 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:40:04 23 Mar 2017 UTC: INFO: QC.py(180): Changed (5/673) 232 233 239 267 269 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 13:40:04 23 Mar 2017 UTC: INFO: QC.py(180): Changed (5/673) 232 233 239 267 269 to QC_INTERPOLATED because changed corrected temp implies changed speed 13:40:04 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.05 cm/s 13:40:04 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.31 cm/s 13:40:04 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:40:04 23 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (192/673) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:40:04 23 Mar 2017 UTC: INFO: QC.py(180): Changed (2/673) 2 672 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:40:04 23 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (192/673) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:40:04 23 Mar 2017 UTC: INFO: QC.py(180): Changed (2/673) 2 672 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:40:04 23 Mar 2017 UTC: INFO: QC.py(180): Changed (14/673) 1:6 250:254 671:673 to QC_BAD because changed salinity implies changed optode oxygen 13:40:04 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:40:04 23 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:40:04 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:40:04 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 438: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.08% reduction 13:40:04 23 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.438 13:40:04 23 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:40:04 23 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:40:04 23 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:40:05 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:40:05 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:43:44 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 13:43:45 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:43:45 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:44:31 23 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:44:31 23 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:44:31 23 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:44:31 23 Mar 2017 UTC /home/sg626/p6260438.log /home/sg626/p6260438.eng /home/sg626/p6260438.asc /home/sg626/p6260438.pro /home/sg626/p6260438.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:44:31 23 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:44:31 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:44:31 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:44:31 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:44:31 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:44:31 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:44:31 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:44:31 23 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:44:31 23 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:44:31 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:44:31 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:44:31 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:44:31 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:44:31 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:44:31 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:44:31 23 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:44:31 23 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:44:31 23 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:44:31 23 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:44:31 23 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:44:31 23 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:44:31 23 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:44:31 23 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:44:31 23 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 13:44:31 23 Mar 2017 UTC 17:30:49 23 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 25765 17:30:49 23 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:33:52 23 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 25892 17:33:52 23 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:33:52 23 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:33:52 23 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:33:52 23 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:33:52 23 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170323073352 ] 17:33:52 23 Mar 2017 UTC: INFO: Base.py(1333): PID:25899 17:33:52 23 Mar 2017 UTC: INFO: Base.py(1375): Started processing 17:33:52 23 Mar 2017 UTC 17:33:52 23 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:33:53 23 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:33:53 23 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:33:53 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:33:53 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:439 calls_made:1 call_cycle:0 17:33:53 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:33:53 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:439 calls_made:1 call_cycle:0 17:33:53 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:33:53 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:439 calls_made:1 call_cycle:0 17:33:53 23 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:439 calls_made:1 call_cycle:0 2249.6460 -15801.1220 03/23/17 17:28:30 UTC) to sdrifter@soest.hawaii.edu 17:33:54 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:439 calls_made:1 call_cycle:0 17:33:54 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:33:54 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:439 calls_made:1 call_cycle:0 17:33:54 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:33:54 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:439 calls_made:1 call_cycle:0 17:33:54 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:33:54 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:439 calls_made:1 call_cycle:0 17:33:54 23 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:33:54 23 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:34:01 23 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:34:02 23 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:34:02 23 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:34:02 23 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:34:02 23 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:34:02 23 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:34:05 23 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0439lz 17:34:05 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0439lz.x00 17:34:05 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0439lz.x01 17:34:05 23 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0439lz.r in process_file_group 17:34:05 23 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260439.log 17:34:05 23 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:34:05 23 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0439dz 17:34:05 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0439dz.x00 17:34:05 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0439dz.x01 17:34:05 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0439dz.x02 17:34:05 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0439dz.x03 17:34:05 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0439dz.x04 17:34:05 23 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0439dz.r in process_file_group 17:34:06 23 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [439] 17:34:06 23 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [439] 17:34:06 23 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260439) for profiles 17:34:06 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:34:06 23 Mar 2017 UTC: INFO: QC.py(365): Changed (9/690) 2 5 218 219 244 245 248 291 293 to QC_PROBABLY_BAD because raw temperature spikes 17:34:06 23 Mar 2017 UTC: INFO: QC.py(408): Changed (4/690) 218 219 248 293 to QC_PROBABLY_BAD because raw conductivity spikes 17:34:06 23 Mar 2017 UTC: INFO: QC.py(180): Changed (9/690) 2 5 218 219 244 245 248 291 293 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:34:06 23 Mar 2017 UTC: INFO: QC.py(365): Changed (9/690) 2 5 218 219 244 245 248 291 293 to QC_INTERPOLATED because temperature spikes 17:34:06 23 Mar 2017 UTC: INFO: QC.py(408): Changed (4/690) 218 219 248 293 to QC_INTERPOLATED because conductivity spikes 17:34:06 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/690) 271:275 to QC_BAD because slow apogee CT flow 17:34:06 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/690) 1:6 to QC_BAD because prior to dive start 17:34:06 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/690) 1:6 271:275 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:34:06 23 Mar 2017 UTC: INFO: QC.py(180): Changed (11/690) 1:6 271:275 to QC_BAD because changed corrected salin implies changed speed 17:34:07 23 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:34:07 23 Mar 2017 UTC: INFO: QC.py(180): Changed (7/690) 218 219 244 245 248 291 293 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 17:34:07 23 Mar 2017 UTC: INFO: QC.py(180): Changed (7/690) 218 219 244 245 248 291 293 to QC_INTERPOLATED because changed corrected temp implies changed speed 17:34:07 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.90 cm/s 17:34:07 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.01 cm/s 17:34:07 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:34:07 23 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (203/690) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:34:07 23 Mar 2017 UTC: INFO: QC.py(180): Changed (3/690) 2 5 291 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:34:07 23 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (203/690) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:34:07 23 Mar 2017 UTC: INFO: QC.py(180): Changed (3/690) 2 5 291 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:34:07 23 Mar 2017 UTC: INFO: QC.py(180): Changed (11/690) 1:6 271:275 to QC_BAD because changed salinity implies changed optode oxygen 17:34:07 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:34:07 23 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:34:07 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:34:07 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 439: Data set size for profile, binned and kkyy files reduced by 11 points, a 1.59% reduction 17:34:07 23 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.439 17:34:07 23 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:34:07 23 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:34:07 23 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:34:07 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:34:07 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:37:47 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 17:37:48 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:37:48 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:38:35 23 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:38:35 23 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:38:35 23 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:38:35 23 Mar 2017 UTC /home/sg626/p6260439.log /home/sg626/p6260439.eng /home/sg626/p6260439.asc /home/sg626/p6260439.pro /home/sg626/p6260439.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:38:35 23 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:38:35 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:38:35 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:38:35 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:38:35 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:38:35 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:38:35 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:38:35 23 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:38:35 23 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:38:35 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:38:35 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:38:35 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:38:35 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:38:35 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:38:35 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:38:35 23 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:38:35 23 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:38:35 23 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:38:35 23 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:38:35 23 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:38:35 23 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:38:35 23 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:38:35 23 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:38:35 23 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 17:38:35 23 Mar 2017 UTC 21:37:16 23 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 32085 21:37:16 23 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:40:31 23 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 32295 21:40:31 23 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:40:31 23 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:40:31 23 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:40:31 23 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:40:31 23 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170323114030 ] 21:40:31 23 Mar 2017 UTC: INFO: Base.py(1333): PID:32303 21:40:31 23 Mar 2017 UTC: INFO: Base.py(1375): Started processing 21:40:31 23 Mar 2017 UTC 21:40:31 23 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:40:32 23 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:40:32 23 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:40:32 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:40:32 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:440 calls_made:1 call_cycle:0 21:40:32 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:40:32 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:440 calls_made:1 call_cycle:0 21:40:32 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:40:32 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:440 calls_made:1 call_cycle:0 21:40:32 23 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:440 calls_made:1 call_cycle:0 2247.6980 -15800.4210 03/23/17 21:34:54 UTC) to sdrifter@soest.hawaii.edu 21:40:33 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:440 calls_made:1 call_cycle:0 21:40:33 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:40:33 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:440 calls_made:1 call_cycle:0 21:40:33 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:40:33 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:440 calls_made:1 call_cycle:0 21:40:33 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:40:33 23 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:440 calls_made:1 call_cycle:0 21:40:33 23 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:40:33 23 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:40:39 23 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:40:41 23 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:40:41 23 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:40:41 23 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:40:41 23 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:40:41 23 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:40:44 23 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0440lz 21:40:44 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0440lz.x00 21:40:44 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0440lz.x01 21:40:44 23 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0440lz.r in process_file_group 21:40:44 23 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260440.log 21:40:44 23 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:40:44 23 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0440dz 21:40:44 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0440dz.x00 21:40:44 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0440dz.x01 21:40:44 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0440dz.x02 21:40:44 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0440dz.x03 21:40:44 23 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0440dz.x04 21:40:44 23 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0440dz.r in process_file_group 21:40:44 23 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [440] 21:40:44 23 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [440] 21:40:44 23 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260440) for profiles 21:40:44 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:40:45 23 Mar 2017 UTC: INFO: QC.py(365): Changed (5/734) 2 3 268 275 276 to QC_PROBABLY_BAD because raw temperature spikes 21:40:45 23 Mar 2017 UTC: INFO: QC.py(408): Changed (3/734) 252 268 733 to QC_PROBABLY_BAD because raw conductivity spikes 21:40:45 23 Mar 2017 UTC: INFO: QC.py(180): Changed (5/734) 2 3 268 275 276 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:40:45 23 Mar 2017 UTC: INFO: QC.py(180): Changed (2/734) 252 733 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 21:40:45 23 Mar 2017 UTC: INFO: QC.py(365): Changed (5/734) 2 3 268 275 276 to QC_INTERPOLATED because temperature spikes 21:40:45 23 Mar 2017 UTC: INFO: QC.py(408): Changed (3/734) 252 268 733 to QC_INTERPOLATED because conductivity spikes 21:40:45 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/734) 271:275 to QC_BAD because slow apogee CT flow 21:40:45 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/734) 1:6 to QC_BAD because prior to dive start 21:40:45 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (3/734) 732:734 to QC_BAD because end of climb 21:40:45 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/734) 1:6 271:275 732:734 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:40:45 23 Mar 2017 UTC: INFO: QC.py(180): Changed (14/734) 1:6 271:275 732:734 to QC_BAD because changed corrected salin implies changed speed 21:40:45 23 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:40:45 23 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 440 interp_salinity data_points in_between 135 167 % suspect thermal-inertia points 140 21:40:45 23 Mar 2017 UTC: INFO: QC.py(180): Changed (2/734) 268 276 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 21:40:45 23 Mar 2017 UTC: INFO: QC.py(180): Changed (1/734) 252 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 21:40:45 23 Mar 2017 UTC: INFO: QC.py(180): Changed (2/734) 268 276 to QC_INTERPOLATED because changed corrected temp implies changed speed 21:40:45 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.29 cm/s 21:40:45 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.29 cm/s 21:40:45 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:40:45 23 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (212/734) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:40:45 23 Mar 2017 UTC: INFO: QC.py(180): Changed (3/734) 2 3 276 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:40:45 23 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (212/734) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:40:45 23 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/734) 730 734 to QC_BAD because bad aa4330 oyxgen 21:40:45 23 Mar 2017 UTC: INFO: QC.py(180): Changed (3/734) 2 3 276 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:40:45 23 Mar 2017 UTC: INFO: QC.py(180): Changed (13/734) 1:6 271:275 732 733 to QC_BAD because changed salinity implies changed optode oxygen 21:40:45 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:40:45 23 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:40:45 23 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:40:46 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 440: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.91% reduction 21:40:46 23 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.440 21:40:46 23 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:40:46 23 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:40:46 23 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:40:46 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:40:46 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 21:44:25 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 21:44:26 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 21:44:26 23 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 21:45:13 23 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:45:13 23 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:45:13 23 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:45:13 23 Mar 2017 UTC /home/sg626/p6260440.log /home/sg626/p6260440.eng /home/sg626/p6260440.asc /home/sg626/p6260440.pro /home/sg626/p6260440.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 21:45:13 23 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:45:13 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:45:13 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:45:13 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:45:13 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:45:13 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:45:13 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:45:13 23 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:45:13 23 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:45:13 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:45:13 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:45:13 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:45:13 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:45:13 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:45:13 23 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:45:13 23 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:45:13 23 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:45:13 23 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:45:13 23 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:45:13 23 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:45:13 23 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:45:13 23 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:45:13 23 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:45:13 23 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 21:45:13 23 Mar 2017 UTC 01:38:13 24 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 6225 01:38:13 24 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:41:30 24 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 6430 01:41:30 24 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:41:30 24 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:41:30 24 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:41:30 24 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:41:30 24 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170323154129 ] 01:41:30 24 Mar 2017 UTC: INFO: Base.py(1333): PID:6438 01:41:30 24 Mar 2017 UTC: INFO: Base.py(1375): Started processing 01:41:30 24 Mar 2017 UTC 01:41:30 24 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:41:31 24 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:41:31 24 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:41:31 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:41:31 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:441 calls_made:1 call_cycle:0 01:41:31 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:41:31 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:441 calls_made:1 call_cycle:0 01:41:31 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:41:31 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:441 calls_made:1 call_cycle:0 01:41:31 24 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:441 calls_made:1 call_cycle:0 2246.0030 -15759.9010 03/24/17 01:35:55 UTC) to sdrifter@soest.hawaii.edu 01:41:31 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:441 calls_made:1 call_cycle:0 01:41:31 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:41:31 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:441 calls_made:1 call_cycle:0 01:41:31 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:41:31 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:441 calls_made:1 call_cycle:0 01:41:31 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:41:31 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:441 calls_made:1 call_cycle:0 01:41:31 24 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:41:31 24 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:41:38 24 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:41:39 24 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:41:39 24 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:41:39 24 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:41:39 24 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:41:39 24 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:41:42 24 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0441lz 01:41:42 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0441lz.x00 01:41:42 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0441lz.x01 01:41:42 24 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0441lz.r in process_file_group 01:41:42 24 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260441.log 01:41:42 24 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:41:42 24 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0441dz 01:41:42 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0441dz.x00 01:41:42 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0441dz.x01 01:41:42 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0441dz.x02 01:41:42 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0441dz.x03 01:41:42 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0441dz.x04 01:41:42 24 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0441dz.r in process_file_group 01:41:43 24 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [441] 01:41:43 24 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [441] 01:41:43 24 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260441) for profiles 01:41:43 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:41:43 24 Mar 2017 UTC: INFO: QC.py(365): Changed (5/725) 2 227 274 310 723 to QC_PROBABLY_BAD because raw temperature spikes 01:41:43 24 Mar 2017 UTC: INFO: QC.py(408): Changed (2/725) 225 310 to QC_PROBABLY_BAD because raw conductivity spikes 01:41:43 24 Mar 2017 UTC: INFO: QC.py(180): Changed (5/725) 2 227 274 310 723 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:41:43 24 Mar 2017 UTC: INFO: QC.py(180): Changed (1/725) 225 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 01:41:43 24 Mar 2017 UTC: INFO: QC.py(365): Changed (5/725) 2 227 274 310 723 to QC_INTERPOLATED because temperature spikes 01:41:43 24 Mar 2017 UTC: INFO: QC.py(408): Changed (2/725) 225 310 to QC_INTERPOLATED because conductivity spikes 01:41:43 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/725) 272:276 to QC_BAD because slow apogee CT flow 01:41:43 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/725) 1:6 to QC_BAD because prior to dive start 01:41:43 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/725) 724 725 to QC_BAD because end of climb 01:41:43 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/725) 1:6 272:276 724 725 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:41:43 24 Mar 2017 UTC: INFO: QC.py(180): Changed (13/725) 1:6 272:276 724 725 to QC_BAD because changed corrected salin implies changed speed 01:41:44 24 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:41:44 24 Mar 2017 UTC: INFO: QC.py(180): Changed (3/725) 227 310 723 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 01:41:44 24 Mar 2017 UTC: INFO: QC.py(180): Changed (1/725) 225 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 01:41:44 24 Mar 2017 UTC: INFO: QC.py(180): Changed (3/725) 227 310 723 to QC_INTERPOLATED because changed corrected temp implies changed speed 01:41:44 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.58 cm/s 01:41:44 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.98 cm/s 01:41:44 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:41:44 24 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (206/725) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:41:44 24 Mar 2017 UTC: INFO: QC.py(180): Changed (2/725) 2 723 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 01:41:44 24 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (206/725) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 01:41:44 24 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/725) 718 719 to QC_BAD because bad aa4330 oyxgen 01:41:44 24 Mar 2017 UTC: INFO: QC.py(180): Changed (2/725) 2 723 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 01:41:44 24 Mar 2017 UTC: INFO: QC.py(180): Changed (13/725) 1:6 272:276 724 725 to QC_BAD because changed salinity implies changed optode oxygen 01:41:44 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:41:44 24 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:41:44 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:41:44 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 441: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.79% reduction 01:41:44 24 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.441 01:41:44 24 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:41:44 24 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:41:44 24 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:41:45 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:41:45 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 01:45:29 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 01:45:31 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 01:45:31 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 01:46:17 24 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:46:17 24 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:46:17 24 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:46:17 24 Mar 2017 UTC /home/sg626/p6260441.log /home/sg626/p6260441.eng /home/sg626/p6260441.asc /home/sg626/p6260441.pro /home/sg626/p6260441.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 01:46:17 24 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:46:17 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:46:17 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:46:17 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:46:17 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:46:17 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:46:17 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:46:17 24 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:46:17 24 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:46:17 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:46:17 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:46:17 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:46:17 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:46:17 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:46:17 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:46:17 24 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:46:17 24 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:46:17 24 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:46:17 24 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:46:17 24 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:46:17 24 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:46:17 24 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:46:17 24 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:46:17 24 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 01:46:17 24 Mar 2017 UTC 05:31:07 24 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 12536 05:31:07 24 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:34:05 24 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 12666 05:34:05 24 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:34:05 24 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:34:05 24 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:34:05 24 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:34:05 24 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170323193405 ] 05:34:05 24 Mar 2017 UTC: INFO: Base.py(1333): PID:12673 05:34:06 24 Mar 2017 UTC: INFO: Base.py(1375): Started processing 05:34:06 24 Mar 2017 UTC 05:34:06 24 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:34:07 24 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:34:07 24 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:34:07 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:34:07 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:442 calls_made:1 call_cycle:0 05:34:07 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:34:07 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:442 calls_made:1 call_cycle:0 05:34:07 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:34:07 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:442 calls_made:1 call_cycle:0 05:34:07 24 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:442 calls_made:1 call_cycle:0 2244.3520 -15800.0210 03/24/17 05:28:40 UTC) to sdrifter@soest.hawaii.edu 05:34:07 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:442 calls_made:1 call_cycle:0 05:34:07 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:34:07 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:442 calls_made:1 call_cycle:0 05:34:07 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:34:07 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:442 calls_made:1 call_cycle:0 05:34:07 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:34:07 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:442 calls_made:1 call_cycle:0 05:34:07 24 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:34:07 24 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:34:14 24 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:34:15 24 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:34:15 24 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:34:15 24 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:34:15 24 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:34:15 24 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:34:18 24 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0442lz 05:34:18 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0442lz.x00 05:34:18 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0442lz.x01 05:34:18 24 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0442lz.r in process_file_group 05:34:18 24 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260442.log 05:34:18 24 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:34:18 24 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0442dz 05:34:18 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0442dz.x00 05:34:18 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0442dz.x01 05:34:18 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0442dz.x02 05:34:18 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0442dz.x03 05:34:18 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0442dz.x04 05:34:18 24 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0442dz.r in process_file_group 05:34:19 24 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [442] 05:34:19 24 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [442] 05:34:19 24 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260442) for profiles 05:34:19 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:34:19 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/674) 673 674 to QC_BAD because CT out of water 05:34:19 24 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.066m) 05:34:19 24 Mar 2017 UTC: INFO: QC.py(365): Changed (2/674) 2 275 to QC_PROBABLY_BAD because raw temperature spikes 05:34:19 24 Mar 2017 UTC: INFO: QC.py(377): Changed (1/674) 674 to QC_BAD because raw salinity below bound 05:34:19 24 Mar 2017 UTC: INFO: QC.py(408): Changed (1/674) 233 to QC_PROBABLY_BAD because raw conductivity spikes 05:34:19 24 Mar 2017 UTC: INFO: QC.py(180): Changed (2/674) 2 275 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:34:19 24 Mar 2017 UTC: INFO: QC.py(180): Changed (1/674) 233 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 05:34:19 24 Mar 2017 UTC: INFO: QC.py(180): Changed (1/674) 673 to QC_BAD because changed raw cond implies changed raw salinity 05:34:19 24 Mar 2017 UTC: INFO: QC.py(365): Changed (2/674) 2 275 to QC_INTERPOLATED because temperature spikes 05:34:19 24 Mar 2017 UTC: INFO: QC.py(377): Changed (1/674) 674 to QC_BAD because salinity below bound 05:34:19 24 Mar 2017 UTC: INFO: QC.py(408): Changed (1/674) 233 to QC_INTERPOLATED because conductivity spikes 05:34:19 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/674) 273:277 to QC_BAD because slow apogee CT flow 05:34:19 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/674) 1:6 to QC_BAD because prior to dive start 05:34:19 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/674) 672 to QC_BAD because end of climb 05:34:19 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/674) 1:6 273:277 672:674 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:34:19 24 Mar 2017 UTC: INFO: QC.py(180): Changed (14/674) 1:6 273:277 672:674 to QC_BAD because changed corrected salin implies changed speed 05:34:20 24 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:34:20 24 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 442 interp_salinity data_points in_between 364 415 % suspect thermal-inertia points 411 05:34:20 24 Mar 2017 UTC: INFO: QC.py(180): Changed (1/674) 233 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 05:34:20 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.48 cm/s 05:34:20 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.06 cm/s 05:34:20 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:34:20 24 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (205/674) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:34:20 24 Mar 2017 UTC: INFO: QC.py(180): Changed (1/674) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:34:20 24 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (205/674) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:34:20 24 Mar 2017 UTC: INFO: QC.py(180): Changed (1/674) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:34:20 24 Mar 2017 UTC: INFO: QC.py(180): Changed (14/674) 1:6 273:277 672:674 to QC_BAD because changed salinity implies changed optode oxygen 05:34:20 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:34:20 24 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:34:20 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 05:34:20 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 442: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.08% reduction 05:34:20 24 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.442 05:34:20 24 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:34:20 24 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:34:20 24 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:34:20 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 05:34:20 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 05:38:00 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 05:38:02 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 05:38:02 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 05:38:49 24 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:38:49 24 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:38:49 24 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:38:49 24 Mar 2017 UTC /home/sg626/p6260442.log /home/sg626/p6260442.eng /home/sg626/p6260442.asc /home/sg626/p6260442.pro /home/sg626/p6260442.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 05:38:49 24 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:38:49 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:38:49 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:38:49 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:38:49 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:38:49 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:38:49 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:38:49 24 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:38:49 24 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:38:49 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:38:49 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:38:49 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:38:49 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:38:49 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:38:49 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:38:49 24 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:38:49 24 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:38:49 24 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:38:49 24 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:38:49 24 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:38:49 24 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:38:49 24 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:38:49 24 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:38:49 24 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 05:38:49 24 Mar 2017 UTC 09:29:37 24 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 18840 09:29:37 24 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:32:53 24 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 19050 09:32:53 24 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:32:53 24 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:32:53 24 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:32:53 24 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:32:53 24 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170323233252 ] 09:32:53 24 Mar 2017 UTC: INFO: Base.py(1333): PID:19058 09:32:53 24 Mar 2017 UTC: INFO: Base.py(1375): Started processing 09:32:53 24 Mar 2017 UTC 09:32:53 24 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:32:54 24 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:32:54 24 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:32:54 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:32:54 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:443 calls_made:1 call_cycle:0 09:32:54 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:32:54 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:443 calls_made:1 call_cycle:0 09:32:54 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:32:54 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:443 calls_made:1 call_cycle:0 09:32:54 24 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:443 calls_made:1 call_cycle:0 2242.8540 -15800.3540 03/24/17 09:27:19 UTC) to sdrifter@soest.hawaii.edu 09:32:54 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:443 calls_made:1 call_cycle:0 09:32:54 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:32:54 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:443 calls_made:1 call_cycle:0 09:32:54 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:32:54 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:443 calls_made:1 call_cycle:0 09:32:54 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:32:54 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:443 calls_made:1 call_cycle:0 09:32:54 24 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:32:54 24 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:33:01 24 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:33:02 24 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:33:02 24 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:33:02 24 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:33:02 24 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:33:02 24 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:33:06 24 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0443lz 09:33:06 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0443lz.x00 09:33:06 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0443lz.x01 09:33:06 24 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0443lz.r in process_file_group 09:33:06 24 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260443.log 09:33:06 24 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:33:06 24 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0443dz 09:33:06 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0443dz.x00 09:33:06 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0443dz.x01 09:33:06 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0443dz.x02 09:33:06 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0443dz.x03 09:33:06 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0443dz.x04 09:33:06 24 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0443dz.r in process_file_group 09:33:06 24 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [443] 09:33:06 24 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [443] 09:33:06 24 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260443) for profiles 09:33:06 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 09:33:06 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/705) 705 to QC_BAD because CT out of water 09:33:06 24 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.009m) 09:33:06 24 Mar 2017 UTC: INFO: QC.py(365): Changed (2/705) 2 3 to QC_PROBABLY_BAD because raw temperature spikes 09:33:06 24 Mar 2017 UTC: INFO: QC.py(180): Changed (2/705) 2 3 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 09:33:06 24 Mar 2017 UTC: INFO: QC.py(180): Changed (1/705) 705 to QC_BAD because changed raw cond implies changed raw salinity 09:33:06 24 Mar 2017 UTC: INFO: QC.py(365): Changed (2/705) 2 3 to QC_INTERPOLATED because temperature spikes 09:33:06 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/705) 272:276 to QC_BAD because slow apogee CT flow 09:33:06 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/705) 1:6 to QC_BAD because prior to dive start 09:33:06 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/705) 704 to QC_BAD because end of climb 09:33:06 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/705) 1:6 272:276 704 705 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:33:06 24 Mar 2017 UTC: INFO: QC.py(180): Changed (13/705) 1:6 272:276 704 705 to QC_BAD because changed corrected salin implies changed speed 09:33:07 24 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:33:07 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.97 cm/s 09:33:07 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.97 cm/s 09:33:07 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:33:07 24 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (202/705) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:33:07 24 Mar 2017 UTC: INFO: QC.py(180): Changed (2/705) 2 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:33:07 24 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (202/705) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 09:33:07 24 Mar 2017 UTC: INFO: QC.py(180): Changed (2/705) 2 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:33:07 24 Mar 2017 UTC: INFO: QC.py(180): Changed (13/705) 1:6 272:276 704 705 to QC_BAD because changed salinity implies changed optode oxygen 09:33:07 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:33:07 24 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:33:07 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 09:33:07 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 443: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.84% reduction 09:33:08 24 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.443 09:33:08 24 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:33:08 24 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:33:08 24 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:33:08 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 09:33:08 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 09:36:52 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 09:36:54 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 09:36:54 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 09:37:41 24 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:37:41 24 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:37:41 24 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:37:41 24 Mar 2017 UTC /home/sg626/p6260443.log /home/sg626/p6260443.eng /home/sg626/p6260443.asc /home/sg626/p6260443.pro /home/sg626/p6260443.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 09:37:41 24 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:37:41 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:37:41 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:37:41 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:37:41 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:37:41 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:37:41 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:37:41 24 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:37:41 24 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:37:41 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:37:41 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:37:41 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:37:41 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:37:41 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:37:41 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:37:41 24 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:37:41 24 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:37:41 24 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:37:41 24 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:37:41 24 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:37:41 24 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:37:41 24 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:37:41 24 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:37:41 24 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 09:37:41 24 Mar 2017 UTC 13:27:08 24 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 25452 13:27:08 24 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:30:22 24 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 25656 13:30:22 24 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:30:22 24 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:30:22 24 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:30:22 24 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:30:22 24 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170324033021 ] 13:30:22 24 Mar 2017 UTC: INFO: Base.py(1333): PID:25664 13:30:22 24 Mar 2017 UTC: INFO: Base.py(1375): Started processing 13:30:22 24 Mar 2017 UTC 13:30:22 24 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:30:23 24 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:30:23 24 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:30:23 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:30:23 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:444 calls_made:1 call_cycle:0 13:30:23 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:30:23 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:444 calls_made:1 call_cycle:0 13:30:23 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:30:23 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:444 calls_made:1 call_cycle:0 13:30:23 24 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:444 calls_made:1 call_cycle:0 2241.4710 -15800.1920 03/24/17 13:24:48 UTC) to sdrifter@soest.hawaii.edu 13:30:23 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:444 calls_made:1 call_cycle:0 13:30:23 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:30:23 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:444 calls_made:1 call_cycle:0 13:30:23 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:30:23 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:444 calls_made:1 call_cycle:0 13:30:23 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:30:23 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:444 calls_made:1 call_cycle:0 13:30:23 24 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:30:23 24 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:30:30 24 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:30:32 24 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:30:32 24 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:30:32 24 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:30:32 24 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:30:32 24 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:30:35 24 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0444lz 13:30:35 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0444lz.x00 13:30:35 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0444lz.x01 13:30:35 24 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0444lz.r in process_file_group 13:30:35 24 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260444.log 13:30:35 24 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:30:35 24 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0444dz 13:30:35 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0444dz.x00 13:30:35 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0444dz.x01 13:30:35 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0444dz.x02 13:30:35 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0444dz.x03 13:30:35 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0444dz.x04 13:30:35 24 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0444dz.r in process_file_group 13:30:35 24 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [444] 13:30:35 24 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [444] 13:30:35 24 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260444) for profiles 13:30:35 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:30:36 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/704) 703 704 to QC_BAD because CT out of water 13:30:36 24 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.096m) 13:30:36 24 Mar 2017 UTC: INFO: QC.py(365): Changed (1/704) 2 to QC_PROBABLY_BAD because raw temperature spikes 13:30:36 24 Mar 2017 UTC: INFO: QC.py(377): Changed (1/704) 703 to QC_BAD because raw salinity below bound 13:30:36 24 Mar 2017 UTC: INFO: QC.py(408): Changed (1/704) 261 to QC_PROBABLY_BAD because raw conductivity spikes 13:30:36 24 Mar 2017 UTC: INFO: QC.py(180): Changed (1/704) 2 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:30:36 24 Mar 2017 UTC: INFO: QC.py(180): Changed (1/704) 261 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 13:30:36 24 Mar 2017 UTC: INFO: QC.py(180): Changed (1/704) 704 to QC_BAD because changed raw cond implies changed raw salinity 13:30:36 24 Mar 2017 UTC: INFO: QC.py(365): Changed (1/704) 2 to QC_INTERPOLATED because temperature spikes 13:30:36 24 Mar 2017 UTC: INFO: QC.py(377): Changed (1/704) 703 to QC_BAD because salinity below bound 13:30:36 24 Mar 2017 UTC: INFO: QC.py(408): Changed (1/704) 261 to QC_INTERPOLATED because conductivity spikes 13:30:36 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/704) 267:271 to QC_BAD because slow apogee CT flow 13:30:36 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/704) 1:6 to QC_BAD because prior to dive start 13:30:36 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/704) 702 to QC_BAD because end of climb 13:30:36 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/704) 1:6 267:271 702:704 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:30:36 24 Mar 2017 UTC: INFO: QC.py(180): Changed (14/704) 1:6 267:271 702:704 to QC_BAD because changed corrected salin implies changed speed 13:30:36 24 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:30:36 24 Mar 2017 UTC: INFO: QC.py(180): Changed (1/704) 261 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 13:30:36 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.83 cm/s 13:30:36 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.08 cm/s 13:30:36 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:30:36 24 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (205/704) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:30:36 24 Mar 2017 UTC: INFO: QC.py(180): Changed (1/704) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:30:36 24 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (205/704) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:30:36 24 Mar 2017 UTC: INFO: QC.py(180): Changed (1/704) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:30:36 24 Mar 2017 UTC: INFO: QC.py(180): Changed (14/704) 1:6 267:271 702:704 to QC_BAD because changed salinity implies changed optode oxygen 13:30:36 24 Mar 2017 UTC: INFO: QC.py(180): Changed (1/704) 261 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 13:30:36 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:30:36 24 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:30:36 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:30:37 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 444: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.99% reduction 13:30:37 24 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.444 13:30:37 24 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:30:37 24 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:30:37 24 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:30:37 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:30:37 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:34:19 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 13:34:21 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:34:21 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:35:08 24 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:35:08 24 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:35:08 24 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:35:08 24 Mar 2017 UTC /home/sg626/p6260444.log /home/sg626/p6260444.eng /home/sg626/p6260444.asc /home/sg626/p6260444.pro /home/sg626/p6260444.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:35:08 24 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:35:08 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:35:08 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:35:08 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:35:08 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:35:08 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:35:08 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:35:08 24 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:35:08 24 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:35:08 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:35:08 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:35:08 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:35:08 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:35:08 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:35:08 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:35:08 24 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:35:08 24 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:35:08 24 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:35:08 24 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:35:08 24 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:35:08 24 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:35:08 24 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:35:08 24 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:35:08 24 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 13:35:08 24 Mar 2017 UTC 17:24:08 24 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 32039 17:24:08 24 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:27:09 24 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 32168 17:27:09 24 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:27:09 24 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:27:09 24 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:27:09 24 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:27:09 24 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170324072709 ] 17:27:09 24 Mar 2017 UTC: INFO: Base.py(1333): PID:32175 17:27:09 24 Mar 2017 UTC: INFO: Base.py(1375): Started processing 17:27:09 24 Mar 2017 UTC 17:27:09 24 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:27:11 24 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:27:11 24 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:27:11 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:27:11 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:445 calls_made:1 call_cycle:0 17:27:11 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:27:11 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:445 calls_made:1 call_cycle:0 17:27:11 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:27:11 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:445 calls_made:1 call_cycle:0 17:27:11 24 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:445 calls_made:1 call_cycle:0 2239.9690 -15800.2430 03/24/17 17:21:54 UTC) to sdrifter@soest.hawaii.edu 17:27:11 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:445 calls_made:1 call_cycle:0 17:27:11 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:27:11 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:445 calls_made:1 call_cycle:0 17:27:11 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:27:11 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:445 calls_made:1 call_cycle:0 17:27:11 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:27:11 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:445 calls_made:1 call_cycle:0 17:27:11 24 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:27:11 24 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:27:18 24 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:27:19 24 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:27:19 24 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:27:19 24 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:27:19 24 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:27:19 24 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:27:22 24 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0445lz 17:27:22 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0445lz.x00 17:27:22 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0445lz.x01 17:27:22 24 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0445lz.r in process_file_group 17:27:22 24 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260445.log 17:27:22 24 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:27:22 24 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0445dz 17:27:22 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0445dz.x00 17:27:22 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0445dz.x01 17:27:22 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0445dz.x02 17:27:22 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0445dz.x03 17:27:22 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0445dz.x04 17:27:22 24 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0445dz.r in process_file_group 17:27:23 24 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [445] 17:27:23 24 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [445] 17:27:23 24 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260445) for profiles 17:27:23 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:27:23 24 Mar 2017 UTC: INFO: QC.py(365): Changed (1/693) 3 to QC_PROBABLY_BAD because raw temperature spikes 17:27:23 24 Mar 2017 UTC: INFO: QC.py(180): Changed (1/693) 3 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:27:23 24 Mar 2017 UTC: INFO: QC.py(365): Changed (1/693) 3 to QC_INTERPOLATED because temperature spikes 17:27:23 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/693) 271:275 to QC_BAD because slow apogee CT flow 17:27:23 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/693) 1:6 to QC_BAD because prior to dive start 17:27:23 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/693) 1:6 271:275 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:27:23 24 Mar 2017 UTC: INFO: QC.py(180): Changed (11/693) 1:6 271:275 to QC_BAD because changed corrected salin implies changed speed 17:27:23 24 Mar 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 693 17:27:24 24 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:27:24 24 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 445 interp_salinity data_points in_between 352 407 % suspect thermal-inertia points 17:27:24 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.34 cm/s 17:27:24 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.92 cm/s 17:27:24 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:27:24 24 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (201/693) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:27:24 24 Mar 2017 UTC: INFO: QC.py(180): Changed (1/693) 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:27:24 24 Mar 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/693) 693 to QC_BAD because slow flow in SBE43 17:27:24 24 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (201/693) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:27:24 24 Mar 2017 UTC: INFO: QC.py(180): Changed (1/693) 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:27:24 24 Mar 2017 UTC: INFO: QC.py(180): Changed (11/693) 1:6 271:275 to QC_BAD because changed salinity implies changed optode oxygen 17:27:24 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:27:24 24 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:27:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:27:24 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 445: Data set size for profile, binned and kkyy files reduced by 11 points, a 1.59% reduction 17:27:24 24 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.445 17:27:24 24 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:27:24 24 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:27:24 24 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:27:25 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:27:25 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:31:07 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 17:31:09 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:31:09 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:31:56 24 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:31:56 24 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:31:56 24 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:31:56 24 Mar 2017 UTC /home/sg626/p6260445.log /home/sg626/p6260445.eng /home/sg626/p6260445.asc /home/sg626/p6260445.pro /home/sg626/p6260445.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:31:56 24 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:31:56 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:31:56 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:31:56 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:31:56 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:31:56 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:31:56 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:31:56 24 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:31:56 24 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:31:56 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:31:56 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:31:56 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:31:56 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:31:56 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:31:56 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:31:56 24 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:31:56 24 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:31:56 24 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:31:56 24 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:31:56 24 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:31:56 24 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:31:56 24 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:31:56 24 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:31:56 24 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 17:31:56 24 Mar 2017 UTC 21:18:55 24 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 5834 21:18:55 24 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:22:09 24 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 6118 21:22:09 24 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:22:09 24 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:22:09 24 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:22:09 24 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:22:09 24 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170324112209 ] 21:22:09 24 Mar 2017 UTC: INFO: Base.py(1333): PID:6127 21:22:09 24 Mar 2017 UTC: INFO: Base.py(1375): Started processing 21:22:09 24 Mar 2017 UTC 21:22:09 24 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:22:11 24 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:22:11 24 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:22:11 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:22:11 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:446 calls_made:1 call_cycle:0 21:22:11 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:22:11 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:446 calls_made:1 call_cycle:0 21:22:11 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:22:11 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:446 calls_made:1 call_cycle:0 21:22:11 24 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:446 calls_made:1 call_cycle:0 2238.3770 -15801.0930 03/24/17 21:16:30 UTC) to sdrifter@soest.hawaii.edu 21:22:11 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:446 calls_made:1 call_cycle:0 21:22:11 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:22:11 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:446 calls_made:1 call_cycle:0 21:22:11 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:22:11 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:446 calls_made:1 call_cycle:0 21:22:11 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:22:11 24 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:446 calls_made:1 call_cycle:0 21:22:11 24 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:22:11 24 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:22:18 24 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:22:19 24 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:22:19 24 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:22:19 24 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:22:19 24 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:22:19 24 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:22:22 24 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0446lz 21:22:22 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0446lz.x00 21:22:22 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0446lz.x01 21:22:22 24 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0446lz.r in process_file_group 21:22:22 24 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260446.log 21:22:22 24 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:22:22 24 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0446dz 21:22:22 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0446dz.x00 21:22:22 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0446dz.x01 21:22:22 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0446dz.x02 21:22:22 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0446dz.x03 21:22:22 24 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0446dz.x04 21:22:22 24 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0446dz.r in process_file_group 21:22:23 24 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [446] 21:22:23 24 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [446] 21:22:23 24 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260446) for profiles 21:22:23 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:22:23 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/679) 677 678 to QC_BAD because CT out of water 21:22:23 24 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.059m) 21:22:23 24 Mar 2017 UTC: INFO: QC.py(365): Changed (4/679) 223 224 677 678 to QC_PROBABLY_BAD because raw temperature spikes 21:22:23 24 Mar 2017 UTC: INFO: QC.py(377): Changed (2/679) 678 679 to QC_BAD because raw salinity below bound 21:22:23 24 Mar 2017 UTC: INFO: QC.py(388): Changed (1/679) 679 to QC_BAD because bad raw salinity indicates raw conductivity issues 21:22:23 24 Mar 2017 UTC: INFO: QC.py(408): Changed (4/679) 224 260 282 601 to QC_PROBABLY_BAD because raw conductivity spikes 21:22:23 24 Mar 2017 UTC: INFO: QC.py(180): Changed (3/679) 223 224 677 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:22:23 24 Mar 2017 UTC: INFO: QC.py(180): Changed (3/679) 260 282 601 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 21:22:23 24 Mar 2017 UTC: INFO: QC.py(180): Changed (1/679) 677 to QC_BAD because changed raw cond implies changed raw salinity 21:22:23 24 Mar 2017 UTC: INFO: QC.py(365): Changed (4/679) 223 224 677 678 to QC_INTERPOLATED because temperature spikes 21:22:23 24 Mar 2017 UTC: INFO: QC.py(377): Changed (2/679) 678 679 to QC_BAD because salinity below bound 21:22:23 24 Mar 2017 UTC: INFO: QC.py(388): Changed (1/679) 679 to QC_BAD because bad salinity indicates conductivity issues 21:22:23 24 Mar 2017 UTC: INFO: QC.py(408): Changed (4/679) 224 260 282 601 to QC_INTERPOLATED because conductivity spikes 21:22:23 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/679) 271:275 to QC_BAD because slow apogee CT flow 21:22:23 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/679) 1:6 to QC_BAD because prior to dive start 21:22:23 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/679) 676 to QC_BAD because end of climb 21:22:23 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/679) 1:6 271:275 676:679 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:22:23 24 Mar 2017 UTC: INFO: QC.py(180): Changed (15/679) 1:6 271:275 676:679 to QC_BAD because changed corrected salin implies changed speed 21:22:24 24 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:22:24 24 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 446 interp_salinity data_points in_between 411 416 % suspect thermal-inertia points 413 414 21:22:24 24 Mar 2017 UTC: INFO: QC.py(180): Changed (2/679) 223 224 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 21:22:24 24 Mar 2017 UTC: INFO: QC.py(180): Changed (3/679) 260 282 601 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 21:22:24 24 Mar 2017 UTC: INFO: QC.py(180): Changed (2/679) 223 224 to QC_INTERPOLATED because changed corrected temp implies changed speed 21:22:24 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.16 cm/s 21:22:24 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.25 cm/s 21:22:24 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:22:24 24 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (205/679) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:22:24 24 Mar 2017 UTC: INFO: QC.py(180): Changed (2/679) 677 678 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:22:24 24 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (205/679) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:22:24 24 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (3/679) 677:679 to QC_BAD because bad aa4330 oyxgen 21:22:24 24 Mar 2017 UTC: INFO: QC.py(180): Changed (12/679) 1:6 271:275 676 to QC_BAD because changed salinity implies changed optode oxygen 21:22:24 24 Mar 2017 UTC: INFO: QC.py(180): Changed (1/679) 601 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 21:22:24 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:22:24 24 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:22:24 24 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:22:24 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 446: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.21% reduction 21:22:24 24 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.446 21:22:24 24 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:22:24 24 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:22:24 24 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:22:24 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:22:24 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 21:26:10 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 21:26:12 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 21:26:12 24 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 21:26:59 24 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:26:59 24 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:26:59 24 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:26:59 24 Mar 2017 UTC /home/sg626/p6260446.log /home/sg626/p6260446.eng /home/sg626/p6260446.asc /home/sg626/p6260446.pro /home/sg626/p6260446.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 21:26:59 24 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:26:59 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:26:59 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:26:59 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:26:59 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:26:59 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:26:59 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:26:59 24 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:26:59 24 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:26:59 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:26:59 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:26:59 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:26:59 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:26:59 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:26:59 24 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:26:59 24 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:26:59 24 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:26:59 24 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:26:59 24 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:26:59 24 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:26:59 24 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:26:59 24 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:26:59 24 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:26:59 24 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 21:26:59 24 Mar 2017 UTC 01:11:25 25 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 12030 01:11:25 25 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:14:39 25 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 12155 01:14:39 25 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:14:39 25 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:14:39 25 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:14:39 25 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:14:39 25 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170324151439 ] 01:14:39 25 Mar 2017 UTC: INFO: Base.py(1333): PID:12162 01:14:39 25 Mar 2017 UTC: INFO: Base.py(1375): Started processing 01:14:39 25 Mar 2017 UTC 01:14:39 25 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:14:41 25 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:14:41 25 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:14:41 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:14:41 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:447 calls_made:1 call_cycle:0 01:14:41 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:14:41 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:447 calls_made:1 call_cycle:0 01:14:41 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:14:41 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:447 calls_made:1 call_cycle:0 01:14:41 25 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:447 calls_made:1 call_cycle:0 2237.2540 -15802.2110 03/25/17 01:09:03 UTC) to sdrifter@soest.hawaii.edu 01:14:41 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:447 calls_made:1 call_cycle:0 01:14:41 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:14:41 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:447 calls_made:1 call_cycle:0 01:14:41 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:14:41 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:447 calls_made:1 call_cycle:0 01:14:41 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:14:41 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:447 calls_made:1 call_cycle:0 01:14:41 25 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:14:41 25 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:14:48 25 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:14:49 25 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:14:49 25 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:14:49 25 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:14:49 25 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:14:49 25 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:14:52 25 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0447lz 01:14:52 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0447lz.x00 01:14:52 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0447lz.x01 01:14:52 25 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0447lz.r in process_file_group 01:14:52 25 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260447.log 01:14:52 25 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:14:52 25 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0447dz 01:14:52 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0447dz.x00 01:14:52 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0447dz.x01 01:14:52 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0447dz.x02 01:14:52 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0447dz.x03 01:14:52 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0447dz.x04 01:14:52 25 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0447dz.r in process_file_group 01:14:53 25 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [447] 01:14:53 25 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [447] 01:14:53 25 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260447) for profiles 01:14:53 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:14:53 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (4/702) 698 700:702 to QC_BAD because CT out of water 01:14:53 25 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.120m) 01:14:53 25 Mar 2017 UTC: INFO: QC.py(365): Changed (5/702) 681 696 697 700 701 to QC_PROBABLY_BAD because raw temperature spikes 01:14:53 25 Mar 2017 UTC: INFO: QC.py(377): Changed (2/702) 698 700 to QC_BAD because raw salinity below bound 01:14:53 25 Mar 2017 UTC: INFO: QC.py(408): Changed (1/702) 608 to QC_PROBABLY_BAD because raw conductivity spikes 01:14:53 25 Mar 2017 UTC: INFO: QC.py(180): Changed (4/702) 681 696 697 701 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:14:53 25 Mar 2017 UTC: INFO: QC.py(180): Changed (1/702) 608 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 01:14:53 25 Mar 2017 UTC: INFO: QC.py(180): Changed (2/702) 701 702 to QC_BAD because changed raw cond implies changed raw salinity 01:14:53 25 Mar 2017 UTC: INFO: QC.py(365): Changed (5/702) 681 696 697 700 701 to QC_INTERPOLATED because temperature spikes 01:14:53 25 Mar 2017 UTC: INFO: QC.py(377): Changed (2/702) 698 700 to QC_BAD because salinity below bound 01:14:53 25 Mar 2017 UTC: INFO: QC.py(408): Changed (1/702) 608 to QC_INTERPOLATED because conductivity spikes 01:14:53 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/702) 250:254 to QC_BAD because slow apogee CT flow 01:14:53 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/702) 1:6 to QC_BAD because prior to dive start 01:14:53 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/702) 697 699 to QC_BAD because end of climb 01:14:53 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (17/702) 1:6 250:254 697:702 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:14:53 25 Mar 2017 UTC: INFO: QC.py(180): Changed (17/702) 1:6 250:254 697:702 to QC_BAD because changed corrected salin implies changed speed 01:14:54 25 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:14:54 25 Mar 2017 UTC: INFO: QC.py(180): Changed (2/702) 681 696 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 01:14:54 25 Mar 2017 UTC: INFO: QC.py(180): Changed (1/702) 608 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 01:14:54 25 Mar 2017 UTC: INFO: QC.py(180): Changed (2/702) 681 696 to QC_INTERPOLATED because changed corrected temp implies changed speed 01:14:54 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.36 cm/s 01:14:54 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.26 cm/s 01:14:54 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:14:54 25 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (197/702) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:14:54 25 Mar 2017 UTC: INFO: QC.py(180): Changed (5/702) 681 696 697 700 701 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 01:14:54 25 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (197/702) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 01:14:54 25 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/702) 695 698 to QC_BAD because bad aa4330 oyxgen 01:14:54 25 Mar 2017 UTC: INFO: QC.py(180): Changed (5/702) 681 696 697 700 701 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 01:14:54 25 Mar 2017 UTC: INFO: QC.py(180): Changed (16/702) 1:6 250:254 697 699:702 to QC_BAD because changed salinity implies changed optode oxygen 01:14:54 25 Mar 2017 UTC: INFO: QC.py(180): Changed (1/702) 608 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 01:14:54 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:14:54 25 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:14:54 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:14:54 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 447: Data set size for profile, binned and kkyy files reduced by 17 points, a 2.42% reduction 01:14:54 25 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.447 01:14:54 25 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:14:54 25 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:14:54 25 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:14:54 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:14:54 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 01:18:39 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 01:18:41 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 01:18:41 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 01:19:28 25 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:19:28 25 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:19:28 25 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:19:28 25 Mar 2017 UTC /home/sg626/p6260447.log /home/sg626/p6260447.eng /home/sg626/p6260447.asc /home/sg626/p6260447.pro /home/sg626/p6260447.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 01:19:28 25 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:19:28 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:19:28 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:19:28 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:19:28 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:19:28 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:19:28 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:19:28 25 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:19:28 25 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:19:28 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:19:28 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:19:28 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:19:28 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:19:28 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:19:28 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:19:28 25 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:19:28 25 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:19:28 25 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:19:28 25 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:19:28 25 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:19:28 25 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:19:28 25 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:19:28 25 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:19:28 25 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 01:19:28 25 Mar 2017 UTC 05:14:35 25 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 18506 05:14:35 25 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:17:41 25 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 18630 05:17:41 25 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:17:41 25 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:17:41 25 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:17:41 25 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:17:41 25 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170324191741 ] 05:17:41 25 Mar 2017 UTC: INFO: Base.py(1333): PID:18637 05:17:41 25 Mar 2017 UTC: INFO: Base.py(1375): Started processing 05:17:41 25 Mar 2017 UTC 05:17:41 25 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:17:42 25 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:17:42 25 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:17:42 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:17:42 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:448 calls_made:1 call_cycle:0 05:17:42 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:17:42 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:448 calls_made:1 call_cycle:0 05:17:42 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:17:42 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:448 calls_made:1 call_cycle:0 05:17:42 25 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:448 calls_made:1 call_cycle:0 2238.3610 -15801.9900 03/25/17 05:12:18 UTC) to sdrifter@soest.hawaii.edu 05:17:43 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:448 calls_made:1 call_cycle:0 05:17:43 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:17:43 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:448 calls_made:1 call_cycle:0 05:17:43 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:17:43 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:448 calls_made:1 call_cycle:0 05:17:43 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:17:43 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:448 calls_made:1 call_cycle:0 05:17:43 25 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:17:43 25 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:17:50 25 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:17:51 25 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:17:51 25 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:17:51 25 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:17:51 25 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:17:51 25 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:17:54 25 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0448lz 05:17:54 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0448lz.x00 05:17:54 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0448lz.x01 05:17:54 25 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0448lz.r in process_file_group 05:17:54 25 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260448.log 05:17:54 25 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:17:54 25 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0448dz 05:17:54 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0448dz.x00 05:17:54 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0448dz.x01 05:17:54 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0448dz.x02 05:17:54 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0448dz.x03 05:17:54 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0448dz.x04 05:17:54 25 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0448dz.r in process_file_group 05:17:55 25 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [448] 05:17:55 25 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [448] 05:17:55 25 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260448) for profiles 05:17:55 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:17:55 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/703) 702 to QC_BAD because CT out of water 05:17:55 25 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.030m) 05:17:55 25 Mar 2017 UTC: INFO: QC.py(365): Changed (2/703) 259 702 to QC_PROBABLY_BAD because raw temperature spikes 05:17:55 25 Mar 2017 UTC: INFO: QC.py(377): Changed (2/703) 702 703 to QC_BAD because raw salinity below bound 05:17:55 25 Mar 2017 UTC: INFO: QC.py(388): Changed (1/703) 703 to QC_BAD because bad raw salinity indicates raw conductivity issues 05:17:55 25 Mar 2017 UTC: INFO: QC.py(408): Changed (2/703) 259 302 to QC_PROBABLY_BAD because raw conductivity spikes 05:17:55 25 Mar 2017 UTC: INFO: QC.py(180): Changed (1/703) 259 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:17:55 25 Mar 2017 UTC: INFO: QC.py(180): Changed (1/703) 302 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 05:17:55 25 Mar 2017 UTC: INFO: QC.py(365): Changed (2/703) 259 702 to QC_INTERPOLATED because temperature spikes 05:17:55 25 Mar 2017 UTC: INFO: QC.py(377): Changed (2/703) 702 703 to QC_BAD because salinity below bound 05:17:55 25 Mar 2017 UTC: INFO: QC.py(388): Changed (1/703) 703 to QC_BAD because bad salinity indicates conductivity issues 05:17:55 25 Mar 2017 UTC: INFO: QC.py(408): Changed (2/703) 259 302 to QC_INTERPOLATED because conductivity spikes 05:17:55 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/703) 266:270 to QC_BAD because slow apogee CT flow 05:17:55 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/703) 1:6 to QC_BAD because prior to dive start 05:17:55 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/703) 1:6 266:270 702 703 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:17:55 25 Mar 2017 UTC: INFO: QC.py(180): Changed (13/703) 1:6 266:270 702 703 to QC_BAD because changed corrected salin implies changed speed 05:17:56 25 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:17:56 25 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 448 interp_salinity data_points in_between 454 464 % suspect thermal-inertia points 458 05:17:56 25 Mar 2017 UTC: INFO: QC.py(180): Changed (1/703) 259 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 05:17:56 25 Mar 2017 UTC: INFO: QC.py(180): Changed (1/703) 302 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 05:17:56 25 Mar 2017 UTC: INFO: QC.py(180): Changed (1/703) 259 to QC_INTERPOLATED because changed corrected temp implies changed speed 05:17:56 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.20 cm/s 05:17:56 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.33 cm/s 05:17:56 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:17:56 25 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (211/703) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:17:56 25 Mar 2017 UTC: INFO: QC.py(180): Changed (1/703) 702 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:17:56 25 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (211/703) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:17:56 25 Mar 2017 UTC: INFO: QC.py(180): Changed (1/703) 702 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:17:56 25 Mar 2017 UTC: INFO: QC.py(180): Changed (13/703) 1:6 266:270 702 703 to QC_BAD because changed salinity implies changed optode oxygen 05:17:56 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:17:56 25 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:17:56 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 05:17:56 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 448: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.85% reduction 05:17:56 25 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.448 05:17:56 25 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:17:56 25 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:17:56 25 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:17:57 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 05:17:57 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 05:21:42 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 05:21:43 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 05:21:43 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 05:22:30 25 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:22:30 25 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:22:30 25 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:22:30 25 Mar 2017 UTC /home/sg626/p6260448.log /home/sg626/p6260448.eng /home/sg626/p6260448.asc /home/sg626/p6260448.pro /home/sg626/p6260448.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 05:22:30 25 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:22:30 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:22:30 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:22:30 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:22:30 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:22:30 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:22:30 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:22:30 25 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:22:30 25 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:22:30 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:22:30 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:22:30 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:22:30 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:22:30 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:22:30 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:22:30 25 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:22:30 25 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:22:30 25 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:22:30 25 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:22:30 25 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:22:30 25 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:22:30 25 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:22:30 25 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:22:30 25 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 05:22:30 25 Mar 2017 UTC 09:12:09 25 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 24647 09:12:09 25 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:15:21 25 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 24777 09:15:21 25 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:15:21 25 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:15:21 25 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:15:21 25 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:15:21 25 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170324231520 ] 09:15:21 25 Mar 2017 UTC: INFO: Base.py(1333): PID:24785 09:15:21 25 Mar 2017 UTC: INFO: Base.py(1375): Started processing 09:15:21 25 Mar 2017 UTC 09:15:21 25 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:15:22 25 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:15:22 25 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:15:22 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:15:22 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:449 calls_made:1 call_cycle:0 09:15:22 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:15:22 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:449 calls_made:1 call_cycle:0 09:15:22 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:15:22 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:449 calls_made:1 call_cycle:0 09:15:22 25 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:449 calls_made:1 call_cycle:0 2239.4050 -15801.9280 03/25/17 09:09:48 UTC) to sdrifter@soest.hawaii.edu 09:15:22 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:449 calls_made:1 call_cycle:0 09:15:22 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:15:22 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:449 calls_made:1 call_cycle:0 09:15:22 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:15:22 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:449 calls_made:1 call_cycle:0 09:15:22 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:15:22 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:449 calls_made:1 call_cycle:0 09:15:22 25 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:15:22 25 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:15:29 25 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:15:31 25 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:15:31 25 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:15:31 25 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:15:31 25 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:15:31 25 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:15:34 25 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0449lz 09:15:34 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0449lz.x00 09:15:34 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0449lz.x01 09:15:34 25 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0449lz.r in process_file_group 09:15:34 25 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260449.log 09:15:34 25 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:15:34 25 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0449dz 09:15:34 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0449dz.x00 09:15:34 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0449dz.x01 09:15:34 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0449dz.x02 09:15:34 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0449dz.x03 09:15:34 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0449dz.x04 09:15:34 25 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0449dz.r in process_file_group 09:15:34 25 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [449] 09:15:34 25 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [449] 09:15:34 25 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260449) for profiles 09:15:34 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 09:15:35 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/719) 718 719 to QC_BAD because CT out of water 09:15:35 25 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.030m) 09:15:35 25 Mar 2017 UTC: INFO: QC.py(365): Changed (4/719) 4 282 717 718 to QC_PROBABLY_BAD because raw temperature spikes 09:15:35 25 Mar 2017 UTC: INFO: QC.py(377): Changed (1/719) 719 to QC_BAD because raw salinity below bound 09:15:35 25 Mar 2017 UTC: INFO: QC.py(408): Changed (1/719) 282 to QC_PROBABLY_BAD because raw conductivity spikes 09:15:35 25 Mar 2017 UTC: INFO: QC.py(180): Changed (4/719) 4 282 717 718 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 09:15:35 25 Mar 2017 UTC: INFO: QC.py(180): Changed (1/719) 718 to QC_BAD because changed raw cond implies changed raw salinity 09:15:35 25 Mar 2017 UTC: INFO: QC.py(365): Changed (4/719) 4 282 717 718 to QC_INTERPOLATED because temperature spikes 09:15:35 25 Mar 2017 UTC: INFO: QC.py(377): Changed (1/719) 719 to QC_BAD because salinity below bound 09:15:35 25 Mar 2017 UTC: INFO: QC.py(408): Changed (1/719) 282 to QC_INTERPOLATED because conductivity spikes 09:15:35 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/719) 282:286 to QC_BAD because slow apogee CT flow 09:15:35 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/719) 1:6 to QC_BAD because prior to dive start 09:15:35 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/719) 1:6 282:286 718 719 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:15:35 25 Mar 2017 UTC: INFO: QC.py(180): Changed (13/719) 1:6 282:286 718 719 to QC_BAD because changed corrected salin implies changed speed 09:15:35 25 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:15:35 25 Mar 2017 UTC: INFO: QC.py(180): Changed (1/719) 717 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 09:15:35 25 Mar 2017 UTC: INFO: QC.py(180): Changed (1/719) 717 to QC_INTERPOLATED because changed corrected temp implies changed speed 09:15:35 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.83 cm/s 09:15:35 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.97 cm/s 09:15:35 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:15:35 25 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (200/719) 158:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:15:35 25 Mar 2017 UTC: INFO: QC.py(180): Changed (3/719) 4 717 718 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:15:35 25 Mar 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/719) 717 to QC_BAD because slow flow in SBE43 09:15:35 25 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (200/719) 158:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 09:15:35 25 Mar 2017 UTC: INFO: QC.py(180): Changed (3/719) 4 717 718 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:15:35 25 Mar 2017 UTC: INFO: QC.py(180): Changed (13/719) 1:6 282:286 718 719 to QC_BAD because changed salinity implies changed optode oxygen 09:15:35 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:15:35 25 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:15:35 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 09:15:36 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 449: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.81% reduction 09:15:36 25 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.449 09:15:36 25 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:15:36 25 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:15:36 25 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:15:36 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 09:15:36 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 09:19:21 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 09:19:22 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 09:19:22 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 09:20:10 25 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:20:10 25 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:20:10 25 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:20:10 25 Mar 2017 UTC /home/sg626/p6260449.log /home/sg626/p6260449.eng /home/sg626/p6260449.asc /home/sg626/p6260449.pro /home/sg626/p6260449.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 09:20:10 25 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:20:10 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:20:10 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:20:10 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:20:10 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:20:10 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:20:10 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:20:10 25 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:20:10 25 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:20:10 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:20:10 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:20:10 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:20:10 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:20:10 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:20:10 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:20:10 25 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:20:10 25 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:20:10 25 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:20:10 25 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:20:10 25 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:20:10 25 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:20:10 25 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:20:10 25 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:20:10 25 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 09:20:10 25 Mar 2017 UTC 13:15:48 25 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 31410 13:15:48 25 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:20:31 25 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 31635 13:20:31 25 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:20:31 25 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:20:31 25 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:20:31 25 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:20:31 25 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170325032030 ] 13:20:31 25 Mar 2017 UTC: INFO: Base.py(1333): PID:31642 13:20:31 25 Mar 2017 UTC: INFO: Base.py(1375): Started processing 13:20:31 25 Mar 2017 UTC 13:20:32 25 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:20:33 25 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:20:33 25 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:20:33 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:20:33 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:450 calls_made:1 call_cycle:0 13:20:33 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:20:33 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:450 calls_made:1 call_cycle:0 13:20:33 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:20:33 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:450 calls_made:1 call_cycle:0 13:20:33 25 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:450 calls_made:1 call_cycle:0 2240.5180 -15801.7250 03/25/17 13:13:31 UTC) to sdrifter@soest.hawaii.edu 13:20:33 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:450 calls_made:1 call_cycle:0 13:20:33 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:20:33 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:450 calls_made:1 call_cycle:0 13:20:33 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:20:33 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:450 calls_made:1 call_cycle:0 13:20:33 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:20:33 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:450 calls_made:1 call_cycle:0 13:20:33 25 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:20:33 25 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:20:40 25 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:20:41 25 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:20:41 25 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:20:41 25 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:20:41 25 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:20:41 25 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:20:45 25 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0450lz 13:20:45 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0450lz.x00 13:20:45 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0450lz.x01 13:20:45 25 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0450lz.r in process_file_group 13:20:45 25 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260450.log 13:20:45 25 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:20:45 25 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0450dz 13:20:45 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0450dz.x00 13:20:45 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0450dz.x01 13:20:45 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0450dz.x02 13:20:45 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0450dz.x03 13:20:45 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0450dz.x04 13:20:45 25 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0450dz.r in process_file_group 13:20:45 25 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [450] 13:20:45 25 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [450] 13:20:45 25 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260450) for profiles 13:20:45 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:20:46 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/714) 714 to QC_BAD because CT out of water 13:20:46 25 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.015m) 13:20:46 25 Mar 2017 UTC: INFO: QC.py(365): Changed (5/714) 2 3 258 276 286 to QC_PROBABLY_BAD because raw temperature spikes 13:20:46 25 Mar 2017 UTC: INFO: QC.py(408): Changed (2/714) 274 276 to QC_PROBABLY_BAD because raw conductivity spikes 13:20:46 25 Mar 2017 UTC: INFO: QC.py(180): Changed (5/714) 2 3 258 276 286 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:20:46 25 Mar 2017 UTC: INFO: QC.py(180): Changed (1/714) 274 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 13:20:46 25 Mar 2017 UTC: INFO: QC.py(180): Changed (1/714) 714 to QC_BAD because changed raw cond implies changed raw salinity 13:20:46 25 Mar 2017 UTC: INFO: QC.py(365): Changed (5/714) 2 3 258 276 286 to QC_INTERPOLATED because temperature spikes 13:20:46 25 Mar 2017 UTC: INFO: QC.py(408): Changed (2/714) 274 276 to QC_INTERPOLATED because conductivity spikes 13:20:46 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/714) 280:284 to QC_BAD because slow apogee CT flow 13:20:46 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/714) 1:6 to QC_BAD because prior to dive start 13:20:46 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/714) 1:6 280:284 714 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:20:46 25 Mar 2017 UTC: INFO: QC.py(180): Changed (12/714) 1:6 280:284 714 to QC_BAD because changed corrected salin implies changed speed 13:20:46 25 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:20:46 25 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 450 interp_salinity data_points in_between 375 418 % suspect thermal-inertia points 390 13:20:46 25 Mar 2017 UTC: INFO: QC.py(180): Changed (3/714) 258 276 286 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 13:20:46 25 Mar 2017 UTC: INFO: QC.py(180): Changed (1/714) 274 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 13:20:46 25 Mar 2017 UTC: INFO: QC.py(180): Changed (3/714) 258 276 286 to QC_INTERPOLATED because changed corrected temp implies changed speed 13:20:46 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.64 cm/s 13:20:46 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.98 cm/s 13:20:46 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:20:46 25 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (212/714) 154 155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:20:46 25 Mar 2017 UTC: INFO: QC.py(180): Changed (4/714) 2 3 276 286 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:20:46 25 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (212/714) 154 155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:20:46 25 Mar 2017 UTC: INFO: QC.py(180): Changed (4/714) 2 3 276 286 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:20:46 25 Mar 2017 UTC: INFO: QC.py(180): Changed (12/714) 1:6 280:284 714 to QC_BAD because changed salinity implies changed optode oxygen 13:20:46 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:20:46 25 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:20:46 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:20:47 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 450: Data set size for profile, binned and kkyy files reduced by 12 points, a 1.68% reduction 13:20:47 25 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.450 13:20:47 25 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:20:47 25 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:20:47 25 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:20:47 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:20:47 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:24:35 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 13:24:36 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:24:36 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:25:24 25 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:25:24 25 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:25:24 25 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:25:24 25 Mar 2017 UTC /home/sg626/p6260450.log /home/sg626/p6260450.eng /home/sg626/p6260450.asc /home/sg626/p6260450.pro /home/sg626/p6260450.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:25:24 25 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:25:24 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:25:24 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:25:24 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:25:24 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:25:24 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:25:24 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:25:24 25 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:25:24 25 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:25:24 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:25:24 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:25:24 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:25:24 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:25:24 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:25:24 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:25:24 25 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:25:24 25 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:25:24 25 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:25:24 25 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:25:24 25 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:25:24 25 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:25:24 25 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:25:24 25 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:25:24 25 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 13:25:24 25 Mar 2017 UTC 17:22:04 25 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 5518 17:22:04 25 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:25:17 25 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 5649 17:25:17 25 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:25:17 25 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:25:17 25 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:25:17 25 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:25:17 25 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170325072516 ] 17:25:17 25 Mar 2017 UTC: INFO: Base.py(1333): PID:5656 17:25:17 25 Mar 2017 UTC: INFO: Base.py(1375): Started processing 17:25:17 25 Mar 2017 UTC 17:25:17 25 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:25:18 25 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:25:18 25 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:25:18 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:25:18 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:451 calls_made:1 call_cycle:0 17:25:18 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:25:18 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:451 calls_made:1 call_cycle:0 17:25:18 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:25:18 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:451 calls_made:1 call_cycle:0 17:25:18 25 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:451 calls_made:1 call_cycle:0 2241.9210 -15801.2240 03/25/17 17:19:46 UTC) to sdrifter@soest.hawaii.edu 17:25:18 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:451 calls_made:1 call_cycle:0 17:25:18 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:25:18 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:451 calls_made:1 call_cycle:0 17:25:18 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:25:18 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:451 calls_made:1 call_cycle:0 17:25:18 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:25:18 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:451 calls_made:1 call_cycle:0 17:25:18 25 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:25:18 25 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:25:25 25 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:25:26 25 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:25:26 25 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:25:26 25 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:25:26 25 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:25:26 25 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:25:30 25 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0451lz 17:25:30 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0451lz.x00 17:25:30 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0451lz.x01 17:25:30 25 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0451lz.r in process_file_group 17:25:30 25 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260451.log 17:25:30 25 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:25:30 25 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0451dz 17:25:30 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0451dz.x00 17:25:30 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0451dz.x01 17:25:30 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0451dz.x02 17:25:30 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0451dz.x03 17:25:30 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0451dz.x04 17:25:30 25 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0451dz.r in process_file_group 17:25:30 25 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [451] 17:25:30 25 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [451] 17:25:30 25 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260451) for profiles 17:25:30 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:25:30 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/737) 737 to QC_BAD because CT out of water 17:25:30 25 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.071m) 17:25:30 25 Mar 2017 UTC: INFO: QC.py(365): Changed (2/737) 5 278 to QC_PROBABLY_BAD because raw temperature spikes 17:25:30 25 Mar 2017 UTC: INFO: QC.py(180): Changed (2/737) 5 278 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:25:30 25 Mar 2017 UTC: INFO: QC.py(180): Changed (1/737) 737 to QC_BAD because changed raw cond implies changed raw salinity 17:25:31 25 Mar 2017 UTC: INFO: QC.py(365): Changed (2/737) 5 278 to QC_INTERPOLATED because temperature spikes 17:25:31 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/737) 276:280 to QC_BAD because slow apogee CT flow 17:25:31 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/737) 1:6 to QC_BAD because prior to dive start 17:25:31 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/737) 736 to QC_BAD because end of climb 17:25:31 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/737) 1:6 276:280 736 737 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:25:31 25 Mar 2017 UTC: INFO: QC.py(180): Changed (13/737) 1:6 276:280 736 737 to QC_BAD because changed corrected salin implies changed speed 17:25:31 25 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:25:31 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.29 cm/s 17:25:31 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.08 cm/s 17:25:31 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:25:31 25 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (208/737) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:25:31 25 Mar 2017 UTC: INFO: QC.py(180): Changed (1/737) 5 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:25:31 25 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (208/737) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:25:31 25 Mar 2017 UTC: INFO: QC.py(180): Changed (1/737) 5 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:25:31 25 Mar 2017 UTC: INFO: QC.py(180): Changed (13/737) 1:6 276:280 736 737 to QC_BAD because changed salinity implies changed optode oxygen 17:25:31 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:25:31 25 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:25:31 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:25:32 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 451: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.76% reduction 17:25:32 25 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.451 17:25:32 25 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:25:32 25 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:25:32 25 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:25:32 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:25:32 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:29:20 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 17:29:22 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:29:22 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:30:10 25 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:30:10 25 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:30:10 25 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:30:10 25 Mar 2017 UTC /home/sg626/p6260451.log /home/sg626/p6260451.eng /home/sg626/p6260451.asc /home/sg626/p6260451.pro /home/sg626/p6260451.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:30:10 25 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:30:10 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:30:10 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:30:10 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:30:10 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:30:10 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:30:10 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:30:10 25 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:30:10 25 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:30:10 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:30:10 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:30:10 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:30:10 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:30:10 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:30:10 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:30:10 25 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:30:10 25 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:30:10 25 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:30:10 25 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:30:10 25 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:30:10 25 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:30:10 25 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:30:10 25 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:30:10 25 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 17:30:10 25 Mar 2017 UTC 21:28:40 25 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 12083 21:28:40 25 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:31:53 25 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 12304 21:31:53 25 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:31:53 25 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:31:53 25 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:31:53 25 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:31:53 25 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170325113153 ] 21:31:53 25 Mar 2017 UTC: INFO: Base.py(1333): PID:12312 21:31:54 25 Mar 2017 UTC: INFO: Base.py(1375): Started processing 21:31:54 25 Mar 2017 UTC 21:31:54 25 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:31:55 25 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:31:55 25 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:31:55 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:31:55 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:452 calls_made:1 call_cycle:0 21:31:55 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:31:55 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:452 calls_made:1 call_cycle:0 21:31:55 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:31:55 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:452 calls_made:1 call_cycle:0 21:31:55 25 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:452 calls_made:1 call_cycle:0 2243.0450 -15800.9690 03/25/17 21:26:18 UTC) to sdrifter@soest.hawaii.edu 21:31:55 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:452 calls_made:1 call_cycle:0 21:31:55 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:31:55 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:452 calls_made:1 call_cycle:0 21:31:55 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:31:55 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:452 calls_made:1 call_cycle:0 21:31:55 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:31:55 25 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:452 calls_made:1 call_cycle:0 21:31:55 25 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:31:55 25 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:32:02 25 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:32:03 25 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:32:03 25 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:32:03 25 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:32:03 25 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:32:03 25 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:32:06 25 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0452lz 21:32:06 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0452lz.x00 21:32:06 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0452lz.x01 21:32:06 25 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0452lz.r in process_file_group 21:32:06 25 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260452.log 21:32:06 25 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:32:06 25 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0452dz 21:32:06 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0452dz.x00 21:32:06 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0452dz.x01 21:32:06 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0452dz.x02 21:32:06 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0452dz.x03 21:32:06 25 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0452dz.x04 21:32:06 25 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0452dz.r in process_file_group 21:32:07 25 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [452] 21:32:07 25 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [452] 21:32:07 25 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260452) for profiles 21:32:07 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:32:07 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/755) 754 to QC_BAD because CT out of water 21:32:07 25 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.001m) 21:32:07 25 Mar 2017 UTC: INFO: QC.py(365): Changed (3/755) 2 282 754 to QC_PROBABLY_BAD because raw temperature spikes 21:32:07 25 Mar 2017 UTC: INFO: QC.py(377): Changed (1/755) 754 to QC_BAD because raw salinity below bound 21:32:07 25 Mar 2017 UTC: INFO: QC.py(408): Changed (1/755) 282 to QC_PROBABLY_BAD because raw conductivity spikes 21:32:07 25 Mar 2017 UTC: INFO: QC.py(180): Changed (2/755) 2 282 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:32:07 25 Mar 2017 UTC: INFO: QC.py(365): Changed (3/755) 2 282 754 to QC_INTERPOLATED because temperature spikes 21:32:07 25 Mar 2017 UTC: INFO: QC.py(377): Changed (1/755) 754 to QC_BAD because salinity below bound 21:32:07 25 Mar 2017 UTC: INFO: QC.py(408): Changed (1/755) 282 to QC_INTERPOLATED because conductivity spikes 21:32:07 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/755) 284:288 to QC_BAD because slow apogee CT flow 21:32:07 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/755) 1:6 to QC_BAD because prior to dive start 21:32:07 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/755) 753 755 to QC_BAD because end of climb 21:32:07 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/755) 1:6 284:288 753:755 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:32:07 25 Mar 2017 UTC: INFO: QC.py(180): Changed (14/755) 1:6 284:288 753:755 to QC_BAD because changed corrected salin implies changed speed 21:32:08 25 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:32:08 25 Mar 2017 UTC: INFO: QC.py(180): Changed (1/755) 282 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 21:32:08 25 Mar 2017 UTC: INFO: QC.py(180): Changed (1/755) 282 to QC_INTERPOLATED because changed corrected temp implies changed speed 21:32:08 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.19 cm/s 21:32:08 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.15 cm/s 21:32:08 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:32:08 25 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (210/755) 158:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:32:08 25 Mar 2017 UTC: INFO: QC.py(180): Changed (2/755) 2 754 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:32:08 25 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (210/755) 158:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:32:08 25 Mar 2017 UTC: INFO: QC.py(180): Changed (2/755) 2 754 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:32:08 25 Mar 2017 UTC: INFO: QC.py(180): Changed (14/755) 1:6 284:288 753:755 to QC_BAD because changed salinity implies changed optode oxygen 21:32:08 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:32:08 25 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:32:08 25 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:32:09 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 452: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.85% reduction 21:32:09 25 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.452 21:32:09 25 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:32:09 25 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:32:09 25 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:32:09 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:32:09 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 21:35:59 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 21:36:00 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 21:36:00 25 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 21:36:48 25 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:36:48 25 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:36:48 25 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:36:48 25 Mar 2017 UTC /home/sg626/p6260452.log /home/sg626/p6260452.eng /home/sg626/p6260452.asc /home/sg626/p6260452.pro /home/sg626/p6260452.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 21:36:48 25 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:36:48 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:36:48 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:36:48 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:36:48 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:36:48 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:36:48 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:36:48 25 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:36:48 25 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:36:48 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:36:48 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:36:48 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:36:48 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:36:48 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:36:48 25 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:36:48 25 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:36:48 25 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:36:48 25 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:36:48 25 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:36:48 25 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:36:48 25 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:36:48 25 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:36:48 25 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:36:48 25 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 21:36:48 25 Mar 2017 UTC 01:32:32 26 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 22335 01:32:32 26 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:35:52 26 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 22521 01:35:52 26 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:35:52 26 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:35:52 26 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:35:52 26 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:35:52 26 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170325153551 ] 01:35:52 26 Mar 2017 UTC: INFO: Base.py(1333): PID:22528 01:35:52 26 Mar 2017 UTC: INFO: Base.py(1375): Started processing 01:35:52 26 Mar 2017 UTC 01:35:52 26 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:35:53 26 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:35:53 26 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:35:53 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:35:53 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:453 calls_made:1 call_cycle:0 01:35:53 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:35:53 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:453 calls_made:1 call_cycle:0 01:35:53 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:35:53 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:453 calls_made:1 call_cycle:0 01:35:53 26 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:453 calls_made:1 call_cycle:0 2244.0900 -15800.8400 03/26/17 01:30:14 UTC) to sdrifter@soest.hawaii.edu 01:35:54 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:453 calls_made:1 call_cycle:0 01:35:54 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:35:54 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:453 calls_made:1 call_cycle:0 01:35:54 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:35:54 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:453 calls_made:1 call_cycle:0 01:35:54 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:35:54 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:453 calls_made:1 call_cycle:0 01:35:54 26 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:35:54 26 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:36:01 26 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:36:02 26 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:36:02 26 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:36:02 26 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:36:02 26 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:36:02 26 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:36:05 26 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0453lz 01:36:05 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0453lz.x00 01:36:05 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0453lz.x01 01:36:05 26 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0453lz.r in process_file_group 01:36:05 26 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260453.log 01:36:05 26 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:36:05 26 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0453dz 01:36:05 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0453dz.x00 01:36:05 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0453dz.x01 01:36:05 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0453dz.x02 01:36:05 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0453dz.x03 01:36:05 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0453dz.x04 01:36:05 26 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0453dz.r in process_file_group 01:36:06 26 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [453] 01:36:06 26 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [453] 01:36:06 26 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260453) for profiles 01:36:06 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:36:06 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/732) 726 730 731 to QC_BAD because CT out of water 01:36:06 26 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.038m) 01:36:06 26 Mar 2017 UTC: INFO: QC.py(365): Changed (11/732) 2 231 232 237 330 331 727:731 to QC_PROBABLY_BAD because raw temperature spikes 01:36:06 26 Mar 2017 UTC: INFO: QC.py(377): Changed (2/732) 730 732 to QC_BAD because raw salinity below bound 01:36:06 26 Mar 2017 UTC: INFO: QC.py(388): Changed (1/732) 732 to QC_BAD because bad raw salinity indicates raw conductivity issues 01:36:06 26 Mar 2017 UTC: INFO: QC.py(408): Changed (7/732) 230:232 237 330 331 728 to QC_PROBABLY_BAD because raw conductivity spikes 01:36:06 26 Mar 2017 UTC: INFO: QC.py(180): Changed (10/732) 2 231 232 237 330 331 727:729 731 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:36:06 26 Mar 2017 UTC: INFO: QC.py(180): Changed (1/732) 230 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 01:36:06 26 Mar 2017 UTC: INFO: QC.py(180): Changed (2/732) 726 731 to QC_BAD because changed raw cond implies changed raw salinity 01:36:06 26 Mar 2017 UTC: INFO: QC.py(365): Changed (11/732) 2 231 232 237 330 331 727:731 to QC_INTERPOLATED because temperature spikes 01:36:06 26 Mar 2017 UTC: INFO: QC.py(377): Changed (2/732) 730 732 to QC_BAD because salinity below bound 01:36:06 26 Mar 2017 UTC: INFO: QC.py(388): Changed (1/732) 732 to QC_BAD because bad salinity indicates conductivity issues 01:36:06 26 Mar 2017 UTC: INFO: QC.py(408): Changed (7/732) 230:232 237 330 331 728 to QC_INTERPOLATED because conductivity spikes 01:36:06 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/732) 287:291 to QC_BAD because slow apogee CT flow 01:36:06 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/732) 1:6 to QC_BAD because prior to dive start 01:36:06 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (4/732) 725 727:729 to QC_BAD because end of climb 01:36:06 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (19/732) 1:6 287:291 725:732 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:36:06 26 Mar 2017 UTC: INFO: QC.py(180): Changed (19/732) 1:6 287:291 725:732 to QC_BAD because changed corrected salin implies changed speed 01:36:07 26 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:36:07 26 Mar 2017 UTC: INFO: QC.py(180): Changed (5/732) 231 232 237 330 331 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 01:36:07 26 Mar 2017 UTC: INFO: QC.py(180): Changed (1/732) 230 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 01:36:07 26 Mar 2017 UTC: INFO: QC.py(180): Changed (5/732) 231 232 237 330 331 to QC_INTERPOLATED because changed corrected temp implies changed speed 01:36:07 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.29 cm/s 01:36:07 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.11 cm/s 01:36:07 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:36:07 26 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (209/732) 159 160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:36:07 26 Mar 2017 UTC: INFO: QC.py(180): Changed (8/732) 2 231 331 727:731 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 01:36:07 26 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (209/732) 159 160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 01:36:07 26 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/732) 731 to QC_BAD because bad aa4330 oyxgen 01:36:07 26 Mar 2017 UTC: INFO: QC.py(180): Changed (7/732) 2 231 331 727:730 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 01:36:07 26 Mar 2017 UTC: INFO: QC.py(180): Changed (18/732) 1:6 287:291 725:730 732 to QC_BAD because changed salinity implies changed optode oxygen 01:36:07 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:36:07 26 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:36:07 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:36:07 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 453: Data set size for profile, binned and kkyy files reduced by 19 points, a 2.60% reduction 01:36:07 26 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.453 01:36:07 26 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:36:07 26 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:36:07 26 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:36:08 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:36:08 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 01:39:58 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 01:39:59 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 01:39:59 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 01:40:48 26 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:40:48 26 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:40:48 26 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:40:48 26 Mar 2017 UTC /home/sg626/p6260453.log /home/sg626/p6260453.eng /home/sg626/p6260453.asc /home/sg626/p6260453.pro /home/sg626/p6260453.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 01:40:48 26 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:40:48 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:40:48 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:40:48 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:40:48 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:40:48 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:40:48 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:40:48 26 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:40:48 26 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:40:48 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:40:48 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:40:48 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:40:48 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:40:48 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:40:48 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:40:48 26 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:40:48 26 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:40:48 26 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:40:48 26 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:40:48 26 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:40:48 26 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:40:48 26 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:40:48 26 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:40:48 26 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 01:40:48 26 Mar 2017 UTC 05:38:59 26 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 917 05:38:59 26 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:42:38 26 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 1204 05:42:38 26 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:42:38 26 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:42:38 26 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:42:38 26 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:42:38 26 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170325194237 ] 05:42:38 26 Mar 2017 UTC: INFO: Base.py(1333): PID:1211 05:42:38 26 Mar 2017 UTC: INFO: Base.py(1375): Started processing 05:42:38 26 Mar 2017 UTC 05:42:38 26 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:42:39 26 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:42:39 26 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:42:39 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:42:39 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:454 calls_made:1 call_cycle:0 05:42:39 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:42:39 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:454 calls_made:1 call_cycle:0 05:42:39 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:42:39 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:454 calls_made:1 call_cycle:0 05:42:39 26 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:454 calls_made:1 call_cycle:0 2245.2210 -15800.7620 03/26/17 05:36:30 UTC) to sdrifter@soest.hawaii.edu 05:42:39 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:454 calls_made:1 call_cycle:0 05:42:39 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:42:39 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:454 calls_made:1 call_cycle:0 05:42:39 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:42:39 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:454 calls_made:1 call_cycle:0 05:42:39 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:42:39 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:454 calls_made:1 call_cycle:0 05:42:39 26 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:42:39 26 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:42:46 26 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:42:47 26 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:42:47 26 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:42:47 26 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:42:47 26 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:42:47 26 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:42:51 26 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0454lz 05:42:51 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0454lz.x00 05:42:51 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0454lz.x01 05:42:51 26 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0454lz.r in process_file_group 05:42:51 26 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260454.log 05:42:51 26 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:42:51 26 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0454dz 05:42:51 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0454dz.x00 05:42:51 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0454dz.x01 05:42:51 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0454dz.x02 05:42:51 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0454dz.x03 05:42:51 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0454dz.x04 05:42:51 26 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0454dz.r in process_file_group 05:42:51 26 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [454] 05:42:51 26 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [454] 05:42:51 26 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260454) for profiles 05:42:51 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:42:52 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (5/737) 733:737 to QC_BAD because CT out of water 05:42:52 26 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.101m) 05:42:52 26 Mar 2017 UTC: INFO: QC.py(365): Changed (11/737) 234 235 278 288 308 335 336 732:734 736 to QC_PROBABLY_BAD because raw temperature spikes 05:42:52 26 Mar 2017 UTC: INFO: QC.py(377): Changed (2/737) 735 736 to QC_BAD because raw salinity below bound 05:42:52 26 Mar 2017 UTC: INFO: QC.py(408): Changed (3/737) 234 235 278 to QC_PROBABLY_BAD because raw conductivity spikes 05:42:52 26 Mar 2017 UTC: INFO: QC.py(180): Changed (10/737) 234 235 278 288 308 335 336 732:734 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:42:52 26 Mar 2017 UTC: INFO: QC.py(180): Changed (3/737) 733 734 737 to QC_BAD because changed raw cond implies changed raw salinity 05:42:52 26 Mar 2017 UTC: INFO: QC.py(365): Changed (11/737) 234 235 278 288 308 335 336 732:734 736 to QC_INTERPOLATED because temperature spikes 05:42:52 26 Mar 2017 UTC: INFO: QC.py(377): Changed (2/737) 735 736 to QC_BAD because salinity below bound 05:42:52 26 Mar 2017 UTC: INFO: QC.py(408): Changed (3/737) 234 235 278 to QC_INTERPOLATED because conductivity spikes 05:42:52 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/737) 289:293 to QC_BAD because slow apogee CT flow 05:42:52 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/737) 1:6 to QC_BAD because prior to dive start 05:42:52 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/737) 732 to QC_BAD because end of climb 05:42:52 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (17/737) 1:6 289:293 732:737 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:42:52 26 Mar 2017 UTC: INFO: QC.py(180): Changed (17/737) 1:6 289:293 732:737 to QC_BAD because changed corrected salin implies changed speed 05:42:52 26 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:42:52 26 Mar 2017 UTC: INFO: QC.py(180): Changed (7/737) 234 235 278 288 308 335 336 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 05:42:52 26 Mar 2017 UTC: INFO: QC.py(180): Changed (7/737) 234 235 278 288 308 335 336 to QC_INTERPOLATED because changed corrected temp implies changed speed 05:42:52 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.38 cm/s 05:42:52 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.98 cm/s 05:42:52 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:42:52 26 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (208/737) 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:42:52 26 Mar 2017 UTC: INFO: QC.py(180): Changed (5/737) 336 732:734 736 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:42:52 26 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (208/737) 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:42:52 26 Mar 2017 UTC: INFO: QC.py(180): Changed (5/737) 336 732:734 736 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:42:52 26 Mar 2017 UTC: INFO: QC.py(180): Changed (17/737) 1:6 289:293 732:737 to QC_BAD because changed salinity implies changed optode oxygen 05:42:52 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:42:52 26 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:42:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 05:42:53 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 454: Data set size for profile, binned and kkyy files reduced by 17 points, a 2.31% reduction 05:42:53 26 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.454 05:42:53 26 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:42:53 26 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:42:53 26 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:42:53 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 05:42:53 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 05:46:42 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 05:46:44 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 05:46:44 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 05:47:32 26 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:47:32 26 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:47:32 26 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:47:32 26 Mar 2017 UTC /home/sg626/p6260454.log /home/sg626/p6260454.eng /home/sg626/p6260454.asc /home/sg626/p6260454.pro /home/sg626/p6260454.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 05:47:32 26 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:47:32 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:47:32 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:47:32 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:47:32 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:47:32 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:47:32 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:47:32 26 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:47:32 26 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:47:32 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:47:32 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:47:32 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:47:32 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:47:32 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:47:32 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:47:32 26 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:47:32 26 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:47:32 26 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:47:32 26 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:47:32 26 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:47:32 26 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:47:32 26 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:47:32 26 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:47:32 26 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 05:47:32 26 Mar 2017 UTC 09:44:52 26 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 11657 09:44:52 26 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:48:04 26 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 11840 09:48:04 26 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:48:04 26 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:48:04 26 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:48:04 26 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:48:04 26 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170325234803 ] 09:48:04 26 Mar 2017 UTC: INFO: Base.py(1333): PID:11848 09:48:04 26 Mar 2017 UTC: INFO: Base.py(1375): Started processing 09:48:04 26 Mar 2017 UTC 09:48:04 26 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:48:05 26 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:48:05 26 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:48:05 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:48:05 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:455 calls_made:2 call_cycle:0 09:48:05 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:48:05 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:455 calls_made:2 call_cycle:0 09:48:05 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:48:05 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:455 calls_made:2 call_cycle:0 09:48:05 26 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:455 calls_made:2 call_cycle:0 2246.1080 -15800.8950 03/26/17 09:39:31 UTC) to sdrifter@soest.hawaii.edu 09:48:06 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:455 calls_made:2 call_cycle:0 09:48:06 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:48:06 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:455 calls_made:2 call_cycle:0 09:48:06 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:48:06 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:455 calls_made:2 call_cycle:0 09:48:06 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:48:06 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:455 calls_made:2 call_cycle:0 09:48:06 26 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:48:06 26 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:48:13 26 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:48:14 26 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:48:14 26 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:48:14 26 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:48:14 26 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:48:14 26 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:48:17 26 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0455lz 09:48:17 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0455lz.x00 09:48:17 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0455lz.x01 09:48:17 26 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0455lz.r in process_file_group 09:48:17 26 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260455.log 09:48:17 26 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:48:17 26 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0455dz 09:48:17 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0455dz.x00 09:48:17 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0455dz.x01 09:48:17 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0455dz.x02 09:48:17 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0455dz.x03 09:48:17 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0455dz.x04 09:48:17 26 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0455dz.r in process_file_group 09:48:18 26 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [455] 09:48:18 26 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [455] 09:48:18 26 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260455) for profiles 09:48:18 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 09:48:18 26 Mar 2017 UTC: INFO: QC.py(365): Changed (4/723) 3 292 721 722 to QC_PROBABLY_BAD because raw temperature spikes 09:48:18 26 Mar 2017 UTC: INFO: QC.py(377): Changed (1/723) 723 to QC_BAD because raw salinity below bound 09:48:18 26 Mar 2017 UTC: INFO: QC.py(388): Changed (1/723) 723 to QC_BAD because bad raw salinity indicates raw conductivity issues 09:48:18 26 Mar 2017 UTC: INFO: QC.py(180): Changed (4/723) 3 292 721 722 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 09:48:18 26 Mar 2017 UTC: INFO: QC.py(365): Changed (4/723) 3 292 721 722 to QC_INTERPOLATED because temperature spikes 09:48:18 26 Mar 2017 UTC: INFO: QC.py(377): Changed (1/723) 723 to QC_BAD because salinity below bound 09:48:18 26 Mar 2017 UTC: INFO: QC.py(388): Changed (1/723) 723 to QC_BAD because bad salinity indicates conductivity issues 09:48:18 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/723) 290:294 to QC_BAD because slow apogee CT flow 09:48:18 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/723) 1:6 to QC_BAD because prior to dive start 09:48:18 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (3/723) 720:722 to QC_BAD because end of climb 09:48:18 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/723) 1:6 290:294 720:723 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:48:18 26 Mar 2017 UTC: INFO: QC.py(180): Changed (15/723) 1:6 290:294 720:723 to QC_BAD because changed corrected salin implies changed speed 09:48:19 26 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:48:19 26 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 455 interp_salinity data_points in_between 689 696 % suspect thermal-inertia points 691 09:48:19 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.56 cm/s 09:48:19 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.03 cm/s 09:48:19 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:48:19 26 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (210/723) 164 165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:48:19 26 Mar 2017 UTC: INFO: QC.py(180): Changed (3/723) 3 721 722 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:48:19 26 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (210/723) 164 165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 09:48:19 26 Mar 2017 UTC: INFO: QC.py(180): Changed (3/723) 3 721 722 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:48:19 26 Mar 2017 UTC: INFO: QC.py(180): Changed (15/723) 1:6 290:294 720:723 to QC_BAD because changed salinity implies changed optode oxygen 09:48:19 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:48:19 26 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:48:19 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 09:48:19 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 455: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.07% reduction 09:48:20 26 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.455 09:48:20 26 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:48:20 26 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:48:20 26 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:48:20 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 09:48:20 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 09:52:11 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 09:52:12 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 09:52:12 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 09:53:00 26 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:53:00 26 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:53:00 26 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:53:00 26 Mar 2017 UTC /home/sg626/p6260455.log /home/sg626/p6260455.eng /home/sg626/p6260455.asc /home/sg626/p6260455.pro /home/sg626/p6260455.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 09:53:00 26 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:53:00 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:53:00 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:53:00 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:53:00 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:53:00 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:53:00 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:53:00 26 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:53:00 26 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:53:00 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:53:00 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:53:00 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:53:00 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:53:00 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:53:00 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:53:00 26 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:53:00 26 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:53:00 26 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:53:00 26 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:53:00 26 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:53:00 26 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:53:00 26 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:53:00 26 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:53:00 26 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 09:53:00 26 Mar 2017 UTC 13:52:39 26 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 18713 13:52:39 26 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:57:13 26 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 18867 13:57:13 26 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:57:13 26 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:57:13 26 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:57:13 26 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:57:13 26 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170326035712 ] 13:57:13 26 Mar 2017 UTC: INFO: Base.py(1333): PID:18874 13:57:13 26 Mar 2017 UTC: INFO: Base.py(1375): Started processing 13:57:13 26 Mar 2017 UTC 13:57:13 26 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:57:14 26 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:57:14 26 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:57:14 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:57:14 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:456 calls_made:1 call_cycle:0 13:57:14 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:57:14 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:456 calls_made:1 call_cycle:0 13:57:14 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:57:14 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:456 calls_made:1 call_cycle:0 13:57:14 26 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:456 calls_made:1 call_cycle:0 2247.0850 -15800.7450 03/26/17 13:50:00 UTC) to sdrifter@soest.hawaii.edu 13:57:14 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:456 calls_made:1 call_cycle:0 13:57:14 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:57:14 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:456 calls_made:1 call_cycle:0 13:57:14 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:57:14 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:456 calls_made:1 call_cycle:0 13:57:14 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:57:14 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:456 calls_made:1 call_cycle:0 13:57:14 26 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:57:14 26 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:57:21 26 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:57:22 26 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:57:22 26 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:57:22 26 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:57:22 26 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:57:22 26 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:57:26 26 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0456lz 13:57:26 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0456lz.x00 13:57:26 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0456lz.x01 13:57:26 26 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0456lz.r in process_file_group 13:57:26 26 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260456.log 13:57:26 26 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:57:26 26 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0456dz 13:57:26 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0456dz.x00 13:57:26 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0456dz.x01 13:57:26 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0456dz.x02 13:57:26 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0456dz.x03 13:57:26 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0456dz.x04 13:57:26 26 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0456dz.r in process_file_group 13:57:26 26 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [456] 13:57:26 26 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [456] 13:57:26 26 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260456) for profiles 13:57:26 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:57:26 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/741) 739:741 to QC_BAD because CT out of water 13:57:26 26 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.060m) 13:57:26 26 Mar 2017 UTC: INFO: QC.py(365): Changed (6/741) 3 233 291 295 340 739 to QC_PROBABLY_BAD because raw temperature spikes 13:57:26 26 Mar 2017 UTC: INFO: QC.py(377): Changed (2/741) 740 741 to QC_BAD because raw salinity below bound 13:57:26 26 Mar 2017 UTC: INFO: QC.py(408): Changed (5/741) 233 286 291 295 340 to QC_PROBABLY_BAD because raw conductivity spikes 13:57:26 26 Mar 2017 UTC: INFO: QC.py(180): Changed (6/741) 3 233 291 295 340 739 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:57:26 26 Mar 2017 UTC: INFO: QC.py(180): Changed (1/741) 286 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 13:57:26 26 Mar 2017 UTC: INFO: QC.py(180): Changed (1/741) 739 to QC_BAD because changed raw cond implies changed raw salinity 13:57:26 26 Mar 2017 UTC: INFO: QC.py(365): Changed (6/741) 3 233 291 295 340 739 to QC_INTERPOLATED because temperature spikes 13:57:26 26 Mar 2017 UTC: INFO: QC.py(377): Changed (2/741) 740 741 to QC_BAD because salinity below bound 13:57:27 26 Mar 2017 UTC: INFO: QC.py(408): Changed (5/741) 233 286 291 295 340 to QC_INTERPOLATED because conductivity spikes 13:57:27 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/741) 289:293 to QC_BAD because slow apogee CT flow 13:57:27 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/741) 1:6 to QC_BAD because prior to dive start 13:57:27 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/741) 737 738 to QC_BAD because end of climb 13:57:27 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/741) 1:6 289:293 737:741 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:57:27 26 Mar 2017 UTC: INFO: QC.py(180): Changed (16/741) 1:6 289:293 737:741 to QC_BAD because changed corrected salin implies changed speed 13:57:27 26 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:57:27 26 Mar 2017 UTC: INFO: QC.py(180): Changed (3/741) 233 295 340 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 13:57:27 26 Mar 2017 UTC: INFO: QC.py(180): Changed (1/741) 286 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 13:57:27 26 Mar 2017 UTC: INFO: QC.py(180): Changed (3/741) 233 295 340 to QC_INTERPOLATED because changed corrected temp implies changed speed 13:57:27 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.32 cm/s 13:57:27 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.09 cm/s 13:57:27 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:57:27 26 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (212/741) 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:57:27 26 Mar 2017 UTC: INFO: QC.py(180): Changed (3/741) 3 291 739 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:57:27 26 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (212/741) 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:57:27 26 Mar 2017 UTC: INFO: QC.py(180): Changed (3/741) 3 291 739 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:57:27 26 Mar 2017 UTC: INFO: QC.py(180): Changed (16/741) 1:6 289:293 737:741 to QC_BAD because changed salinity implies changed optode oxygen 13:57:27 26 Mar 2017 UTC: INFO: QC.py(180): Changed (1/741) 286 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 13:57:27 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:57:27 26 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:57:27 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:57:28 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 456: Data set size for profile, binned and kkyy files reduced by 16 points, a 2.16% reduction 13:57:28 26 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.456 13:57:28 26 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:57:28 26 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:57:28 26 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:57:28 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:57:28 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 14:01:17 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 14:01:19 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 14:01:19 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 14:02:08 26 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:02:08 26 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:02:08 26 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:02:08 26 Mar 2017 UTC /home/sg626/p6260456.log /home/sg626/p6260456.eng /home/sg626/p6260456.asc /home/sg626/p6260456.pro /home/sg626/p6260456.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 14:02:08 26 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:02:08 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:02:08 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:02:08 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:02:08 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:02:08 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:02:08 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:02:08 26 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:02:08 26 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:02:08 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:02:08 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:02:08 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:02:08 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:02:08 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:02:08 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:02:08 26 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:02:08 26 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:02:08 26 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:02:08 26 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:02:08 26 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:02:08 26 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:02:08 26 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:02:08 26 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:02:08 26 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 14:02:08 26 Mar 2017 UTC 18:02:38 26 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 25464 18:02:38 26 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 18:05:46 26 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 25592 18:05:46 26 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:05:46 26 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 18:05:46 26 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 18:05:46 26 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:05:46 26 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170326080545 ] 18:05:46 26 Mar 2017 UTC: INFO: Base.py(1333): PID:25599 18:05:46 26 Mar 2017 UTC: INFO: Base.py(1375): Started processing 18:05:46 26 Mar 2017 UTC 18:05:46 26 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 18:05:47 26 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 18:05:47 26 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:05:47 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:05:47 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:457 calls_made:1 call_cycle:0 18:05:47 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:05:47 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:457 calls_made:1 call_cycle:0 18:05:47 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:05:47 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:457 calls_made:1 call_cycle:0 18:05:47 26 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:457 calls_made:1 call_cycle:0 2248.1510 -15800.5500 03/26/17 18:00:18 UTC) to sdrifter@soest.hawaii.edu 18:05:47 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:457 calls_made:1 call_cycle:0 18:05:47 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:05:47 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:457 calls_made:1 call_cycle:0 18:05:47 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:05:47 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:457 calls_made:1 call_cycle:0 18:05:47 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:05:47 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:457 calls_made:1 call_cycle:0 18:05:47 26 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:05:47 26 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:05:54 26 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:05:56 26 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:05:56 26 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 18:05:56 26 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:05:56 26 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:05:56 26 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 18:05:59 26 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0457lz 18:05:59 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0457lz.x00 18:05:59 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0457lz.x01 18:05:59 26 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0457lz.r in process_file_group 18:05:59 26 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260457.log 18:05:59 26 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 18:05:59 26 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0457dz 18:05:59 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0457dz.x00 18:05:59 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0457dz.x01 18:05:59 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0457dz.x02 18:05:59 26 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0457dz.r in process_file_group 18:05:59 26 Mar 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0457dz.r - expected 0x1575353593, generated 0x40f166f4 18:05:59 26 Mar 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0457dz.r - expected 0xc7f3b7fc, generated 0xa9bb 18:05:59 26 Mar 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0457dz.r - skipping 18:05:59 26 Mar 2017 UTC: ERROR: Base.py(272): Could not process sg0457dz - skipping 18:05:59 26 Mar 2017 UTC: WARNING: Base.py(1624): No dives to process 18:05:59 26 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [457] 18:05:59 26 Mar 2017 UTC: INFO: Base.py(1780): No dives found to profile 18:05:59 26 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.457 18:05:59 26 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:05:59 26 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:05:59 26 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:05:59 26 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:05:59 26 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:05:59 26 Mar 2017 UTC: ERROR: Base.py(1960): Dive [457] failed to process completely. The following files were not processed completely: /home/sg626/sg0457dz.r Glider logout not seen - retransmissions from glider possible Consult baselog_170326080545 for details. 18:05:59 26 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:05:59 26 Mar 2017 UTC /home/sg626/p6260457.log 18:05:59 26 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:05:59 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:05:59 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:05:59 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:05:59 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:05:59 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:05:59 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:05:59 26 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:05:59 26 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:05:59 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:05:59 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:05:59 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:05:59 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:05:59 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:05:59 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:06:00 26 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:06:00 26 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 18:06:00 26 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 18:06:00 26 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 18:06:00 26 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 18:06:00 26 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:06:00 26 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:06:00 26 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:06:00 26 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 18:06:00 26 Mar 2017 UTC 18:10:25 26 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 25960 18:10:25 26 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 18:12:17 26 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 26062 18:12:17 26 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:12:17 26 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 18:12:17 26 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 18:12:17 26 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:12:17 26 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170326081217 ] 18:12:17 26 Mar 2017 UTC: INFO: Base.py(1333): PID:26069 18:12:18 26 Mar 2017 UTC: INFO: Base.py(1375): Started processing 18:12:18 26 Mar 2017 UTC 18:12:18 26 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 18:12:19 26 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 18:12:19 26 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:12:19 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:12:19 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:457 calls_made:3 call_cycle:0 18:12:19 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:12:19 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:457 calls_made:3 call_cycle:0 18:12:19 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:12:19 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:457 calls_made:3 call_cycle:0 18:12:19 26 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:457 calls_made:3 call_cycle:0 2248.1510 -15800.5500 03/26/17 18:00:18 UTC) to sdrifter@soest.hawaii.edu 18:12:19 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:457 calls_made:3 call_cycle:0 18:12:19 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:12:19 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:457 calls_made:3 call_cycle:0 18:12:19 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:12:19 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:457 calls_made:3 call_cycle:0 18:12:19 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:12:19 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:457 calls_made:3 call_cycle:0 18:12:19 26 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:12:19 26 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:12:26 26 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:12:28 26 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:12:28 26 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 18:12:28 26 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:12:28 26 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:12:28 26 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 18:12:31 26 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 18:12:31 26 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0457dz 18:12:31 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0457dz.x00 18:12:31 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0457dz.x01 18:12:31 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0457dz.x02 18:12:31 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0457dz.x03 18:12:31 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0457dz.x04 18:12:31 26 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0457dz.r in process_file_group 18:12:32 26 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [457] 18:12:32 26 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [457] 18:12:32 26 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260457) for profiles 18:12:32 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 18:12:32 26 Mar 2017 UTC: INFO: QC.py(365): Changed (8/756) 253 255 313 319 320 751 753 755 to QC_PROBABLY_BAD because raw temperature spikes 18:12:32 26 Mar 2017 UTC: INFO: QC.py(377): Changed (2/756) 751 755 to QC_BAD because raw salinity below bound 18:12:32 26 Mar 2017 UTC: INFO: QC.py(408): Changed (6/756) 253 255 319 751 753 755 to QC_PROBABLY_BAD because raw conductivity spikes 18:12:32 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (5/756) 752:756 to QC_BAD because uncorrectable 0.3m raw conductivity bubble on climb 18:12:32 26 Mar 2017 UTC: INFO: QC.py(180): Changed (6/756) 253 255 313 319 320 753 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 18:12:32 26 Mar 2017 UTC: INFO: QC.py(180): Changed (4/756) 752:754 756 to QC_BAD because changed raw cond implies changed raw salinity 18:12:32 26 Mar 2017 UTC: INFO: QC.py(365): Changed (8/756) 253 255 313 319 320 751 753 755 to QC_INTERPOLATED because temperature spikes 18:12:32 26 Mar 2017 UTC: INFO: QC.py(377): Changed (2/756) 751 755 to QC_BAD because salinity below bound 18:12:32 26 Mar 2017 UTC: INFO: QC.py(388): Changed (2/756) 751 755 to QC_BAD because bad salinity indicates conductivity issues 18:12:32 26 Mar 2017 UTC: INFO: QC.py(408): Changed (6/756) 253 255 319 752:754 to QC_INTERPOLATED because conductivity spikes 18:12:32 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (4/756) 752:754 756 to QC_BAD because uncorrectable 0.3m conductivity bubble on climb 18:12:32 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/756) 288:292 to QC_BAD because slow apogee CT flow 18:12:32 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/756) 1:6 to QC_BAD because prior to dive start 18:12:32 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (17/756) 1:6 288:292 751:756 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 18:12:32 26 Mar 2017 UTC: INFO: QC.py(180): Changed (17/756) 1:6 288:292 751:756 to QC_BAD because changed corrected salin implies changed speed 18:12:33 26 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 18:12:33 26 Mar 2017 UTC: INFO: QC.py(180): Changed (5/756) 253 255 313 319 320 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 18:12:33 26 Mar 2017 UTC: INFO: QC.py(180): Changed (5/756) 253 255 313 319 320 to QC_INTERPOLATED because changed corrected temp implies changed speed 18:12:33 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 27.80 cm/s 18:12:33 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.03 cm/s 18:12:33 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 18:12:33 26 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (208/756) 159 160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 18:12:33 26 Mar 2017 UTC: INFO: QC.py(180): Changed (3/756) 751 753 755 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 18:12:33 26 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (208/756) 159 160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 18:12:33 26 Mar 2017 UTC: INFO: QC.py(180): Changed (3/756) 751 753 755 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 18:12:33 26 Mar 2017 UTC: INFO: QC.py(180): Changed (17/756) 1:6 288:292 751:756 to QC_BAD because changed salinity implies changed optode oxygen 18:12:33 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 18:12:33 26 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 18:12:33 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 18:12:33 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 457: Data set size for profile, binned and kkyy files reduced by 17 points, a 2.25% reduction 18:12:33 26 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.457 18:12:33 26 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:12:33 26 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:12:33 26 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:12:33 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 18:12:33 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 18:16:26 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 18:16:27 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 18:16:27 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 18:17:16 26 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:17:16 26 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:17:16 26 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:17:16 26 Mar 2017 UTC /home/sg626/p6260457.eng /home/sg626/p6260457.asc /home/sg626/p6260457.pro /home/sg626/p6260457.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 18:17:16 26 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:17:16 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:17:16 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:17:16 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:17:16 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:17:16 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:17:16 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:17:16 26 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:17:16 26 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:17:16 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:17:16 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:17:16 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:17:16 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:17:16 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:17:16 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:17:16 26 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:17:16 26 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 18:17:16 26 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 18:17:16 26 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 18:17:16 26 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 18:17:16 26 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:17:16 26 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:17:16 26 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:17:16 26 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 18:17:16 26 Mar 2017 UTC 22:12:28 26 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 32344 22:12:28 26 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:15:37 26 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 32474 22:15:37 26 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:15:37 26 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:15:37 26 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:15:37 26 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:15:37 26 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170326121536 ] 22:15:37 26 Mar 2017 UTC: INFO: Base.py(1333): PID:32481 22:15:37 26 Mar 2017 UTC: INFO: Base.py(1375): Started processing 22:15:37 26 Mar 2017 UTC 22:15:37 26 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:15:38 26 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:15:38 26 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:15:38 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:15:38 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:458 calls_made:1 call_cycle:0 22:15:38 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:15:38 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:458 calls_made:1 call_cycle:0 22:15:38 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:15:38 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:458 calls_made:1 call_cycle:0 22:15:38 26 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:458 calls_made:1 call_cycle:0 2248.7780 -15800.8710 03/26/17 22:10:08 UTC) to sdrifter@soest.hawaii.edu 22:15:39 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:458 calls_made:1 call_cycle:0 22:15:39 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:15:39 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:458 calls_made:1 call_cycle:0 22:15:39 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:15:39 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:458 calls_made:1 call_cycle:0 22:15:39 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:15:39 26 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:458 calls_made:1 call_cycle:0 22:15:39 26 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:15:39 26 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:15:46 26 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:15:47 26 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:15:47 26 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:15:47 26 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:15:47 26 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:15:47 26 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:15:50 26 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0458lz 22:15:50 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0458lz.x00 22:15:50 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0458lz.x01 22:15:50 26 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0458lz.r in process_file_group 22:15:50 26 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260458.log 22:15:50 26 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 22:15:50 26 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0458dz 22:15:50 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0458dz.x00 22:15:50 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0458dz.x01 22:15:50 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0458dz.x02 22:15:50 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0458dz.x03 22:15:50 26 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0458dz.x04 22:15:50 26 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0458dz.r in process_file_group 22:15:51 26 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [458] 22:15:51 26 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [458] 22:15:51 26 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260458) for profiles 22:15:51 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 22:15:51 26 Mar 2017 UTC: INFO: QC.py(365): Changed (5/711) 238 241 285 301 317 to QC_PROBABLY_BAD because raw temperature spikes 22:15:51 26 Mar 2017 UTC: INFO: QC.py(408): Changed (5/711) 238 241 285 301 317 to QC_PROBABLY_BAD because raw conductivity spikes 22:15:51 26 Mar 2017 UTC: INFO: QC.py(180): Changed (5/711) 238 241 285 301 317 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 22:15:51 26 Mar 2017 UTC: INFO: QC.py(365): Changed (5/711) 238 241 285 301 317 to QC_INTERPOLATED because temperature spikes 22:15:51 26 Mar 2017 UTC: INFO: QC.py(408): Changed (5/711) 238 241 285 301 317 to QC_INTERPOLATED because conductivity spikes 22:15:51 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/711) 283:287 to QC_BAD because slow apogee CT flow 22:15:51 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/711) 1:6 to QC_BAD because prior to dive start 22:15:51 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/711) 1:6 283:287 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:15:51 26 Mar 2017 UTC: INFO: QC.py(180): Changed (11/711) 1:6 283:287 to QC_BAD because changed corrected salin implies changed speed 22:15:52 26 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:15:52 26 Mar 2017 UTC: INFO: QC.py(180): Changed (4/711) 238 241 301 317 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 22:15:52 26 Mar 2017 UTC: INFO: QC.py(180): Changed (4/711) 238 241 301 317 to QC_INTERPOLATED because changed corrected temp implies changed speed 22:15:52 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.85 cm/s 22:15:52 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.34 cm/s 22:15:52 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:15:52 26 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (212/711) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:15:52 26 Mar 2017 UTC: INFO: QC.py(180): Changed (2/711) 241 301 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 22:15:52 26 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (212/711) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 22:15:52 26 Mar 2017 UTC: INFO: QC.py(180): Changed (2/711) 241 301 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 22:15:52 26 Mar 2017 UTC: INFO: QC.py(180): Changed (11/711) 1:6 283:287 to QC_BAD because changed salinity implies changed optode oxygen 22:15:52 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:15:52 26 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 22:15:52 26 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 22:15:52 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 458: Data set size for profile, binned and kkyy files reduced by 11 points, a 1.55% reduction 22:15:52 26 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.458 22:15:52 26 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:15:52 26 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:15:52 26 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:15:53 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 22:15:53 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 22:19:46 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 22:19:47 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 22:19:47 26 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 22:20:37 26 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:20:37 26 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:20:37 26 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:20:37 26 Mar 2017 UTC /home/sg626/p6260458.log /home/sg626/p6260458.eng /home/sg626/p6260458.asc /home/sg626/p6260458.pro /home/sg626/p6260458.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 22:20:37 26 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:20:37 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:20:37 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:20:37 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:20:37 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:20:37 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:20:37 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:20:37 26 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:20:37 26 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:20:37 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:20:37 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:20:37 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:20:37 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:20:37 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:20:37 26 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:20:37 26 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:20:37 26 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:20:37 26 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:20:37 26 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:20:37 26 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:20:37 26 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:20:37 26 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:20:37 26 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:20:37 26 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 22:20:37 26 Mar 2017 UTC 02:14:41 27 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 6288 02:14:41 27 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:18:06 27 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 6412 02:18:06 27 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:18:06 27 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:18:06 27 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:18:06 27 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:18:06 27 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170326161805 ] 02:18:06 27 Mar 2017 UTC: INFO: Base.py(1333): PID:6419 02:18:06 27 Mar 2017 UTC: INFO: Base.py(1375): Started processing 02:18:06 27 Mar 2017 UTC 02:18:06 27 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:18:07 27 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:18:07 27 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:18:07 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:18:07 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:459 calls_made:1 call_cycle:0 02:18:07 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:18:07 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:459 calls_made:1 call_cycle:0 02:18:07 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:18:07 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:459 calls_made:1 call_cycle:0 02:18:07 27 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:459 calls_made:1 call_cycle:0 2249.4660 -15801.1000 03/27/17 02:12:24 UTC) to sdrifter@soest.hawaii.edu 02:18:07 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:459 calls_made:1 call_cycle:0 02:18:07 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:18:07 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:459 calls_made:1 call_cycle:0 02:18:07 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:18:07 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:459 calls_made:1 call_cycle:0 02:18:07 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:18:07 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:459 calls_made:1 call_cycle:0 02:18:07 27 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:18:07 27 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:18:14 27 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:18:15 27 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:18:15 27 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:18:15 27 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:18:16 27 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:18:16 27 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:18:19 27 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0459lz 02:18:19 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0459lz.x00 02:18:19 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0459lz.x01 02:18:19 27 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0459lz.r in process_file_group 02:18:19 27 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260459.log 02:18:19 27 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 02:18:19 27 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0459dz 02:18:19 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0459dz.x00 02:18:19 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0459dz.x01 02:18:19 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0459dz.x02 02:18:19 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0459dz.x03 02:18:19 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0459dz.x04 02:18:19 27 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0459dz.r in process_file_group 02:18:19 27 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [459] 02:18:19 27 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [459] 02:18:19 27 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260459) for profiles 02:18:19 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 02:18:20 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/705) 704 705 to QC_BAD because CT out of water 02:18:20 27 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.066m) 02:18:20 27 Mar 2017 UTC: INFO: QC.py(365): Changed (9/705) 2 4 248 264:266 272 292 318 to QC_PROBABLY_BAD because raw temperature spikes 02:18:20 27 Mar 2017 UTC: INFO: QC.py(377): Changed (1/705) 704 to QC_BAD because raw salinity below bound 02:18:20 27 Mar 2017 UTC: INFO: QC.py(408): Changed (4/705) 248 266 292 307 to QC_PROBABLY_BAD because raw conductivity spikes 02:18:20 27 Mar 2017 UTC: INFO: QC.py(180): Changed (9/705) 2 4 248 264:266 272 292 318 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:18:20 27 Mar 2017 UTC: INFO: QC.py(180): Changed (1/705) 307 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 02:18:20 27 Mar 2017 UTC: INFO: QC.py(180): Changed (1/705) 705 to QC_BAD because changed raw cond implies changed raw salinity 02:18:20 27 Mar 2017 UTC: INFO: QC.py(365): Changed (9/705) 2 4 248 264:266 272 292 318 to QC_INTERPOLATED because temperature spikes 02:18:20 27 Mar 2017 UTC: INFO: QC.py(377): Changed (1/705) 704 to QC_BAD because salinity below bound 02:18:20 27 Mar 2017 UTC: INFO: QC.py(408): Changed (4/705) 248 266 292 307 to QC_INTERPOLATED because conductivity spikes 02:18:20 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/705) 286:290 to QC_BAD because slow apogee CT flow 02:18:20 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/705) 1:6 to QC_BAD because prior to dive start 02:18:20 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/705) 1:6 286:290 704 705 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:18:20 27 Mar 2017 UTC: INFO: QC.py(180): Changed (13/705) 1:6 286:290 704 705 to QC_BAD because changed corrected salin implies changed speed 02:18:20 27 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:18:20 27 Mar 2017 UTC: INFO: QC.py(180): Changed (7/705) 248 264:266 272 292 318 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 02:18:20 27 Mar 2017 UTC: INFO: QC.py(180): Changed (1/705) 307 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 02:18:20 27 Mar 2017 UTC: INFO: QC.py(180): Changed (7/705) 248 264:266 272 292 318 to QC_INTERPOLATED because changed corrected temp implies changed speed 02:18:20 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.14 cm/s 02:18:20 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.29 cm/s 02:18:20 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:18:20 27 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (213/705) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:18:20 27 Mar 2017 UTC: INFO: QC.py(180): Changed (3/705) 2 4 266 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:18:20 27 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (213/705) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 02:18:20 27 Mar 2017 UTC: INFO: QC.py(180): Changed (3/705) 2 4 266 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:18:20 27 Mar 2017 UTC: INFO: QC.py(180): Changed (13/705) 1:6 286:290 704 705 to QC_BAD because changed salinity implies changed optode oxygen 02:18:20 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:18:20 27 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:18:20 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 02:18:21 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 459: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.84% reduction 02:18:21 27 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.459 02:18:21 27 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:18:21 27 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:18:21 27 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:18:21 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 02:18:21 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 02:22:14 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 02:22:15 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 02:22:15 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 02:23:04 27 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:23:04 27 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:23:04 27 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:23:04 27 Mar 2017 UTC /home/sg626/p6260459.log /home/sg626/p6260459.eng /home/sg626/p6260459.asc /home/sg626/p6260459.pro /home/sg626/p6260459.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 02:23:04 27 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:23:04 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:23:04 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:23:04 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:23:04 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:23:04 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:23:04 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:23:04 27 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:23:04 27 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:23:04 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:23:04 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:23:04 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:23:04 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:23:04 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:23:04 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:23:04 27 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:23:04 27 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:23:04 27 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:23:04 27 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:23:04 27 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:23:04 27 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:23:04 27 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:23:04 27 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:23:04 27 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 02:23:04 27 Mar 2017 UTC 06:05:43 27 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 12570 06:05:43 27 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:09:03 27 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 12701 06:09:03 27 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:09:03 27 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 06:09:03 27 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 06:09:03 27 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:09:03 27 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170326200902 ] 06:09:03 27 Mar 2017 UTC: INFO: Base.py(1333): PID:12708 06:09:03 27 Mar 2017 UTC: INFO: Base.py(1375): Started processing 06:09:03 27 Mar 2017 UTC 06:09:03 27 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 06:09:04 27 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 06:09:04 27 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:09:04 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:09:04 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:460 calls_made:1 call_cycle:0 06:09:04 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:09:04 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:460 calls_made:1 call_cycle:0 06:09:04 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:09:04 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:460 calls_made:1 call_cycle:0 06:09:04 27 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:460 calls_made:1 call_cycle:0 2250.1580 -15801.0260 03/27/17 06:03:19 UTC) to sdrifter@soest.hawaii.edu 06:09:05 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:460 calls_made:1 call_cycle:0 06:09:05 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:09:05 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:460 calls_made:1 call_cycle:0 06:09:05 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:09:05 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:460 calls_made:1 call_cycle:0 06:09:05 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:09:05 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:460 calls_made:1 call_cycle:0 06:09:05 27 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:09:05 27 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:09:12 27 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:09:13 27 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:09:13 27 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 06:09:13 27 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:09:13 27 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:09:13 27 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 06:09:16 27 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0460lz 06:09:16 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0460lz.x00 06:09:16 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0460lz.x01 06:09:16 27 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0460lz.r in process_file_group 06:09:16 27 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260460.log 06:09:16 27 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 06:09:16 27 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0460dz 06:09:16 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0460dz.x00 06:09:16 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0460dz.x01 06:09:16 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0460dz.x02 06:09:16 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0460dz.x03 06:09:16 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0460dz.x04 06:09:16 27 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0460dz.r in process_file_group 06:09:17 27 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [460] 06:09:17 27 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [460] 06:09:17 27 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260460) for profiles 06:09:17 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 06:09:17 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/692) 690:692 to QC_BAD because CT out of water 06:09:17 27 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.045m) 06:09:17 27 Mar 2017 UTC: INFO: QC.py(365): Changed (12/692) 3 236 240 241 247 256 258 261 289 309 690 691 to QC_PROBABLY_BAD because raw temperature spikes 06:09:17 27 Mar 2017 UTC: INFO: QC.py(377): Changed (1/692) 690 to QC_BAD because raw salinity below bound 06:09:17 27 Mar 2017 UTC: INFO: QC.py(408): Changed (8/692) 4 236 240 241 247 258 289 309 to QC_PROBABLY_BAD because raw conductivity spikes 06:09:17 27 Mar 2017 UTC: INFO: QC.py(180): Changed (11/692) 3 236 240 241 247 256 258 261 289 309 691 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 06:09:17 27 Mar 2017 UTC: INFO: QC.py(180): Changed (1/692) 4 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 06:09:17 27 Mar 2017 UTC: INFO: QC.py(180): Changed (2/692) 691 692 to QC_BAD because changed raw cond implies changed raw salinity 06:09:17 27 Mar 2017 UTC: INFO: QC.py(365): Changed (12/692) 3 236 240 241 247 256 258 261 289 309 690 691 to QC_INTERPOLATED because temperature spikes 06:09:17 27 Mar 2017 UTC: INFO: QC.py(377): Changed (1/692) 690 to QC_BAD because salinity below bound 06:09:17 27 Mar 2017 UTC: INFO: QC.py(408): Changed (8/692) 4 236 240 241 247 258 289 309 to QC_INTERPOLATED because conductivity spikes 06:09:17 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/692) 276:280 to QC_BAD because slow apogee CT flow 06:09:17 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/692) 1:6 to QC_BAD because prior to dive start 06:09:17 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/692) 1:6 276:280 690:692 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 06:09:17 27 Mar 2017 UTC: INFO: QC.py(180): Changed (14/692) 1:6 276:280 690:692 to QC_BAD because changed corrected salin implies changed speed 06:09:18 27 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 06:09:18 27 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 460 interp_salinity data_points in_between 406 411 % suspect thermal-inertia points 408 409 06:09:18 27 Mar 2017 UTC: INFO: QC.py(180): Changed (9/692) 236 240 241 247 256 258 261 289 309 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 06:09:18 27 Mar 2017 UTC: INFO: QC.py(180): Changed (9/692) 236 240 241 247 256 258 261 289 309 to QC_INTERPOLATED because changed corrected temp implies changed speed 06:09:18 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.92 cm/s 06:09:18 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.04 cm/s 06:09:18 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 06:09:18 27 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (196/692) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 06:09:18 27 Mar 2017 UTC: INFO: QC.py(180): Changed (7/692) 3 236 241 256 261 690 691 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 06:09:18 27 Mar 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/692) 689 to QC_BAD because slow flow in SBE43 06:09:18 27 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (196/692) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 06:09:18 27 Mar 2017 UTC: INFO: QC.py(180): Changed (7/692) 3 236 241 256 261 690 691 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 06:09:18 27 Mar 2017 UTC: INFO: QC.py(180): Changed (14/692) 1:6 276:280 690:692 to QC_BAD because changed salinity implies changed optode oxygen 06:09:18 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 06:09:18 27 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 06:09:18 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 06:09:18 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 460: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.02% reduction 06:09:18 27 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.460 06:09:18 27 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:09:18 27 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:09:18 27 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:09:19 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 06:09:19 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 06:13:12 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 06:13:13 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 06:13:13 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 06:14:03 27 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:14:03 27 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:14:03 27 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 06:14:03 27 Mar 2017 UTC /home/sg626/p6260460.log /home/sg626/p6260460.eng /home/sg626/p6260460.asc /home/sg626/p6260460.pro /home/sg626/p6260460.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 06:14:03 27 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:14:03 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:14:03 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:14:03 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:14:03 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:14:03 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:14:03 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:14:03 27 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:14:03 27 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:14:03 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:14:03 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:14:03 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:14:03 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:14:03 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:14:03 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:14:03 27 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:14:03 27 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 06:14:03 27 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 06:14:03 27 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 06:14:03 27 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 06:14:03 27 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:14:03 27 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:14:03 27 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:14:03 27 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 06:14:03 27 Mar 2017 UTC 09:49:18 27 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 18476 09:49:18 27 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:52:14 27 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 18691 09:52:14 27 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:52:14 27 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:52:14 27 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:52:14 27 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:52:14 27 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170326235213 ] 09:52:14 27 Mar 2017 UTC: INFO: Base.py(1333): PID:18698 09:52:14 27 Mar 2017 UTC: INFO: Base.py(1375): Started processing 09:52:14 27 Mar 2017 UTC 09:52:14 27 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:52:15 27 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:52:15 27 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:52:15 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:52:15 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:461 calls_made:1 call_cycle:0 09:52:15 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:52:15 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:461 calls_made:1 call_cycle:0 09:52:15 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:52:15 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:461 calls_made:1 call_cycle:0 09:52:15 27 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:461 calls_made:1 call_cycle:0 2250.2230 -15801.7810 03/27/17 09:47:00 UTC) to sdrifter@soest.hawaii.edu 09:52:15 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:461 calls_made:1 call_cycle:0 09:52:15 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:52:15 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:461 calls_made:1 call_cycle:0 09:52:15 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:52:15 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:461 calls_made:1 call_cycle:0 09:52:15 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:52:15 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:461 calls_made:1 call_cycle:0 09:52:15 27 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:52:15 27 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:52:22 27 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:52:24 27 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:52:24 27 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:52:24 27 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:52:24 27 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:52:24 27 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:52:27 27 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0461lz 09:52:27 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0461lz.x00 09:52:27 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0461lz.x01 09:52:27 27 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0461lz.r in process_file_group 09:52:27 27 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260461.log 09:52:27 27 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:52:27 27 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0461dz 09:52:27 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0461dz.x00 09:52:27 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0461dz.x01 09:52:27 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0461dz.x02 09:52:27 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0461dz.x03 09:52:27 27 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0461dz.r in process_file_group 09:52:27 27 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [461] 09:52:27 27 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [461] 09:52:28 27 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260461) for profiles 09:52:28 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 09:52:28 27 Mar 2017 UTC: INFO: QC.py(365): Changed (9/630) 224 242 280:282 288:291 to QC_PROBABLY_BAD because raw temperature spikes 09:52:28 27 Mar 2017 UTC: INFO: QC.py(408): Changed (9/630) 224 242 280:282 288:291 to QC_PROBABLY_BAD because raw conductivity spikes 09:52:28 27 Mar 2017 UTC: INFO: QC.py(180): Changed (9/630) 224 242 280:282 288:291 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 09:52:28 27 Mar 2017 UTC: INFO: QC.py(365): Changed (9/630) 224 242 280:282 288:291 to QC_INTERPOLATED because temperature spikes 09:52:28 27 Mar 2017 UTC: INFO: QC.py(408): Changed (9/630) 224 242 280:282 288:291 to QC_INTERPOLATED because conductivity spikes 09:52:28 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/630) 268:272 to QC_BAD because slow apogee CT flow 09:52:28 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/630) 1:6 to QC_BAD because prior to dive start 09:52:28 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/630) 1:6 268:272 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:52:28 27 Mar 2017 UTC: INFO: QC.py(180): Changed (11/630) 1:6 268:272 to QC_BAD because changed corrected salin implies changed speed 09:52:28 27 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:52:28 27 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 461 interp_salinity data_points in_between 601 629 % suspect thermal-inertia points 605 09:52:28 27 Mar 2017 UTC: INFO: QC.py(180): Changed (9/630) 224 242 280:282 288:291 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 09:52:28 27 Mar 2017 UTC: INFO: QC.py(180): Changed (9/630) 224 242 280:282 288:291 to QC_INTERPOLATED because changed corrected temp implies changed speed 09:52:28 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.01 cm/s 09:52:28 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.41 cm/s 09:52:28 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:52:28 27 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (198/630) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:52:28 27 Mar 2017 UTC: INFO: QC.py(180): Changed (2/630) 281 291 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:52:28 27 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (198/630) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 09:52:28 27 Mar 2017 UTC: INFO: QC.py(180): Changed (2/630) 281 291 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:52:28 27 Mar 2017 UTC: INFO: QC.py(180): Changed (11/630) 1:6 268:272 to QC_BAD because changed salinity implies changed optode oxygen 09:52:28 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:52:28 27 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:52:28 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 09:52:29 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 461: Data set size for profile, binned and kkyy files reduced by 11 points, a 1.75% reduction 09:52:29 27 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.461 09:52:29 27 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:52:29 27 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:52:29 27 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:52:29 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 09:52:29 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 09:56:22 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 09:56:23 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 09:56:23 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 09:57:13 27 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:57:13 27 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:57:13 27 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:57:13 27 Mar 2017 UTC /home/sg626/p6260461.log /home/sg626/p6260461.eng /home/sg626/p6260461.asc /home/sg626/p6260461.pro /home/sg626/p6260461.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 09:57:13 27 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:57:13 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:57:13 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:57:13 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:57:13 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:57:13 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:57:13 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:57:13 27 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:57:13 27 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:57:13 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:57:13 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:57:13 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:57:13 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:57:13 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:57:13 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:57:13 27 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:57:13 27 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:57:13 27 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:57:13 27 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:57:13 27 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:57:13 27 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:57:13 27 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:57:13 27 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:57:13 27 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 09:57:13 27 Mar 2017 UTC 13:45:49 27 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 25269 13:45:49 27 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:49:00 27 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 25397 13:49:00 27 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:49:00 27 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:49:00 27 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:49:00 27 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:49:00 27 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170327034900 ] 13:49:00 27 Mar 2017 UTC: INFO: Base.py(1333): PID:25404 13:49:00 27 Mar 2017 UTC: INFO: Base.py(1375): Started processing 13:49:00 27 Mar 2017 UTC 13:49:00 27 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:49:02 27 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:49:02 27 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:49:02 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:49:02 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:462 calls_made:2 call_cycle:0 13:49:02 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:49:02 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:462 calls_made:2 call_cycle:0 13:49:02 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:49:02 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:462 calls_made:2 call_cycle:0 13:49:02 27 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:462 calls_made:2 call_cycle:0 2250.9190 -15801.6990 03/27/17 13:41:31 UTC) to sdrifter@soest.hawaii.edu 13:49:02 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:462 calls_made:2 call_cycle:0 13:49:02 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:49:02 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:462 calls_made:2 call_cycle:0 13:49:02 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:49:02 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:462 calls_made:2 call_cycle:0 13:49:02 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:49:02 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:462 calls_made:2 call_cycle:0 13:49:02 27 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:49:02 27 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:49:09 27 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:49:10 27 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:49:10 27 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:49:10 27 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:49:10 27 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:49:10 27 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:49:14 27 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0462lz 13:49:14 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0462lz.x00 13:49:14 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0462lz.x01 13:49:14 27 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0462lz.r in process_file_group 13:49:14 27 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260462.log 13:49:14 27 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:49:14 27 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0462dz 13:49:14 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0462dz.x00 13:49:14 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0462dz.x01 13:49:14 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0462dz.x02 13:49:14 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0462dz.x03 13:49:14 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0462dz.x04 13:49:14 27 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0462dz.r in process_file_group 13:49:14 27 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [462] 13:49:14 27 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [462] 13:49:14 27 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260462) for profiles 13:49:14 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:49:14 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/690) 687 688 to QC_BAD because CT out of water 13:49:14 27 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.070m) 13:49:14 27 Mar 2017 UTC: INFO: QC.py(365): Changed (12/690) 2 3 5 219 251 280:282 686:689 to QC_PROBABLY_BAD because raw temperature spikes 13:49:14 27 Mar 2017 UTC: INFO: QC.py(377): Changed (2/690) 687 688 to QC_BAD because raw salinity below bound 13:49:14 27 Mar 2017 UTC: INFO: QC.py(408): Changed (6/690) 219 251 280:282 689 to QC_PROBABLY_BAD because raw conductivity spikes 13:49:14 27 Mar 2017 UTC: INFO: QC.py(180): Changed (10/690) 2 3 5 219 251 280:282 686 689 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:49:14 27 Mar 2017 UTC: INFO: QC.py(365): Changed (12/690) 2 3 5 219 251 280:282 686:689 to QC_INTERPOLATED because temperature spikes 13:49:14 27 Mar 2017 UTC: INFO: QC.py(377): Changed (2/690) 687 688 to QC_BAD because salinity below bound 13:49:14 27 Mar 2017 UTC: INFO: QC.py(408): Changed (6/690) 219 251 280:282 689 to QC_INTERPOLATED because conductivity spikes 13:49:14 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/690) 266:270 to QC_BAD because slow apogee CT flow 13:49:14 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/690) 1:6 to QC_BAD because prior to dive start 13:49:14 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (4/690) 685 686 689 690 to QC_BAD because end of climb 13:49:14 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (17/690) 1:6 266:270 685:690 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:49:14 27 Mar 2017 UTC: INFO: QC.py(180): Changed (17/690) 1:6 266:270 685:690 to QC_BAD because changed corrected salin implies changed speed 13:49:15 27 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:49:15 27 Mar 2017 UTC: INFO: QC.py(180): Changed (5/690) 219 251 280:282 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 13:49:15 27 Mar 2017 UTC: INFO: QC.py(180): Changed (5/690) 219 251 280:282 to QC_INTERPOLATED because changed corrected temp implies changed speed 13:49:15 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.36 cm/s 13:49:15 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.59 cm/s 13:49:15 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:49:15 27 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (205/690) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:49:15 27 Mar 2017 UTC: INFO: QC.py(180): Changed (9/690) 2 3 5 251 281 686:689 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:49:15 27 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (205/690) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:49:15 27 Mar 2017 UTC: INFO: QC.py(180): Changed (9/690) 2 3 5 251 281 686:689 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:49:15 27 Mar 2017 UTC: INFO: QC.py(180): Changed (17/690) 1:6 266:270 685:690 to QC_BAD because changed salinity implies changed optode oxygen 13:49:15 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:49:15 27 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:49:15 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:49:16 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 462: Data set size for profile, binned and kkyy files reduced by 17 points, a 2.46% reduction 13:49:16 27 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.462 13:49:16 27 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:49:16 27 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:49:16 27 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:49:16 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:49:16 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:53:11 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 13:53:12 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:53:12 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:54:02 27 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:54:02 27 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:54:02 27 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:54:02 27 Mar 2017 UTC /home/sg626/p6260462.log /home/sg626/p6260462.eng /home/sg626/p6260462.asc /home/sg626/p6260462.pro /home/sg626/p6260462.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:54:02 27 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:54:02 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:54:02 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:54:02 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:54:02 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:54:02 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:54:02 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:54:02 27 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:54:02 27 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:54:02 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:54:02 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:54:02 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:54:02 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:54:02 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:54:02 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:54:02 27 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:54:02 27 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:54:02 27 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:54:02 27 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:54:02 27 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:54:02 27 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:54:02 27 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:54:02 27 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:54:02 27 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 13:54:02 27 Mar 2017 UTC 17:46:52 27 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 31864 17:46:52 27 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:51:23 27 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 32096 17:51:23 27 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:51:23 27 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:51:23 27 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:51:23 27 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:51:23 27 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170327075122 ] 17:51:23 27 Mar 2017 UTC: INFO: Base.py(1333): PID:32103 17:51:23 27 Mar 2017 UTC: INFO: Base.py(1375): Started processing 17:51:23 27 Mar 2017 UTC 17:51:23 27 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:51:24 27 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:51:24 27 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:51:24 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:51:24 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:463 calls_made:1 call_cycle:0 17:51:24 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:51:24 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:463 calls_made:1 call_cycle:0 17:51:24 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:51:24 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:463 calls_made:1 call_cycle:0 17:51:24 27 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:463 calls_made:1 call_cycle:0 2249.1180 -15800.6800 03/27/17 17:44:01 UTC) to sdrifter@soest.hawaii.edu 17:51:24 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:463 calls_made:1 call_cycle:0 17:51:24 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:51:24 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:463 calls_made:1 call_cycle:0 17:51:24 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:51:24 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:463 calls_made:1 call_cycle:0 17:51:24 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:51:24 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:463 calls_made:1 call_cycle:0 17:51:24 27 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:51:24 27 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:51:32 27 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:51:33 27 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:51:33 27 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:51:33 27 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:51:33 27 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:51:33 27 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:51:36 27 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0463lz 17:51:36 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0463lz.x00 17:51:36 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0463lz.x01 17:51:36 27 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0463lz.r in process_file_group 17:51:36 27 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260463.log 17:51:36 27 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:51:36 27 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0463dz 17:51:36 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0463dz.x00 17:51:36 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0463dz.x01 17:51:36 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0463dz.x02 17:51:36 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0463dz.x03 17:51:36 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0463dz.x04 17:51:36 27 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0463dz.r in process_file_group 17:51:37 27 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [463] 17:51:37 27 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [463] 17:51:37 27 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260463) for profiles 17:51:37 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:51:37 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/718) 716 718 to QC_BAD because CT out of water 17:51:37 27 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.113m) 17:51:37 27 Mar 2017 UTC: INFO: QC.py(365): Changed (9/718) 231 256 263 279 287 291 296 716 717 to QC_PROBABLY_BAD because raw temperature spikes 17:51:37 27 Mar 2017 UTC: INFO: QC.py(377): Changed (1/718) 716 to QC_BAD because raw salinity below bound 17:51:37 27 Mar 2017 UTC: INFO: QC.py(408): Changed (7/718) 231 256 263 279 287 291 296 to QC_PROBABLY_BAD because raw conductivity spikes 17:51:37 27 Mar 2017 UTC: INFO: QC.py(180): Changed (8/718) 231 256 263 279 287 291 296 717 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:51:37 27 Mar 2017 UTC: INFO: QC.py(180): Changed (1/718) 718 to QC_BAD because changed raw cond implies changed raw salinity 17:51:37 27 Mar 2017 UTC: INFO: QC.py(365): Changed (9/718) 231 256 263 279 287 291 296 716 717 to QC_INTERPOLATED because temperature spikes 17:51:37 27 Mar 2017 UTC: INFO: QC.py(377): Changed (1/718) 716 to QC_BAD because salinity below bound 17:51:37 27 Mar 2017 UTC: INFO: QC.py(408): Changed (7/718) 231 256 263 279 287 291 296 to QC_INTERPOLATED because conductivity spikes 17:51:37 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/718) 277:281 to QC_BAD because slow apogee CT flow 17:51:37 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/718) 1:6 to QC_BAD because prior to dive start 17:51:37 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/718) 715 717 to QC_BAD because end of climb 17:51:37 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/718) 1:6 277:281 715:718 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:51:37 27 Mar 2017 UTC: INFO: QC.py(180): Changed (15/718) 1:6 277:281 715:718 to QC_BAD because changed corrected salin implies changed speed 17:51:38 27 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:51:38 27 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 463 interp_salinity data_points in_between 677 713 % suspect thermal-inertia points 677 678 17:51:38 27 Mar 2017 UTC: INFO: QC.py(180): Changed (6/718) 231 256 263 287 291 296 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 17:51:38 27 Mar 2017 UTC: INFO: QC.py(180): Changed (6/718) 231 256 263 287 291 296 to QC_INTERPOLATED because changed corrected temp implies changed speed 17:51:38 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.17 cm/s 17:51:38 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.02 cm/s 17:51:38 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:51:38 27 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (207/718) 153:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:51:38 27 Mar 2017 UTC: INFO: QC.py(180): Changed (6/718) 231 256 291 296 716 717 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:51:38 27 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (207/718) 153:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:51:38 27 Mar 2017 UTC: INFO: QC.py(180): Changed (6/718) 231 256 291 296 716 717 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:51:38 27 Mar 2017 UTC: INFO: QC.py(180): Changed (15/718) 1:6 277:281 715:718 to QC_BAD because changed salinity implies changed optode oxygen 17:51:38 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:51:38 27 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:51:38 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:51:38 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 463: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.09% reduction 17:51:38 27 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.463 17:51:38 27 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:51:38 27 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:51:38 27 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:51:39 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:51:39 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:55:35 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 17:55:36 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:55:36 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:56:27 27 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:56:27 27 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:56:27 27 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:56:27 27 Mar 2017 UTC /home/sg626/p6260463.log /home/sg626/p6260463.eng /home/sg626/p6260463.asc /home/sg626/p6260463.pro /home/sg626/p6260463.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:56:27 27 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:56:27 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:56:27 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:56:27 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:56:27 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:56:27 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:56:27 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:56:27 27 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:56:27 27 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:56:27 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:56:27 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:56:27 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:56:27 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:56:27 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:56:27 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:56:27 27 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:56:27 27 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:56:27 27 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:56:27 27 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:56:27 27 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:56:27 27 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:56:27 27 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:56:27 27 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:56:27 27 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 17:56:27 27 Mar 2017 UTC 21:57:46 27 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 8936 21:57:46 27 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:00:57 27 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9199 22:00:57 27 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:00:57 27 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:00:57 27 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:00:57 27 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:00:57 27 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170327120056 ] 22:00:57 27 Mar 2017 UTC: INFO: Base.py(1333): PID:9207 22:00:57 27 Mar 2017 UTC: INFO: Base.py(1375): Started processing 22:00:57 27 Mar 2017 UTC 22:00:57 27 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:00:58 27 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:00:58 27 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:00:58 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:00:58 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:464 calls_made:1 call_cycle:0 22:00:58 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:00:58 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:464 calls_made:1 call_cycle:0 22:00:58 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:00:58 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:464 calls_made:1 call_cycle:0 22:00:58 27 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:464 calls_made:1 call_cycle:0 2246.9440 -15800.2100 03/27/17 21:55:22 UTC) to sdrifter@soest.hawaii.edu 22:00:58 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:464 calls_made:1 call_cycle:0 22:00:58 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:00:58 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:464 calls_made:1 call_cycle:0 22:00:58 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:00:58 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:464 calls_made:1 call_cycle:0 22:00:58 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:00:58 27 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:464 calls_made:1 call_cycle:0 22:00:58 27 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:00:58 27 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:01:06 27 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:01:07 27 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:01:07 27 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:01:07 27 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:01:07 27 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:01:07 27 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:01:11 27 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0464lz 22:01:11 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0464lz.x00 22:01:11 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0464lz.x01 22:01:11 27 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0464lz.r in process_file_group 22:01:11 27 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260464.log 22:01:11 27 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 22:01:11 27 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0464dz 22:01:11 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0464dz.x00 22:01:11 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0464dz.x01 22:01:11 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0464dz.x02 22:01:11 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0464dz.x03 22:01:11 27 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0464dz.x04 22:01:11 27 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0464dz.r in process_file_group 22:01:11 27 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [464] 22:01:11 27 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [464] 22:01:11 27 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260464) for profiles 22:01:11 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 22:01:11 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/754) 753 754 to QC_BAD because CT out of water 22:01:11 27 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.022m) 22:01:11 27 Mar 2017 UTC: INFO: QC.py(365): Changed (9/754) 2 3 229 263 296 297 305 708 753 to QC_PROBABLY_BAD because raw temperature spikes 22:01:11 27 Mar 2017 UTC: INFO: QC.py(377): Changed (2/754) 753 754 to QC_BAD because raw salinity below bound 22:01:11 27 Mar 2017 UTC: INFO: QC.py(408): Changed (5/754) 229 231 263 297 305 to QC_PROBABLY_BAD because raw conductivity spikes 22:01:11 27 Mar 2017 UTC: INFO: QC.py(180): Changed (8/754) 2 3 229 263 296 297 305 708 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 22:01:11 27 Mar 2017 UTC: INFO: QC.py(180): Changed (1/754) 231 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 22:01:11 27 Mar 2017 UTC: INFO: QC.py(365): Changed (9/754) 2 3 229 263 296 297 305 708 753 to QC_INTERPOLATED because temperature spikes 22:01:11 27 Mar 2017 UTC: INFO: QC.py(377): Changed (2/754) 753 754 to QC_BAD because salinity below bound 22:01:11 27 Mar 2017 UTC: INFO: QC.py(408): Changed (5/754) 229 231 263 297 305 to QC_INTERPOLATED because conductivity spikes 22:01:11 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/754) 281:285 to QC_BAD because slow apogee CT flow 22:01:11 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/754) 1:6 to QC_BAD because prior to dive start 22:01:11 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/754) 751 752 to QC_BAD because end of climb 22:01:11 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/754) 1:6 281:285 751:754 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:01:11 27 Mar 2017 UTC: INFO: QC.py(180): Changed (15/754) 1:6 281:285 751:754 to QC_BAD because changed corrected salin implies changed speed 22:01:12 27 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:01:12 27 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 464 interp_salinity data_points in_between 717 747 % suspect thermal-inertia points 719:724 22:01:12 27 Mar 2017 UTC: INFO: QC.py(180): Changed (6/754) 229 263 296 297 305 708 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 22:01:12 27 Mar 2017 UTC: INFO: QC.py(180): Changed (1/754) 231 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 22:01:12 27 Mar 2017 UTC: INFO: QC.py(180): Changed (6/754) 229 263 296 297 305 708 to QC_INTERPOLATED because changed corrected temp implies changed speed 22:01:12 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.17 cm/s 22:01:12 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.26 cm/s 22:01:12 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:01:12 27 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (213/754) 155 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:01:12 27 Mar 2017 UTC: INFO: QC.py(180): Changed (5/754) 2 3 296 708 753 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 22:01:12 27 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (213/754) 155 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 22:01:12 27 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (4/754) 746 750 751 754 to QC_BAD because bad aa4330 oyxgen 22:01:12 27 Mar 2017 UTC: INFO: QC.py(180): Changed (5/754) 2 3 296 708 753 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 22:01:12 27 Mar 2017 UTC: INFO: QC.py(180): Changed (13/754) 1:6 281:285 752 753 to QC_BAD because changed salinity implies changed optode oxygen 22:01:12 27 Mar 2017 UTC: INFO: QC.py(180): Changed (1/754) 231 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 22:01:12 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:01:12 27 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 22:01:12 27 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 22:01:13 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 464: Data set size for profile, binned and kkyy files reduced by 15 points, a 1.99% reduction 22:01:13 27 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.464 22:01:13 27 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:01:13 27 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:01:13 27 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:01:13 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 22:01:13 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 22:05:07 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 22:05:09 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 22:05:09 27 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 22:05:59 27 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:05:59 27 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:05:59 27 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:05:59 27 Mar 2017 UTC /home/sg626/p6260464.log /home/sg626/p6260464.eng /home/sg626/p6260464.asc /home/sg626/p6260464.pro /home/sg626/p6260464.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 22:05:59 27 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:05:59 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:05:59 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:05:59 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:05:59 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:05:59 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:05:59 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:05:59 27 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:05:59 27 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:05:59 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:05:59 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:05:59 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:05:59 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:05:59 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:05:59 27 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:05:59 27 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:05:59 27 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:05:59 27 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:05:59 27 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:05:59 27 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:05:59 27 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:05:59 27 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:05:59 27 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:05:59 27 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 22:05:59 27 Mar 2017 UTC 02:01:44 28 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 15897 02:01:44 28 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:05:29 28 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 16033 02:05:29 28 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:05:29 28 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:05:29 28 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:05:29 28 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:05:29 28 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170327160528 ] 02:05:29 28 Mar 2017 UTC: INFO: Base.py(1333): PID:16041 02:05:29 28 Mar 2017 UTC: INFO: Base.py(1375): Started processing 02:05:29 28 Mar 2017 UTC 02:05:29 28 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:05:30 28 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:05:30 28 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:05:30 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:05:30 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:465 calls_made:1 call_cycle:0 02:05:30 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:05:30 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:465 calls_made:1 call_cycle:0 02:05:30 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:05:30 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:465 calls_made:1 call_cycle:0 02:05:30 28 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:465 calls_made:1 call_cycle:0 2244.8210 -15759.9420 03/28/17 01:58:55 UTC) to sdrifter@soest.hawaii.edu 02:05:30 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:465 calls_made:1 call_cycle:0 02:05:30 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:05:30 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:465 calls_made:1 call_cycle:0 02:05:30 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:05:30 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:465 calls_made:1 call_cycle:0 02:05:30 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:05:30 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:465 calls_made:1 call_cycle:0 02:05:30 28 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:05:30 28 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:05:38 28 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:05:39 28 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:05:39 28 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:05:39 28 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:05:39 28 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:05:39 28 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:05:42 28 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0465lz 02:05:42 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0465lz.x00 02:05:42 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0465lz.x01 02:05:42 28 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0465lz.r in process_file_group 02:05:42 28 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260465.log 02:05:42 28 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 02:05:42 28 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0465dz 02:05:42 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0465dz.x00 02:05:42 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0465dz.x01 02:05:42 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0465dz.x02 02:05:42 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0465dz.x03 02:05:42 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0465dz.x04 02:05:42 28 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0465dz.r in process_file_group 02:05:43 28 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [465] 02:05:43 28 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [465] 02:05:43 28 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260465) for profiles 02:05:43 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 02:05:43 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/734) 732:734 to QC_BAD because CT out of water 02:05:43 28 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.053m) 02:05:43 28 Mar 2017 UTC: INFO: QC.py(365): Changed (9/734) 2 247 264 281 285 288 320 331 733 to QC_PROBABLY_BAD because raw temperature spikes 02:05:43 28 Mar 2017 UTC: INFO: QC.py(408): Changed (5/734) 2 247 281 288 320 to QC_PROBABLY_BAD because raw conductivity spikes 02:05:43 28 Mar 2017 UTC: INFO: QC.py(180): Changed (9/734) 2 247 264 281 285 288 320 331 733 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:05:43 28 Mar 2017 UTC: INFO: QC.py(180): Changed (3/734) 732:734 to QC_BAD because changed raw cond implies changed raw salinity 02:05:43 28 Mar 2017 UTC: INFO: QC.py(365): Changed (9/734) 2 247 264 281 285 288 320 331 733 to QC_INTERPOLATED because temperature spikes 02:05:43 28 Mar 2017 UTC: INFO: QC.py(408): Changed (5/734) 2 247 281 288 320 to QC_INTERPOLATED because conductivity spikes 02:05:43 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/734) 283:287 to QC_BAD because slow apogee CT flow 02:05:43 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/734) 1:6 to QC_BAD because prior to dive start 02:05:43 28 Mar 2017 UTC: INFO: QC.py(488): Changed (1/734) 288 to QC_PROBABLY_BAD because bad interpolation anchors 02:05:43 28 Mar 2017 UTC: INFO: QC.py(489): SUGGESTION: 465 bad_conductivity data_points in_between 286 288 % bad interpolation anchors 02:05:43 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/734) 1:6 283:287 732:734 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:05:43 28 Mar 2017 UTC: INFO: QC.py(180): Changed (14/734) 1:6 283:287 732:734 to QC_BAD because changed corrected salin implies changed speed 02:05:44 28 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:05:44 28 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 465 interp_salinity data_points in_between 698 706 % suspect thermal-inertia points 699 700 02:05:44 28 Mar 2017 UTC: INFO: QC.py(180): Changed (6/734) 247 264 281 288 320 331 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 02:05:44 28 Mar 2017 UTC: INFO: QC.py(180): Changed (1/734) 288 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 02:05:44 28 Mar 2017 UTC: INFO: QC.py(180): Changed (6/734) 247 264 281 288 320 331 to QC_INTERPOLATED because changed corrected temp implies changed speed 02:05:44 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.66 cm/s 02:05:44 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.29 cm/s 02:05:44 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:05:44 28 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (211/734) 154 155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:05:44 28 Mar 2017 UTC: INFO: QC.py(180): Changed (4/734) 2 281 331 733 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:05:44 28 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (211/734) 154 155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 02:05:44 28 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/734) 732 733 to QC_BAD because bad aa4330 oyxgen 02:05:44 28 Mar 2017 UTC: INFO: QC.py(180): Changed (3/734) 2 281 331 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:05:44 28 Mar 2017 UTC: INFO: QC.py(180): Changed (12/734) 1:6 283:287 734 to QC_BAD because changed salinity implies changed optode oxygen 02:05:44 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:05:44 28 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:05:44 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 02:05:44 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 465: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.91% reduction 02:05:45 28 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.465 02:05:45 28 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:05:45 28 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:05:45 28 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:05:45 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 02:05:45 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 02:09:42 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 02:09:43 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 02:09:43 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 02:10:34 28 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:10:34 28 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:10:34 28 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:10:34 28 Mar 2017 UTC /home/sg626/p6260465.log /home/sg626/p6260465.eng /home/sg626/p6260465.asc /home/sg626/p6260465.pro /home/sg626/p6260465.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 02:10:34 28 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:10:34 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:10:34 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:10:34 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:10:34 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:10:34 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:10:34 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:10:34 28 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:10:34 28 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:10:34 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:10:34 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:10:34 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:10:34 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:10:34 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:10:34 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:10:34 28 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:10:34 28 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:10:34 28 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:10:34 28 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:10:34 28 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:10:34 28 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:10:34 28 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:10:34 28 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:10:34 28 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 02:10:34 28 Mar 2017 UTC 06:03:50 28 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 23265 06:03:50 28 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:07:04 28 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 23472 06:07:04 28 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:07:04 28 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 06:07:04 28 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 06:07:04 28 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:07:04 28 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170327200704 ] 06:07:04 28 Mar 2017 UTC: INFO: Base.py(1333): PID:23479 06:07:04 28 Mar 2017 UTC: INFO: Base.py(1375): Started processing 06:07:04 28 Mar 2017 UTC 06:07:04 28 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 06:07:06 28 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 06:07:06 28 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:07:06 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:07:06 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:466 calls_made:1 call_cycle:0 06:07:06 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:07:06 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:466 calls_made:1 call_cycle:0 06:07:06 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:07:06 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:466 calls_made:1 call_cycle:0 06:07:06 28 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:466 calls_made:1 call_cycle:0 2243.0600 -15759.7470 03/28/17 06:01:30 UTC) to sdrifter@soest.hawaii.edu 06:07:06 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:466 calls_made:1 call_cycle:0 06:07:06 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:07:06 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:466 calls_made:1 call_cycle:0 06:07:06 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:07:06 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:466 calls_made:1 call_cycle:0 06:07:06 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:07:06 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:466 calls_made:1 call_cycle:0 06:07:06 28 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:07:06 28 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:07:13 28 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:07:14 28 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:07:14 28 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 06:07:14 28 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:07:14 28 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:07:14 28 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 06:07:18 28 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0466lz 06:07:18 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0466lz.x00 06:07:18 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0466lz.x01 06:07:18 28 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0466lz.r in process_file_group 06:07:18 28 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260466.log 06:07:18 28 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 06:07:18 28 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0466dz 06:07:18 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0466dz.x00 06:07:18 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0466dz.x01 06:07:18 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0466dz.x02 06:07:18 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0466dz.x03 06:07:18 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0466dz.x04 06:07:18 28 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0466dz.r in process_file_group 06:07:18 28 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [466] 06:07:18 28 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [466] 06:07:19 28 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260466) for profiles 06:07:19 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 06:07:19 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/733) 732 733 to QC_BAD because CT out of water 06:07:19 28 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.082m) 06:07:19 28 Mar 2017 UTC: INFO: QC.py(365): Changed (9/733) 2 3 220 221 235 236 267 279 732 to QC_PROBABLY_BAD because raw temperature spikes 06:07:19 28 Mar 2017 UTC: INFO: QC.py(377): Changed (2/733) 732 733 to QC_BAD because raw salinity below bound 06:07:19 28 Mar 2017 UTC: INFO: QC.py(408): Changed (6/733) 2 220 221 235 267 279 to QC_PROBABLY_BAD because raw conductivity spikes 06:07:19 28 Mar 2017 UTC: INFO: QC.py(180): Changed (8/733) 2 3 220 221 235 236 267 279 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 06:07:19 28 Mar 2017 UTC: INFO: QC.py(365): Changed (9/733) 2 3 220 221 235 236 267 279 732 to QC_INTERPOLATED because temperature spikes 06:07:19 28 Mar 2017 UTC: INFO: QC.py(377): Changed (2/733) 732 733 to QC_BAD because salinity below bound 06:07:19 28 Mar 2017 UTC: INFO: QC.py(408): Changed (6/733) 2 220 221 235 267 279 to QC_INTERPOLATED because conductivity spikes 06:07:19 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/733) 272:276 to QC_BAD because slow apogee CT flow 06:07:19 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/733) 1:6 to QC_BAD because prior to dive start 06:07:19 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/733) 1:6 272:276 732 733 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 06:07:19 28 Mar 2017 UTC: INFO: QC.py(180): Changed (13/733) 1:6 272:276 732 733 to QC_BAD because changed corrected salin implies changed speed 06:07:20 28 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 06:07:20 28 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 466 interp_salinity data_points in_between 676 685 % suspect thermal-inertia points 680 06:07:20 28 Mar 2017 UTC: INFO: QC.py(180): Changed (6/733) 220 221 235 236 267 279 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 06:07:20 28 Mar 2017 UTC: INFO: QC.py(180): Changed (6/733) 220 221 235 236 267 279 to QC_INTERPOLATED because changed corrected temp implies changed speed 06:07:20 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.48 cm/s 06:07:20 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.23 cm/s 06:07:20 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 06:07:20 28 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (204/733) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 06:07:20 28 Mar 2017 UTC: INFO: QC.py(180): Changed (5/733) 2 3 221 236 732 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 06:07:20 28 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (204/733) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 06:07:20 28 Mar 2017 UTC: INFO: QC.py(180): Changed (5/733) 2 3 221 236 732 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 06:07:20 28 Mar 2017 UTC: INFO: QC.py(180): Changed (13/733) 1:6 272:276 732 733 to QC_BAD because changed salinity implies changed optode oxygen 06:07:20 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 06:07:20 28 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 06:07:20 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 06:07:20 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 466: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.77% reduction 06:07:20 28 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.466 06:07:20 28 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:07:20 28 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:07:20 28 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:07:20 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 06:07:20 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 06:11:18 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 06:11:20 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 06:11:20 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 06:12:10 28 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:12:10 28 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:12:10 28 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 06:12:10 28 Mar 2017 UTC /home/sg626/p6260466.log /home/sg626/p6260466.eng /home/sg626/p6260466.asc /home/sg626/p6260466.pro /home/sg626/p6260466.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 06:12:10 28 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:12:10 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:12:10 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:12:10 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:12:10 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:12:10 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:12:10 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:12:10 28 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:12:10 28 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:12:10 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:12:10 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:12:10 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:12:10 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:12:10 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:12:10 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:12:10 28 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:12:10 28 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 06:12:10 28 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 06:12:10 28 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 06:12:10 28 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 06:12:10 28 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:12:10 28 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:12:10 28 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:12:10 28 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 06:12:10 28 Mar 2017 UTC 10:05:59 28 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 2032 10:05:59 28 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:09:07 28 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 2211 10:09:07 28 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:09:07 28 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:09:07 28 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:09:07 28 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:09:07 28 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170328000907 ] 10:09:07 28 Mar 2017 UTC: INFO: Base.py(1333): PID:2220 10:09:07 28 Mar 2017 UTC: INFO: Base.py(1375): Started processing 10:09:07 28 Mar 2017 UTC 10:09:08 28 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:09:09 28 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:09:09 28 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:09:09 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:09:09 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:467 calls_made:1 call_cycle:0 10:09:09 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:09:09 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:467 calls_made:1 call_cycle:0 10:09:09 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:09:09 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:467 calls_made:1 call_cycle:0 10:09:09 28 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:467 calls_made:1 call_cycle:0 2241.4210 -15800.0060 03/28/17 10:03:41 UTC) to sdrifter@soest.hawaii.edu 10:09:09 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:467 calls_made:1 call_cycle:0 10:09:09 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:09:09 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:467 calls_made:1 call_cycle:0 10:09:09 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:09:09 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:467 calls_made:1 call_cycle:0 10:09:09 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:09:09 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:467 calls_made:1 call_cycle:0 10:09:09 28 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:09:09 28 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:09:16 28 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:09:18 28 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:09:18 28 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:09:18 28 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:09:18 28 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:09:18 28 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:09:21 28 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0467lz 10:09:21 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0467lz.x00 10:09:21 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0467lz.x01 10:09:21 28 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0467lz.r in process_file_group 10:09:21 28 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260467.log 10:09:21 28 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:09:21 28 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0467dz 10:09:21 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0467dz.x00 10:09:21 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0467dz.x01 10:09:21 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0467dz.x02 10:09:21 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0467dz.x03 10:09:21 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0467dz.x04 10:09:21 28 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0467dz.r in process_file_group 10:09:22 28 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [467] 10:09:22 28 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [467] 10:09:22 28 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260467) for profiles 10:09:22 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 10:09:22 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/727) 726 727 to QC_BAD because CT out of water 10:09:22 28 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.052m) 10:09:22 28 Mar 2017 UTC: INFO: QC.py(365): Changed (5/727) 2 287 288 725 726 to QC_PROBABLY_BAD because raw temperature spikes 10:09:22 28 Mar 2017 UTC: INFO: QC.py(377): Changed (2/727) 726 727 to QC_BAD because raw salinity below bound 10:09:22 28 Mar 2017 UTC: INFO: QC.py(408): Changed (3/727) 246 287 288 to QC_PROBABLY_BAD because raw conductivity spikes 10:09:22 28 Mar 2017 UTC: INFO: QC.py(180): Changed (4/727) 2 287 288 725 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 10:09:22 28 Mar 2017 UTC: INFO: QC.py(180): Changed (1/727) 246 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 10:09:22 28 Mar 2017 UTC: INFO: QC.py(365): Changed (5/727) 2 287 288 725 726 to QC_INTERPOLATED because temperature spikes 10:09:22 28 Mar 2017 UTC: INFO: QC.py(377): Changed (2/727) 726 727 to QC_BAD because salinity below bound 10:09:22 28 Mar 2017 UTC: INFO: QC.py(408): Changed (3/727) 246 287 288 to QC_INTERPOLATED because conductivity spikes 10:09:22 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/727) 281:285 to QC_BAD because slow apogee CT flow 10:09:22 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/727) 1:6 to QC_BAD because prior to dive start 10:09:22 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/727) 1:6 281:285 726 727 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:09:22 28 Mar 2017 UTC: INFO: QC.py(180): Changed (13/727) 1:6 281:285 726 727 to QC_BAD because changed corrected salin implies changed speed 10:09:23 28 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 10:09:23 28 Mar 2017 UTC: INFO: QC.py(180): Changed (3/727) 287 288 725 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 10:09:23 28 Mar 2017 UTC: INFO: QC.py(180): Changed (1/727) 246 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 10:09:23 28 Mar 2017 UTC: INFO: QC.py(180): Changed (3/727) 287 288 725 to QC_INTERPOLATED because changed corrected temp implies changed speed 10:09:23 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.77 cm/s 10:09:23 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.21 cm/s 10:09:23 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:09:23 28 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (206/727) 155 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:09:23 28 Mar 2017 UTC: INFO: QC.py(180): Changed (3/727) 2 725 726 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 10:09:23 28 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (206/727) 155 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 10:09:23 28 Mar 2017 UTC: INFO: QC.py(180): Changed (3/727) 2 725 726 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 10:09:23 28 Mar 2017 UTC: INFO: QC.py(180): Changed (13/727) 1:6 281:285 726 727 to QC_BAD because changed salinity implies changed optode oxygen 10:09:23 28 Mar 2017 UTC: INFO: QC.py(180): Changed (1/727) 246 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 10:09:23 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:09:23 28 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:09:23 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 10:09:23 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 467: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.79% reduction 10:09:23 28 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.467 10:09:23 28 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:09:23 28 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:09:23 28 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:09:23 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 10:09:23 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 10:13:23 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 10:13:25 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 10:13:25 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 10:14:15 28 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:14:15 28 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:14:15 28 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 10:14:15 28 Mar 2017 UTC /home/sg626/p6260467.log /home/sg626/p6260467.eng /home/sg626/p6260467.asc /home/sg626/p6260467.pro /home/sg626/p6260467.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 10:14:15 28 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:14:15 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:14:15 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:14:15 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:14:15 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:14:15 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:14:15 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:14:15 28 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:14:15 28 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:14:15 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:14:15 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:14:15 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:14:15 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:14:15 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:14:15 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:14:15 28 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:14:15 28 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:14:15 28 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:14:15 28 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:14:15 28 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:14:15 28 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:14:15 28 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:14:15 28 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:14:15 28 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 10:14:15 28 Mar 2017 UTC 14:04:18 28 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9336 14:04:18 28 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:07:42 28 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9472 14:07:42 28 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:07:42 28 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 14:07:42 28 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 14:07:42 28 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:07:42 28 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170328040741 ] 14:07:42 28 Mar 2017 UTC: INFO: Base.py(1333): PID:9479 14:07:42 28 Mar 2017 UTC: INFO: Base.py(1375): Started processing 14:07:42 28 Mar 2017 UTC 14:07:42 28 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 14:07:43 28 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 14:07:43 28 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:07:43 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:07:43 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:468 calls_made:1 call_cycle:0 14:07:43 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:07:43 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:468 calls_made:1 call_cycle:0 14:07:43 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:07:43 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:468 calls_made:1 call_cycle:0 14:07:43 28 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:468 calls_made:1 call_cycle:0 2239.5220 -15800.3230 03/28/17 14:01:54 UTC) to sdrifter@soest.hawaii.edu 14:07:43 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:468 calls_made:1 call_cycle:0 14:07:43 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:07:43 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:468 calls_made:1 call_cycle:0 14:07:43 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:07:43 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:468 calls_made:1 call_cycle:0 14:07:43 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:07:43 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:468 calls_made:1 call_cycle:0 14:07:43 28 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:07:43 28 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:07:51 28 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:07:52 28 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:07:52 28 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 14:07:52 28 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:07:52 28 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:07:52 28 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 14:07:55 28 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0468lz 14:07:55 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0468lz.x00 14:07:55 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0468lz.x01 14:07:55 28 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0468lz.r in process_file_group 14:07:55 28 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260468.log 14:07:55 28 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 14:07:55 28 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0468dz 14:07:55 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0468dz.x00 14:07:55 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0468dz.x01 14:07:55 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0468dz.x02 14:07:55 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0468dz.x03 14:07:55 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0468dz.x04 14:07:55 28 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0468dz.r in process_file_group 14:07:56 28 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [468] 14:07:56 28 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [468] 14:07:56 28 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260468) for profiles 14:07:56 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 14:07:56 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/709) 707:709 to QC_BAD because CT out of water 14:07:56 28 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.115m) 14:07:56 28 Mar 2017 UTC: INFO: QC.py(365): Changed (7/709) 2 3 273 275 281 287 708 to QC_PROBABLY_BAD because raw temperature spikes 14:07:56 28 Mar 2017 UTC: INFO: QC.py(377): Changed (1/709) 709 to QC_BAD because raw salinity below bound 14:07:56 28 Mar 2017 UTC: INFO: QC.py(408): Changed (2/709) 273 287 to QC_PROBABLY_BAD because raw conductivity spikes 14:07:56 28 Mar 2017 UTC: INFO: QC.py(180): Changed (7/709) 2 3 273 275 281 287 708 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:07:56 28 Mar 2017 UTC: INFO: QC.py(180): Changed (2/709) 707 708 to QC_BAD because changed raw cond implies changed raw salinity 14:07:56 28 Mar 2017 UTC: INFO: QC.py(365): Changed (7/709) 2 3 273 275 281 287 708 to QC_INTERPOLATED because temperature spikes 14:07:56 28 Mar 2017 UTC: INFO: QC.py(377): Changed (1/709) 709 to QC_BAD because salinity below bound 14:07:56 28 Mar 2017 UTC: INFO: QC.py(408): Changed (2/709) 273 287 to QC_INTERPOLATED because conductivity spikes 14:07:56 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/709) 279:283 to QC_BAD because slow apogee CT flow 14:07:56 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/709) 1:6 to QC_BAD because prior to dive start 14:07:56 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/709) 706 to QC_BAD because end of climb 14:07:56 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/709) 1:6 279:283 706:709 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:07:56 28 Mar 2017 UTC: INFO: QC.py(180): Changed (15/709) 1:6 279:283 706:709 to QC_BAD because changed corrected salin implies changed speed 14:07:57 28 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:07:57 28 Mar 2017 UTC: INFO: QC.py(180): Changed (3/709) 273 275 287 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 14:07:57 28 Mar 2017 UTC: INFO: QC.py(180): Changed (3/709) 273 275 287 to QC_INTERPOLATED because changed corrected temp implies changed speed 14:07:57 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.24 cm/s 14:07:57 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.22 cm/s 14:07:57 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:07:57 28 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (206/709) 153:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:07:57 28 Mar 2017 UTC: INFO: QC.py(180): Changed (4/709) 2 3 281 708 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 14:07:57 28 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (206/709) 153:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 14:07:57 28 Mar 2017 UTC: INFO: QC.py(180): Changed (4/709) 2 3 281 708 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 14:07:57 28 Mar 2017 UTC: INFO: QC.py(180): Changed (15/709) 1:6 279:283 706:709 to QC_BAD because changed salinity implies changed optode oxygen 14:07:57 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:07:57 28 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:07:57 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 14:07:57 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 468: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.12% reduction 14:07:57 28 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.468 14:07:57 28 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:07:57 28 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:07:57 28 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:07:58 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 14:07:58 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 14:11:55 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 14:11:57 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 14:11:57 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 14:12:48 28 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:12:48 28 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:12:48 28 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:12:48 28 Mar 2017 UTC /home/sg626/p6260468.log /home/sg626/p6260468.eng /home/sg626/p6260468.asc /home/sg626/p6260468.pro /home/sg626/p6260468.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 14:12:48 28 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:12:48 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:12:48 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:12:48 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:12:48 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:12:48 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:12:48 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:12:48 28 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:12:48 28 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:12:48 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:12:48 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:12:48 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:12:48 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:12:48 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:12:48 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:12:48 28 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:12:48 28 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:12:48 28 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:12:48 28 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:12:48 28 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:12:48 28 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:12:48 28 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:12:48 28 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:12:48 28 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 14:12:48 28 Mar 2017 UTC 18:05:48 28 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 15900 18:05:48 28 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 18:09:01 28 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 16029 18:09:01 28 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:09:01 28 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 18:09:01 28 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 18:09:01 28 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:09:01 28 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170328080901 ] 18:09:01 28 Mar 2017 UTC: INFO: Base.py(1333): PID:16036 18:09:01 28 Mar 2017 UTC: INFO: Base.py(1375): Started processing 18:09:01 28 Mar 2017 UTC 18:09:01 28 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 18:09:03 28 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 18:09:03 28 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:09:03 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:09:03 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:469 calls_made:1 call_cycle:0 18:09:03 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:09:03 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:469 calls_made:1 call_cycle:0 18:09:03 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:09:03 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:469 calls_made:1 call_cycle:0 18:09:03 28 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:469 calls_made:1 call_cycle:0 2238.0860 -15801.1740 03/28/17 18:03:25 UTC) to sdrifter@soest.hawaii.edu 18:09:03 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:469 calls_made:1 call_cycle:0 18:09:03 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:09:03 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:469 calls_made:1 call_cycle:0 18:09:03 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:09:03 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:469 calls_made:1 call_cycle:0 18:09:03 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:09:03 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:469 calls_made:1 call_cycle:0 18:09:03 28 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:09:03 28 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:09:10 28 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:09:11 28 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:09:11 28 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 18:09:11 28 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:09:12 28 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:09:12 28 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 18:09:15 28 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0469lz 18:09:15 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0469lz.x00 18:09:15 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0469lz.x01 18:09:15 28 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0469lz.r in process_file_group 18:09:15 28 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260469.log 18:09:15 28 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 18:09:15 28 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0469dz 18:09:15 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0469dz.x00 18:09:15 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0469dz.x01 18:09:15 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0469dz.x02 18:09:15 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0469dz.x03 18:09:15 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0469dz.x04 18:09:15 28 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0469dz.r in process_file_group 18:09:15 28 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [469] 18:09:15 28 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [469] 18:09:16 28 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260469) for profiles 18:09:16 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 18:09:16 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/740) 739 to QC_BAD because CT out of water 18:09:16 28 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.092m) 18:09:16 28 Mar 2017 UTC: INFO: QC.py(365): Changed (1/740) 275 to QC_PROBABLY_BAD because raw temperature spikes 18:09:16 28 Mar 2017 UTC: INFO: QC.py(377): Changed (2/740) 739 740 to QC_BAD because raw salinity below bound 18:09:16 28 Mar 2017 UTC: INFO: QC.py(388): Changed (1/740) 740 to QC_BAD because bad raw salinity indicates raw conductivity issues 18:09:16 28 Mar 2017 UTC: INFO: QC.py(180): Changed (1/740) 275 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 18:09:16 28 Mar 2017 UTC: INFO: QC.py(365): Changed (1/740) 275 to QC_INTERPOLATED because temperature spikes 18:09:16 28 Mar 2017 UTC: INFO: QC.py(377): Changed (2/740) 739 740 to QC_BAD because salinity below bound 18:09:16 28 Mar 2017 UTC: INFO: QC.py(388): Changed (1/740) 740 to QC_BAD because bad salinity indicates conductivity issues 18:09:16 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/740) 273:277 to QC_BAD because slow apogee CT flow 18:09:16 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/740) 1:6 to QC_BAD because prior to dive start 18:09:16 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/740) 738 to QC_BAD because end of climb 18:09:16 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/740) 1:6 273:277 738:740 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 18:09:16 28 Mar 2017 UTC: INFO: QC.py(180): Changed (14/740) 1:6 273:277 738:740 to QC_BAD because changed corrected salin implies changed speed 18:09:17 28 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 18:09:17 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.05 cm/s 18:09:17 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.03 cm/s 18:09:17 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 18:09:17 28 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (205/740) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 18:09:17 28 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (205/740) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 18:09:17 28 Mar 2017 UTC: INFO: QC.py(180): Changed (14/740) 1:6 273:277 738:740 to QC_BAD because changed salinity implies changed optode oxygen 18:09:17 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 18:09:17 28 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 18:09:17 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 18:09:17 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 469: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.89% reduction 18:09:17 28 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.469 18:09:17 28 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:09:17 28 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:09:17 28 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:09:17 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 18:09:17 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 18:13:17 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 18:13:18 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 18:13:18 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 18:14:09 28 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:14:09 28 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:14:09 28 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:14:09 28 Mar 2017 UTC /home/sg626/p6260469.log /home/sg626/p6260469.eng /home/sg626/p6260469.asc /home/sg626/p6260469.pro /home/sg626/p6260469.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 18:14:09 28 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:14:09 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:14:09 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:14:09 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:14:09 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:14:09 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:14:09 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:14:09 28 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:14:09 28 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:14:09 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:14:09 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:14:09 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:14:09 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:14:09 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:14:09 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:14:09 28 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:14:09 28 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 18:14:09 28 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 18:14:09 28 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 18:14:09 28 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 18:14:09 28 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:14:09 28 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:14:09 28 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:14:09 28 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 18:14:09 28 Mar 2017 UTC 22:08:19 28 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 22704 22:08:19 28 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 22:12:07 28 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 23002 22:12:07 28 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:12:07 28 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:12:07 28 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:12:07 28 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:12:07 28 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170328121207 ] 22:12:07 28 Mar 2017 UTC: INFO: Base.py(1333): PID:23010 22:12:07 28 Mar 2017 UTC: INFO: Base.py(1375): Started processing 22:12:07 28 Mar 2017 UTC 22:12:07 28 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:12:09 28 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:12:09 28 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:12:09 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:12:09 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:470 calls_made:1 call_cycle:0 22:12:09 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:12:09 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:470 calls_made:1 call_cycle:0 22:12:09 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:12:09 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:470 calls_made:1 call_cycle:0 22:12:09 28 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:470 calls_made:1 call_cycle:0 2238.8650 -15801.1800 03/28/17 22:05:56 UTC) to sdrifter@soest.hawaii.edu 22:12:09 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:470 calls_made:1 call_cycle:0 22:12:09 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:12:09 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:470 calls_made:1 call_cycle:0 22:12:09 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:12:09 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:470 calls_made:1 call_cycle:0 22:12:09 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:12:09 28 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:470 calls_made:1 call_cycle:0 22:12:09 28 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:12:09 28 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:12:16 28 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:12:17 28 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:12:17 28 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:12:17 28 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:12:17 28 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:12:17 28 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:12:21 28 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0470lz 22:12:21 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0470lz.x00 22:12:21 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0470lz.x01 22:12:21 28 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0470lz.r in process_file_group 22:12:21 28 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260470.log 22:12:21 28 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 22:12:21 28 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0470dz 22:12:21 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0470dz.x00 22:12:21 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0470dz.x01 22:12:21 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0470dz.x02 22:12:21 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0470dz.x03 22:12:21 28 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0470dz.x04 22:12:21 28 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0470dz.r in process_file_group 22:12:21 28 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [470] 22:12:21 28 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [470] 22:12:21 28 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260470) for profiles 22:12:21 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 22:12:22 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/734) 732 to QC_BAD because CT out of water 22:12:22 28 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.002m) 22:12:22 28 Mar 2017 UTC: INFO: QC.py(365): Changed (3/734) 21 289 732 to QC_PROBABLY_BAD because raw temperature spikes 22:12:22 28 Mar 2017 UTC: INFO: QC.py(377): Changed (1/734) 734 to QC_BAD because raw salinity below bound 22:12:22 28 Mar 2017 UTC: INFO: QC.py(388): Changed (1/734) 734 to QC_BAD because bad raw salinity indicates raw conductivity issues 22:12:22 28 Mar 2017 UTC: INFO: QC.py(408): Changed (1/734) 666 to QC_PROBABLY_BAD because raw conductivity spikes 22:12:22 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/734) 733 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 22:12:22 28 Mar 2017 UTC: INFO: QC.py(180): Changed (3/734) 21 289 732 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 22:12:22 28 Mar 2017 UTC: INFO: QC.py(180): Changed (1/734) 666 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 22:12:22 28 Mar 2017 UTC: INFO: QC.py(180): Changed (2/734) 732 733 to QC_BAD because changed raw cond implies changed raw salinity 22:12:22 28 Mar 2017 UTC: INFO: QC.py(365): Changed (3/734) 21 289 732 to QC_INTERPOLATED because temperature spikes 22:12:22 28 Mar 2017 UTC: INFO: QC.py(377): Changed (1/734) 734 to QC_BAD because salinity below bound 22:12:22 28 Mar 2017 UTC: INFO: QC.py(388): Changed (1/734) 734 to QC_BAD because bad salinity indicates conductivity issues 22:12:22 28 Mar 2017 UTC: INFO: QC.py(408): Changed (1/734) 666 to QC_INTERPOLATED because conductivity spikes 22:12:22 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/734) 733 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 22:12:22 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/734) 287:291 to QC_BAD because slow apogee CT flow 22:12:22 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/734) 1:6 to QC_BAD because prior to dive start 22:12:22 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/734) 1:6 287:291 732:734 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:12:22 28 Mar 2017 UTC: INFO: QC.py(180): Changed (14/734) 1:6 287:291 732:734 to QC_BAD because changed corrected salin implies changed speed 22:12:22 28 Mar 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 731 22:12:22 28 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:12:22 28 Mar 2017 UTC: INFO: QC.py(180): Changed (1/734) 21 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 22:12:22 28 Mar 2017 UTC: INFO: QC.py(180): Changed (1/734) 666 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 22:12:22 28 Mar 2017 UTC: INFO: QC.py(180): Changed (1/734) 21 to QC_INTERPOLATED because changed corrected temp implies changed speed 22:12:22 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.49 cm/s 22:12:22 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.14 cm/s 22:12:22 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:12:22 28 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (209/734) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:12:22 28 Mar 2017 UTC: INFO: QC.py(180): Changed (2/734) 21 732 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 22:12:22 28 Mar 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/734) 731 to QC_BAD because slow flow in SBE43 22:12:22 28 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (209/734) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 22:12:22 28 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/734) 728 729 to QC_BAD because bad aa4330 oyxgen 22:12:22 28 Mar 2017 UTC: INFO: QC.py(180): Changed (2/734) 21 732 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 22:12:22 28 Mar 2017 UTC: INFO: QC.py(180): Changed (14/734) 1:6 287:291 732:734 to QC_BAD because changed salinity implies changed optode oxygen 22:12:22 28 Mar 2017 UTC: INFO: QC.py(180): Changed (1/734) 666 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 22:12:22 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:12:22 28 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 22:12:22 28 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 22:12:23 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 470: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.91% reduction 22:12:23 28 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.470 22:12:23 28 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.470 22:12:23 28 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:12:23 28 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:12:23 28 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:12:23 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 22:12:23 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 22:16:22 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 22:16:24 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 22:16:24 28 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 22:17:15 28 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:17:15 28 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:17:15 28 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:17:15 28 Mar 2017 UTC /home/sg626/p6260470.log /home/sg626/p6260470.eng /home/sg626/p6260470.asc /home/sg626/p6260470.pro /home/sg626/p6260470.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 22:17:15 28 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:17:15 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:17:15 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:17:15 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:17:15 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:17:15 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:17:15 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:17:15 28 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:17:15 28 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:17:15 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:17:15 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:17:15 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:17:15 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:17:15 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:17:15 28 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:17:15 28 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:17:15 28 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:17:15 28 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:17:15 28 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:17:15 28 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:17:15 28 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:17:15 28 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:17:15 28 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:17:15 28 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 22:17:15 28 Mar 2017 UTC 02:02:18 29 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 29423 02:02:18 29 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:05:27 29 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 29552 02:05:27 29 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:05:27 29 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:05:27 29 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:05:27 29 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:05:27 29 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170328160526 ] 02:05:27 29 Mar 2017 UTC: INFO: Base.py(1333): PID:29560 02:05:27 29 Mar 2017 UTC: INFO: Base.py(1375): Started processing 02:05:27 29 Mar 2017 UTC 02:05:27 29 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:05:28 29 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:05:28 29 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:05:28 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:05:28 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:471 calls_made:1 call_cycle:0 02:05:28 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:05:28 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:471 calls_made:1 call_cycle:0 02:05:28 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:05:28 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:471 calls_made:1 call_cycle:0 02:05:28 29 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:471 calls_made:1 call_cycle:0 2236.8330 -15801.9560 03/29/17 02:00:00 UTC) to sdrifter@soest.hawaii.edu 02:05:28 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:471 calls_made:1 call_cycle:0 02:05:28 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:05:28 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:471 calls_made:1 call_cycle:0 02:05:28 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:05:28 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:471 calls_made:1 call_cycle:0 02:05:28 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:05:28 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:471 calls_made:1 call_cycle:0 02:05:28 29 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:05:28 29 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:05:36 29 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:05:37 29 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:05:37 29 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:05:37 29 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:05:37 29 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:05:37 29 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:05:40 29 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0471lz 02:05:40 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0471lz.x00 02:05:40 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0471lz.x01 02:05:40 29 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0471lz.r in process_file_group 02:05:40 29 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260471.log 02:05:40 29 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 02:05:40 29 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0471dz 02:05:40 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0471dz.x00 02:05:40 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0471dz.x01 02:05:40 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0471dz.x02 02:05:40 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0471dz.x03 02:05:40 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0471dz.x04 02:05:40 29 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0471dz.r in process_file_group 02:05:41 29 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [471] 02:05:41 29 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [471] 02:05:41 29 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260471) for profiles 02:05:41 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 02:05:41 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/703) 701 702 to QC_BAD because CT out of water 02:05:41 29 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.057m) 02:05:41 29 Mar 2017 UTC: INFO: QC.py(365): Changed (7/703) 3 4 645 679 700:702 to QC_PROBABLY_BAD because raw temperature spikes 02:05:41 29 Mar 2017 UTC: INFO: QC.py(408): Changed (2/703) 3 532 to QC_PROBABLY_BAD because raw conductivity spikes 02:05:41 29 Mar 2017 UTC: INFO: QC.py(180): Changed (7/703) 3 4 645 679 700:702 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:05:41 29 Mar 2017 UTC: INFO: QC.py(180): Changed (1/703) 532 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 02:05:41 29 Mar 2017 UTC: INFO: QC.py(180): Changed (2/703) 701 702 to QC_BAD because changed raw cond implies changed raw salinity 02:05:41 29 Mar 2017 UTC: INFO: QC.py(365): Changed (7/703) 3 4 645 679 700:702 to QC_INTERPOLATED because temperature spikes 02:05:41 29 Mar 2017 UTC: INFO: QC.py(408): Changed (2/703) 3 532 to QC_INTERPOLATED because conductivity spikes 02:05:41 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/703) 264:268 to QC_BAD because slow apogee CT flow 02:05:41 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/703) 1:6 to QC_BAD because prior to dive start 02:05:41 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (3/703) 699 700 703 to QC_BAD because end of climb 02:05:41 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/703) 1:6 264:268 699:703 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:05:41 29 Mar 2017 UTC: INFO: QC.py(180): Changed (16/703) 1:6 264:268 699:703 to QC_BAD because changed corrected salin implies changed speed 02:05:42 29 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:05:42 29 Mar 2017 UTC: INFO: QC.py(180): Changed (2/703) 645 679 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 02:05:42 29 Mar 2017 UTC: INFO: QC.py(180): Changed (1/703) 532 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 02:05:42 29 Mar 2017 UTC: INFO: QC.py(180): Changed (2/703) 645 679 to QC_INTERPOLATED because changed corrected temp implies changed speed 02:05:42 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.79 cm/s 02:05:42 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.27 cm/s 02:05:42 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:05:42 29 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (198/703) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:05:42 29 Mar 2017 UTC: INFO: QC.py(180): Changed (7/703) 3 4 645 679 700:702 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:05:42 29 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (198/703) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 02:05:42 29 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/703) 3 to QC_BAD because bad aa4330 oyxgen 02:05:42 29 Mar 2017 UTC: INFO: QC.py(180): Changed (6/703) 4 645 679 700:702 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:05:42 29 Mar 2017 UTC: INFO: QC.py(180): Changed (15/703) 1 2 4:6 264:268 699:703 to QC_BAD because changed salinity implies changed optode oxygen 02:05:42 29 Mar 2017 UTC: INFO: QC.py(180): Changed (1/703) 532 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 02:05:42 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:05:42 29 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:05:42 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 02:05:43 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 471: Data set size for profile, binned and kkyy files reduced by 16 points, a 2.28% reduction 02:05:43 29 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.471 02:05:43 29 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:05:43 29 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:05:43 29 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:05:43 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 02:05:43 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 02:09:41 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 02:09:42 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 02:09:42 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 02:10:34 29 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:10:34 29 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:10:34 29 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:10:34 29 Mar 2017 UTC /home/sg626/p6260471.log /home/sg626/p6260471.eng /home/sg626/p6260471.asc /home/sg626/p6260471.pro /home/sg626/p6260471.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 02:10:34 29 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:10:34 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:10:34 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:10:34 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:10:34 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:10:34 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:10:34 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:10:34 29 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:10:34 29 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:10:34 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:10:34 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:10:34 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:10:34 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:10:34 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:10:34 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:10:34 29 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:10:34 29 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:10:34 29 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:10:34 29 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:10:34 29 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:10:34 29 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:10:34 29 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:10:34 29 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:10:34 29 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 02:10:34 29 Mar 2017 UTC 05:59:52 29 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 2997 05:59:52 29 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:03:10 29 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 3305 06:03:10 29 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:03:10 29 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 06:03:10 29 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 06:03:10 29 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:03:10 29 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170328200310 ] 06:03:10 29 Mar 2017 UTC: INFO: Base.py(1333): PID:3312 06:03:10 29 Mar 2017 UTC: INFO: Base.py(1375): Started processing 06:03:10 29 Mar 2017 UTC 06:03:10 29 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 06:03:12 29 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 06:03:12 29 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:03:12 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:03:12 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:472 calls_made:1 call_cycle:0 06:03:12 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:03:12 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:472 calls_made:1 call_cycle:0 06:03:12 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:03:12 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:472 calls_made:1 call_cycle:0 06:03:12 29 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:472 calls_made:1 call_cycle:0 2237.5580 -15802.1630 03/29/17 05:57:31 UTC) to sdrifter@soest.hawaii.edu 06:03:12 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:472 calls_made:1 call_cycle:0 06:03:12 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:03:12 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:472 calls_made:1 call_cycle:0 06:03:12 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:03:12 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:472 calls_made:1 call_cycle:0 06:03:12 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:03:12 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:472 calls_made:1 call_cycle:0 06:03:12 29 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:03:12 29 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:03:19 29 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:03:21 29 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:03:21 29 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 06:03:21 29 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:03:21 29 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:03:21 29 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 06:03:24 29 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0472lz 06:03:24 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0472lz.x00 06:03:24 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0472lz.x01 06:03:24 29 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0472lz.r in process_file_group 06:03:24 29 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260472.log 06:03:24 29 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 06:03:24 29 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0472dz 06:03:24 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0472dz.x00 06:03:24 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0472dz.x01 06:03:24 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0472dz.x02 06:03:24 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0472dz.x03 06:03:24 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0472dz.x04 06:03:24 29 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0472dz.r in process_file_group 06:03:25 29 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [472] 06:03:25 29 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [472] 06:03:25 29 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260472) for profiles 06:03:25 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 06:03:25 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/704) 701 702 704 to QC_BAD because CT out of water 06:03:25 29 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.080m) 06:03:25 29 Mar 2017 UTC: INFO: QC.py(365): Changed (2/704) 2 703 to QC_PROBABLY_BAD because raw temperature spikes 06:03:25 29 Mar 2017 UTC: INFO: QC.py(377): Changed (3/704) 701:703 to QC_BAD because raw salinity below bound 06:03:25 29 Mar 2017 UTC: INFO: QC.py(180): Changed (1/704) 2 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 06:03:25 29 Mar 2017 UTC: INFO: QC.py(180): Changed (1/704) 704 to QC_BAD because changed raw cond implies changed raw salinity 06:03:25 29 Mar 2017 UTC: INFO: QC.py(365): Changed (2/704) 2 703 to QC_INTERPOLATED because temperature spikes 06:03:25 29 Mar 2017 UTC: INFO: QC.py(377): Changed (3/704) 701:703 to QC_BAD because salinity below bound 06:03:25 29 Mar 2017 UTC: INFO: QC.py(388): Changed (1/704) 703 to QC_BAD because bad salinity indicates conductivity issues 06:03:25 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/704) 264:268 to QC_BAD because slow apogee CT flow 06:03:25 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/704) 1:6 to QC_BAD because prior to dive start 06:03:25 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/704) 1:6 264:268 701:704 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 06:03:25 29 Mar 2017 UTC: INFO: QC.py(180): Changed (15/704) 1:6 264:268 701:704 to QC_BAD because changed corrected salin implies changed speed 06:03:26 29 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 06:03:26 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.94 cm/s 06:03:26 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.33 cm/s 06:03:26 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 06:03:26 29 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (208/704) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 06:03:26 29 Mar 2017 UTC: INFO: QC.py(180): Changed (2/704) 2 703 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 06:03:26 29 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (208/704) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 06:03:26 29 Mar 2017 UTC: INFO: QC.py(180): Changed (2/704) 2 703 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 06:03:26 29 Mar 2017 UTC: INFO: QC.py(180): Changed (15/704) 1:6 264:268 701:704 to QC_BAD because changed salinity implies changed optode oxygen 06:03:26 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 06:03:26 29 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 06:03:26 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 06:03:26 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 472: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.13% reduction 06:03:27 29 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.472 06:03:27 29 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:03:27 29 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:03:27 29 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:03:27 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 06:03:27 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 06:07:25 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 06:07:27 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 06:07:27 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 06:08:18 29 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:08:18 29 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:08:18 29 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 06:08:18 29 Mar 2017 UTC /home/sg626/p6260472.log /home/sg626/p6260472.eng /home/sg626/p6260472.asc /home/sg626/p6260472.pro /home/sg626/p6260472.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 06:08:18 29 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:08:18 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:08:18 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:08:18 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:08:18 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:08:18 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:08:18 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:08:18 29 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:08:18 29 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:08:18 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:08:18 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:08:18 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:08:18 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:08:18 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:08:18 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:08:18 29 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:08:18 29 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 06:08:18 29 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 06:08:18 29 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 06:08:18 29 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 06:08:18 29 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:08:18 29 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:08:18 29 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:08:18 29 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 06:08:18 29 Mar 2017 UTC 09:59:24 29 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9467 09:59:24 29 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:01:03 29 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9761 10:01:03 29 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:01:03 29 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:01:03 29 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:01:03 29 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:01:03 29 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170329000103 ] 10:01:03 29 Mar 2017 UTC: INFO: Base.py(1333): PID:9768 10:01:03 29 Mar 2017 UTC: INFO: Base.py(1375): Started processing 10:01:03 29 Mar 2017 UTC 10:01:03 29 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:01:05 29 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:01:05 29 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:01:05 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:01:05 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:473 calls_made:1 call_cycle:0 10:01:05 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:01:05 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:473 calls_made:1 call_cycle:0 10:01:05 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:01:05 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:473 calls_made:1 call_cycle:0 10:01:05 29 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:473 calls_made:1 call_cycle:0 2237.5950 -15800.7120 03/29/17 09:57:00 UTC) to sdrifter@soest.hawaii.edu 10:01:05 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:473 calls_made:1 call_cycle:0 10:01:05 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:01:05 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:473 calls_made:1 call_cycle:0 10:01:05 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:01:05 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:473 calls_made:1 call_cycle:0 10:01:05 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:01:05 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:473 calls_made:1 call_cycle:0 10:01:05 29 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:01:05 29 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:01:12 29 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:01:14 29 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:01:14 29 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:01:14 29 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:01:14 29 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:01:14 29 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:01:17 29 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0473lz 10:01:17 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0473lz.x00 10:01:17 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0473lz.x01 10:01:17 29 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0473lz.r in process_file_group 10:01:17 29 Mar 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0473lz.r - expected 0x4143316714, generated 0xe8c2c7a3 10:01:17 29 Mar 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0473lz.r - expected 0xf1f3f547, generated 0x4076 10:01:17 29 Mar 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0473lz.r - skipping 10:01:17 29 Mar 2017 UTC: ERROR: Base.py(243): Could not process sg0473lz - skipping 10:01:17 29 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:01:17 29 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0473lz 10:01:17 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0473lz.x00 10:01:17 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0473lz.x01 10:01:17 29 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0473lz.r in process_file_group 10:01:17 29 Mar 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0473lz.r - expected 0x4143316714, generated 0xe8c2c7a3 10:01:17 29 Mar 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0473lz.r - expected 0xf1f3f547, generated 0x4076 10:01:17 29 Mar 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0473lz.r - skipping 10:01:17 29 Mar 2017 UTC: ERROR: Base.py(272): Could not process sg0473lz - skipping 10:01:17 29 Mar 2017 UTC: WARNING: Base.py(1624): No dives to process 10:01:17 29 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [] 10:01:17 29 Mar 2017 UTC: INFO: Base.py(1780): No dives found to profile 10:01:17 29 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.473 10:01:17 29 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:01:17 29 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:01:17 29 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:01:18 29 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:01:18 29 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:01:18 29 Mar 2017 UTC: ERROR: Base.py(1960): Dive [473] failed to process completely. The following files were not processed completely: /home/sg626/sg0473lz.r Glider logout not seen - retransmissions from glider possible Consult baselog_170329000103 for details. 10:01:18 29 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:01:18 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:01:18 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:01:18 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:01:18 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:01:18 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:01:18 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:01:18 29 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:01:18 29 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:01:18 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:01:18 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:01:18 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:01:18 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:01:18 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:01:18 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:01:18 29 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:01:18 29 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:01:18 29 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:01:18 29 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:01:18 29 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:01:18 29 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:01:18 29 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:01:18 29 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:01:18 29 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 10:01:18 29 Mar 2017 UTC 10:03:24 29 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 10011 10:03:24 29 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:06:14 29 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 10136 10:06:14 29 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:06:14 29 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:06:14 29 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:06:14 29 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:06:14 29 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170329000614 ] 10:06:14 29 Mar 2017 UTC: INFO: Base.py(1333): PID:10143 10:06:15 29 Mar 2017 UTC: INFO: Base.py(1375): Started processing 10:06:15 29 Mar 2017 UTC 10:06:15 29 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:06:16 29 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:06:16 29 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:06:16 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:06:16 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:473 calls_made:2 call_cycle:0 10:06:16 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:06:16 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:473 calls_made:2 call_cycle:0 10:06:16 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:06:16 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:473 calls_made:2 call_cycle:0 10:06:16 29 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:473 calls_made:2 call_cycle:0 2237.5950 -15800.7120 03/29/17 09:57:00 UTC) to sdrifter@soest.hawaii.edu 10:06:16 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:473 calls_made:2 call_cycle:0 10:06:16 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:06:16 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:473 calls_made:2 call_cycle:0 10:06:16 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:06:16 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:473 calls_made:2 call_cycle:0 10:06:16 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:06:16 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:473 calls_made:2 call_cycle:0 10:06:16 29 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:06:16 29 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:06:23 29 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:06:25 29 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:06:25 29 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:06:25 29 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:06:25 29 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:06:25 29 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:06:29 29 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0473lz 10:06:29 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0473lz.x00 10:06:29 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0473lz.x01 10:06:29 29 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0473lz.r in process_file_group 10:06:29 29 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260473.log 10:06:29 29 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:06:29 29 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0473dz 10:06:29 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0473dz.x00 10:06:29 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0473dz.x01 10:06:29 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0473dz.x02 10:06:29 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0473dz.x03 10:06:29 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0473dz.x04 10:06:29 29 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0473dz.r in process_file_group 10:06:29 29 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [473] 10:06:29 29 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [473] 10:06:29 29 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260473) for profiles 10:06:29 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 10:06:29 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/687) 686 687 to QC_BAD because CT out of water 10:06:29 29 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.120m) 10:06:29 29 Mar 2017 UTC: INFO: QC.py(365): Changed (2/687) 2 274 to QC_PROBABLY_BAD because raw temperature spikes 10:06:29 29 Mar 2017 UTC: INFO: QC.py(377): Changed (1/687) 687 to QC_BAD because raw salinity below bound 10:06:29 29 Mar 2017 UTC: INFO: QC.py(408): Changed (1/687) 274 to QC_PROBABLY_BAD because raw conductivity spikes 10:06:29 29 Mar 2017 UTC: INFO: QC.py(180): Changed (2/687) 2 274 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 10:06:29 29 Mar 2017 UTC: INFO: QC.py(180): Changed (1/687) 686 to QC_BAD because changed raw cond implies changed raw salinity 10:06:29 29 Mar 2017 UTC: INFO: QC.py(365): Changed (2/687) 2 274 to QC_INTERPOLATED because temperature spikes 10:06:29 29 Mar 2017 UTC: INFO: QC.py(377): Changed (1/687) 687 to QC_BAD because salinity below bound 10:06:29 29 Mar 2017 UTC: INFO: QC.py(408): Changed (1/687) 274 to QC_INTERPOLATED because conductivity spikes 10:06:29 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/687) 282:286 to QC_BAD because slow apogee CT flow 10:06:29 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/687) 1:6 to QC_BAD because prior to dive start 10:06:29 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/687) 685 to QC_BAD because end of climb 10:06:29 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/687) 1:6 282:286 685:687 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:06:29 29 Mar 2017 UTC: INFO: QC.py(180): Changed (14/687) 1:6 282:286 685:687 to QC_BAD because changed corrected salin implies changed speed 10:06:30 29 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 10:06:30 29 Mar 2017 UTC: INFO: QC.py(180): Changed (1/687) 274 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 10:06:30 29 Mar 2017 UTC: INFO: QC.py(180): Changed (1/687) 274 to QC_INTERPOLATED because changed corrected temp implies changed speed 10:06:30 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.35 cm/s 10:06:30 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.25 cm/s 10:06:30 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:06:30 29 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (206/687) 159 160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:06:30 29 Mar 2017 UTC: INFO: QC.py(180): Changed (1/687) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 10:06:30 29 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (206/687) 159 160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 10:06:30 29 Mar 2017 UTC: INFO: QC.py(180): Changed (1/687) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 10:06:30 29 Mar 2017 UTC: INFO: QC.py(180): Changed (14/687) 1:6 282:286 685:687 to QC_BAD because changed salinity implies changed optode oxygen 10:06:30 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:06:30 29 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:06:30 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 10:06:31 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 473: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.04% reduction 10:06:31 29 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.473 10:06:31 29 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:06:31 29 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:06:31 29 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:06:31 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 10:06:31 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 10:10:28 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 10:10:30 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 10:10:30 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 10:11:21 29 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:11:21 29 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:11:21 29 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 10:11:21 29 Mar 2017 UTC /home/sg626/p6260473.log /home/sg626/p6260473.eng /home/sg626/p6260473.asc /home/sg626/p6260473.pro /home/sg626/p6260473.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 10:11:21 29 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:11:21 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:11:21 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:11:21 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:11:21 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:11:21 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:11:21 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:11:21 29 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:11:21 29 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:11:21 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:11:21 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:11:21 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:11:21 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:11:21 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:11:21 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:11:21 29 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:11:21 29 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:11:21 29 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:11:21 29 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:11:21 29 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:11:21 29 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:11:21 29 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:11:21 29 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:11:21 29 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 10:11:21 29 Mar 2017 UTC 14:12:15 29 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 16832 14:12:15 29 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:15:38 29 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 16958 14:15:38 29 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:15:38 29 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 14:15:38 29 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 14:15:38 29 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:15:38 29 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170329041537 ] 14:15:38 29 Mar 2017 UTC: INFO: Base.py(1333): PID:16966 14:15:38 29 Mar 2017 UTC: INFO: Base.py(1375): Started processing 14:15:38 29 Mar 2017 UTC 14:15:38 29 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 14:15:39 29 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 14:15:39 29 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:15:39 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:15:39 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:474 calls_made:1 call_cycle:0 14:15:39 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:15:39 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:474 calls_made:1 call_cycle:0 14:15:39 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:15:39 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:474 calls_made:1 call_cycle:0 14:15:39 29 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:474 calls_made:1 call_cycle:0 2237.5270 -15759.3050 03/29/17 14:09:54 UTC) to sdrifter@soest.hawaii.edu 14:15:39 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:474 calls_made:1 call_cycle:0 14:15:39 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:15:39 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:474 calls_made:1 call_cycle:0 14:15:39 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:15:39 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:474 calls_made:1 call_cycle:0 14:15:39 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:15:39 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:474 calls_made:1 call_cycle:0 14:15:39 29 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:15:39 29 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:15:47 29 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:15:48 29 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:15:48 29 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 14:15:48 29 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:15:48 29 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:15:48 29 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 14:15:52 29 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0474lz 14:15:52 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0474lz.x00 14:15:52 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0474lz.x01 14:15:52 29 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0474lz.r in process_file_group 14:15:52 29 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260474.log 14:15:52 29 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 14:15:52 29 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0474dz 14:15:52 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0474dz.x00 14:15:52 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0474dz.x01 14:15:52 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0474dz.x02 14:15:52 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0474dz.x03 14:15:52 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0474dz.x04 14:15:52 29 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0474dz.r in process_file_group 14:15:52 29 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [474] 14:15:52 29 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [474] 14:15:52 29 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260474) for profiles 14:15:52 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 14:15:53 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/739) 738 739 to QC_BAD because CT out of water 14:15:53 29 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.092m) 14:15:53 29 Mar 2017 UTC: INFO: QC.py(365): Changed (1/739) 300 to QC_PROBABLY_BAD because raw temperature spikes 14:15:53 29 Mar 2017 UTC: INFO: QC.py(377): Changed (1/739) 738 to QC_BAD because raw salinity below bound 14:15:53 29 Mar 2017 UTC: INFO: QC.py(180): Changed (1/739) 300 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:15:53 29 Mar 2017 UTC: INFO: QC.py(180): Changed (1/739) 739 to QC_BAD because changed raw cond implies changed raw salinity 14:15:53 29 Mar 2017 UTC: INFO: QC.py(365): Changed (1/739) 300 to QC_INTERPOLATED because temperature spikes 14:15:53 29 Mar 2017 UTC: INFO: QC.py(377): Changed (1/739) 738 to QC_BAD because salinity below bound 14:15:53 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/739) 298:302 to QC_BAD because slow apogee CT flow 14:15:53 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/739) 1:6 to QC_BAD because prior to dive start 14:15:53 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/739) 737 to QC_BAD because end of climb 14:15:53 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/739) 1:6 298:302 737:739 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:15:53 29 Mar 2017 UTC: INFO: QC.py(180): Changed (14/739) 1:6 298:302 737:739 to QC_BAD because changed corrected salin implies changed speed 14:15:53 29 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:15:53 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.86 cm/s 14:15:53 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.30 cm/s 14:15:53 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:15:53 29 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (216/739) 167:170 172:175 177:180 182:185 187:190 192:195 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:15:53 29 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (216/739) 167:170 172:175 177:180 182:185 187:190 192:195 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 14:15:53 29 Mar 2017 UTC: INFO: QC.py(180): Changed (14/739) 1:6 298:302 737:739 to QC_BAD because changed salinity implies changed optode oxygen 14:15:53 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:15:53 29 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:15:53 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 14:15:54 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 474: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.89% reduction 14:15:54 29 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.474 14:15:54 29 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:15:54 29 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:15:54 29 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:15:54 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 14:15:54 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 14:19:58 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 14:20:00 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 14:20:00 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 14:20:51 29 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:20:51 29 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:20:51 29 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:20:51 29 Mar 2017 UTC /home/sg626/p6260474.log /home/sg626/p6260474.eng /home/sg626/p6260474.asc /home/sg626/p6260474.pro /home/sg626/p6260474.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 14:20:51 29 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:20:51 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:20:51 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:20:51 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:20:51 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:20:51 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:20:51 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:20:51 29 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:20:51 29 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:20:51 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:20:51 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:20:51 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:20:51 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:20:51 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:20:51 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:20:51 29 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:20:51 29 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:20:51 29 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:20:51 29 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:20:51 29 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:20:51 29 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:20:51 29 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:20:51 29 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:20:51 29 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 14:20:51 29 Mar 2017 UTC 18:06:37 29 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 22993 18:06:37 29 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 18:09:49 29 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 23122 18:09:49 29 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:09:49 29 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 18:09:49 29 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 18:09:49 29 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:09:49 29 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170329080948 ] 18:09:49 29 Mar 2017 UTC: INFO: Base.py(1333): PID:23129 18:09:49 29 Mar 2017 UTC: INFO: Base.py(1375): Started processing 18:09:49 29 Mar 2017 UTC 18:09:49 29 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 18:09:50 29 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 18:09:50 29 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:09:50 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:09:50 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:475 calls_made:1 call_cycle:0 18:09:50 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:09:50 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:475 calls_made:1 call_cycle:0 18:09:50 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:09:50 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:475 calls_made:1 call_cycle:0 18:09:50 29 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:475 calls_made:1 call_cycle:0 2237.6690 -15757.8360 03/29/17 18:04:08 UTC) to sdrifter@soest.hawaii.edu 18:09:50 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:475 calls_made:1 call_cycle:0 18:09:50 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:09:50 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:475 calls_made:1 call_cycle:0 18:09:50 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:09:50 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:475 calls_made:1 call_cycle:0 18:09:50 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:09:50 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:475 calls_made:1 call_cycle:0 18:09:50 29 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:09:50 29 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:09:58 29 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:09:59 29 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:09:59 29 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 18:09:59 29 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:09:59 29 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:09:59 29 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 18:10:03 29 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0475lz 18:10:03 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0475lz.x00 18:10:03 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0475lz.x01 18:10:03 29 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0475lz.r in process_file_group 18:10:03 29 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260475.log 18:10:03 29 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 18:10:03 29 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0475dz 18:10:03 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0475dz.x00 18:10:03 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0475dz.x01 18:10:03 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0475dz.x02 18:10:03 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0475dz.x03 18:10:03 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0475dz.x04 18:10:03 29 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0475dz.r in process_file_group 18:10:04 29 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [475] 18:10:04 29 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [475] 18:10:04 29 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260475) for profiles 18:10:04 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 18:10:04 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/689) 688 to QC_BAD because CT out of water 18:10:04 29 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.019m) 18:10:04 29 Mar 2017 UTC: INFO: QC.py(365): Changed (2/689) 270 688 to QC_PROBABLY_BAD because raw temperature spikes 18:10:04 29 Mar 2017 UTC: INFO: QC.py(377): Changed (1/689) 688 to QC_BAD because raw salinity below bound 18:10:04 29 Mar 2017 UTC: INFO: QC.py(180): Changed (1/689) 270 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 18:10:04 29 Mar 2017 UTC: INFO: QC.py(365): Changed (2/689) 270 688 to QC_INTERPOLATED because temperature spikes 18:10:04 29 Mar 2017 UTC: INFO: QC.py(377): Changed (1/689) 688 to QC_BAD because salinity below bound 18:10:04 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/689) 268:272 to QC_BAD because slow apogee CT flow 18:10:04 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/689) 1:6 to QC_BAD because prior to dive start 18:10:04 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/689) 689 to QC_BAD because end of climb 18:10:04 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/689) 1:6 268:272 688 689 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 18:10:04 29 Mar 2017 UTC: INFO: QC.py(180): Changed (13/689) 1:6 268:272 688 689 to QC_BAD because changed corrected salin implies changed speed 18:10:04 29 Mar 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 687 18:10:05 29 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 18:10:05 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.67 cm/s 18:10:05 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.27 cm/s 18:10:05 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 18:10:05 29 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (204/689) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 18:10:05 29 Mar 2017 UTC: INFO: QC.py(180): Changed (1/689) 688 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 18:10:05 29 Mar 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/689) 687 to QC_BAD because slow flow in SBE43 18:10:05 29 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (204/689) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 18:10:05 29 Mar 2017 UTC: INFO: QC.py(180): Changed (1/689) 688 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 18:10:05 29 Mar 2017 UTC: INFO: QC.py(180): Changed (13/689) 1:6 268:272 688 689 to QC_BAD because changed salinity implies changed optode oxygen 18:10:05 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 18:10:05 29 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 18:10:05 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 18:10:05 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 475: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.89% reduction 18:10:05 29 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.475 18:10:05 29 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:10:05 29 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:10:05 29 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:10:06 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 18:10:06 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 18:14:08 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 18:14:10 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 18:14:10 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 18:15:02 29 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:15:02 29 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:15:02 29 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:15:02 29 Mar 2017 UTC /home/sg626/p6260475.log /home/sg626/p6260475.eng /home/sg626/p6260475.asc /home/sg626/p6260475.pro /home/sg626/p6260475.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 18:15:02 29 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:15:02 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:15:02 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:15:02 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:15:02 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:15:02 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:15:02 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:15:02 29 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:15:02 29 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:15:02 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:15:02 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:15:02 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:15:02 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:15:02 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:15:02 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:15:02 29 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:15:02 29 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 18:15:02 29 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 18:15:02 29 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 18:15:02 29 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 18:15:02 29 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:15:02 29 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:15:02 29 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:15:02 29 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 18:15:02 29 Mar 2017 UTC 22:14:54 29 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 29567 22:14:54 29 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 22:18:36 29 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 29706 22:18:36 29 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:18:36 29 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:18:36 29 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:18:36 29 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:18:36 29 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170329121836 ] 22:18:36 29 Mar 2017 UTC: INFO: Base.py(1333): PID:29714 22:18:36 29 Mar 2017 UTC: INFO: Base.py(1375): Started processing 22:18:36 29 Mar 2017 UTC 22:18:36 29 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:18:38 29 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:18:38 29 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:18:38 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:18:38 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:476 calls_made:2 call_cycle:0 22:18:38 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:18:38 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:476 calls_made:2 call_cycle:0 22:18:38 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:18:38 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:476 calls_made:2 call_cycle:0 22:18:38 29 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:476 calls_made:2 call_cycle:0 2238.1650 -15756.4070 03/29/17 22:10:48 UTC) to sdrifter@soest.hawaii.edu 22:18:38 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:476 calls_made:2 call_cycle:0 22:18:38 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:18:38 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:476 calls_made:2 call_cycle:0 22:18:38 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:18:38 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:476 calls_made:2 call_cycle:0 22:18:38 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:18:38 29 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:476 calls_made:2 call_cycle:0 22:18:38 29 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:18:38 29 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:18:45 29 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:18:46 29 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:18:46 29 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:18:46 29 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:18:47 29 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:18:47 29 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:18:50 29 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0476lz 22:18:50 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0476lz.x00 22:18:50 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0476lz.x01 22:18:50 29 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0476lz.r in process_file_group 22:18:50 29 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260476.log 22:18:50 29 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 22:18:50 29 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0476dz 22:18:50 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0476dz.x00 22:18:50 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0476dz.x01 22:18:50 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0476dz.x02 22:18:50 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0476dz.x03 22:18:50 29 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0476dz.x04 22:18:50 29 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0476dz.r in process_file_group 22:18:51 29 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [476] 22:18:51 29 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [476] 22:18:51 29 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260476) for profiles 22:18:51 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 22:18:51 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/728) 726:728 to QC_BAD because CT out of water 22:18:51 29 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.139m) 22:18:51 29 Mar 2017 UTC: INFO: QC.py(365): Changed (4/728) 2 278 283 288 to QC_PROBABLY_BAD because raw temperature spikes 22:18:51 29 Mar 2017 UTC: INFO: QC.py(377): Changed (1/728) 728 to QC_BAD because raw salinity below bound 22:18:51 29 Mar 2017 UTC: INFO: QC.py(408): Changed (3/728) 278 283 288 to QC_PROBABLY_BAD because raw conductivity spikes 22:18:51 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/728) 725 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 22:18:51 29 Mar 2017 UTC: INFO: QC.py(180): Changed (4/728) 2 278 283 288 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 22:18:51 29 Mar 2017 UTC: INFO: QC.py(180): Changed (3/728) 725:727 to QC_BAD because changed raw cond implies changed raw salinity 22:18:51 29 Mar 2017 UTC: INFO: QC.py(365): Changed (4/728) 2 278 283 288 to QC_INTERPOLATED because temperature spikes 22:18:51 29 Mar 2017 UTC: INFO: QC.py(377): Changed (1/728) 728 to QC_BAD because salinity below bound 22:18:51 29 Mar 2017 UTC: INFO: QC.py(408): Changed (3/728) 278 283 288 to QC_INTERPOLATED because conductivity spikes 22:18:51 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/728) 725 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 22:18:51 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/728) 284:288 to QC_BAD because slow apogee CT flow 22:18:51 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/728) 1:6 to QC_BAD because prior to dive start 22:18:51 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/728) 724 to QC_BAD because end of climb 22:18:51 29 Mar 2017 UTC: INFO: QC.py(488): Changed (1/728) 283 to QC_PROBABLY_BAD because bad interpolation anchors 22:18:51 29 Mar 2017 UTC: INFO: QC.py(489): SUGGESTION: 476 bad_conductivity data_points in_between 281 283 % bad interpolation anchors 22:18:51 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/728) 1:6 284:288 724:728 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:18:51 29 Mar 2017 UTC: INFO: QC.py(180): Changed (16/728) 1:6 284:288 724:728 to QC_BAD because changed corrected salin implies changed speed 22:18:52 29 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:18:52 29 Mar 2017 UTC: INFO: QC.py(180): Changed (2/728) 278 283 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 22:18:52 29 Mar 2017 UTC: INFO: QC.py(180): Changed (1/728) 283 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 22:18:52 29 Mar 2017 UTC: INFO: QC.py(180): Changed (2/728) 278 283 to QC_INTERPOLATED because changed corrected temp implies changed speed 22:18:52 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.82 cm/s 22:18:52 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.05 cm/s 22:18:52 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:18:52 29 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (216/728) 155 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:18:52 29 Mar 2017 UTC: INFO: QC.py(180): Changed (1/728) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 22:18:52 29 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (216/728) 155 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 22:18:52 29 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (4/728) 721 722 726 727 to QC_BAD because bad aa4330 oyxgen 22:18:52 29 Mar 2017 UTC: INFO: QC.py(180): Changed (1/728) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 22:18:52 29 Mar 2017 UTC: INFO: QC.py(180): Changed (14/728) 1:6 284:288 724 725 728 to QC_BAD because changed salinity implies changed optode oxygen 22:18:52 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:18:52 29 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 22:18:52 29 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 22:18:52 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 476: Data set size for profile, binned and kkyy files reduced by 16 points, a 2.20% reduction 22:18:52 29 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.476 22:18:52 29 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.476 22:18:52 29 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:18:52 29 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:18:52 29 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:18:53 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 22:18:53 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 22:22:54 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 22:22:55 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 22:22:55 29 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 22:23:48 29 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:23:48 29 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:23:48 29 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:23:48 29 Mar 2017 UTC /home/sg626/p6260476.log /home/sg626/p6260476.eng /home/sg626/p6260476.asc /home/sg626/p6260476.pro /home/sg626/p6260476.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 22:23:48 29 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:23:48 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:23:48 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:23:48 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:23:48 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:23:48 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:23:48 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:23:48 29 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:23:48 29 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:23:48 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:23:48 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:23:48 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:23:48 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:23:48 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:23:48 29 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:23:48 29 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:23:48 29 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:23:48 29 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:23:48 29 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:23:48 29 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:23:48 29 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:23:48 29 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:23:48 29 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:23:48 29 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 22:23:48 29 Mar 2017 UTC 02:22:47 30 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 3780 02:22:47 30 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:26:13 30 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 3911 02:26:13 30 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:26:13 30 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:26:13 30 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:26:13 30 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:26:13 30 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170329162613 ] 02:26:13 30 Mar 2017 UTC: INFO: Base.py(1333): PID:3918 02:26:13 30 Mar 2017 UTC: INFO: Base.py(1375): Started processing 02:26:13 30 Mar 2017 UTC 02:26:13 30 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:26:15 30 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:26:15 30 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:26:15 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:26:15 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:477 calls_made:1 call_cycle:0 02:26:15 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:26:15 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:477 calls_made:1 call_cycle:0 02:26:15 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:26:15 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:477 calls_made:1 call_cycle:0 02:26:15 30 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:477 calls_made:1 call_cycle:0 2238.7230 -15757.3370 03/30/17 02:20:25 UTC) to sdrifter@soest.hawaii.edu 02:26:15 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:477 calls_made:1 call_cycle:0 02:26:15 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:26:15 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:477 calls_made:1 call_cycle:0 02:26:15 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:26:15 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:477 calls_made:1 call_cycle:0 02:26:15 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:26:15 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:477 calls_made:1 call_cycle:0 02:26:15 30 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:26:15 30 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:26:22 30 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:26:24 30 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:26:24 30 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:26:24 30 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:26:24 30 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:26:24 30 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:26:27 30 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0477lz 02:26:27 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0477lz.x00 02:26:27 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0477lz.x01 02:26:27 30 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0477lz.r in process_file_group 02:26:27 30 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260477.log 02:26:27 30 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 02:26:27 30 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0477dz 02:26:27 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0477dz.x00 02:26:27 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0477dz.x01 02:26:27 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0477dz.x02 02:26:27 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0477dz.x03 02:26:27 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0477dz.x04 02:26:27 30 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0477dz.r in process_file_group 02:26:28 30 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [477] 02:26:28 30 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [477] 02:26:28 30 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260477) for profiles 02:26:28 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 02:26:28 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/760) 759 760 to QC_BAD because CT out of water 02:26:28 30 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.119m) 02:26:28 30 Mar 2017 UTC: INFO: QC.py(365): Changed (3/760) 2 301 759 to QC_PROBABLY_BAD because raw temperature spikes 02:26:28 30 Mar 2017 UTC: INFO: QC.py(377): Changed (2/760) 759 760 to QC_BAD because raw salinity below bound 02:26:28 30 Mar 2017 UTC: INFO: QC.py(180): Changed (2/760) 2 301 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:26:28 30 Mar 2017 UTC: INFO: QC.py(365): Changed (3/760) 2 301 759 to QC_INTERPOLATED because temperature spikes 02:26:28 30 Mar 2017 UTC: INFO: QC.py(377): Changed (2/760) 759 760 to QC_BAD because salinity below bound 02:26:28 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/760) 299:303 to QC_BAD because slow apogee CT flow 02:26:28 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/760) 1:6 to QC_BAD because prior to dive start 02:26:28 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/760) 758 to QC_BAD because end of climb 02:26:28 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/760) 1:6 299:303 758:760 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:26:28 30 Mar 2017 UTC: INFO: QC.py(180): Changed (14/760) 1:6 299:303 758:760 to QC_BAD because changed corrected salin implies changed speed 02:26:29 30 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:26:29 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.39 cm/s 02:26:29 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.18 cm/s 02:26:29 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:26:29 30 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (210/760) 174 175 177:180 182:185 187:190 192:195 197:200 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:26:29 30 Mar 2017 UTC: INFO: QC.py(180): Changed (3/760) 2 301 759 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:26:29 30 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (210/760) 174 175 177:180 182:185 187:190 192:195 197:200 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 02:26:29 30 Mar 2017 UTC: INFO: QC.py(180): Changed (3/760) 2 301 759 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:26:29 30 Mar 2017 UTC: INFO: QC.py(180): Changed (14/760) 1:6 299:303 758:760 to QC_BAD because changed salinity implies changed optode oxygen 02:26:29 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:26:29 30 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:26:29 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 02:26:30 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 477: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.84% reduction 02:26:30 30 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.477 02:26:30 30 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:26:30 30 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:26:30 30 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:26:30 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 02:26:30 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 02:30:32 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 02:30:33 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 02:30:33 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 02:31:25 30 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:31:25 30 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:31:25 30 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:31:25 30 Mar 2017 UTC /home/sg626/p6260477.log /home/sg626/p6260477.eng /home/sg626/p6260477.asc /home/sg626/p6260477.pro /home/sg626/p6260477.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 02:31:25 30 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:31:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:31:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:31:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:31:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:31:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:31:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:31:25 30 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:31:25 30 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:31:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:31:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:31:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:31:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:31:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:31:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:31:25 30 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:31:25 30 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:31:25 30 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:31:25 30 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:31:25 30 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:31:25 30 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:31:25 30 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:31:25 30 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:31:25 30 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 02:31:25 30 Mar 2017 UTC 06:28:15 30 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9933 06:28:15 30 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:31:32 30 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 10154 06:31:32 30 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:31:32 30 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 06:31:32 30 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 06:31:32 30 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:31:32 30 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170329203132 ] 06:31:32 30 Mar 2017 UTC: INFO: Base.py(1333): PID:10161 06:31:32 30 Mar 2017 UTC: INFO: Base.py(1375): Started processing 06:31:32 30 Mar 2017 UTC 06:31:32 30 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 06:31:34 30 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 06:31:34 30 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:31:34 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:31:34 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:478 calls_made:1 call_cycle:0 06:31:34 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:31:34 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:478 calls_made:1 call_cycle:0 06:31:34 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:31:34 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:478 calls_made:1 call_cycle:0 06:31:34 30 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:478 calls_made:1 call_cycle:0 2239.4410 -15758.0030 03/30/17 06:25:54 UTC) to sdrifter@soest.hawaii.edu 06:31:34 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:478 calls_made:1 call_cycle:0 06:31:34 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:31:34 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:478 calls_made:1 call_cycle:0 06:31:34 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:31:34 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:478 calls_made:1 call_cycle:0 06:31:34 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:31:34 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:478 calls_made:1 call_cycle:0 06:31:34 30 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:31:34 30 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:31:41 30 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:31:43 30 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:31:43 30 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 06:31:43 30 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:31:43 30 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:31:43 30 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 06:31:46 30 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0478lz 06:31:46 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0478lz.x00 06:31:46 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0478lz.x01 06:31:46 30 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0478lz.r in process_file_group 06:31:46 30 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260478.log 06:31:46 30 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 06:31:46 30 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0478dz 06:31:46 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0478dz.x00 06:31:46 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0478dz.x01 06:31:46 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0478dz.x02 06:31:46 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0478dz.x03 06:31:46 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0478dz.x04 06:31:46 30 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0478dz.r in process_file_group 06:31:47 30 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [478] 06:31:47 30 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [478] 06:31:47 30 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260478) for profiles 06:31:47 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 06:31:47 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/736) 735 736 to QC_BAD because CT out of water 06:31:47 30 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.055m) 06:31:47 30 Mar 2017 UTC: INFO: QC.py(365): Changed (1/736) 735 to QC_PROBABLY_BAD because raw temperature spikes 06:31:47 30 Mar 2017 UTC: INFO: QC.py(377): Changed (1/736) 736 to QC_BAD because raw salinity below bound 06:31:47 30 Mar 2017 UTC: INFO: QC.py(408): Changed (1/736) 46 to QC_PROBABLY_BAD because raw conductivity spikes 06:31:47 30 Mar 2017 UTC: INFO: QC.py(180): Changed (1/736) 735 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 06:31:47 30 Mar 2017 UTC: INFO: QC.py(180): Changed (1/736) 46 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 06:31:47 30 Mar 2017 UTC: INFO: QC.py(180): Changed (1/736) 735 to QC_BAD because changed raw cond implies changed raw salinity 06:31:47 30 Mar 2017 UTC: INFO: QC.py(365): Changed (1/736) 735 to QC_INTERPOLATED because temperature spikes 06:31:47 30 Mar 2017 UTC: INFO: QC.py(377): Changed (1/736) 736 to QC_BAD because salinity below bound 06:31:47 30 Mar 2017 UTC: INFO: QC.py(408): Changed (1/736) 46 to QC_INTERPOLATED because conductivity spikes 06:31:47 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/736) 279:283 to QC_BAD because slow apogee CT flow 06:31:47 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/736) 1:6 to QC_BAD because prior to dive start 06:31:47 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/736) 733 734 to QC_BAD because end of climb 06:31:47 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/736) 1:6 279:283 733:736 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 06:31:47 30 Mar 2017 UTC: INFO: QC.py(180): Changed (15/736) 1:6 279:283 733:736 to QC_BAD because changed corrected salin implies changed speed 06:31:48 30 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 06:31:48 30 Mar 2017 UTC: INFO: QC.py(180): Changed (1/736) 46 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 06:31:48 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.56 cm/s 06:31:48 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.35 cm/s 06:31:48 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 06:31:48 30 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (208/736) 155 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 06:31:48 30 Mar 2017 UTC: INFO: QC.py(180): Changed (1/736) 735 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 06:31:48 30 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (208/736) 155 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 06:31:48 30 Mar 2017 UTC: INFO: QC.py(180): Changed (1/736) 735 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 06:31:48 30 Mar 2017 UTC: INFO: QC.py(180): Changed (15/736) 1:6 279:283 733:736 to QC_BAD because changed salinity implies changed optode oxygen 06:31:48 30 Mar 2017 UTC: INFO: QC.py(180): Changed (1/736) 46 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 06:31:48 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 06:31:48 30 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 06:31:48 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 06:31:48 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 478: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.04% reduction 06:31:48 30 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.478 06:31:48 30 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:31:48 30 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:31:48 30 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:31:49 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 06:31:49 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 06:35:51 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 06:35:53 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 06:35:53 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 06:36:45 30 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:36:45 30 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:36:45 30 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 06:36:45 30 Mar 2017 UTC /home/sg626/p6260478.log /home/sg626/p6260478.eng /home/sg626/p6260478.asc /home/sg626/p6260478.pro /home/sg626/p6260478.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 06:36:45 30 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:36:45 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:36:45 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:36:45 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:36:45 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:36:45 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:36:45 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:36:45 30 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:36:45 30 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:36:45 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:36:45 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:36:45 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:36:45 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:36:45 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:36:45 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:36:45 30 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:36:45 30 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 06:36:45 30 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 06:36:45 30 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 06:36:45 30 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 06:36:45 30 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:36:45 30 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:36:45 30 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:36:45 30 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 06:36:45 30 Mar 2017 UTC 10:27:00 30 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 16451 10:27:00 30 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:30:04 30 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 16650 10:30:04 30 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:30:04 30 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:30:04 30 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:30:04 30 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:30:04 30 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170330003003 ] 10:30:04 30 Mar 2017 UTC: INFO: Base.py(1333): PID:16657 10:30:04 30 Mar 2017 UTC: INFO: Base.py(1375): Started processing 10:30:04 30 Mar 2017 UTC 10:30:04 30 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:30:05 30 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:30:05 30 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:30:05 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:30:05 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:479 calls_made:3 call_cycle:0 10:30:05 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:30:05 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:479 calls_made:3 call_cycle:0 10:30:05 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:30:05 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:479 calls_made:3 call_cycle:0 10:30:05 30 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:479 calls_made:3 call_cycle:0 2240.2630 -15758.4110 03/30/17 10:21:00 UTC) to sdrifter@soest.hawaii.edu 10:30:05 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:479 calls_made:3 call_cycle:0 10:30:05 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:30:05 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:479 calls_made:3 call_cycle:0 10:30:05 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:30:05 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:479 calls_made:3 call_cycle:0 10:30:05 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:30:05 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:479 calls_made:3 call_cycle:0 10:30:05 30 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:30:05 30 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:30:13 30 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:30:14 30 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:30:14 30 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:30:14 30 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:30:14 30 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:30:14 30 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:30:18 30 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0479lz 10:30:18 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0479lz.x00 10:30:18 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0479lz.x01 10:30:18 30 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0479lz.r in process_file_group 10:30:18 30 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260479.log 10:30:18 30 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:30:18 30 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0479dz 10:30:18 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0479dz.x00 10:30:18 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0479dz.x01 10:30:18 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0479dz.x02 10:30:18 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0479dz.x03 10:30:18 30 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0479dz.r in process_file_group 10:30:18 30 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [479] 10:30:18 30 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [479] 10:30:18 30 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260479) for profiles 10:30:18 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 10:30:18 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/652) 651 652 to QC_BAD because CT out of water 10:30:18 30 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.102m) 10:30:18 30 Mar 2017 UTC: INFO: QC.py(365): Changed (7/652) 268 281 288 291 292 295 651 to QC_PROBABLY_BAD because raw temperature spikes 10:30:18 30 Mar 2017 UTC: INFO: QC.py(377): Changed (1/652) 651 to QC_BAD because raw salinity below bound 10:30:18 30 Mar 2017 UTC: INFO: QC.py(408): Changed (6/652) 3 268 291 292 294 295 to QC_PROBABLY_BAD because raw conductivity spikes 10:30:18 30 Mar 2017 UTC: INFO: QC.py(180): Changed (6/652) 268 281 288 291 292 295 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 10:30:18 30 Mar 2017 UTC: INFO: QC.py(180): Changed (2/652) 3 294 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 10:30:18 30 Mar 2017 UTC: INFO: QC.py(180): Changed (1/652) 652 to QC_BAD because changed raw cond implies changed raw salinity 10:30:18 30 Mar 2017 UTC: INFO: QC.py(365): Changed (7/652) 268 281 288 291 292 295 651 to QC_INTERPOLATED because temperature spikes 10:30:18 30 Mar 2017 UTC: INFO: QC.py(377): Changed (1/652) 651 to QC_BAD because salinity below bound 10:30:18 30 Mar 2017 UTC: INFO: QC.py(408): Changed (6/652) 3 268 291 292 294 295 to QC_INTERPOLATED because conductivity spikes 10:30:18 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/652) 279:283 to QC_BAD because slow apogee CT flow 10:30:19 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/652) 1:6 to QC_BAD because prior to dive start 10:30:19 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/652) 1:6 279:283 651 652 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:30:19 30 Mar 2017 UTC: INFO: QC.py(180): Changed (13/652) 1:6 279:283 651 652 to QC_BAD because changed corrected salin implies changed speed 10:30:19 30 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 10:30:19 30 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 479 interp_salinity data_points in_between 401 426 % suspect thermal-inertia points 406 10:30:19 30 Mar 2017 UTC: INFO: QC.py(180): Changed (5/652) 268 288 291 292 295 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 10:30:19 30 Mar 2017 UTC: INFO: QC.py(180): Changed (1/652) 294 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 10:30:19 30 Mar 2017 UTC: INFO: QC.py(180): Changed (5/652) 268 288 291 292 295 to QC_INTERPOLATED because changed corrected temp implies changed speed 10:30:19 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.77 cm/s 10:30:19 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.99 cm/s 10:30:19 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:30:19 30 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (212/652) 154 155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:30:19 30 Mar 2017 UTC: INFO: QC.py(180): Changed (3/652) 281 291 651 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 10:30:19 30 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (212/652) 154 155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 10:30:19 30 Mar 2017 UTC: INFO: QC.py(180): Changed (3/652) 281 291 651 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 10:30:19 30 Mar 2017 UTC: INFO: QC.py(180): Changed (13/652) 1:6 279:283 651 652 to QC_BAD because changed salinity implies changed optode oxygen 10:30:19 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:30:19 30 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:30:19 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 10:30:20 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 479: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.99% reduction 10:30:20 30 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.479 10:30:20 30 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:30:20 30 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:30:20 30 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:30:20 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 10:30:20 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 10:34:25 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 10:34:26 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 10:34:26 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 10:35:19 30 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:35:19 30 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:35:19 30 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 10:35:19 30 Mar 2017 UTC /home/sg626/p6260479.log /home/sg626/p6260479.eng /home/sg626/p6260479.asc /home/sg626/p6260479.pro /home/sg626/p6260479.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 10:35:19 30 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:35:19 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:35:19 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:35:19 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:35:19 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:35:19 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:35:19 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:35:19 30 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:35:19 30 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:35:19 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:35:19 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:35:19 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:35:19 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:35:19 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:35:19 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:35:19 30 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:35:19 30 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:35:19 30 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:35:19 30 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:35:19 30 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:35:19 30 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:35:19 30 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:35:19 30 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:35:19 30 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 10:35:19 30 Mar 2017 UTC 14:31:28 30 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 22989 14:31:28 30 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:34:46 30 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 23127 14:34:46 30 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:34:46 30 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 14:34:46 30 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 14:34:46 30 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:34:46 30 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170330043445 ] 14:34:46 30 Mar 2017 UTC: INFO: Base.py(1333): PID:23134 14:34:46 30 Mar 2017 UTC: INFO: Base.py(1375): Started processing 14:34:46 30 Mar 2017 UTC 14:34:46 30 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 14:34:47 30 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 14:34:47 30 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:34:47 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:34:47 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:480 calls_made:1 call_cycle:0 14:34:47 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:34:47 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:480 calls_made:1 call_cycle:0 14:34:47 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:34:47 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:480 calls_made:1 call_cycle:0 14:34:47 30 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:480 calls_made:1 call_cycle:0 2240.4640 -15759.1890 03/30/17 14:29:01 UTC) to sdrifter@soest.hawaii.edu 14:34:47 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:480 calls_made:1 call_cycle:0 14:34:47 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:34:47 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:480 calls_made:1 call_cycle:0 14:34:47 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:34:47 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:480 calls_made:1 call_cycle:0 14:34:47 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:34:47 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:480 calls_made:1 call_cycle:0 14:34:47 30 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:34:47 30 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:34:55 30 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:34:56 30 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:34:56 30 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 14:34:56 30 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:34:56 30 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:34:56 30 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 14:35:00 30 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0480lz 14:35:00 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0480lz.x00 14:35:00 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0480lz.x01 14:35:00 30 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0480lz.r in process_file_group 14:35:00 30 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260480.log 14:35:00 30 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 14:35:00 30 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0480dz 14:35:00 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0480dz.x00 14:35:00 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0480dz.x01 14:35:00 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0480dz.x02 14:35:00 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0480dz.x03 14:35:00 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0480dz.x04 14:35:00 30 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0480dz.r in process_file_group 14:35:00 30 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [480] 14:35:00 30 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [480] 14:35:01 30 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260480) for profiles 14:35:01 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 14:35:01 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/749) 748 749 to QC_BAD because CT out of water 14:35:01 30 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.052m) 14:35:01 30 Mar 2017 UTC: INFO: QC.py(365): Changed (5/749) 3 298 336 493 494 to QC_PROBABLY_BAD because raw temperature spikes 14:35:01 30 Mar 2017 UTC: INFO: QC.py(377): Changed (1/749) 748 to QC_BAD because raw salinity below bound 14:35:01 30 Mar 2017 UTC: INFO: QC.py(408): Changed (3/749) 45 259 336 to QC_PROBABLY_BAD because raw conductivity spikes 14:35:01 30 Mar 2017 UTC: INFO: QC.py(180): Changed (5/749) 3 298 336 493 494 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:35:01 30 Mar 2017 UTC: INFO: QC.py(180): Changed (2/749) 45 259 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 14:35:01 30 Mar 2017 UTC: INFO: QC.py(180): Changed (1/749) 749 to QC_BAD because changed raw cond implies changed raw salinity 14:35:01 30 Mar 2017 UTC: INFO: QC.py(365): Changed (5/749) 3 298 336 493 494 to QC_INTERPOLATED because temperature spikes 14:35:01 30 Mar 2017 UTC: INFO: QC.py(377): Changed (1/749) 748 to QC_BAD because salinity below bound 14:35:01 30 Mar 2017 UTC: INFO: QC.py(408): Changed (3/749) 45 259 336 to QC_INTERPOLATED because conductivity spikes 14:35:01 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/749) 296:300 to QC_BAD because slow apogee CT flow 14:35:01 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/749) 1:6 to QC_BAD because prior to dive start 14:35:01 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/749) 747 to QC_BAD because end of climb 14:35:01 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/749) 1:6 296:300 747:749 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:35:01 30 Mar 2017 UTC: INFO: QC.py(180): Changed (14/749) 1:6 296:300 747:749 to QC_BAD because changed corrected salin implies changed speed 14:35:02 30 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:35:02 30 Mar 2017 UTC: INFO: QC.py(180): Changed (3/749) 336 493 494 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 14:35:02 30 Mar 2017 UTC: INFO: QC.py(180): Changed (2/749) 45 259 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 14:35:02 30 Mar 2017 UTC: INFO: QC.py(180): Changed (3/749) 336 493 494 to QC_INTERPOLATED because changed corrected temp implies changed speed 14:35:02 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.66 cm/s 14:35:02 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.09 cm/s 14:35:02 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:35:02 30 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (209/749) 169 170 172:175 177:180 182:185 187:190 192:195 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:35:02 30 Mar 2017 UTC: INFO: QC.py(180): Changed (4/749) 3 336 493 494 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 14:35:02 30 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (209/749) 169 170 172:175 177:180 182:185 187:190 192:195 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 14:35:02 30 Mar 2017 UTC: INFO: QC.py(180): Changed (4/749) 3 336 493 494 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 14:35:02 30 Mar 2017 UTC: INFO: QC.py(180): Changed (14/749) 1:6 296:300 747:749 to QC_BAD because changed salinity implies changed optode oxygen 14:35:02 30 Mar 2017 UTC: INFO: QC.py(180): Changed (1/749) 45 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 14:35:02 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:35:02 30 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:35:02 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 14:35:02 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 480: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.87% reduction 14:35:02 30 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.480 14:35:02 30 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:35:02 30 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:35:02 30 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:35:03 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 14:35:03 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 14:39:09 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 14:39:10 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 14:39:10 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 14:40:03 30 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:40:03 30 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:40:03 30 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:40:03 30 Mar 2017 UTC /home/sg626/p6260480.log /home/sg626/p6260480.eng /home/sg626/p6260480.asc /home/sg626/p6260480.pro /home/sg626/p6260480.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 14:40:03 30 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:40:03 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:40:03 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:40:03 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:40:03 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:40:03 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:40:03 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:40:03 30 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:40:03 30 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:40:03 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:40:03 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:40:03 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:40:03 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:40:03 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:40:03 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:40:03 30 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:40:03 30 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:40:03 30 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:40:03 30 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:40:03 30 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:40:03 30 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:40:03 30 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:40:03 30 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:40:03 30 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 14:40:03 30 Mar 2017 UTC 18:20:57 30 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 29083 18:20:57 30 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 18:24:11 30 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 29216 18:24:11 30 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:24:11 30 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 18:24:11 30 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 18:24:11 30 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:24:11 30 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170330082411 ] 18:24:11 30 Mar 2017 UTC: INFO: Base.py(1333): PID:29224 18:24:11 30 Mar 2017 UTC: INFO: Base.py(1375): Started processing 18:24:11 30 Mar 2017 UTC 18:24:12 30 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 18:24:13 30 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 18:24:13 30 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:24:13 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:24:13 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:481 calls_made:1 call_cycle:0 18:24:13 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:24:13 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:481 calls_made:1 call_cycle:0 18:24:13 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:24:13 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:481 calls_made:1 call_cycle:0 18:24:13 30 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:481 calls_made:1 call_cycle:0 2241.0880 -15759.7220 03/30/17 18:18:37 UTC) to sdrifter@soest.hawaii.edu 18:24:13 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:481 calls_made:1 call_cycle:0 18:24:13 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:24:13 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:481 calls_made:1 call_cycle:0 18:24:13 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:24:13 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:481 calls_made:1 call_cycle:0 18:24:13 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:24:13 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:481 calls_made:1 call_cycle:0 18:24:13 30 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:24:13 30 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:24:20 30 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:24:22 30 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:24:22 30 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 18:24:22 30 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:24:22 30 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:24:22 30 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 18:24:26 30 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0481lz 18:24:26 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0481lz.x00 18:24:26 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0481lz.x01 18:24:26 30 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0481lz.r in process_file_group 18:24:26 30 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260481.log 18:24:26 30 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 18:24:26 30 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0481dz 18:24:26 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0481dz.x00 18:24:26 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0481dz.x01 18:24:26 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0481dz.x02 18:24:26 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0481dz.x03 18:24:26 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0481dz.x04 18:24:26 30 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0481dz.r in process_file_group 18:24:26 30 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [481] 18:24:26 30 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [481] 18:24:26 30 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260481) for profiles 18:24:26 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 18:24:27 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/681) 681 to QC_BAD because CT out of water 18:24:27 30 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.037m) 18:24:27 30 Mar 2017 UTC: INFO: QC.py(365): Changed (8/681) 2 3 216 261 262 270 291 295 to QC_PROBABLY_BAD because raw temperature spikes 18:24:27 30 Mar 2017 UTC: INFO: QC.py(408): Changed (5/681) 259:262 291 to QC_PROBABLY_BAD because raw conductivity spikes 18:24:27 30 Mar 2017 UTC: INFO: QC.py(180): Changed (8/681) 2 3 216 261 262 270 291 295 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 18:24:27 30 Mar 2017 UTC: INFO: QC.py(180): Changed (2/681) 259 260 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 18:24:27 30 Mar 2017 UTC: INFO: QC.py(180): Changed (1/681) 681 to QC_BAD because changed raw cond implies changed raw salinity 18:24:27 30 Mar 2017 UTC: INFO: QC.py(365): Changed (8/681) 2 3 216 261 262 270 291 295 to QC_INTERPOLATED because temperature spikes 18:24:27 30 Mar 2017 UTC: INFO: QC.py(408): Changed (5/681) 259:262 291 to QC_INTERPOLATED because conductivity spikes 18:24:27 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/681) 272:276 to QC_BAD because slow apogee CT flow 18:24:27 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/681) 1:6 to QC_BAD because prior to dive start 18:24:27 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/681) 1:6 272:276 681 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 18:24:27 30 Mar 2017 UTC: INFO: QC.py(180): Changed (12/681) 1:6 272:276 681 to QC_BAD because changed corrected salin implies changed speed 18:24:27 30 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 18:24:27 30 Mar 2017 UTC: INFO: QC.py(180): Changed (6/681) 216 261 262 270 291 295 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 18:24:27 30 Mar 2017 UTC: INFO: QC.py(180): Changed (2/681) 259 260 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 18:24:27 30 Mar 2017 UTC: INFO: QC.py(180): Changed (6/681) 216 261 262 270 291 295 to QC_INTERPOLATED because changed corrected temp implies changed speed 18:24:27 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.94 cm/s 18:24:27 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.18 cm/s 18:24:27 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 18:24:27 30 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (199/681) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 18:24:27 30 Mar 2017 UTC: INFO: QC.py(180): Changed (5/681) 2 3 216 261 291 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 18:24:27 30 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (199/681) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 18:24:27 30 Mar 2017 UTC: INFO: QC.py(180): Changed (5/681) 2 3 216 261 291 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 18:24:27 30 Mar 2017 UTC: INFO: QC.py(180): Changed (12/681) 1:6 272:276 681 to QC_BAD because changed salinity implies changed optode oxygen 18:24:27 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 18:24:27 30 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 18:24:27 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 18:24:28 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 481: Data set size for profile, binned and kkyy files reduced by 12 points, a 1.76% reduction 18:24:28 30 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.481 18:24:28 30 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:24:28 30 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:24:28 30 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:24:28 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 18:24:28 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 18:28:31 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 18:28:33 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 18:28:33 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 18:29:25 30 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:29:25 30 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:29:25 30 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:29:25 30 Mar 2017 UTC /home/sg626/p6260481.log /home/sg626/p6260481.eng /home/sg626/p6260481.asc /home/sg626/p6260481.pro /home/sg626/p6260481.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 18:29:25 30 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:29:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:29:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:29:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:29:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:29:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:29:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:29:25 30 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:29:25 30 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:29:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:29:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:29:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:29:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:29:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:29:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:29:25 30 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:29:25 30 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 18:29:25 30 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 18:29:25 30 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 18:29:25 30 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 18:29:25 30 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:29:25 30 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:29:25 30 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:29:25 30 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 18:29:25 30 Mar 2017 UTC 22:30:53 30 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 3474 22:30:53 30 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:34:07 30 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 3552 22:34:07 30 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:34:07 30 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:34:07 30 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:34:07 30 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:34:07 30 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170330123406 ] 22:34:07 30 Mar 2017 UTC: INFO: Base.py(1333): PID:3560 22:34:07 30 Mar 2017 UTC: INFO: Base.py(1375): Started processing 22:34:07 30 Mar 2017 UTC 22:34:07 30 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:34:09 30 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:34:09 30 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:34:09 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:34:09 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:482 calls_made:1 call_cycle:0 22:34:09 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:34:09 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:482 calls_made:1 call_cycle:0 22:34:09 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:34:09 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:482 calls_made:1 call_cycle:0 22:34:09 30 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:482 calls_made:1 call_cycle:0 2242.1330 -15800.3310 03/30/17 22:28:30 UTC) to sdrifter@soest.hawaii.edu 22:34:09 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:482 calls_made:1 call_cycle:0 22:34:09 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:34:09 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:482 calls_made:1 call_cycle:0 22:34:09 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:34:09 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:482 calls_made:1 call_cycle:0 22:34:09 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:34:09 30 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:482 calls_made:1 call_cycle:0 22:34:09 30 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:34:09 30 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:34:16 30 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:34:18 30 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:34:18 30 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:34:18 30 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:34:18 30 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:34:18 30 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:34:21 30 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0482lz 22:34:21 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0482lz.x00 22:34:21 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0482lz.x01 22:34:21 30 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0482lz.r in process_file_group 22:34:21 30 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260482.log 22:34:21 30 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 22:34:21 30 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0482dz 22:34:21 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0482dz.x00 22:34:21 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0482dz.x01 22:34:21 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0482dz.x02 22:34:21 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0482dz.x03 22:34:21 30 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0482dz.x04 22:34:21 30 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0482dz.r in process_file_group 22:34:22 30 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [482] 22:34:22 30 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [482] 22:34:22 30 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260482) for profiles 22:34:22 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 22:34:22 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/725) 724 725 to QC_BAD because CT out of water 22:34:22 30 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.147m) 22:34:22 30 Mar 2017 UTC: INFO: QC.py(365): Changed (12/725) 3 226 243:246 268 286 304 312 316 318 to QC_PROBABLY_BAD because raw temperature spikes 22:34:22 30 Mar 2017 UTC: INFO: QC.py(377): Changed (1/725) 725 to QC_BAD because raw salinity below bound 22:34:22 30 Mar 2017 UTC: INFO: QC.py(408): Changed (7/725) 2 244:246 286 304 312 to QC_PROBABLY_BAD because raw conductivity spikes 22:34:22 30 Mar 2017 UTC: INFO: QC.py(180): Changed (12/725) 3 226 243:246 268 286 304 312 316 318 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 22:34:22 30 Mar 2017 UTC: INFO: QC.py(180): Changed (1/725) 2 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 22:34:22 30 Mar 2017 UTC: INFO: QC.py(180): Changed (1/725) 724 to QC_BAD because changed raw cond implies changed raw salinity 22:34:22 30 Mar 2017 UTC: INFO: QC.py(365): Changed (12/725) 3 226 243:246 268 286 304 312 316 318 to QC_INTERPOLATED because temperature spikes 22:34:22 30 Mar 2017 UTC: INFO: QC.py(377): Changed (1/725) 725 to QC_BAD because salinity below bound 22:34:22 30 Mar 2017 UTC: INFO: QC.py(408): Changed (7/725) 2 244:246 286 304 312 to QC_INTERPOLATED because conductivity spikes 22:34:22 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/725) 284:288 to QC_BAD because slow apogee CT flow 22:34:22 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/725) 1:6 to QC_BAD because prior to dive start 22:34:22 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/725) 722 723 to QC_BAD because end of climb 22:34:22 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/725) 1:6 284:288 722:725 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:34:22 30 Mar 2017 UTC: INFO: QC.py(180): Changed (15/725) 1:6 284:288 722:725 to QC_BAD because changed corrected salin implies changed speed 22:34:23 30 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:34:23 30 Mar 2017 UTC: INFO: QC.py(180): Changed (10/725) 226 243:246 268 304 312 316 318 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 22:34:23 30 Mar 2017 UTC: INFO: QC.py(180): Changed (10/725) 226 243:246 268 304 312 316 318 to QC_INTERPOLATED because changed corrected temp implies changed speed 22:34:23 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.59 cm/s 22:34:23 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.17 cm/s 22:34:23 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:34:23 30 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (220/725) 153:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:34:23 30 Mar 2017 UTC: INFO: QC.py(180): Changed (5/725) 3 226 246 286 316 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 22:34:23 30 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (220/725) 153:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 22:34:23 30 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/725) 719 725 to QC_BAD because bad aa4330 oyxgen 22:34:23 30 Mar 2017 UTC: INFO: QC.py(180): Changed (5/725) 3 226 246 286 316 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 22:34:23 30 Mar 2017 UTC: INFO: QC.py(180): Changed (14/725) 1:6 284:288 722:724 to QC_BAD because changed salinity implies changed optode oxygen 22:34:23 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:34:23 30 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 22:34:23 30 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 22:34:23 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 482: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.07% reduction 22:34:23 30 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.482 22:34:23 30 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:34:23 30 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:34:23 30 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:34:24 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 22:34:24 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 22:38:31 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 22:38:32 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 22:38:32 30 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 22:39:25 30 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:39:25 30 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:39:25 30 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:39:25 30 Mar 2017 UTC /home/sg626/p6260482.log /home/sg626/p6260482.eng /home/sg626/p6260482.asc /home/sg626/p6260482.pro /home/sg626/p6260482.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 22:39:25 30 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:39:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:39:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:39:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:39:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:39:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:39:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:39:25 30 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:39:25 30 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:39:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:39:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:39:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:39:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:39:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:39:25 30 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:39:25 30 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:39:25 30 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:39:25 30 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:39:25 30 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:39:25 30 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:39:25 30 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:39:25 30 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:39:25 30 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:39:25 30 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 22:39:25 30 Mar 2017 UTC 02:37:54 31 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9753 02:37:54 31 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:41:09 31 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 9974 02:41:09 31 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:41:09 31 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:41:09 31 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:41:09 31 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:41:09 31 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170330164109 ] 02:41:09 31 Mar 2017 UTC: INFO: Base.py(1333): PID:9983 02:41:09 31 Mar 2017 UTC: INFO: Base.py(1375): Started processing 02:41:09 31 Mar 2017 UTC 02:41:09 31 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:41:11 31 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:41:11 31 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:41:11 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:41:11 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:483 calls_made:1 call_cycle:0 02:41:11 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:41:11 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:483 calls_made:1 call_cycle:0 02:41:11 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:41:11 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:483 calls_made:1 call_cycle:0 02:41:11 31 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:483 calls_made:1 call_cycle:0 2242.7910 -15800.8930 03/31/17 02:35:30 UTC) to sdrifter@soest.hawaii.edu 02:41:16 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:483 calls_made:1 call_cycle:0 02:41:16 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:41:16 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:483 calls_made:1 call_cycle:0 02:41:16 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:41:16 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:483 calls_made:1 call_cycle:0 02:41:16 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:41:16 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:483 calls_made:1 call_cycle:0 02:41:16 31 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:41:16 31 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:41:23 31 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:41:25 31 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:41:25 31 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:41:25 31 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:41:25 31 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:41:25 31 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:41:28 31 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0483lz 02:41:28 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0483lz.x00 02:41:28 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0483lz.x01 02:41:28 31 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0483lz.r in process_file_group 02:41:28 31 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260483.log 02:41:28 31 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 02:41:28 31 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0483dz 02:41:28 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0483dz.x00 02:41:28 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0483dz.x01 02:41:28 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0483dz.x02 02:41:28 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0483dz.x03 02:41:28 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0483dz.x04 02:41:28 31 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0483dz.r in process_file_group 02:41:29 31 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [483] 02:41:29 31 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [483] 02:41:29 31 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260483) for profiles 02:41:29 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 02:41:29 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (4/745) 742:745 to QC_BAD because CT out of water 02:41:29 31 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.115m) 02:41:29 31 Mar 2017 UTC: INFO: QC.py(365): Changed (8/745) 242 243 250 269 297 301 302 744 to QC_PROBABLY_BAD because raw temperature spikes 02:41:29 31 Mar 2017 UTC: INFO: QC.py(408): Changed (7/745) 242 265 269 297 301 302 306 to QC_PROBABLY_BAD because raw conductivity spikes 02:41:29 31 Mar 2017 UTC: INFO: QC.py(180): Changed (8/745) 242 243 250 269 297 301 302 744 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:41:29 31 Mar 2017 UTC: INFO: QC.py(180): Changed (2/745) 265 306 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 02:41:29 31 Mar 2017 UTC: INFO: QC.py(180): Changed (4/745) 742:745 to QC_BAD because changed raw cond implies changed raw salinity 02:41:29 31 Mar 2017 UTC: INFO: QC.py(365): Changed (8/745) 242 243 250 269 297 301 302 744 to QC_INTERPOLATED because temperature spikes 02:41:29 31 Mar 2017 UTC: INFO: QC.py(408): Changed (7/745) 242 265 269 297 301 302 306 to QC_INTERPOLATED because conductivity spikes 02:41:29 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/745) 283:287 to QC_BAD because slow apogee CT flow 02:41:29 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/745) 1:6 to QC_BAD because prior to dive start 02:41:29 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/745) 1:6 283:287 742:745 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:41:29 31 Mar 2017 UTC: INFO: QC.py(180): Changed (15/745) 1:6 283:287 742:745 to QC_BAD because changed corrected salin implies changed speed 02:41:30 31 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:41:30 31 Mar 2017 UTC: INFO: QC.py(180): Changed (7/745) 242 243 250 269 297 301 302 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 02:41:30 31 Mar 2017 UTC: INFO: QC.py(180): Changed (2/745) 265 306 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 02:41:30 31 Mar 2017 UTC: INFO: QC.py(180): Changed (7/745) 242 243 250 269 297 301 302 to QC_INTERPOLATED because changed corrected temp implies changed speed 02:41:30 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.49 cm/s 02:41:30 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.12 cm/s 02:41:30 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:41:30 31 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (212/745) 155 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:41:30 31 Mar 2017 UTC: INFO: QC.py(180): Changed (2/745) 301 744 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:41:30 31 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (212/745) 155 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 02:41:30 31 Mar 2017 UTC: INFO: QC.py(180): Changed (2/745) 301 744 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:41:30 31 Mar 2017 UTC: INFO: QC.py(180): Changed (15/745) 1:6 283:287 742:745 to QC_BAD because changed salinity implies changed optode oxygen 02:41:30 31 Mar 2017 UTC: INFO: QC.py(180): Changed (1/745) 306 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 02:41:30 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:41:30 31 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:41:30 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 02:41:30 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 483: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.01% reduction 02:41:30 31 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.483 02:41:30 31 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:41:30 31 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:41:30 31 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:41:31 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 02:41:31 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 02:45:37 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 02:45:39 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 02:45:39 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 02:46:32 31 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:46:32 31 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:46:32 31 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:46:32 31 Mar 2017 UTC /home/sg626/p6260483.log /home/sg626/p6260483.eng /home/sg626/p6260483.asc /home/sg626/p6260483.pro /home/sg626/p6260483.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 02:46:32 31 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:46:32 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:46:32 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:46:32 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:46:32 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:46:32 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:46:32 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:46:32 31 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:46:32 31 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:46:32 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:46:32 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:46:32 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:46:32 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:46:32 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:46:32 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:46:32 31 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:46:32 31 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:46:32 31 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:46:32 31 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:46:32 31 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:46:32 31 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:46:32 31 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:46:32 31 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:46:32 31 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 02:46:32 31 Mar 2017 UTC 06:46:18 31 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 16478 06:46:18 31 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:49:31 31 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 16600 06:49:31 31 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:49:31 31 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 06:49:31 31 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 06:49:31 31 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:49:31 31 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170330204930 ] 06:49:31 31 Mar 2017 UTC: INFO: Base.py(1333): PID:16607 06:49:31 31 Mar 2017 UTC: INFO: Base.py(1375): Started processing 06:49:31 31 Mar 2017 UTC 06:49:31 31 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 06:49:32 31 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 06:49:32 31 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:49:32 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:49:32 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:484 calls_made:1 call_cycle:0 06:49:32 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:49:32 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:484 calls_made:1 call_cycle:0 06:49:32 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:49:32 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:484 calls_made:1 call_cycle:0 06:49:32 31 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:484 calls_made:1 call_cycle:0 2243.9620 -15800.8870 03/31/17 06:43:54 UTC) to sdrifter@soest.hawaii.edu 06:49:32 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:484 calls_made:1 call_cycle:0 06:49:32 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:49:32 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:484 calls_made:1 call_cycle:0 06:49:32 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:49:32 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:484 calls_made:1 call_cycle:0 06:49:32 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:49:32 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:484 calls_made:1 call_cycle:0 06:49:32 31 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:49:32 31 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:49:40 31 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:49:41 31 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:49:41 31 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 06:49:41 31 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:49:42 31 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:49:42 31 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 06:49:45 31 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0484lz 06:49:45 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0484lz.x00 06:49:45 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0484lz.x01 06:49:45 31 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0484lz.r in process_file_group 06:49:45 31 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260484.log 06:49:45 31 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 06:49:45 31 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0484dz 06:49:45 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0484dz.x00 06:49:45 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0484dz.x01 06:49:45 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0484dz.x02 06:49:45 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0484dz.x03 06:49:45 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0484dz.x04 06:49:45 31 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0484dz.r in process_file_group 06:49:46 31 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [484] 06:49:46 31 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [484] 06:49:46 31 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260484) for profiles 06:49:46 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 06:49:46 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/723) 722 to QC_BAD because CT out of water 06:49:46 31 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.082m) 06:49:46 31 Mar 2017 UTC: INFO: QC.py(365): Changed (14/723) 2 237 243 244 249 250 260 268 309:311 313 327 722 to QC_PROBABLY_BAD because raw temperature spikes 06:49:46 31 Mar 2017 UTC: INFO: QC.py(408): Changed (8/723) 237 243 249 268 309:311 313 to QC_PROBABLY_BAD because raw conductivity spikes 06:49:46 31 Mar 2017 UTC: INFO: QC.py(180): Changed (14/723) 2 237 243 244 249 250 260 268 309:311 313 327 722 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 06:49:46 31 Mar 2017 UTC: INFO: QC.py(180): Changed (1/723) 722 to QC_BAD because changed raw cond implies changed raw salinity 06:49:46 31 Mar 2017 UTC: INFO: QC.py(365): Changed (14/723) 2 237 243 244 249 250 260 268 309:311 313 327 722 to QC_INTERPOLATED because temperature spikes 06:49:46 31 Mar 2017 UTC: INFO: QC.py(408): Changed (8/723) 237 243 249 268 309:311 313 to QC_INTERPOLATED because conductivity spikes 06:49:46 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/723) 292:296 to QC_BAD because slow apogee CT flow 06:49:46 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/723) 1:6 to QC_BAD because prior to dive start 06:49:46 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/723) 723 to QC_BAD because end of climb 06:49:46 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/723) 1:6 292:296 722 723 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 06:49:46 31 Mar 2017 UTC: INFO: QC.py(180): Changed (13/723) 1:6 292:296 722 723 to QC_BAD because changed corrected salin implies changed speed 06:49:46 31 Mar 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 721 06:49:47 31 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 06:49:47 31 Mar 2017 UTC: INFO: QC.py(180): Changed (12/723) 237 243 244 249 250 260 268 309:311 313 327 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 06:49:47 31 Mar 2017 UTC: INFO: QC.py(180): Changed (12/723) 237 243 244 249 250 260 268 309:311 313 327 to QC_INTERPOLATED because changed corrected temp implies changed speed 06:49:47 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.90 cm/s 06:49:47 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.00 cm/s 06:49:47 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 06:49:47 31 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (218/723) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 06:49:47 31 Mar 2017 UTC: INFO: QC.py(180): Changed (3/723) 2 311 722 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 06:49:47 31 Mar 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/723) 721 to QC_BAD because slow flow in SBE43 06:49:47 31 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (218/723) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 06:49:47 31 Mar 2017 UTC: INFO: QC.py(180): Changed (3/723) 2 311 722 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 06:49:47 31 Mar 2017 UTC: INFO: QC.py(180): Changed (13/723) 1:6 292:296 722 723 to QC_BAD because changed salinity implies changed optode oxygen 06:49:47 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 06:49:47 31 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 06:49:47 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 06:49:47 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 484: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.80% reduction 06:49:47 31 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.484 06:49:47 31 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:49:47 31 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:49:47 31 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:49:48 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 06:49:48 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 06:53:55 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 06:53:56 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 06:53:56 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 06:54:50 31 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:54:50 31 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:54:50 31 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 06:54:50 31 Mar 2017 UTC /home/sg626/p6260484.log /home/sg626/p6260484.eng /home/sg626/p6260484.asc /home/sg626/p6260484.pro /home/sg626/p6260484.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 06:54:50 31 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:54:50 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:54:50 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:54:50 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:54:50 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:54:50 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:54:50 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:54:50 31 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:54:50 31 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:54:50 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:54:50 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:54:50 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:54:50 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:54:50 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:54:50 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:54:50 31 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:54:50 31 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 06:54:50 31 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 06:54:50 31 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 06:54:50 31 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 06:54:50 31 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:54:50 31 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:54:50 31 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:54:50 31 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 06:54:50 31 Mar 2017 UTC 10:45:52 31 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 22688 10:45:52 31 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:49:11 31 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 22810 10:49:11 31 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:49:11 31 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:49:11 31 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:49:11 31 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:49:11 31 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170331004910 ] 10:49:11 31 Mar 2017 UTC: INFO: Base.py(1333): PID:22817 10:49:11 31 Mar 2017 UTC: INFO: Base.py(1375): Started processing 10:49:11 31 Mar 2017 UTC 10:49:11 31 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:49:12 31 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:49:12 31 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:49:12 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:49:12 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:485 calls_made:1 call_cycle:0 10:49:12 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:49:12 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:485 calls_made:1 call_cycle:0 10:49:12 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:49:12 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:485 calls_made:1 call_cycle:0 10:49:12 31 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:485 calls_made:1 call_cycle:0 2244.6240 -15800.9870 03/31/17 10:43:31 UTC) to sdrifter@soest.hawaii.edu 10:49:12 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:485 calls_made:1 call_cycle:0 10:49:12 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:49:12 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:485 calls_made:1 call_cycle:0 10:49:12 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:49:12 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:485 calls_made:1 call_cycle:0 10:49:12 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:49:12 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:485 calls_made:1 call_cycle:0 10:49:12 31 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:49:12 31 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:49:20 31 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:49:22 31 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:49:22 31 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:49:22 31 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:49:22 31 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:49:22 31 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:49:25 31 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0485lz 10:49:25 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0485lz.x00 10:49:25 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0485lz.x01 10:49:25 31 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0485lz.r in process_file_group 10:49:25 31 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260485.log 10:49:25 31 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:49:25 31 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0485dz 10:49:25 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0485dz.x00 10:49:25 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0485dz.x01 10:49:25 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0485dz.x02 10:49:25 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0485dz.x03 10:49:25 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0485dz.x04 10:49:25 31 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0485dz.r in process_file_group 10:49:26 31 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [485] 10:49:26 31 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [485] 10:49:26 31 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260485) for profiles 10:49:26 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 10:49:26 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/715) 714 715 to QC_BAD because CT out of water 10:49:26 31 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.131m) 10:49:26 31 Mar 2017 UTC: INFO: QC.py(365): Changed (7/715) 239 240 279 311 312 438 653 to QC_PROBABLY_BAD because raw temperature spikes 10:49:26 31 Mar 2017 UTC: INFO: QC.py(377): Changed (1/715) 714 to QC_BAD because raw salinity below bound 10:49:26 31 Mar 2017 UTC: INFO: QC.py(408): Changed (5/715) 239 240 311 312 438 to QC_PROBABLY_BAD because raw conductivity spikes 10:49:26 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/715) 713 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 10:49:26 31 Mar 2017 UTC: INFO: QC.py(180): Changed (7/715) 239 240 279 311 312 438 653 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 10:49:26 31 Mar 2017 UTC: INFO: QC.py(180): Changed (2/715) 713 715 to QC_BAD because changed raw cond implies changed raw salinity 10:49:26 31 Mar 2017 UTC: INFO: QC.py(365): Changed (7/715) 239 240 279 311 312 438 653 to QC_INTERPOLATED because temperature spikes 10:49:26 31 Mar 2017 UTC: INFO: QC.py(377): Changed (1/715) 714 to QC_BAD because salinity below bound 10:49:26 31 Mar 2017 UTC: INFO: QC.py(408): Changed (5/715) 239 240 311 312 438 to QC_INTERPOLATED because conductivity spikes 10:49:26 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/715) 713 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 10:49:26 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/715) 277:281 to QC_BAD because slow apogee CT flow 10:49:26 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/715) 1:6 to QC_BAD because prior to dive start 10:49:26 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/715) 712 to QC_BAD because end of climb 10:49:26 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/715) 1:6 277:281 712:715 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:49:26 31 Mar 2017 UTC: INFO: QC.py(180): Changed (15/715) 1:6 277:281 712:715 to QC_BAD because changed corrected salin implies changed speed 10:49:27 31 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 10:49:27 31 Mar 2017 UTC: INFO: QC.py(180): Changed (6/715) 239 240 311 312 438 653 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 10:49:27 31 Mar 2017 UTC: INFO: QC.py(180): Changed (6/715) 239 240 311 312 438 653 to QC_INTERPOLATED because changed corrected temp implies changed speed 10:49:27 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.15 cm/s 10:49:27 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.24 cm/s 10:49:27 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:49:27 31 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (209/715) 154 155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:49:27 31 Mar 2017 UTC: INFO: QC.py(180): Changed (3/715) 311 438 653 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 10:49:27 31 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (209/715) 154 155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 10:49:27 31 Mar 2017 UTC: INFO: QC.py(180): Changed (3/715) 311 438 653 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 10:49:27 31 Mar 2017 UTC: INFO: QC.py(180): Changed (15/715) 1:6 277:281 712:715 to QC_BAD because changed salinity implies changed optode oxygen 10:49:27 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:49:27 31 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:49:27 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 10:49:27 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 485: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.10% reduction 10:49:27 31 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.485 10:49:27 31 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:49:27 31 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:49:27 31 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:49:28 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 10:49:28 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 10:53:34 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 10:53:36 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 10:53:36 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 10:54:29 31 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:54:29 31 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:54:29 31 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 10:54:29 31 Mar 2017 UTC /home/sg626/p6260485.log /home/sg626/p6260485.eng /home/sg626/p6260485.asc /home/sg626/p6260485.pro /home/sg626/p6260485.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 10:54:29 31 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:54:29 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:54:29 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:54:29 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:54:29 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:54:29 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:54:29 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:54:29 31 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:54:29 31 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:54:29 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:54:29 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:54:29 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:54:29 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:54:29 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:54:29 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:54:29 31 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:54:29 31 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:54:29 31 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:54:29 31 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:54:29 31 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:54:29 31 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:54:29 31 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:54:29 31 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:54:29 31 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 10:54:29 31 Mar 2017 UTC 14:48:54 31 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 29521 14:48:54 31 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:52:07 31 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 29665 14:52:07 31 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:52:07 31 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 14:52:07 31 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 14:52:07 31 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:52:07 31 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170331045207 ] 14:52:07 31 Mar 2017 UTC: INFO: Base.py(1333): PID:29672 14:52:07 31 Mar 2017 UTC: INFO: Base.py(1375): Started processing 14:52:07 31 Mar 2017 UTC 14:52:07 31 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 14:52:09 31 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 14:52:09 31 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:52:09 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:52:09 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:486 calls_made:1 call_cycle:0 14:52:09 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:52:09 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:486 calls_made:1 call_cycle:0 14:52:09 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:52:09 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:486 calls_made:1 call_cycle:0 14:52:09 31 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:486 calls_made:1 call_cycle:0 2244.9600 -15801.2350 03/31/17 14:46:31 UTC) to sdrifter@soest.hawaii.edu 14:52:09 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:486 calls_made:1 call_cycle:0 14:52:09 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:52:09 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:486 calls_made:1 call_cycle:0 14:52:09 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:52:09 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:486 calls_made:1 call_cycle:0 14:52:09 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:52:09 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:486 calls_made:1 call_cycle:0 14:52:09 31 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:52:09 31 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:52:17 31 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:52:18 31 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:52:18 31 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 14:52:18 31 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:52:18 31 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:52:18 31 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 14:52:22 31 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0486lz 14:52:22 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0486lz.x00 14:52:22 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0486lz.x01 14:52:22 31 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0486lz.r in process_file_group 14:52:22 31 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260486.log 14:52:22 31 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 14:52:22 31 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0486dz 14:52:22 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0486dz.x00 14:52:22 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0486dz.x01 14:52:22 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0486dz.x02 14:52:22 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0486dz.x03 14:52:22 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0486dz.x04 14:52:22 31 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0486dz.r in process_file_group 14:52:22 31 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [486] 14:52:22 31 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [486] 14:52:22 31 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260486) for profiles 14:52:22 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 14:52:22 31 Mar 2017 UTC: INFO: QC.py(365): Changed (10/720) 2 258:260 265 266 270 312 315 318 to QC_PROBABLY_BAD because raw temperature spikes 14:52:22 31 Mar 2017 UTC: INFO: QC.py(408): Changed (8/720) 258 259 265 266 270 312 315 318 to QC_PROBABLY_BAD because raw conductivity spikes 14:52:22 31 Mar 2017 UTC: INFO: QC.py(180): Changed (10/720) 2 258:260 265 266 270 312 315 318 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:52:23 31 Mar 2017 UTC: INFO: QC.py(365): Changed (10/720) 2 258:260 265 266 270 312 315 318 to QC_INTERPOLATED because temperature spikes 14:52:23 31 Mar 2017 UTC: INFO: QC.py(408): Changed (8/720) 258 259 265 266 270 312 315 318 to QC_INTERPOLATED because conductivity spikes 14:52:23 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/720) 289:293 to QC_BAD because slow apogee CT flow 14:52:23 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/720) 1:6 to QC_BAD because prior to dive start 14:52:23 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/720) 1:6 289:293 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:52:23 31 Mar 2017 UTC: INFO: QC.py(180): Changed (11/720) 1:6 289:293 to QC_BAD because changed corrected salin implies changed speed 14:52:23 31 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:52:23 31 Mar 2017 UTC: INFO: QC.py(180): Changed (9/720) 258:260 265 266 270 312 315 318 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 14:52:23 31 Mar 2017 UTC: INFO: QC.py(180): Changed (9/720) 258:260 265 266 270 312 315 318 to QC_INTERPOLATED because changed corrected temp implies changed speed 14:52:23 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.95 cm/s 14:52:23 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.04 cm/s 14:52:23 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:52:23 31 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (213/720) 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:52:23 31 Mar 2017 UTC: INFO: QC.py(180): Changed (2/720) 2 266 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 14:52:23 31 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (213/720) 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 14:52:23 31 Mar 2017 UTC: INFO: QC.py(180): Changed (2/720) 2 266 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 14:52:23 31 Mar 2017 UTC: INFO: QC.py(180): Changed (11/720) 1:6 289:293 to QC_BAD because changed salinity implies changed optode oxygen 14:52:23 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:52:23 31 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:52:23 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 14:52:24 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 486: Data set size for profile, binned and kkyy files reduced by 11 points, a 1.53% reduction 14:52:24 31 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.486 14:52:24 31 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:52:24 31 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:52:24 31 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:52:24 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 14:52:24 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 14:56:31 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 14:56:32 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 14:56:32 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 14:57:26 31 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:57:26 31 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:57:26 31 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:57:26 31 Mar 2017 UTC /home/sg626/p6260486.log /home/sg626/p6260486.eng /home/sg626/p6260486.asc /home/sg626/p6260486.pro /home/sg626/p6260486.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 14:57:26 31 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:57:26 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:57:26 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:57:26 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:57:26 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:57:26 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:57:26 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:57:26 31 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:57:26 31 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:57:26 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:57:26 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:57:26 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:57:26 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:57:26 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:57:26 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:57:26 31 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:57:26 31 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:57:26 31 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:57:26 31 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:57:26 31 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:57:26 31 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:57:26 31 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:57:26 31 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:57:26 31 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 14:57:26 31 Mar 2017 UTC 18:59:42 31 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 3839 18:59:42 31 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:03:15 31 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 4214 19:03:15 31 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:03:15 31 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:03:15 31 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:03:15 31 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:03:15 31 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170331090315 ] 19:03:15 31 Mar 2017 UTC: INFO: Base.py(1333): PID:4222 19:03:15 31 Mar 2017 UTC: INFO: Base.py(1375): Started processing 19:03:15 31 Mar 2017 UTC 19:03:15 31 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:03:17 31 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:03:17 31 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:03:17 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:03:17 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:487 calls_made:1 call_cycle:0 19:03:17 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:03:17 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:487 calls_made:1 call_cycle:0 19:03:17 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:03:17 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:487 calls_made:1 call_cycle:0 19:03:17 31 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:487 calls_made:1 call_cycle:0 2245.6970 -15801.1940 03/31/17 18:57:18 UTC) to sdrifter@soest.hawaii.edu 19:03:17 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:487 calls_made:1 call_cycle:0 19:03:17 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:03:17 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:487 calls_made:1 call_cycle:0 19:03:17 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:03:17 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:487 calls_made:1 call_cycle:0 19:03:17 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:03:17 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:487 calls_made:1 call_cycle:0 19:03:17 31 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:03:17 31 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:03:24 31 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:03:26 31 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:03:26 31 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:03:26 31 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:03:26 31 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:03:26 31 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:03:30 31 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0487lz 19:03:30 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0487lz.x00 19:03:30 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0487lz.x01 19:03:30 31 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0487lz.r in process_file_group 19:03:30 31 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260487.log 19:03:30 31 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:03:30 31 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0487dz 19:03:30 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0487dz.x00 19:03:30 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0487dz.x01 19:03:30 31 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0487dz.r in process_file_group 19:03:30 31 Mar 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0487dz.r - expected 0x3888820790, generated 0xd1576fc3 19:03:30 31 Mar 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0487dz.r - expected 0x910f45f4, generated 0x4eb6 19:03:30 31 Mar 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0487dz.r - skipping 19:03:30 31 Mar 2017 UTC: ERROR: Base.py(272): Could not process sg0487dz - skipping 19:03:30 31 Mar 2017 UTC: WARNING: Base.py(1624): No dives to process 19:03:30 31 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [487] 19:03:30 31 Mar 2017 UTC: INFO: Base.py(1780): No dives found to profile 19:03:30 31 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.487 19:03:30 31 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:03:30 31 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:03:30 31 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:03:30 31 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:03:30 31 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:03:30 31 Mar 2017 UTC: ERROR: Base.py(1960): Dive [487] failed to process completely. The following files were not processed completely: /home/sg626/sg0487dz.r Glider logout not seen - retransmissions from glider possible Consult baselog_170331090315 for details. 19:03:30 31 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:03:30 31 Mar 2017 UTC /home/sg626/p6260487.log 19:03:30 31 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:03:30 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:03:30 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:03:30 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:03:30 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:03:30 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:03:30 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:03:30 31 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:03:30 31 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:03:30 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:03:30 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:03:30 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:03:30 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:03:30 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:03:30 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:03:30 31 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:03:30 31 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:03:30 31 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:03:30 31 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:03:30 31 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:03:30 31 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:03:30 31 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:03:30 31 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:03:30 31 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 19:03:30 31 Mar 2017 UTC 19:09:08 31 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 4518 19:09:08 31 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:11:20 31 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 4715 19:11:20 31 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:11:20 31 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:11:20 31 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:11:20 31 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:11:20 31 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170331091120 ] 19:11:20 31 Mar 2017 UTC: INFO: Base.py(1333): PID:4722 19:11:20 31 Mar 2017 UTC: INFO: Base.py(1375): Started processing 19:11:20 31 Mar 2017 UTC 19:11:20 31 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:11:22 31 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:11:22 31 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:11:22 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:11:22 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:487 calls_made:4 call_cycle:0 19:11:22 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:11:22 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:487 calls_made:4 call_cycle:0 19:11:22 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:11:22 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:487 calls_made:4 call_cycle:0 19:11:22 31 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:487 calls_made:4 call_cycle:0 2245.6970 -15801.1940 03/31/17 18:57:18 UTC) to sdrifter@soest.hawaii.edu 19:11:22 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:487 calls_made:4 call_cycle:0 19:11:22 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:11:22 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:487 calls_made:4 call_cycle:0 19:11:22 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:11:22 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:487 calls_made:4 call_cycle:0 19:11:22 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:11:22 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:487 calls_made:4 call_cycle:0 19:11:22 31 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:11:22 31 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:11:29 31 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:11:31 31 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:11:31 31 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:11:31 31 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:11:31 31 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:11:31 31 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:11:35 31 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:11:35 31 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0487dz 19:11:35 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0487dz.x00 19:11:35 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0487dz.x01 19:11:35 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0487dz.x02 19:11:35 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0487dz.x03 19:11:35 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0487dz.x04 19:11:35 31 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0487dz.r in process_file_group 19:11:35 31 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [487] 19:11:35 31 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [487] 19:11:35 31 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260487) for profiles 19:11:35 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 19:11:35 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/748) 748 to QC_BAD because CT out of water 19:11:35 31 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.049m) 19:11:35 31 Mar 2017 UTC: INFO: QC.py(365): Changed (5/748) 267 286 297 305 317 to QC_PROBABLY_BAD because raw temperature spikes 19:11:35 31 Mar 2017 UTC: INFO: QC.py(408): Changed (5/748) 266 267 286 305 317 to QC_PROBABLY_BAD because raw conductivity spikes 19:11:36 31 Mar 2017 UTC: INFO: QC.py(180): Changed (5/748) 267 286 297 305 317 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:11:36 31 Mar 2017 UTC: INFO: QC.py(180): Changed (1/748) 266 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 19:11:36 31 Mar 2017 UTC: INFO: QC.py(180): Changed (1/748) 748 to QC_BAD because changed raw cond implies changed raw salinity 19:11:36 31 Mar 2017 UTC: INFO: QC.py(365): Changed (5/748) 267 286 297 305 317 to QC_INTERPOLATED because temperature spikes 19:11:36 31 Mar 2017 UTC: INFO: QC.py(408): Changed (5/748) 266 267 286 305 317 to QC_INTERPOLATED because conductivity spikes 19:11:36 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/748) 295:299 to QC_BAD because slow apogee CT flow 19:11:36 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/748) 1:6 to QC_BAD because prior to dive start 19:11:36 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/748) 1:6 295:299 748 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:11:36 31 Mar 2017 UTC: INFO: QC.py(180): Changed (12/748) 1:6 295:299 748 to QC_BAD because changed corrected salin implies changed speed 19:11:36 31 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:11:36 31 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 487 interp_salinity data_points in_between 685 746 % suspect thermal-inertia points 687 688 19:11:36 31 Mar 2017 UTC: INFO: QC.py(180): Changed (4/748) 267 286 305 317 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 19:11:36 31 Mar 2017 UTC: INFO: QC.py(180): Changed (1/748) 266 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 19:11:36 31 Mar 2017 UTC: INFO: QC.py(180): Changed (4/748) 267 286 305 317 to QC_INTERPOLATED because changed corrected temp implies changed speed 19:11:36 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.03 cm/s 19:11:36 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.31 cm/s 19:11:36 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:11:36 31 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (219/748) 168:170 172:175 177:180 182:185 187:190 192:195 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:11:36 31 Mar 2017 UTC: INFO: QC.py(180): Changed (1/748) 286 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 19:11:36 31 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (219/748) 168:170 172:175 177:180 182:185 187:190 192:195 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 19:11:36 31 Mar 2017 UTC: INFO: QC.py(180): Changed (1/748) 286 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 19:11:36 31 Mar 2017 UTC: INFO: QC.py(180): Changed (12/748) 1:6 295:299 748 to QC_BAD because changed salinity implies changed optode oxygen 19:11:36 31 Mar 2017 UTC: INFO: QC.py(180): Changed (1/748) 266 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 19:11:36 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:11:36 31 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:11:36 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 19:11:37 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 487: Data set size for profile, binned and kkyy files reduced by 12 points, a 1.60% reduction 19:11:37 31 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.487 19:11:37 31 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:11:37 31 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:11:37 31 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:11:37 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 19:11:37 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 19:15:46 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 19:15:47 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 19:15:47 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 19:16:41 31 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:16:41 31 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:16:41 31 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:16:41 31 Mar 2017 UTC /home/sg626/p6260487.eng /home/sg626/p6260487.asc /home/sg626/p6260487.pro /home/sg626/p6260487.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 19:16:41 31 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:16:41 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:16:41 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:16:41 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:16:41 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:16:41 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:16:41 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:16:41 31 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:16:41 31 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:16:41 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:16:41 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:16:41 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:16:41 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:16:41 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:16:41 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:16:41 31 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:16:41 31 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:16:41 31 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:16:41 31 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:16:41 31 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:16:41 31 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:16:41 31 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:16:41 31 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:16:41 31 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 19:16:41 31 Mar 2017 UTC 23:09:12 31 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 10630 23:09:12 31 Mar 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 23:12:22 31 Mar 2017 UTC: INFO: BaseLog.py(77): Process id = 10844 23:12:22 31 Mar 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:12:22 31 Mar 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:12:22 31 Mar 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:12:22 31 Mar 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:12:22 31 Mar 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170331131221 ] 23:12:22 31 Mar 2017 UTC: INFO: Base.py(1333): PID:10852 23:12:22 31 Mar 2017 UTC: INFO: Base.py(1375): Started processing 23:12:22 31 Mar 2017 UTC 23:12:22 31 Mar 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:12:23 31 Mar 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:12:23 31 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:12:23 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:12:23 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:488 calls_made:1 call_cycle:0 23:12:23 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:12:23 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:488 calls_made:1 call_cycle:0 23:12:23 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:12:23 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:488 calls_made:1 call_cycle:0 23:12:23 31 Mar 2017 UTC: INFO: Base.py(975): Sending GPS (dive:488 calls_made:1 call_cycle:0 2246.0300 -15801.4180 03/31/17 23:06:48 UTC) to sdrifter@soest.hawaii.edu 23:12:23 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:488 calls_made:1 call_cycle:0 23:12:23 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:12:23 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:488 calls_made:1 call_cycle:0 23:12:23 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:12:23 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:488 calls_made:1 call_cycle:0 23:12:23 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:12:23 31 Mar 2017 UTC: INFO: CommLog.py(51): prefix:dive:488 calls_made:1 call_cycle:0 23:12:23 31 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:12:23 31 Mar 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:12:31 31 Mar 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:12:32 31 Mar 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:12:32 31 Mar 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:12:32 31 Mar 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:12:32 31 Mar 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:12:32 31 Mar 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:12:36 31 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0488lz 23:12:36 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0488lz.x00 23:12:36 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0488lz.x01 23:12:36 31 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0488lz.r in process_file_group 23:12:36 31 Mar 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260488.log 23:12:36 31 Mar 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:12:36 31 Mar 2017 UTC: INFO: Base.py(368): Processing ./sg0488dz 23:12:36 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0488dz.x00 23:12:36 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0488dz.x01 23:12:36 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0488dz.x02 23:12:36 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0488dz.x03 23:12:36 31 Mar 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0488dz.x04 23:12:36 31 Mar 2017 UTC: INFO: Base.py(472): Processing ./sg0488dz.r in process_file_group 23:12:37 31 Mar 2017 UTC: INFO: Base.py(1622): Processed dive(s) [488] 23:12:37 31 Mar 2017 UTC: INFO: Base.py(1656): Dives to process = [488] 23:12:37 31 Mar 2017 UTC: INFO: Base.py(1719): Processing (./p6260488) for profiles 23:12:37 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 23:12:37 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/709) 708 709 to QC_BAD because CT out of water 23:12:37 31 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.137m) 23:12:37 31 Mar 2017 UTC: INFO: QC.py(365): Changed (7/709) 2 3 246 278 279 287 301 to QC_PROBABLY_BAD because raw temperature spikes 23:12:37 31 Mar 2017 UTC: INFO: QC.py(408): Changed (4/709) 278 279 301 319 to QC_PROBABLY_BAD because raw conductivity spikes 23:12:37 31 Mar 2017 UTC: INFO: QC.py(180): Changed (7/709) 2 3 246 278 279 287 301 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 23:12:37 31 Mar 2017 UTC: INFO: QC.py(180): Changed (1/709) 319 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 23:12:37 31 Mar 2017 UTC: INFO: QC.py(180): Changed (2/709) 708 709 to QC_BAD because changed raw cond implies changed raw salinity 23:12:37 31 Mar 2017 UTC: INFO: QC.py(365): Changed (7/709) 2 3 246 278 279 287 301 to QC_INTERPOLATED because temperature spikes 23:12:37 31 Mar 2017 UTC: INFO: QC.py(408): Changed (4/709) 278 279 301 319 to QC_INTERPOLATED because conductivity spikes 23:12:37 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/709) 285:289 to QC_BAD because slow apogee CT flow 23:12:37 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/709) 1:6 to QC_BAD because prior to dive start 23:12:37 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/709) 706 707 to QC_BAD because end of climb 23:12:37 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/709) 1:6 285:289 706:709 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 23:12:37 31 Mar 2017 UTC: INFO: QC.py(180): Changed (15/709) 1:6 285:289 706:709 to QC_BAD because changed corrected salin implies changed speed 23:12:38 31 Mar 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 23:12:38 31 Mar 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 488 interp_salinity data_points in_between 460 467 % suspect thermal-inertia points 462 23:12:38 31 Mar 2017 UTC: INFO: QC.py(180): Changed (4/709) 246 278 279 301 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 23:12:38 31 Mar 2017 UTC: INFO: QC.py(180): Changed (1/709) 319 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 23:12:38 31 Mar 2017 UTC: INFO: QC.py(180): Changed (4/709) 246 278 279 301 to QC_INTERPOLATED because changed corrected temp implies changed speed 23:12:38 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.15 cm/s 23:12:38 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.10 cm/s 23:12:38 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 23:12:38 31 Mar 2017 UTC: INFO: sbe43_ext.py(236): Changed (208/709) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 23:12:38 31 Mar 2017 UTC: INFO: QC.py(180): Changed (4/709) 2 3 246 301 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 23:12:38 31 Mar 2017 UTC: INFO: aa4330_ext.py(316): Changed (208/709) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 23:12:38 31 Mar 2017 UTC: INFO: aa4330_ext.py(320): Changed (3/709) 703 705 706 to QC_BAD because bad aa4330 oyxgen 23:12:38 31 Mar 2017 UTC: INFO: QC.py(180): Changed (4/709) 2 3 246 301 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 23:12:38 31 Mar 2017 UTC: INFO: QC.py(180): Changed (14/709) 1:6 285:289 707:709 to QC_BAD because changed salinity implies changed optode oxygen 23:12:38 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 23:12:38 31 Mar 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 23:12:38 31 Mar 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 23:12:38 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 488: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.12% reduction 23:12:38 31 Mar 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.488 23:12:38 31 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:12:38 31 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:12:38 31 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:12:39 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 23:12:39 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 23:16:47 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 23:16:49 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 23:16:49 31 Mar 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 23:17:43 31 Mar 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:17:43 31 Mar 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:17:43 31 Mar 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:17:43 31 Mar 2017 UTC /home/sg626/p6260488.log /home/sg626/p6260488.eng /home/sg626/p6260488.asc /home/sg626/p6260488.pro /home/sg626/p6260488.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 23:17:43 31 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:17:43 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:17:43 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:17:43 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:17:43 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:17:43 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:17:43 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:17:43 31 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:17:43 31 Mar 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:17:43 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:17:43 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:17:43 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:17:43 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:17:43 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:17:43 31 Mar 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:17:43 31 Mar 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:17:43 31 Mar 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:17:43 31 Mar 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:17:43 31 Mar 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:17:43 31 Mar 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:17:43 31 Mar 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:17:43 31 Mar 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:17:43 31 Mar 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:17:43 31 Mar 2017 UTC: INFO: Base.py(2265): Finished processing 23:17:43 31 Mar 2017 UTC 03:07:45 01 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 16975 03:07:45 01 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:11:05 01 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 17185 03:11:05 01 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:11:05 01 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:11:05 01 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:11:05 01 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:11:05 01 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170331171104 ] 03:11:05 01 Apr 2017 UTC: INFO: Base.py(1333): PID:17192 03:11:05 01 Apr 2017 UTC: INFO: Base.py(1375): Started processing 03:11:05 01 Apr 2017 UTC 03:11:05 01 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:11:06 01 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:11:06 01 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:11:06 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:11:06 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:489 calls_made:1 call_cycle:0 03:11:06 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:11:06 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:489 calls_made:1 call_cycle:0 03:11:06 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:11:06 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:489 calls_made:1 call_cycle:0 03:11:06 01 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:489 calls_made:1 call_cycle:0 2246.7130 -15801.8820 04/01/17 03:05:25 UTC) to sdrifter@soest.hawaii.edu 03:11:06 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:489 calls_made:1 call_cycle:0 03:11:06 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:11:06 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:489 calls_made:1 call_cycle:0 03:11:06 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:11:06 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:489 calls_made:1 call_cycle:0 03:11:06 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:11:06 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:489 calls_made:1 call_cycle:0 03:11:06 01 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:11:06 01 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:11:14 01 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:11:15 01 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:11:15 01 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:11:15 01 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:11:15 01 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:11:15 01 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:11:19 01 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0489lz 03:11:19 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0489lz.x00 03:11:19 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0489lz.x01 03:11:19 01 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0489lz.r in process_file_group 03:11:19 01 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260489.log 03:11:19 01 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:11:19 01 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0489dz 03:11:19 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0489dz.x00 03:11:19 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0489dz.x01 03:11:19 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0489dz.x02 03:11:19 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0489dz.x03 03:11:19 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0489dz.x04 03:11:19 01 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0489dz.r in process_file_group 03:11:20 01 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [489] 03:11:20 01 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [489] 03:11:20 01 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260489) for profiles 03:11:20 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 03:11:20 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/726) 724:726 to QC_BAD because CT out of water 03:11:20 01 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.074m) 03:11:20 01 Apr 2017 UTC: INFO: QC.py(365): Changed (4/726) 313 316 724 725 to QC_PROBABLY_BAD because raw temperature spikes 03:11:20 01 Apr 2017 UTC: INFO: QC.py(408): Changed (2/726) 2 316 to QC_PROBABLY_BAD because raw conductivity spikes 03:11:20 01 Apr 2017 UTC: INFO: QC.py(180): Changed (4/726) 313 316 724 725 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 03:11:20 01 Apr 2017 UTC: INFO: QC.py(180): Changed (1/726) 2 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 03:11:20 01 Apr 2017 UTC: INFO: QC.py(180): Changed (3/726) 724:726 to QC_BAD because changed raw cond implies changed raw salinity 03:11:20 01 Apr 2017 UTC: INFO: QC.py(365): Changed (4/726) 313 316 724 725 to QC_INTERPOLATED because temperature spikes 03:11:20 01 Apr 2017 UTC: INFO: QC.py(408): Changed (2/726) 2 316 to QC_INTERPOLATED because conductivity spikes 03:11:20 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/726) 294:298 to QC_BAD because slow apogee CT flow 03:11:20 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/726) 1:6 to QC_BAD because prior to dive start 03:11:20 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/726) 1:6 294:298 724:726 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:11:20 01 Apr 2017 UTC: INFO: QC.py(180): Changed (14/726) 1:6 294:298 724:726 to QC_BAD because changed corrected salin implies changed speed 03:11:21 01 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 03:11:21 01 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 489 interp_salinity data_points in_between 371 423 % suspect thermal-inertia points 419 420 03:11:21 01 Apr 2017 UTC: INFO: QC.py(180): Changed (2/726) 313 316 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 03:11:21 01 Apr 2017 UTC: INFO: QC.py(180): Changed (2/726) 313 316 to QC_INTERPOLATED because changed corrected temp implies changed speed 03:11:21 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.80 cm/s 03:11:21 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.09 cm/s 03:11:21 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:11:21 01 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (202/726) 163:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:11:21 01 Apr 2017 UTC: INFO: QC.py(180): Changed (3/726) 316 724 725 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:11:21 01 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (202/726) 163:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 03:11:21 01 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/726) 3 to QC_BAD because bad aa4330 oyxgen 03:11:21 01 Apr 2017 UTC: INFO: QC.py(180): Changed (3/726) 316 724 725 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 03:11:21 01 Apr 2017 UTC: INFO: QC.py(180): Changed (13/726) 1 2 4:6 294:298 724:726 to QC_BAD because changed salinity implies changed optode oxygen 03:11:21 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:11:21 01 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:11:21 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 03:11:21 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 489: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.93% reduction 03:11:21 01 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.489 03:11:21 01 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:11:21 01 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:11:21 01 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:11:22 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 03:11:22 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 03:15:32 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 03:15:33 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 03:15:33 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 03:16:28 01 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:16:28 01 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:16:28 01 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:16:28 01 Apr 2017 UTC /home/sg626/p6260489.log /home/sg626/p6260489.eng /home/sg626/p6260489.asc /home/sg626/p6260489.pro /home/sg626/p6260489.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 03:16:28 01 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:16:28 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:16:28 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:16:28 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:16:28 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:16:28 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:16:28 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:16:28 01 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:16:28 01 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:16:28 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:16:28 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:16:28 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:16:28 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:16:28 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:16:28 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:16:28 01 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:16:28 01 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:16:28 01 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:16:28 01 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:16:28 01 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:16:28 01 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:16:28 01 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:16:28 01 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:16:28 01 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 03:16:28 01 Apr 2017 UTC 07:06:51 01 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 23468 07:06:51 01 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:10:01 01 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 23602 07:10:01 01 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:10:01 01 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:10:01 01 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:10:01 01 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:10:01 01 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170331211000 ] 07:10:01 01 Apr 2017 UTC: INFO: Base.py(1333): PID:23610 07:10:01 01 Apr 2017 UTC: INFO: Base.py(1375): Started processing 07:10:01 01 Apr 2017 UTC 07:10:01 01 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:10:02 01 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:10:02 01 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:10:02 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:10:02 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:490 calls_made:1 call_cycle:0 07:10:02 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:10:02 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:490 calls_made:1 call_cycle:0 07:10:02 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:10:02 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:490 calls_made:1 call_cycle:0 07:10:02 01 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:490 calls_made:1 call_cycle:0 2247.7090 -15801.6080 04/01/17 07:04:24 UTC) to sdrifter@soest.hawaii.edu 07:10:03 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:490 calls_made:1 call_cycle:0 07:10:03 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:10:03 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:490 calls_made:1 call_cycle:0 07:10:03 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:10:03 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:490 calls_made:1 call_cycle:0 07:10:03 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:10:03 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:490 calls_made:1 call_cycle:0 07:10:03 01 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:10:03 01 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:10:10 01 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:10:12 01 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:10:12 01 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:10:12 01 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:10:12 01 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:10:12 01 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:10:16 01 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0490lz 07:10:16 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0490lz.x00 07:10:16 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0490lz.x01 07:10:16 01 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0490lz.r in process_file_group 07:10:16 01 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260490.log 07:10:16 01 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:10:16 01 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0490dz 07:10:16 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0490dz.x00 07:10:16 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0490dz.x01 07:10:16 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0490dz.x02 07:10:16 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0490dz.x03 07:10:16 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0490dz.x04 07:10:16 01 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0490dz.r in process_file_group 07:10:16 01 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [490] 07:10:16 01 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [490] 07:10:16 01 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260490) for profiles 07:10:16 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 07:10:17 01 Apr 2017 UTC: INFO: QC.py(365): Changed (4/721) 272 288:290 to QC_PROBABLY_BAD because raw temperature spikes 07:10:17 01 Apr 2017 UTC: INFO: QC.py(408): Changed (3/721) 272 290 304 to QC_PROBABLY_BAD because raw conductivity spikes 07:10:17 01 Apr 2017 UTC: INFO: QC.py(180): Changed (4/721) 272 288:290 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:10:17 01 Apr 2017 UTC: INFO: QC.py(180): Changed (1/721) 304 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 07:10:17 01 Apr 2017 UTC: INFO: QC.py(365): Changed (4/721) 272 288:290 to QC_INTERPOLATED because temperature spikes 07:10:17 01 Apr 2017 UTC: INFO: QC.py(408): Changed (3/721) 272 290 304 to QC_INTERPOLATED because conductivity spikes 07:10:17 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/721) 288:292 to QC_BAD because slow apogee CT flow 07:10:17 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/721) 1:6 to QC_BAD because prior to dive start 07:10:17 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/721) 1:6 288:292 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:10:17 01 Apr 2017 UTC: INFO: QC.py(180): Changed (11/721) 1:6 288:292 to QC_BAD because changed corrected salin implies changed speed 07:10:17 01 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:10:17 01 Apr 2017 UTC: INFO: QC.py(180): Changed (1/721) 272 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 07:10:17 01 Apr 2017 UTC: INFO: QC.py(180): Changed (1/721) 304 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 07:10:17 01 Apr 2017 UTC: INFO: QC.py(180): Changed (1/721) 272 to QC_INTERPOLATED because changed corrected temp implies changed speed 07:10:17 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.54 cm/s 07:10:17 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.24 cm/s 07:10:17 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:10:17 01 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (206/721) 164 165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:10:17 01 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (206/721) 164 165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 07:10:17 01 Apr 2017 UTC: INFO: QC.py(180): Changed (11/721) 1:6 288:292 to QC_BAD because changed salinity implies changed optode oxygen 07:10:17 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:10:17 01 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:10:17 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 07:10:18 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 490: Data set size for profile, binned and kkyy files reduced by 11 points, a 1.53% reduction 07:10:18 01 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.490 07:10:18 01 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:10:18 01 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:10:18 01 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:10:18 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 07:10:18 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:14:26 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 07:14:28 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:14:28 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:15:23 01 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:15:23 01 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:15:23 01 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:15:23 01 Apr 2017 UTC /home/sg626/p6260490.log /home/sg626/p6260490.eng /home/sg626/p6260490.asc /home/sg626/p6260490.pro /home/sg626/p6260490.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:15:23 01 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:15:23 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:15:23 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:15:23 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:15:23 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:15:23 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:15:23 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:15:23 01 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:15:23 01 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:15:23 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:15:23 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:15:23 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:15:23 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:15:23 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:15:23 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:15:23 01 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:15:23 01 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:15:23 01 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:15:23 01 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:15:23 01 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:15:23 01 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:15:23 01 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:15:23 01 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:15:23 01 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 07:15:23 01 Apr 2017 UTC 11:16:09 01 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 30379 11:16:09 01 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 11:16:20 01 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 30460 11:16:20 01 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:16:20 01 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 11:16:20 01 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 11:16:20 01 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:16:20 01 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170401011619 ] 11:16:20 01 Apr 2017 UTC: INFO: Base.py(1333): PID:30467 11:16:20 01 Apr 2017 UTC: INFO: Base.py(1375): Started processing 11:16:20 01 Apr 2017 UTC 11:16:20 01 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 11:16:21 01 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 11:16:21 01 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:16:21 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:16:21 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:491 calls_made:1 call_cycle:0 11:16:21 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:16:21 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:491 calls_made:1 call_cycle:0 11:16:21 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:16:21 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:491 calls_made:1 call_cycle:0 11:16:21 01 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:491 calls_made:1 call_cycle:0 2248.5090 -15801.2460 04/01/17 11:13:31 UTC) to sdrifter@soest.hawaii.edu 11:16:21 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:491 calls_made:1 call_cycle:0 11:16:21 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:16:21 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:491 calls_made:1 call_cycle:0 11:16:21 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:16:21 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:491 calls_made:1 call_cycle:0 11:16:21 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:16:21 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:491 calls_made:1 call_cycle:0 11:16:21 01 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:16:21 01 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:16:29 01 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:16:31 01 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:16:31 01 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 11:16:31 01 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:16:31 01 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:16:31 01 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 11:16:34 01 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 11:16:34 01 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 11:16:34 01 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 11:16:34 01 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.491 11:16:34 01 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:16:34 01 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:16:34 01 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:16:35 01 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:16:35 01 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:16:35 01 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:16:35 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:16:35 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:16:35 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:16:35 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:16:35 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:16:35 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:16:35 01 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:16:35 01 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:16:35 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:16:35 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:16:35 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:16:35 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:16:35 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:16:35 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:16:35 01 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:16:35 01 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 11:16:35 01 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 11:16:35 01 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 11:16:35 01 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 11:16:35 01 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:16:35 01 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:16:35 01 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:16:35 01 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 11:16:35 01 Apr 2017 UTC 11:18:59 01 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 30719 11:18:59 01 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 11:22:15 01 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 30996 11:22:15 01 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:22:15 01 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 11:22:15 01 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 11:22:15 01 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:22:15 01 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170401012214 ] 11:22:15 01 Apr 2017 UTC: INFO: Base.py(1333): PID:31004 11:22:15 01 Apr 2017 UTC: INFO: Base.py(1375): Started processing 11:22:15 01 Apr 2017 UTC 11:22:15 01 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 11:22:16 01 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 11:22:16 01 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:22:16 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:22:16 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:491 calls_made:2 call_cycle:0 11:22:16 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:22:16 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:491 calls_made:2 call_cycle:0 11:22:16 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:22:16 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:491 calls_made:2 call_cycle:0 11:22:16 01 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:491 calls_made:2 call_cycle:0 2248.5090 -15801.2460 04/01/17 11:13:31 UTC) to sdrifter@soest.hawaii.edu 11:22:16 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:491 calls_made:2 call_cycle:0 11:22:16 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:22:16 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:491 calls_made:2 call_cycle:0 11:22:16 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:22:16 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:491 calls_made:2 call_cycle:0 11:22:16 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:22:16 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:491 calls_made:2 call_cycle:0 11:22:16 01 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:22:16 01 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:22:24 01 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:22:26 01 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:22:26 01 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 11:22:26 01 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:22:26 01 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:22:26 01 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 11:22:30 01 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0491lz 11:22:30 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0491lz.x00 11:22:30 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0491lz.x01 11:22:30 01 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0491lz.r in process_file_group 11:22:30 01 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260491.log 11:22:30 01 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 11:22:30 01 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0491dz 11:22:30 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0491dz.x00 11:22:30 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0491dz.x01 11:22:30 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0491dz.x02 11:22:30 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0491dz.x03 11:22:30 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0491dz.x04 11:22:30 01 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0491dz.r in process_file_group 11:22:30 01 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [491] 11:22:30 01 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [491] 11:22:30 01 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260491) for profiles 11:22:30 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 11:22:30 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/744) 744 to QC_BAD because CT out of water 11:22:30 01 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.042m) 11:22:30 01 Apr 2017 UTC: INFO: QC.py(365): Changed (6/744) 267:269 271 299 319 to QC_PROBABLY_BAD because raw temperature spikes 11:22:30 01 Apr 2017 UTC: INFO: QC.py(408): Changed (7/744) 267:269 271 318 319 323 to QC_PROBABLY_BAD because raw conductivity spikes 11:22:30 01 Apr 2017 UTC: INFO: QC.py(180): Changed (6/744) 267:269 271 299 319 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 11:22:30 01 Apr 2017 UTC: INFO: QC.py(180): Changed (2/744) 318 323 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 11:22:30 01 Apr 2017 UTC: INFO: QC.py(180): Changed (1/744) 744 to QC_BAD because changed raw cond implies changed raw salinity 11:22:30 01 Apr 2017 UTC: INFO: QC.py(365): Changed (6/744) 267:269 271 299 319 to QC_INTERPOLATED because temperature spikes 11:22:30 01 Apr 2017 UTC: INFO: QC.py(408): Changed (7/744) 267:269 271 318 319 323 to QC_INTERPOLATED because conductivity spikes 11:22:30 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/744) 297:301 to QC_BAD because slow apogee CT flow 11:22:30 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/744) 1:6 to QC_BAD because prior to dive start 11:22:30 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/744) 1:6 297:301 744 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 11:22:30 01 Apr 2017 UTC: INFO: QC.py(180): Changed (12/744) 1:6 297:301 744 to QC_BAD because changed corrected salin implies changed speed 11:22:31 01 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 11:22:31 01 Apr 2017 UTC: INFO: QC.py(180): Changed (5/744) 267:269 271 319 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 11:22:31 01 Apr 2017 UTC: INFO: QC.py(180): Changed (2/744) 318 323 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 11:22:31 01 Apr 2017 UTC: INFO: QC.py(180): Changed (5/744) 267:269 271 319 to QC_INTERPOLATED because changed corrected temp implies changed speed 11:22:31 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.44 cm/s 11:22:31 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.97 cm/s 11:22:31 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 11:22:31 01 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (216/744) 159 160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 11:22:31 01 Apr 2017 UTC: INFO: QC.py(180): Changed (1/744) 271 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 11:22:31 01 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (216/744) 159 160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 11:22:31 01 Apr 2017 UTC: INFO: QC.py(180): Changed (1/744) 271 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 11:22:31 01 Apr 2017 UTC: INFO: QC.py(180): Changed (12/744) 1:6 297:301 744 to QC_BAD because changed salinity implies changed optode oxygen 11:22:31 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 11:22:31 01 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 11:22:31 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 11:22:32 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 491: Data set size for profile, binned and kkyy files reduced by 12 points, a 1.61% reduction 11:22:32 01 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.491 11:22:32 01 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:22:32 01 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:22:32 01 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:22:32 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 11:22:32 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 11:26:43 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 11:26:44 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 11:26:44 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 11:27:39 01 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:27:39 01 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:27:39 01 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:27:39 01 Apr 2017 UTC /home/sg626/p6260491.log /home/sg626/p6260491.eng /home/sg626/p6260491.asc /home/sg626/p6260491.pro /home/sg626/p6260491.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 11:27:39 01 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:27:39 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:27:39 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:27:39 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:27:39 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:27:39 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:27:39 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:27:39 01 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:27:39 01 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:27:39 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:27:39 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:27:39 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:27:39 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:27:39 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:27:39 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:27:39 01 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:27:39 01 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 11:27:39 01 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 11:27:39 01 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 11:27:39 01 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 11:27:39 01 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:27:39 01 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:27:39 01 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:27:39 01 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 11:27:39 01 Apr 2017 UTC 15:33:44 01 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 5203 15:33:44 01 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 15:37:16 01 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 5344 15:37:16 01 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 15:37:16 01 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 15:37:16 01 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 15:37:16 01 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 15:37:16 01 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170401053715 ] 15:37:16 01 Apr 2017 UTC: INFO: Base.py(1333): PID:5351 15:37:16 01 Apr 2017 UTC: INFO: Base.py(1375): Started processing 15:37:16 01 Apr 2017 UTC 15:37:16 01 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 15:37:17 01 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 15:37:17 01 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 15:37:17 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:37:17 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:492 calls_made:1 call_cycle:0 15:37:17 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:37:17 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:492 calls_made:1 call_cycle:0 15:37:17 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:37:17 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:492 calls_made:1 call_cycle:0 15:37:17 01 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:492 calls_made:1 call_cycle:0 2248.9240 -15801.3930 04/01/17 15:31:18 UTC) to sdrifter@soest.hawaii.edu 15:37:17 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:492 calls_made:1 call_cycle:0 15:37:17 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:37:17 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:492 calls_made:1 call_cycle:0 15:37:17 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:37:17 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:492 calls_made:1 call_cycle:0 15:37:17 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:37:17 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:492 calls_made:1 call_cycle:0 15:37:17 01 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:37:17 01 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 15:37:25 01 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 15:37:27 01 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 15:37:27 01 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 15:37:27 01 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 15:37:27 01 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 15:37:27 01 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 15:37:31 01 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0492lz 15:37:31 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0492lz.x00 15:37:31 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0492lz.x01 15:37:31 01 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0492lz.r in process_file_group 15:37:31 01 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260492.log 15:37:31 01 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 15:37:31 01 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0492dz 15:37:31 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0492dz.x00 15:37:31 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0492dz.x01 15:37:31 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0492dz.x02 15:37:31 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0492dz.x03 15:37:31 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0492dz.x04 15:37:31 01 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0492dz.r in process_file_group 15:37:31 01 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [492] 15:37:31 01 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [492] 15:37:31 01 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260492) for profiles 15:37:31 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 15:37:31 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/774) 771 773 to QC_BAD because CT out of water 15:37:31 01 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.037m) 15:37:31 01 Apr 2017 UTC: INFO: QC.py(365): Changed (17/774) 2 3 264 265 278:280 284 333:335 340 352 353 771:773 to QC_PROBABLY_BAD because raw temperature spikes 15:37:32 01 Apr 2017 UTC: INFO: QC.py(408): Changed (12/774) 264 265 278:280 284 333:335 340 352 353 to QC_PROBABLY_BAD because raw conductivity spikes 15:37:32 01 Apr 2017 UTC: INFO: QC.py(180): Changed (17/774) 2 3 264 265 278:280 284 333:335 340 352 353 771:773 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 15:37:32 01 Apr 2017 UTC: INFO: QC.py(180): Changed (2/774) 771 773 to QC_BAD because changed raw cond implies changed raw salinity 15:37:32 01 Apr 2017 UTC: INFO: QC.py(365): Changed (17/774) 2 3 264 265 278:280 284 333:335 340 352 353 771:773 to QC_INTERPOLATED because temperature spikes 15:37:32 01 Apr 2017 UTC: INFO: QC.py(408): Changed (12/774) 264 265 278:280 284 333:335 340 352 353 to QC_INTERPOLATED because conductivity spikes 15:37:32 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/774) 311:315 to QC_BAD because slow apogee CT flow 15:37:32 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/774) 1:6 to QC_BAD because prior to dive start 15:37:32 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/774) 772 774 to QC_BAD because end of climb 15:37:32 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/774) 1:6 311:315 771:774 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 15:37:32 01 Apr 2017 UTC: INFO: QC.py(180): Changed (15/774) 1:6 311:315 771:774 to QC_BAD because changed corrected salin implies changed speed 15:37:32 01 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 15:37:32 01 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 492 interp_salinity data_points in_between 458 468 % suspect thermal-inertia points 463 15:37:32 01 Apr 2017 UTC: INFO: QC.py(180): Changed (12/774) 264 265 278:280 284 333:335 340 352 353 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 15:37:32 01 Apr 2017 UTC: INFO: QC.py(180): Changed (12/774) 264 265 278:280 284 333:335 340 352 353 to QC_INTERPOLATED because changed corrected temp implies changed speed 15:37:32 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.70 cm/s 15:37:32 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.31 cm/s 15:37:32 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 15:37:32 01 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (217/774) 182:185 187:190 192:195 197:200 202:205 207:210 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 15:37:32 01 Apr 2017 UTC: INFO: QC.py(180): Changed (5/774) 2 3 771:773 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 15:37:32 01 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (217/774) 182:185 187:190 192:195 197:200 202:205 207:210 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 15:37:32 01 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/774) 733 to QC_BAD because bad aa4330 oyxgen 15:37:32 01 Apr 2017 UTC: INFO: QC.py(180): Changed (5/774) 2 3 771:773 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 15:37:32 01 Apr 2017 UTC: INFO: QC.py(180): Changed (15/774) 1:6 311:315 771:774 to QC_BAD because changed salinity implies changed optode oxygen 15:37:32 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 15:37:32 01 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 15:37:32 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 15:37:33 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 492: Data set size for profile, binned and kkyy files reduced by 15 points, a 1.94% reduction 15:37:33 01 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.492 15:37:33 01 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 15:37:33 01 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 15:37:33 01 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 15:37:33 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 15:37:33 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 15:41:45 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 15:41:47 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 15:41:47 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 15:42:41 01 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 15:42:41 01 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 15:42:41 01 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 15:42:41 01 Apr 2017 UTC /home/sg626/p6260492.log /home/sg626/p6260492.eng /home/sg626/p6260492.asc /home/sg626/p6260492.pro /home/sg626/p6260492.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 15:42:41 01 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 15:42:41 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:42:41 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:42:41 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:42:41 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:42:41 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:42:41 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:42:41 01 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:42:41 01 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 15:42:41 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:42:41 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:42:41 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:42:41 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:42:41 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:42:41 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:42:41 01 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:42:41 01 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 15:42:41 01 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 15:42:41 01 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 15:42:41 01 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 15:42:41 01 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 15:42:41 01 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 15:42:41 01 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 15:42:41 01 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 15:42:41 01 Apr 2017 UTC 19:33:56 01 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 11441 19:33:56 01 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:37:17 01 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 11582 19:37:17 01 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:37:17 01 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:37:17 01 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:37:17 01 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:37:17 01 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170401093716 ] 19:37:17 01 Apr 2017 UTC: INFO: Base.py(1333): PID:11589 19:37:17 01 Apr 2017 UTC: INFO: Base.py(1375): Started processing 19:37:17 01 Apr 2017 UTC 19:37:17 01 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:37:19 01 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:37:19 01 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:37:19 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:37:19 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:493 calls_made:1 call_cycle:0 19:37:19 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:37:19 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:493 calls_made:1 call_cycle:0 19:37:19 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:37:19 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:493 calls_made:1 call_cycle:0 19:37:19 01 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:493 calls_made:1 call_cycle:0 2249.8790 -15800.9230 04/01/17 19:31:30 UTC) to sdrifter@soest.hawaii.edu 19:37:19 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:493 calls_made:1 call_cycle:0 19:37:19 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:37:19 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:493 calls_made:1 call_cycle:0 19:37:19 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:37:19 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:493 calls_made:1 call_cycle:0 19:37:19 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:37:19 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:493 calls_made:1 call_cycle:0 19:37:19 01 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:37:19 01 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:37:27 01 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:37:28 01 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:37:28 01 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:37:28 01 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:37:28 01 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:37:28 01 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:37:32 01 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0493lz 19:37:32 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0493lz.x00 19:37:32 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0493lz.x01 19:37:32 01 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0493lz.r in process_file_group 19:37:32 01 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260493.log 19:37:32 01 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:37:32 01 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0493dz 19:37:32 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0493dz.x00 19:37:32 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0493dz.x01 19:37:32 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0493dz.x02 19:37:32 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0493dz.x03 19:37:32 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0493dz.x04 19:37:32 01 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0493dz.r in process_file_group 19:37:32 01 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [493] 19:37:32 01 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [493] 19:37:33 01 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260493) for profiles 19:37:33 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 19:37:33 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/693) 693 to QC_BAD because CT out of water 19:37:33 01 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.051m) 19:37:33 01 Apr 2017 UTC: INFO: QC.py(365): Changed (12/693) 2 4 5 238 258 259 270 293 296 298 311 342 to QC_PROBABLY_BAD because raw temperature spikes 19:37:33 01 Apr 2017 UTC: INFO: QC.py(377): Changed (1/693) 693 to QC_BAD because raw salinity below bound 19:37:33 01 Apr 2017 UTC: INFO: QC.py(408): Changed (7/693) 238 258 293 298 310 311 342 to QC_PROBABLY_BAD because raw conductivity spikes 19:37:33 01 Apr 2017 UTC: INFO: QC.py(180): Changed (12/693) 2 4 5 238 258 259 270 293 296 298 311 342 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:37:33 01 Apr 2017 UTC: INFO: QC.py(180): Changed (1/693) 310 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 19:37:33 01 Apr 2017 UTC: INFO: QC.py(365): Changed (12/693) 2 4 5 238 258 259 270 293 296 298 311 342 to QC_INTERPOLATED because temperature spikes 19:37:33 01 Apr 2017 UTC: INFO: QC.py(377): Changed (1/693) 693 to QC_BAD because salinity below bound 19:37:33 01 Apr 2017 UTC: INFO: QC.py(408): Changed (7/693) 238 258 293 298 310 311 342 to QC_INTERPOLATED because conductivity spikes 19:37:33 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/693) 294:298 to QC_BAD because slow apogee CT flow 19:37:33 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/693) 1:6 to QC_BAD because prior to dive start 19:37:33 01 Apr 2017 UTC: INFO: QC.py(488): Changed (1/693) 293 to QC_PROBABLY_BAD because bad interpolation anchors 19:37:33 01 Apr 2017 UTC: INFO: QC.py(489): SUGGESTION: 493 bad_conductivity data_points in_between 291 293 % bad interpolation anchors 19:37:33 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/693) 1:6 294:298 693 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:37:33 01 Apr 2017 UTC: INFO: QC.py(180): Changed (12/693) 1:6 294:298 693 to QC_BAD because changed corrected salin implies changed speed 19:37:34 01 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:37:34 01 Apr 2017 UTC: INFO: QC.py(180): Changed (7/693) 238 258 259 270 293 311 342 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 19:37:34 01 Apr 2017 UTC: INFO: QC.py(180): Changed (1/693) 293 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 19:37:34 01 Apr 2017 UTC: INFO: QC.py(180): Changed (1/693) 310 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 19:37:34 01 Apr 2017 UTC: INFO: QC.py(180): Changed (7/693) 238 258 259 270 293 311 342 to QC_INTERPOLATED because changed corrected temp implies changed speed 19:37:34 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.48 cm/s 19:37:34 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.45 cm/s 19:37:34 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:37:34 01 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (210/693) 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:37:34 01 Apr 2017 UTC: INFO: QC.py(180): Changed (5/693) 2 4 5 296 311 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 19:37:34 01 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (210/693) 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 19:37:34 01 Apr 2017 UTC: INFO: QC.py(180): Changed (5/693) 2 4 5 296 311 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 19:37:34 01 Apr 2017 UTC: INFO: QC.py(180): Changed (12/693) 1:6 294:298 693 to QC_BAD because changed salinity implies changed optode oxygen 19:37:34 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:37:34 01 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:37:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 19:37:34 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 493: Data set size for profile, binned and kkyy files reduced by 12 points, a 1.73% reduction 19:37:34 01 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.493 19:37:34 01 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:37:34 01 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:37:34 01 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:37:34 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 19:37:34 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 19:41:43 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 19:41:45 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 19:41:45 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 19:42:40 01 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:42:40 01 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:42:40 01 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:42:40 01 Apr 2017 UTC /home/sg626/p6260493.log /home/sg626/p6260493.eng /home/sg626/p6260493.asc /home/sg626/p6260493.pro /home/sg626/p6260493.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 19:42:40 01 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:42:40 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:42:40 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:42:40 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:42:40 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:42:40 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:42:40 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:42:40 01 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:42:40 01 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:42:40 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:42:40 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:42:40 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:42:40 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:42:40 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:42:40 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:42:40 01 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:42:40 01 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:42:40 01 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:42:40 01 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:42:40 01 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:42:40 01 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:42:40 01 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:42:40 01 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:42:40 01 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 19:42:40 01 Apr 2017 UTC 23:42:03 01 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 18124 23:42:03 01 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 23:45:18 01 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 18264 23:45:18 01 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:45:18 01 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:45:18 01 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:45:18 01 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:45:18 01 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170401134517 ] 23:45:18 01 Apr 2017 UTC: INFO: Base.py(1333): PID:18272 23:45:18 01 Apr 2017 UTC: INFO: Base.py(1375): Started processing 23:45:18 01 Apr 2017 UTC 23:45:18 01 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:45:19 01 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:45:19 01 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:45:19 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:45:19 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:494 calls_made:1 call_cycle:0 23:45:19 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:45:19 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:494 calls_made:1 call_cycle:0 23:45:19 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:45:19 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:494 calls_made:1 call_cycle:0 23:45:19 01 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:494 calls_made:1 call_cycle:0 2250.4350 -15801.0220 04/01/17 23:39:40 UTC) to sdrifter@soest.hawaii.edu 23:45:19 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:494 calls_made:1 call_cycle:0 23:45:19 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:45:19 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:494 calls_made:1 call_cycle:0 23:45:19 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:45:19 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:494 calls_made:1 call_cycle:0 23:45:19 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:45:19 01 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:494 calls_made:1 call_cycle:0 23:45:19 01 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:45:19 01 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:45:27 01 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:45:28 01 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:45:28 01 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:45:28 01 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:45:28 01 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:45:28 01 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:45:32 01 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0494lz 23:45:32 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0494lz.x00 23:45:32 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0494lz.x01 23:45:32 01 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0494lz.r in process_file_group 23:45:32 01 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260494.log 23:45:32 01 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:45:32 01 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0494dz 23:45:32 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0494dz.x00 23:45:32 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0494dz.x01 23:45:32 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0494dz.x02 23:45:32 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0494dz.x03 23:45:32 01 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0494dz.x04 23:45:32 01 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0494dz.r in process_file_group 23:45:33 01 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [494] 23:45:33 01 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [494] 23:45:33 01 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260494) for profiles 23:45:33 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 23:45:33 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/742) 742 to QC_BAD because CT out of water 23:45:33 01 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.100m) 23:45:33 01 Apr 2017 UTC: INFO: QC.py(365): Changed (9/742) 242 265 266 290 296 318 322 336 337 to QC_PROBABLY_BAD because raw temperature spikes 23:45:33 01 Apr 2017 UTC: INFO: QC.py(377): Changed (1/742) 742 to QC_BAD because raw salinity below bound 23:45:33 01 Apr 2017 UTC: INFO: QC.py(408): Changed (6/742) 242 265:267 318 336 to QC_PROBABLY_BAD because raw conductivity spikes 23:45:33 01 Apr 2017 UTC: INFO: QC.py(180): Changed (9/742) 242 265 266 290 296 318 322 336 337 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 23:45:33 01 Apr 2017 UTC: INFO: QC.py(180): Changed (1/742) 267 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 23:45:33 01 Apr 2017 UTC: INFO: QC.py(365): Changed (9/742) 242 265 266 290 296 318 322 336 337 to QC_INTERPOLATED because temperature spikes 23:45:33 01 Apr 2017 UTC: INFO: QC.py(377): Changed (1/742) 742 to QC_BAD because salinity below bound 23:45:33 01 Apr 2017 UTC: INFO: QC.py(408): Changed (6/742) 242 265:267 318 336 to QC_INTERPOLATED because conductivity spikes 23:45:33 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/742) 292:296 to QC_BAD because slow apogee CT flow 23:45:33 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/742) 1:6 to QC_BAD because prior to dive start 23:45:33 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/742) 1:6 292:296 742 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 23:45:33 01 Apr 2017 UTC: INFO: QC.py(180): Changed (12/742) 1:6 292:296 742 to QC_BAD because changed corrected salin implies changed speed 23:45:33 01 Apr 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 741 23:45:34 01 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 23:45:34 01 Apr 2017 UTC: INFO: QC.py(180): Changed (8/742) 242 265 266 290 318 322 336 337 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 23:45:34 01 Apr 2017 UTC: INFO: QC.py(180): Changed (1/742) 267 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 23:45:34 01 Apr 2017 UTC: INFO: QC.py(180): Changed (8/742) 242 265 266 290 318 322 336 337 to QC_INTERPOLATED because changed corrected temp implies changed speed 23:45:34 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.49 cm/s 23:45:34 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.04 cm/s 23:45:34 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 23:45:34 01 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (215/742) 164 165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 23:45:34 01 Apr 2017 UTC: INFO: QC.py(180): Changed (3/742) 266 296 336 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 23:45:34 01 Apr 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/742) 741 to QC_BAD because slow flow in SBE43 23:45:34 01 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (215/742) 164 165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 23:45:34 01 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (3/742) 736 738 741 to QC_BAD because bad aa4330 oyxgen 23:45:34 01 Apr 2017 UTC: INFO: QC.py(180): Changed (3/742) 266 296 336 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 23:45:34 01 Apr 2017 UTC: INFO: QC.py(180): Changed (12/742) 1:6 292:296 742 to QC_BAD because changed salinity implies changed optode oxygen 23:45:34 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 23:45:34 01 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 23:45:34 01 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 23:45:34 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 494: Data set size for profile, binned and kkyy files reduced by 12 points, a 1.62% reduction 23:45:34 01 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.494 23:45:34 01 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:45:34 01 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:45:34 01 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:45:35 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 23:45:35 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 23:49:46 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 23:49:48 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 23:49:48 01 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 23:50:43 01 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:50:43 01 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:50:43 01 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:50:43 01 Apr 2017 UTC /home/sg626/p6260494.log /home/sg626/p6260494.eng /home/sg626/p6260494.asc /home/sg626/p6260494.pro /home/sg626/p6260494.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 23:50:43 01 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:50:43 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:50:43 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:50:43 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:50:43 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:50:43 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:50:43 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:50:43 01 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:50:43 01 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:50:43 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:50:43 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:50:43 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:50:43 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:50:43 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:50:43 01 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:50:43 01 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:50:43 01 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:50:43 01 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:50:43 01 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:50:43 01 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:50:43 01 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:50:43 01 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:50:43 01 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:50:43 01 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 23:50:43 01 Apr 2017 UTC 03:47:40 02 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 24693 03:47:40 02 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 03:51:24 02 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 24989 03:51:24 02 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:51:24 02 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:51:24 02 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:51:24 02 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:51:24 02 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170401175123 ] 03:51:24 02 Apr 2017 UTC: INFO: Base.py(1333): PID:24997 03:51:24 02 Apr 2017 UTC: INFO: Base.py(1375): Started processing 03:51:24 02 Apr 2017 UTC 03:51:24 02 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:51:25 02 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:51:25 02 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:51:25 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:51:25 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:495 calls_made:1 call_cycle:0 03:51:25 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:51:25 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:495 calls_made:1 call_cycle:0 03:51:25 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:51:25 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:495 calls_made:1 call_cycle:0 03:51:25 02 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:495 calls_made:1 call_cycle:0 2250.9970 -15801.3000 04/02/17 03:45:18 UTC) to sdrifter@soest.hawaii.edu 03:51:25 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:495 calls_made:1 call_cycle:0 03:51:25 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:51:25 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:495 calls_made:1 call_cycle:0 03:51:25 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:51:25 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:495 calls_made:1 call_cycle:0 03:51:25 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:51:25 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:495 calls_made:1 call_cycle:0 03:51:25 02 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:51:25 02 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:51:33 02 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:51:35 02 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:51:35 02 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:51:35 02 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:51:35 02 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:51:35 02 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:51:38 02 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0495lz 03:51:38 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0495lz.x00 03:51:38 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0495lz.x01 03:51:38 02 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0495lz.r in process_file_group 03:51:38 02 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260495.log 03:51:38 02 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:51:38 02 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0495dz 03:51:38 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0495dz.x00 03:51:38 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0495dz.x01 03:51:38 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0495dz.x02 03:51:38 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0495dz.x03 03:51:38 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0495dz.x04 03:51:38 02 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0495dz.r in process_file_group 03:51:39 02 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [495] 03:51:39 02 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [495] 03:51:39 02 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260495) for profiles 03:51:39 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 03:51:39 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (5/732) 728:732 to QC_BAD because CT out of water 03:51:39 02 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.134m) 03:51:39 02 Apr 2017 UTC: INFO: QC.py(365): Changed (13/732) 3 239 240 267 269 271 272 312:314 316 729 731 to QC_PROBABLY_BAD because raw temperature spikes 03:51:39 02 Apr 2017 UTC: INFO: QC.py(377): Changed (1/732) 731 to QC_BAD because raw salinity below bound 03:51:39 02 Apr 2017 UTC: INFO: QC.py(408): Changed (11/732) 239 240 252 253 267 269 271 312:314 316 to QC_PROBABLY_BAD because raw conductivity spikes 03:51:39 02 Apr 2017 UTC: INFO: QC.py(180): Changed (12/732) 3 239 240 267 269 271 272 312:314 316 729 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 03:51:39 02 Apr 2017 UTC: INFO: QC.py(180): Changed (2/732) 252 253 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 03:51:39 02 Apr 2017 UTC: INFO: QC.py(180): Changed (4/732) 728:730 732 to QC_BAD because changed raw cond implies changed raw salinity 03:51:39 02 Apr 2017 UTC: INFO: QC.py(365): Changed (13/732) 3 239 240 267 269 271 272 312:314 316 729 731 to QC_INTERPOLATED because temperature spikes 03:51:39 02 Apr 2017 UTC: INFO: QC.py(377): Changed (1/732) 731 to QC_BAD because salinity below bound 03:51:39 02 Apr 2017 UTC: INFO: QC.py(408): Changed (11/732) 239 240 252 253 267 269 271 312:314 316 to QC_INTERPOLATED because conductivity spikes 03:51:39 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/732) 294:298 to QC_BAD because slow apogee CT flow 03:51:39 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/732) 1:6 to QC_BAD because prior to dive start 03:51:39 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/732) 1:6 294:298 728:732 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:51:39 02 Apr 2017 UTC: INFO: QC.py(180): Changed (16/732) 1:6 294:298 728:732 to QC_BAD because changed corrected salin implies changed speed 03:51:40 02 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 03:51:40 02 Apr 2017 UTC: INFO: QC.py(180): Changed (10/732) 239 240 267 269 271 272 312:314 316 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 03:51:40 02 Apr 2017 UTC: INFO: QC.py(180): Changed (2/732) 252 253 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 03:51:40 02 Apr 2017 UTC: INFO: QC.py(180): Changed (10/732) 239 240 267 269 271 272 312:314 316 to QC_INTERPOLATED because changed corrected temp implies changed speed 03:51:40 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.65 cm/s 03:51:40 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.13 cm/s 03:51:40 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:51:40 02 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (211/732) 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:51:40 02 Apr 2017 UTC: INFO: QC.py(180): Changed (5/732) 3 271 316 729 731 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:51:40 02 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (211/732) 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 03:51:40 02 Apr 2017 UTC: INFO: QC.py(180): Changed (5/732) 3 271 316 729 731 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 03:51:40 02 Apr 2017 UTC: INFO: QC.py(180): Changed (16/732) 1:6 294:298 728:732 to QC_BAD because changed salinity implies changed optode oxygen 03:51:40 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:51:40 02 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:51:40 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 03:51:40 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 495: Data set size for profile, binned and kkyy files reduced by 16 points, a 2.19% reduction 03:51:40 02 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.495 03:51:40 02 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.495 03:51:40 02 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:51:40 02 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:51:40 02 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:51:41 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 03:51:41 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 03:55:53 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 03:55:54 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 03:55:54 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 03:56:50 02 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:56:50 02 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:56:50 02 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:56:50 02 Apr 2017 UTC /home/sg626/p6260495.log /home/sg626/p6260495.eng /home/sg626/p6260495.asc /home/sg626/p6260495.pro /home/sg626/p6260495.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 03:56:50 02 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:56:50 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:56:50 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:56:50 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:56:50 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:56:50 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:56:50 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:56:50 02 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:56:50 02 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:56:50 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:56:50 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:56:50 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:56:50 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:56:50 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:56:50 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:56:50 02 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:56:50 02 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:56:50 02 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:56:50 02 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:56:50 02 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:56:50 02 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:56:50 02 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:56:50 02 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:56:50 02 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 03:56:50 02 Apr 2017 UTC 07:52:23 02 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 31165 07:52:24 02 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 07:54:39 02 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 31274 07:54:39 02 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:54:39 02 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:54:39 02 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:54:39 02 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:54:39 02 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170401215439 ] 07:54:39 02 Apr 2017 UTC: INFO: Base.py(1333): PID:31281 07:54:39 02 Apr 2017 UTC: INFO: Base.py(1375): Started processing 07:54:39 02 Apr 2017 UTC 07:54:39 02 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:54:41 02 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:54:41 02 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:54:41 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:54:41 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:496 calls_made:1 call_cycle:0 07:54:41 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:54:41 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:496 calls_made:1 call_cycle:0 07:54:41 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:54:41 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:496 calls_made:1 call_cycle:0 07:54:41 02 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:496 calls_made:1 call_cycle:0 2251.9120 -15801.5260 04/02/17 07:50:00 UTC) to sdrifter@soest.hawaii.edu 07:54:41 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:496 calls_made:1 call_cycle:0 07:54:41 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:54:41 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:496 calls_made:1 call_cycle:0 07:54:41 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:54:41 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:496 calls_made:1 call_cycle:0 07:54:41 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:54:41 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:496 calls_made:1 call_cycle:0 07:54:41 02 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:54:41 02 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:54:49 02 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:54:50 02 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:54:50 02 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:54:50 02 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:54:50 02 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:54:50 02 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:54:54 02 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0496lz 07:54:54 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0496lz.x00 07:54:54 02 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0496lz.r in process_file_group 07:54:54 02 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0496lz.r - expected 0x3759677893, generated 0x76cfb1c1 07:54:54 02 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0496lz.r - expected 0x681e19a2, generated 0x331f 07:54:54 02 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0496lz.r - skipping 07:54:54 02 Apr 2017 UTC: ERROR: Base.py(243): Could not process sg0496lz - skipping 07:54:54 02 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:54:54 02 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0496lz 07:54:54 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0496lz.x00 07:54:54 02 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0496lz.r in process_file_group 07:54:54 02 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0496lz.r - expected 0x3759677893, generated 0x76cfb1c1 07:54:54 02 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0496lz.r - expected 0x681e19a2, generated 0x331f 07:54:54 02 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0496lz.r - skipping 07:54:54 02 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0496lz - skipping 07:54:54 02 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 07:54:54 02 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 07:54:54 02 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 07:54:54 02 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.496 07:54:54 02 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.496 07:54:54 02 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:54:54 02 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:54:54 02 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:54:54 02 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:54:54 02 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:54:54 02 Apr 2017 UTC: ERROR: Base.py(1960): Dive [496] failed to process completely. The following files were not processed completely: /home/sg626/sg0496lz.r Glider logout not seen - retransmissions from glider possible Consult baselog_170401215439 for details. 07:54:54 02 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:54:54 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:54:54 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:54:54 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:54:54 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:54:54 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:54:54 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:54:54 02 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:54:54 02 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:54:54 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:54:54 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:54:54 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:54:54 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:54:54 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:54:54 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:54:55 02 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:54:55 02 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:54:55 02 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:54:55 02 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:54:55 02 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:54:55 02 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:54:55 02 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:54:55 02 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:54:55 02 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 07:54:55 02 Apr 2017 UTC 07:57:18 02 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 31520 07:57:18 02 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 08:01:04 02 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 31917 08:01:04 02 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:01:04 02 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:01:04 02 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:01:04 02 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:01:04 02 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170401220103 ] 08:01:04 02 Apr 2017 UTC: INFO: Base.py(1333): PID:31924 08:01:04 02 Apr 2017 UTC: INFO: Base.py(1375): Started processing 08:01:04 02 Apr 2017 UTC 08:01:04 02 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:01:05 02 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:01:05 02 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:01:05 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:01:05 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:496 calls_made:2 call_cycle:0 08:01:05 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:01:05 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:496 calls_made:2 call_cycle:0 08:01:05 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:01:05 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:496 calls_made:2 call_cycle:0 08:01:05 02 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:496 calls_made:2 call_cycle:0 2251.9120 -15801.5260 04/02/17 07:50:00 UTC) to sdrifter@soest.hawaii.edu 08:01:05 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:496 calls_made:2 call_cycle:0 08:01:05 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:01:05 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:496 calls_made:2 call_cycle:0 08:01:05 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:01:05 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:496 calls_made:2 call_cycle:0 08:01:05 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:01:05 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:496 calls_made:2 call_cycle:0 08:01:05 02 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:01:05 02 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:01:13 02 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:01:15 02 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:01:15 02 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:01:15 02 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:01:15 02 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:01:15 02 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:01:19 02 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0496lz 08:01:19 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0496lz.x00 08:01:19 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0496lz.x01 08:01:19 02 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0496lz.r in process_file_group 08:01:19 02 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260496.log 08:01:19 02 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:01:19 02 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0496dz 08:01:19 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0496dz.x00 08:01:19 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0496dz.x01 08:01:19 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0496dz.x02 08:01:19 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0496dz.x03 08:01:19 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0496dz.x04 08:01:19 02 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0496dz.r in process_file_group 08:01:19 02 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [496] 08:01:19 02 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [496] 08:01:19 02 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260496) for profiles 08:01:19 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:01:19 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/727) 726 727 to QC_BAD because CT out of water 08:01:19 02 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.066m) 08:01:19 02 Apr 2017 UTC: INFO: QC.py(365): Changed (7/727) 2 239 276 289:291 726 to QC_PROBABLY_BAD because raw temperature spikes 08:01:19 02 Apr 2017 UTC: INFO: QC.py(408): Changed (3/727) 239 276 289 to QC_PROBABLY_BAD because raw conductivity spikes 08:01:19 02 Apr 2017 UTC: INFO: QC.py(180): Changed (7/727) 2 239 276 289:291 726 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:01:19 02 Apr 2017 UTC: INFO: QC.py(180): Changed (2/727) 726 727 to QC_BAD because changed raw cond implies changed raw salinity 08:01:19 02 Apr 2017 UTC: INFO: QC.py(365): Changed (7/727) 2 239 276 289:291 726 to QC_INTERPOLATED because temperature spikes 08:01:19 02 Apr 2017 UTC: INFO: QC.py(408): Changed (3/727) 239 276 289 to QC_INTERPOLATED because conductivity spikes 08:01:19 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/727) 288:292 to QC_BAD because slow apogee CT flow 08:01:19 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/727) 1:6 to QC_BAD because prior to dive start 08:01:19 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/727) 1:6 288:292 726 727 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:01:19 02 Apr 2017 UTC: INFO: QC.py(180): Changed (13/727) 1:6 288:292 726 727 to QC_BAD because changed corrected salin implies changed speed 08:01:20 02 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:01:20 02 Apr 2017 UTC: INFO: QC.py(180): Changed (2/727) 239 276 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 08:01:20 02 Apr 2017 UTC: INFO: QC.py(180): Changed (2/727) 239 276 to QC_INTERPOLATED because changed corrected temp implies changed speed 08:01:20 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.07 cm/s 08:01:20 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.33 cm/s 08:01:20 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:01:20 02 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (210/727) 159 160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:01:20 02 Apr 2017 UTC: INFO: QC.py(180): Changed (4/727) 2 276 291 726 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:01:20 02 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (210/727) 159 160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:01:20 02 Apr 2017 UTC: INFO: QC.py(180): Changed (4/727) 2 276 291 726 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:01:20 02 Apr 2017 UTC: INFO: QC.py(180): Changed (13/727) 1:6 288:292 726 727 to QC_BAD because changed salinity implies changed optode oxygen 08:01:20 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:01:20 02 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:01:20 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 08:01:21 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 496: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.79% reduction 08:01:21 02 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.496 08:01:21 02 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.496 08:01:21 02 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:01:21 02 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:01:21 02 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:01:21 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 08:01:21 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 08:05:31 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 08:05:33 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 08:05:33 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 08:06:29 02 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:06:29 02 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:06:29 02 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:06:29 02 Apr 2017 UTC /home/sg626/p6260496.log /home/sg626/p6260496.eng /home/sg626/p6260496.asc /home/sg626/p6260496.pro /home/sg626/p6260496.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 08:06:29 02 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:06:29 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:06:29 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:06:29 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:06:29 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:06:29 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:06:29 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:06:29 02 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:06:29 02 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:06:29 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:06:29 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:06:29 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:06:29 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:06:29 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:06:29 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:06:29 02 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:06:29 02 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:06:29 02 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:06:29 02 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:06:29 02 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:06:29 02 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:06:29 02 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:06:29 02 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:06:29 02 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 08:06:29 02 Apr 2017 UTC 11:59:19 02 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 7410 11:59:19 02 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:02:34 02 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 7832 12:02:34 02 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:02:34 02 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:02:34 02 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:02:34 02 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:02:34 02 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170402020234 ] 12:02:34 02 Apr 2017 UTC: INFO: Base.py(1333): PID:7839 12:02:34 02 Apr 2017 UTC: INFO: Base.py(1375): Started processing 12:02:34 02 Apr 2017 UTC 12:02:34 02 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:02:36 02 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:02:36 02 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:02:36 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:02:36 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:497 calls_made:1 call_cycle:0 12:02:36 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:02:36 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:497 calls_made:1 call_cycle:0 12:02:36 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:02:36 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:497 calls_made:1 call_cycle:0 12:02:36 02 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:497 calls_made:1 call_cycle:0 2252.4830 -15801.5540 04/02/17 11:56:54 UTC) to sdrifter@soest.hawaii.edu 12:02:36 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:497 calls_made:1 call_cycle:0 12:02:36 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:02:36 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:497 calls_made:1 call_cycle:0 12:02:36 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:02:36 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:497 calls_made:1 call_cycle:0 12:02:36 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:02:36 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:497 calls_made:1 call_cycle:0 12:02:36 02 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:02:36 02 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:02:44 02 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:02:45 02 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:02:45 02 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:02:45 02 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:02:45 02 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:02:45 02 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:02:49 02 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0497lz 12:02:49 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0497lz.x00 12:02:49 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0497lz.x01 12:02:49 02 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0497lz.r in process_file_group 12:02:49 02 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260497.log 12:02:49 02 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:02:49 02 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0497dz 12:02:49 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0497dz.x00 12:02:49 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0497dz.x01 12:02:49 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0497dz.x02 12:02:49 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0497dz.x03 12:02:49 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0497dz.x04 12:02:49 02 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0497dz.r in process_file_group 12:02:50 02 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [497] 12:02:50 02 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [497] 12:02:50 02 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260497) for profiles 12:02:50 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 12:02:50 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/712) 711 to QC_BAD because CT out of water 12:02:50 02 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.081m) 12:02:50 02 Apr 2017 UTC: INFO: QC.py(365): Changed (8/712) 4 255 256 269 271 297 298 316 to QC_PROBABLY_BAD because raw temperature spikes 12:02:50 02 Apr 2017 UTC: INFO: QC.py(377): Changed (1/712) 712 to QC_BAD because raw salinity below bound 12:02:50 02 Apr 2017 UTC: INFO: QC.py(388): Changed (1/712) 712 to QC_BAD because bad raw salinity indicates raw conductivity issues 12:02:50 02 Apr 2017 UTC: INFO: QC.py(408): Changed (5/712) 255 261 271 297 316 to QC_PROBABLY_BAD because raw conductivity spikes 12:02:50 02 Apr 2017 UTC: INFO: QC.py(180): Changed (8/712) 4 255 256 269 271 297 298 316 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 12:02:50 02 Apr 2017 UTC: INFO: QC.py(180): Changed (1/712) 261 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 12:02:50 02 Apr 2017 UTC: INFO: QC.py(180): Changed (1/712) 711 to QC_BAD because changed raw cond implies changed raw salinity 12:02:50 02 Apr 2017 UTC: INFO: QC.py(365): Changed (8/712) 4 255 256 269 271 297 298 316 to QC_INTERPOLATED because temperature spikes 12:02:50 02 Apr 2017 UTC: INFO: QC.py(377): Changed (1/712) 712 to QC_BAD because salinity below bound 12:02:50 02 Apr 2017 UTC: INFO: QC.py(388): Changed (1/712) 712 to QC_BAD because bad salinity indicates conductivity issues 12:02:50 02 Apr 2017 UTC: INFO: QC.py(408): Changed (5/712) 255 261 271 297 316 to QC_INTERPOLATED because conductivity spikes 12:02:50 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/712) 296:300 to QC_BAD because slow apogee CT flow 12:02:50 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/712) 1:6 to QC_BAD because prior to dive start 12:02:50 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/712) 1:6 296:300 711 712 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:02:50 02 Apr 2017 UTC: INFO: QC.py(180): Changed (13/712) 1:6 296:300 711 712 to QC_BAD because changed corrected salin implies changed speed 12:02:51 02 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:02:51 02 Apr 2017 UTC: INFO: QC.py(180): Changed (5/712) 255 256 269 271 316 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 12:02:51 02 Apr 2017 UTC: INFO: QC.py(180): Changed (1/712) 261 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 12:02:51 02 Apr 2017 UTC: INFO: QC.py(180): Changed (5/712) 255 256 269 271 316 to QC_INTERPOLATED because changed corrected temp implies changed speed 12:02:51 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.27 cm/s 12:02:51 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.82 cm/s 12:02:51 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:02:51 02 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (212/712) 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:02:51 02 Apr 2017 UTC: INFO: QC.py(180): Changed (4/712) 4 256 271 316 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 12:02:51 02 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (212/712) 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 12:02:51 02 Apr 2017 UTC: INFO: QC.py(180): Changed (4/712) 4 256 271 316 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 12:02:51 02 Apr 2017 UTC: INFO: QC.py(180): Changed (13/712) 1:6 296:300 711 712 to QC_BAD because changed salinity implies changed optode oxygen 12:02:51 02 Apr 2017 UTC: INFO: QC.py(180): Changed (1/712) 261 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 12:02:51 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:02:51 02 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:02:51 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 12:02:51 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 497: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.83% reduction 12:02:51 02 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.497 12:02:51 02 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:02:51 02 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:02:51 02 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:02:52 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 12:02:52 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 12:07:04 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 12:07:06 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 12:07:06 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 12:08:01 02 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:08:01 02 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:08:01 02 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 12:08:01 02 Apr 2017 UTC /home/sg626/p6260497.log /home/sg626/p6260497.eng /home/sg626/p6260497.asc /home/sg626/p6260497.pro /home/sg626/p6260497.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 12:08:01 02 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:08:01 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:08:01 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:08:01 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:08:01 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:08:01 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:08:01 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:08:01 02 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:08:01 02 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:08:01 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:08:01 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:08:01 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:08:01 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:08:01 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:08:01 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:08:01 02 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:08:01 02 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 12:08:01 02 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 12:08:01 02 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 12:08:01 02 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 12:08:01 02 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:08:01 02 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:08:01 02 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:08:01 02 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 12:08:01 02 Apr 2017 UTC 16:00:47 02 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 14492 16:00:47 02 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:04:08 02 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 14792 16:04:08 02 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:04:08 02 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:04:08 02 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:04:08 02 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:04:08 02 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170402060407 ] 16:04:08 02 Apr 2017 UTC: INFO: Base.py(1333): PID:14799 16:04:08 02 Apr 2017 UTC: INFO: Base.py(1375): Started processing 16:04:08 02 Apr 2017 UTC 16:04:08 02 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:04:09 02 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:04:09 02 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:04:09 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:04:09 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:498 calls_made:1 call_cycle:0 16:04:09 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:04:09 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:498 calls_made:1 call_cycle:0 16:04:09 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:04:09 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:498 calls_made:1 call_cycle:0 16:04:09 02 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:498 calls_made:1 call_cycle:0 2252.4000 -15802.1830 04/02/17 15:58:25 UTC) to sdrifter@soest.hawaii.edu 16:04:09 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:498 calls_made:1 call_cycle:0 16:04:09 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:04:09 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:498 calls_made:1 call_cycle:0 16:04:09 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:04:09 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:498 calls_made:1 call_cycle:0 16:04:09 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:04:09 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:498 calls_made:1 call_cycle:0 16:04:09 02 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:04:09 02 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:04:17 02 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:04:19 02 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:04:19 02 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:04:19 02 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:04:19 02 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:04:19 02 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:04:23 02 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0498lz 16:04:23 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0498lz.x00 16:04:23 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0498lz.x01 16:04:23 02 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0498lz.r in process_file_group 16:04:23 02 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260498.log 16:04:23 02 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:04:23 02 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0498dz 16:04:23 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0498dz.x00 16:04:23 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0498dz.x01 16:04:23 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0498dz.x02 16:04:23 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0498dz.x03 16:04:23 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0498dz.x04 16:04:23 02 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0498dz.r in process_file_group 16:04:23 02 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [498] 16:04:23 02 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [498] 16:04:23 02 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260498) for profiles 16:04:23 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:04:23 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/722) 719 721 to QC_BAD because CT out of water 16:04:23 02 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.122m) 16:04:23 02 Apr 2017 UTC: INFO: QC.py(365): Changed (8/722) 3 279 293 300 313 316 719 720 to QC_PROBABLY_BAD because raw temperature spikes 16:04:23 02 Apr 2017 UTC: INFO: QC.py(408): Changed (7/722) 267 279 300 316 319 320 720 to QC_PROBABLY_BAD because raw conductivity spikes 16:04:23 02 Apr 2017 UTC: INFO: QC.py(180): Changed (8/722) 3 279 293 300 313 316 719 720 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:04:23 02 Apr 2017 UTC: INFO: QC.py(180): Changed (3/722) 267 319 320 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 16:04:23 02 Apr 2017 UTC: INFO: QC.py(180): Changed (2/722) 719 721 to QC_BAD because changed raw cond implies changed raw salinity 16:04:23 02 Apr 2017 UTC: INFO: QC.py(365): Changed (8/722) 3 279 293 300 313 316 719 720 to QC_INTERPOLATED because temperature spikes 16:04:23 02 Apr 2017 UTC: INFO: QC.py(408): Changed (7/722) 267 279 300 316 319 320 720 to QC_INTERPOLATED because conductivity spikes 16:04:23 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/722) 291:295 to QC_BAD because slow apogee CT flow 16:04:23 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/722) 1:6 to QC_BAD because prior to dive start 16:04:23 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (3/722) 718 720 722 to QC_BAD because end of climb 16:04:23 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/722) 1:6 291:295 718:722 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:04:23 02 Apr 2017 UTC: INFO: QC.py(180): Changed (16/722) 1:6 291:295 718:722 to QC_BAD because changed corrected salin implies changed speed 16:04:24 02 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:04:24 02 Apr 2017 UTC: INFO: QC.py(180): Changed (4/722) 279 300 313 316 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 16:04:24 02 Apr 2017 UTC: INFO: QC.py(180): Changed (3/722) 267 319 320 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 16:04:24 02 Apr 2017 UTC: INFO: QC.py(180): Changed (4/722) 279 300 313 316 to QC_INTERPOLATED because changed corrected temp implies changed speed 16:04:24 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.55 cm/s 16:04:24 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.82 cm/s 16:04:24 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:04:24 02 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (207/722) 160 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:04:24 02 Apr 2017 UTC: INFO: QC.py(180): Changed (4/722) 3 316 719 720 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:04:24 02 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (207/722) 160 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:04:24 02 Apr 2017 UTC: INFO: QC.py(180): Changed (4/722) 3 316 719 720 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:04:24 02 Apr 2017 UTC: INFO: QC.py(180): Changed (16/722) 1:6 291:295 718:722 to QC_BAD because changed salinity implies changed optode oxygen 16:04:24 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:04:24 02 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:04:24 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:04:25 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 498: Data set size for profile, binned and kkyy files reduced by 16 points, a 2.22% reduction 16:04:25 02 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.498 16:04:25 02 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:04:25 02 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:04:25 02 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:04:25 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:04:25 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:08:38 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 16:08:40 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:08:40 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:09:36 02 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:09:36 02 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:09:36 02 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:09:36 02 Apr 2017 UTC /home/sg626/p6260498.log /home/sg626/p6260498.eng /home/sg626/p6260498.asc /home/sg626/p6260498.pro /home/sg626/p6260498.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:09:36 02 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:09:36 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:09:36 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:09:36 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:09:36 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:09:36 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:09:36 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:09:36 02 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:09:36 02 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:09:36 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:09:36 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:09:36 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:09:36 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:09:36 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:09:36 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:09:36 02 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:09:36 02 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:09:36 02 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:09:36 02 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:09:36 02 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:09:36 02 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:09:36 02 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:09:36 02 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:09:36 02 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 16:09:36 02 Apr 2017 UTC 20:05:21 02 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 21184 20:05:21 02 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:07:32 02 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 21293 20:07:32 02 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:07:32 02 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:07:32 02 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:07:32 02 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:07:32 02 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170402100731 ] 20:07:32 02 Apr 2017 UTC: INFO: Base.py(1333): PID:21300 20:07:32 02 Apr 2017 UTC: INFO: Base.py(1375): Started processing 20:07:32 02 Apr 2017 UTC 20:07:32 02 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:07:33 02 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:07:33 02 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:07:33 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:07:33 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:499 calls_made:1 call_cycle:0 20:07:33 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:07:33 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:499 calls_made:1 call_cycle:0 20:07:33 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:07:33 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:499 calls_made:1 call_cycle:0 20:07:33 02 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:499 calls_made:1 call_cycle:0 2252.9600 -15802.1090 04/02/17 20:03:00 UTC) to sdrifter@soest.hawaii.edu 20:07:33 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:499 calls_made:1 call_cycle:0 20:07:33 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:07:33 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:499 calls_made:1 call_cycle:0 20:07:33 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:07:33 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:499 calls_made:1 call_cycle:0 20:07:33 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:07:33 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:499 calls_made:1 call_cycle:0 20:07:33 02 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:07:33 02 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:07:41 02 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:07:43 02 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:07:43 02 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:07:43 02 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:07:43 02 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:07:43 02 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:07:47 02 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0499lz 20:07:47 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0499lz.x00 20:07:47 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0499lz.x01 20:07:47 02 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0499lz.r in process_file_group 20:07:47 02 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260499.log 20:07:47 02 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:07:47 02 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0499dz 20:07:47 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0499dz.x00 20:07:47 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0499dz.x01 20:07:47 02 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0499dz.r in process_file_group 20:07:47 02 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0499dz.r - expected 0x3641656373, generated 0x230b252a 20:07:47 02 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0499dz.r - expected 0x7e4172f1, generated 0x4358 20:07:47 02 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0499dz.r - skipping 20:07:47 02 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0499dz - skipping 20:07:47 02 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 20:07:47 02 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [499] 20:07:47 02 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 20:07:47 02 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.499 20:07:47 02 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:07:47 02 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:07:47 02 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:07:47 02 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:07:47 02 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:07:47 02 Apr 2017 UTC: ERROR: Base.py(1960): Dive [499] failed to process completely. The following files were not processed completely: /home/sg626/sg0499dz.r Glider logout not seen - retransmissions from glider possible Consult baselog_170402100731 for details. 20:07:47 02 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:07:47 02 Apr 2017 UTC /home/sg626/p6260499.log 20:07:47 02 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:07:47 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:07:47 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:07:47 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:07:47 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:07:47 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:07:47 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:07:47 02 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:07:47 02 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:07:47 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:07:47 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:07:47 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:07:47 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:07:47 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:07:47 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:07:47 02 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:07:47 02 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:07:47 02 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:07:47 02 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:07:47 02 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:07:47 02 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:07:47 02 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:07:47 02 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:07:47 02 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 20:07:47 02 Apr 2017 UTC 20:10:02 02 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 21578 20:10:02 02 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:12:18 02 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 21742 20:12:18 02 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:12:18 02 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:12:18 02 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:12:18 02 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:12:18 02 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170402101218 ] 20:12:18 02 Apr 2017 UTC: INFO: Base.py(1333): PID:21749 20:12:18 02 Apr 2017 UTC: INFO: Base.py(1375): Started processing 20:12:18 02 Apr 2017 UTC 20:12:19 02 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:12:20 02 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:12:20 02 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:12:20 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:12:20 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:499 calls_made:2 call_cycle:0 20:12:20 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:12:20 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:499 calls_made:2 call_cycle:0 20:12:20 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:12:20 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:499 calls_made:2 call_cycle:0 20:12:20 02 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:499 calls_made:2 call_cycle:0 2252.9600 -15802.1090 04/02/17 20:03:00 UTC) to sdrifter@soest.hawaii.edu 20:12:20 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:499 calls_made:2 call_cycle:0 20:12:20 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:12:20 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:499 calls_made:2 call_cycle:0 20:12:20 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:12:20 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:499 calls_made:2 call_cycle:0 20:12:20 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:12:20 02 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:499 calls_made:2 call_cycle:0 20:12:20 02 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:12:20 02 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:12:28 02 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:12:29 02 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:12:29 02 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:12:29 02 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:12:29 02 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:12:29 02 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:12:33 02 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:12:33 02 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0499dz 20:12:33 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0499dz.x00 20:12:33 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0499dz.x01 20:12:33 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0499dz.x02 20:12:33 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0499dz.x03 20:12:33 02 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0499dz.x04 20:12:33 02 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0499dz.r in process_file_group 20:12:34 02 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [499] 20:12:34 02 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [499] 20:12:34 02 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260499) for profiles 20:12:34 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 20:12:34 02 Apr 2017 UTC: INFO: QC.py(365): Changed (6/697) 2 3 272 278 293 303 to QC_PROBABLY_BAD because raw temperature spikes 20:12:34 02 Apr 2017 UTC: INFO: QC.py(377): Changed (1/697) 697 to QC_BAD because raw salinity below bound 20:12:34 02 Apr 2017 UTC: INFO: QC.py(388): Changed (1/697) 697 to QC_BAD because bad raw salinity indicates raw conductivity issues 20:12:34 02 Apr 2017 UTC: INFO: QC.py(408): Changed (5/697) 272 278 280 302 303 to QC_PROBABLY_BAD because raw conductivity spikes 20:12:34 02 Apr 2017 UTC: INFO: QC.py(180): Changed (6/697) 2 3 272 278 293 303 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 20:12:34 02 Apr 2017 UTC: INFO: QC.py(180): Changed (2/697) 280 302 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 20:12:34 02 Apr 2017 UTC: INFO: QC.py(365): Changed (6/697) 2 3 272 278 293 303 to QC_INTERPOLATED because temperature spikes 20:12:34 02 Apr 2017 UTC: INFO: QC.py(377): Changed (1/697) 697 to QC_BAD because salinity below bound 20:12:34 02 Apr 2017 UTC: INFO: QC.py(388): Changed (1/697) 697 to QC_BAD because bad salinity indicates conductivity issues 20:12:34 02 Apr 2017 UTC: INFO: QC.py(408): Changed (5/697) 272 278 280 302 303 to QC_INTERPOLATED because conductivity spikes 20:12:34 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/697) 291:295 to QC_BAD because slow apogee CT flow 20:12:34 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/697) 1:6 to QC_BAD because prior to dive start 20:12:34 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/697) 1:6 291:295 697 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 20:12:34 02 Apr 2017 UTC: INFO: QC.py(180): Changed (12/697) 1:6 291:295 697 to QC_BAD because changed corrected salin implies changed speed 20:12:35 02 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 20:12:35 02 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 499 interp_salinity data_points in_between 447 456 % suspect thermal-inertia points 450 20:12:35 02 Apr 2017 UTC: INFO: QC.py(180): Changed (3/697) 272 278 303 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 20:12:35 02 Apr 2017 UTC: INFO: QC.py(180): Changed (2/697) 280 302 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 20:12:35 02 Apr 2017 UTC: INFO: QC.py(180): Changed (3/697) 272 278 303 to QC_INTERPOLATED because changed corrected temp implies changed speed 20:12:35 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.90 cm/s 20:12:35 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.29 cm/s 20:12:35 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 20:12:35 02 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (212/697) 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 20:12:35 02 Apr 2017 UTC: INFO: QC.py(180): Changed (2/697) 2 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 20:12:35 02 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (212/697) 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 20:12:35 02 Apr 2017 UTC: INFO: QC.py(180): Changed (2/697) 2 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 20:12:35 02 Apr 2017 UTC: INFO: QC.py(180): Changed (12/697) 1:6 291:295 697 to QC_BAD because changed salinity implies changed optode oxygen 20:12:35 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 20:12:35 02 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 20:12:35 02 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 20:12:35 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 499: Data set size for profile, binned and kkyy files reduced by 12 points, a 1.72% reduction 20:12:35 02 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.499 20:12:35 02 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:12:35 02 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:12:35 02 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:12:36 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 20:12:36 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 20:16:52 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 20:16:54 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 20:16:54 02 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 20:17:50 02 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:17:50 02 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:17:50 02 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:17:50 02 Apr 2017 UTC /home/sg626/p6260499.eng /home/sg626/p6260499.asc /home/sg626/p6260499.pro /home/sg626/p6260499.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 20:17:50 02 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:17:50 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:17:50 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:17:50 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:17:50 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:17:50 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:17:50 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:17:50 02 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:17:50 02 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:17:50 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:17:50 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:17:50 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:17:50 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:17:50 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:17:50 02 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:17:50 02 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:17:50 02 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:17:50 02 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:17:50 02 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:17:50 02 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:17:50 02 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:17:50 02 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:17:50 02 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:17:50 02 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 20:17:50 02 Apr 2017 UTC 00:20:38 03 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 28180 00:20:38 03 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:25:28 03 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 28349 00:25:28 03 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:25:28 03 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:25:28 03 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:25:28 03 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:25:28 03 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170402142527 ] 00:25:28 03 Apr 2017 UTC: INFO: Base.py(1333): PID:28361 00:25:28 03 Apr 2017 UTC: INFO: Base.py(1375): Started processing 00:25:28 03 Apr 2017 UTC 00:25:28 03 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:25:29 03 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:25:29 03 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:25:29 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:25:29 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:500 calls_made:1 call_cycle:0 00:25:29 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:25:29 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:500 calls_made:1 call_cycle:0 00:25:29 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:25:29 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:500 calls_made:1 call_cycle:0 00:25:29 03 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:500 calls_made:1 call_cycle:0 2253.4060 -15802.1810 04/03/17 00:18:15 UTC) to sdrifter@soest.hawaii.edu 00:25:29 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:500 calls_made:1 call_cycle:0 00:25:29 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:25:29 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:500 calls_made:1 call_cycle:0 00:25:29 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:25:29 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:500 calls_made:1 call_cycle:0 00:25:29 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:25:29 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:500 calls_made:1 call_cycle:0 00:25:29 03 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:25:29 03 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:25:37 03 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:25:39 03 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:25:39 03 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:25:39 03 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:25:39 03 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:25:39 03 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:25:43 03 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0500lz 00:25:43 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0500lz.x00 00:25:43 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0500lz.x01 00:25:43 03 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0500lz.r in process_file_group 00:25:43 03 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260500.log 00:25:43 03 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:25:43 03 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0500dz 00:25:43 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0500dz.x00 00:25:43 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0500dz.x01 00:25:43 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0500dz.x02 00:25:43 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0500dz.x03 00:25:43 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0500dz.x04 00:25:43 03 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0500dz.r in process_file_group 00:25:43 03 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [500] 00:25:43 03 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [500] 00:25:43 03 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260500) for profiles 00:25:43 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 00:25:44 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/758) 757 758 to QC_BAD because CT out of water 00:25:44 03 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.029m) 00:25:44 03 Apr 2017 UTC: INFO: QC.py(365): Changed (9/758) 4 275 286 295 297:299 310 317 to QC_PROBABLY_BAD because raw temperature spikes 00:25:44 03 Apr 2017 UTC: INFO: QC.py(377): Changed (1/758) 758 to QC_BAD because raw salinity below bound 00:25:44 03 Apr 2017 UTC: INFO: QC.py(408): Changed (4/758) 4 275 286 297 to QC_PROBABLY_BAD because raw conductivity spikes 00:25:44 03 Apr 2017 UTC: INFO: QC.py(180): Changed (9/758) 4 275 286 295 297:299 310 317 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:25:44 03 Apr 2017 UTC: INFO: QC.py(180): Changed (1/758) 757 to QC_BAD because changed raw cond implies changed raw salinity 00:25:44 03 Apr 2017 UTC: INFO: QC.py(365): Changed (9/758) 4 275 286 295 297:299 310 317 to QC_INTERPOLATED because temperature spikes 00:25:44 03 Apr 2017 UTC: INFO: QC.py(377): Changed (1/758) 758 to QC_BAD because salinity below bound 00:25:44 03 Apr 2017 UTC: INFO: QC.py(408): Changed (4/758) 4 275 286 297 to QC_INTERPOLATED because conductivity spikes 00:25:44 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/758) 296:300 to QC_BAD because slow apogee CT flow 00:25:44 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/758) 1:6 to QC_BAD because prior to dive start 00:25:44 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/758) 1:6 296:300 757 758 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:25:44 03 Apr 2017 UTC: INFO: QC.py(180): Changed (13/758) 1:6 296:300 757 758 to QC_BAD because changed corrected salin implies changed speed 00:25:44 03 Apr 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 756 00:25:44 03 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:25:44 03 Apr 2017 UTC: INFO: QC.py(180): Changed (5/758) 275 286 295 310 317 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 00:25:44 03 Apr 2017 UTC: INFO: QC.py(180): Changed (5/758) 275 286 295 310 317 to QC_INTERPOLATED because changed corrected temp implies changed speed 00:25:44 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.70 cm/s 00:25:44 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.28 cm/s 00:25:44 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:25:44 03 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (218/758) 167:170 172:175 177:180 182:185 187:190 192:195 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:25:44 03 Apr 2017 UTC: INFO: QC.py(180): Changed (2/758) 4 286 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:25:44 03 Apr 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/758) 756 to QC_BAD because slow flow in SBE43 00:25:44 03 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (218/758) 167:170 172:175 177:180 182:185 187:190 192:195 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 00:25:44 03 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/758) 753 757 to QC_BAD because bad aa4330 oyxgen 00:25:44 03 Apr 2017 UTC: INFO: QC.py(180): Changed (2/758) 4 286 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:25:44 03 Apr 2017 UTC: INFO: QC.py(180): Changed (12/758) 1:6 296:300 758 to QC_BAD because changed salinity implies changed optode oxygen 00:25:44 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:25:44 03 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:25:44 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 00:25:45 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 500: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.72% reduction 00:25:45 03 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.500 00:25:45 03 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:25:45 03 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:25:45 03 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:25:45 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 00:25:45 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 00:29:58 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 00:30:00 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 00:30:00 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 00:30:55 03 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:30:55 03 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:30:55 03 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:30:55 03 Apr 2017 UTC /home/sg626/p6260500.log /home/sg626/p6260500.eng /home/sg626/p6260500.asc /home/sg626/p6260500.pro /home/sg626/p6260500.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 00:30:55 03 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:30:55 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:30:55 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:30:55 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:30:55 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:30:55 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:30:55 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:30:55 03 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:30:55 03 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:30:55 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:30:55 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:30:55 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:30:55 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:30:55 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:30:55 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:30:55 03 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:30:55 03 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:30:55 03 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:30:55 03 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:30:55 03 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:30:55 03 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:30:55 03 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:30:55 03 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:30:55 03 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 00:30:55 03 Apr 2017 UTC 04:34:53 03 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 2681 04:34:53 03 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:38:18 03 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 2817 04:38:18 03 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:38:18 03 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:38:18 03 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:38:18 03 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:38:18 03 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170402183817 ] 04:38:18 03 Apr 2017 UTC: INFO: Base.py(1333): PID:2825 04:38:18 03 Apr 2017 UTC: INFO: Base.py(1375): Started processing 04:38:18 03 Apr 2017 UTC 04:38:18 03 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:38:19 03 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:38:19 03 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:38:19 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:38:19 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:501 calls_made:1 call_cycle:0 04:38:19 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:38:19 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:501 calls_made:1 call_cycle:0 04:38:19 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:38:19 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:501 calls_made:1 call_cycle:0 04:38:19 03 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:501 calls_made:1 call_cycle:0 2253.7920 -15802.4480 04/03/17 04:32:30 UTC) to sdrifter@soest.hawaii.edu 04:38:19 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:501 calls_made:1 call_cycle:0 04:38:19 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:38:19 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:501 calls_made:1 call_cycle:0 04:38:19 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:38:19 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:501 calls_made:1 call_cycle:0 04:38:19 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:38:19 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:501 calls_made:1 call_cycle:0 04:38:19 03 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:38:19 03 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:38:27 03 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:38:29 03 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:38:29 03 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:38:29 03 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:38:29 03 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:38:29 03 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:38:33 03 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0501lz 04:38:33 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0501lz.x00 04:38:33 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0501lz.x01 04:38:33 03 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0501lz.r in process_file_group 04:38:33 03 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260501.log 04:38:33 03 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:38:33 03 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0501dz 04:38:33 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0501dz.x00 04:38:33 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0501dz.x01 04:38:33 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0501dz.x02 04:38:33 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0501dz.x03 04:38:33 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0501dz.x04 04:38:33 03 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0501dz.r in process_file_group 04:38:33 03 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [501] 04:38:33 03 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [501] 04:38:34 03 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260501) for profiles 04:38:34 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 04:38:34 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/749) 749 to QC_BAD because CT out of water 04:38:34 03 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.093m) 04:38:34 03 Apr 2017 UTC: INFO: QC.py(365): Changed (7/749) 2 3 286 287 309 333 473 to QC_PROBABLY_BAD because raw temperature spikes 04:38:34 03 Apr 2017 UTC: INFO: QC.py(377): Changed (1/749) 749 to QC_BAD because raw salinity below bound 04:38:34 03 Apr 2017 UTC: INFO: QC.py(408): Changed (6/749) 2 286 287 309 333 473 to QC_PROBABLY_BAD because raw conductivity spikes 04:38:34 03 Apr 2017 UTC: INFO: QC.py(180): Changed (7/749) 2 3 286 287 309 333 473 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:38:34 03 Apr 2017 UTC: INFO: QC.py(365): Changed (7/749) 2 3 286 287 309 333 473 to QC_INTERPOLATED because temperature spikes 04:38:34 03 Apr 2017 UTC: INFO: QC.py(377): Changed (1/749) 749 to QC_BAD because salinity below bound 04:38:34 03 Apr 2017 UTC: INFO: QC.py(408): Changed (6/749) 2 286 287 309 333 473 to QC_INTERPOLATED because conductivity spikes 04:38:34 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/749) 301:305 to QC_BAD because slow apogee CT flow 04:38:34 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/749) 1:6 to QC_BAD because prior to dive start 04:38:34 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/749) 1:6 301:305 749 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:38:34 03 Apr 2017 UTC: INFO: QC.py(180): Changed (12/749) 1:6 301:305 749 to QC_BAD because changed corrected salin implies changed speed 04:38:34 03 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:38:34 03 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 501 interp_salinity data_points in_between 475 478 % suspect thermal-inertia points 476 477 04:38:35 03 Apr 2017 UTC: INFO: QC.py(180): Changed (5/749) 286 287 309 333 473 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 04:38:35 03 Apr 2017 UTC: INFO: QC.py(180): Changed (5/749) 286 287 309 333 473 to QC_INTERPOLATED because changed corrected temp implies changed speed 04:38:35 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.77 cm/s 04:38:35 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.15 cm/s 04:38:35 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:38:35 03 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (216/749) 170 172:175 177:180 182:185 187:190 192:195 197:200 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:38:35 03 Apr 2017 UTC: INFO: QC.py(180): Changed (4/749) 2 3 286 473 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:38:35 03 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (216/749) 170 172:175 177:180 182:185 187:190 192:195 197:200 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 04:38:35 03 Apr 2017 UTC: INFO: QC.py(180): Changed (4/749) 2 3 286 473 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:38:35 03 Apr 2017 UTC: INFO: QC.py(180): Changed (12/749) 1:6 301:305 749 to QC_BAD because changed salinity implies changed optode oxygen 04:38:35 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:38:35 03 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:38:35 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 04:38:35 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 501: Data set size for profile, binned and kkyy files reduced by 12 points, a 1.60% reduction 04:38:35 03 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.501 04:38:35 03 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:38:35 03 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:38:35 03 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:38:35 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 04:38:35 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 04:42:51 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 04:42:53 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 04:42:53 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 04:43:50 03 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:43:50 03 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:43:50 03 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:43:50 03 Apr 2017 UTC /home/sg626/p6260501.log /home/sg626/p6260501.eng /home/sg626/p6260501.asc /home/sg626/p6260501.pro /home/sg626/p6260501.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 04:43:50 03 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:43:50 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:43:50 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:43:50 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:43:50 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:43:50 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:43:50 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:43:50 03 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:43:50 03 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:43:50 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:43:50 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:43:50 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:43:50 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:43:50 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:43:50 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:43:50 03 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:43:50 03 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:43:50 03 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:43:50 03 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:43:50 03 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:43:50 03 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:43:50 03 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:43:50 03 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:43:50 03 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 04:43:50 03 Apr 2017 UTC 08:32:12 03 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 9320 08:32:12 03 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {T} 08:35:51 03 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 9453 08:35:51 03 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:35:51 03 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:35:51 03 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:35:51 03 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:35:51 03 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170402223551 ] 08:35:51 03 Apr 2017 UTC: INFO: Base.py(1333): PID:9460 08:35:51 03 Apr 2017 UTC: INFO: Base.py(1375): Started processing 08:35:51 03 Apr 2017 UTC 08:35:51 03 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:35:53 03 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:35:53 03 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:35:53 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:35:53 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:502 calls_made:1 call_cycle:0 08:35:53 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:35:53 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:502 calls_made:1 call_cycle:0 08:35:53 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:35:53 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:502 calls_made:1 call_cycle:0 08:35:53 03 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:502 calls_made:1 call_cycle:0 2254.4450 -15802.2770 04/03/17 08:29:45 UTC) to sdrifter@soest.hawaii.edu 08:35:53 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:502 calls_made:1 call_cycle:0 08:35:53 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:35:53 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:502 calls_made:1 call_cycle:0 08:35:53 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:35:53 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:502 calls_made:1 call_cycle:0 08:35:53 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:35:53 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:502 calls_made:1 call_cycle:0 08:35:53 03 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:35:53 03 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:36:01 03 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:36:02 03 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:36:02 03 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:36:02 03 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:36:02 03 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:36:02 03 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:36:06 03 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0502lz 08:36:06 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0502lz.x00 08:36:06 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0502lz.x01 08:36:06 03 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0502lz.r in process_file_group 08:36:06 03 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260502.log 08:36:06 03 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:36:06 03 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0502dz 08:36:06 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0502dz.x00 08:36:06 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0502dz.x01 08:36:06 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0502dz.x02 08:36:06 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0502dz.x03 08:36:06 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0502dz.x04 08:36:06 03 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0502dz.r in process_file_group 08:36:07 03 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [502] 08:36:07 03 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [502] 08:36:07 03 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260502) for profiles 08:36:07 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:36:07 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/722) 722 to QC_BAD because CT out of water 08:36:07 03 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.004m) 08:36:07 03 Apr 2017 UTC: INFO: QC.py(365): Changed (3/722) 2 325 327 to QC_PROBABLY_BAD because raw temperature spikes 08:36:07 03 Apr 2017 UTC: INFO: QC.py(408): Changed (2/722) 263 325 to QC_PROBABLY_BAD because raw conductivity spikes 08:36:07 03 Apr 2017 UTC: INFO: QC.py(180): Changed (3/722) 2 325 327 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:36:07 03 Apr 2017 UTC: INFO: QC.py(180): Changed (1/722) 263 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 08:36:07 03 Apr 2017 UTC: INFO: QC.py(180): Changed (1/722) 722 to QC_BAD because changed raw cond implies changed raw salinity 08:36:07 03 Apr 2017 UTC: INFO: QC.py(365): Changed (3/722) 2 325 327 to QC_INTERPOLATED because temperature spikes 08:36:07 03 Apr 2017 UTC: INFO: QC.py(408): Changed (2/722) 263 325 to QC_INTERPOLATED because conductivity spikes 08:36:07 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/722) 296:300 to QC_BAD because slow apogee CT flow 08:36:07 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/722) 1:6 to QC_BAD because prior to dive start 08:36:07 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/722) 1:6 296:300 722 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:36:07 03 Apr 2017 UTC: INFO: QC.py(180): Changed (12/722) 1:6 296:300 722 to QC_BAD because changed corrected salin implies changed speed 08:36:08 03 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:36:08 03 Apr 2017 UTC: INFO: QC.py(180): Changed (2/722) 325 327 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 08:36:08 03 Apr 2017 UTC: INFO: QC.py(180): Changed (1/722) 263 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 08:36:08 03 Apr 2017 UTC: INFO: QC.py(180): Changed (2/722) 325 327 to QC_INTERPOLATED because changed corrected temp implies changed speed 08:36:08 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.42 cm/s 08:36:08 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.03 cm/s 08:36:08 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:36:08 03 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (204/722) 174 175 177:180 182:185 187:190 192:195 197:200 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:36:08 03 Apr 2017 UTC: INFO: QC.py(180): Changed (1/722) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:36:08 03 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (204/722) 174 175 177:180 182:185 187:190 192:195 197:200 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:36:08 03 Apr 2017 UTC: INFO: QC.py(180): Changed (1/722) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:36:08 03 Apr 2017 UTC: INFO: QC.py(180): Changed (12/722) 1:6 296:300 722 to QC_BAD because changed salinity implies changed optode oxygen 08:36:08 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:36:08 03 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:36:08 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 08:36:08 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 502: Data set size for profile, binned and kkyy files reduced by 12 points, a 1.66% reduction 08:36:08 03 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.502 08:36:08 03 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.502 08:36:08 03 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:36:08 03 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:36:08 03 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:36:09 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 08:36:09 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 08:40:28 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 08:40:29 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 08:40:29 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 08:41:25 03 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:41:25 03 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:41:25 03 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:41:25 03 Apr 2017 UTC /home/sg626/p6260502.log /home/sg626/p6260502.eng /home/sg626/p6260502.asc /home/sg626/p6260502.pro /home/sg626/p6260502.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 08:41:25 03 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:41:25 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:41:25 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:41:25 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:41:25 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:41:25 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:41:25 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:41:25 03 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:41:25 03 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:41:25 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:41:25 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:41:25 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:41:25 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:41:25 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:41:25 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:41:25 03 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:41:25 03 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:41:25 03 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:41:25 03 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:41:25 03 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:41:25 03 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:41:25 03 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:41:25 03 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:41:26 03 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 08:41:26 03 Apr 2017 UTC 12:36:11 03 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 17013 12:36:11 03 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:39:41 03 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 17143 12:39:41 03 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:39:41 03 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:39:41 03 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:39:41 03 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:39:41 03 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170403023940 ] 12:39:41 03 Apr 2017 UTC: INFO: Base.py(1333): PID:17150 12:39:41 03 Apr 2017 UTC: INFO: Base.py(1375): Started processing 12:39:41 03 Apr 2017 UTC 12:39:41 03 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:39:42 03 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:39:42 03 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:39:42 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:39:42 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:503 calls_made:1 call_cycle:0 12:39:42 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:39:42 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:503 calls_made:1 call_cycle:0 12:39:42 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:39:42 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:503 calls_made:1 call_cycle:0 12:39:42 03 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:503 calls_made:1 call_cycle:0 2252.8130 -15800.9680 04/03/17 12:33:48 UTC) to sdrifter@soest.hawaii.edu 12:39:42 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:503 calls_made:1 call_cycle:0 12:39:42 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:39:42 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:503 calls_made:1 call_cycle:0 12:39:42 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:39:42 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:503 calls_made:1 call_cycle:0 12:39:42 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:39:42 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:503 calls_made:1 call_cycle:0 12:39:42 03 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:39:42 03 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:39:50 03 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:39:52 03 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:39:52 03 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:39:52 03 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:39:52 03 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:39:52 03 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:39:56 03 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0503lz 12:39:56 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0503lz.x00 12:39:56 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0503lz.x01 12:39:56 03 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0503lz.r in process_file_group 12:39:56 03 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260503.log 12:39:56 03 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:39:56 03 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0503dz 12:39:56 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0503dz.x00 12:39:56 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0503dz.x01 12:39:56 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0503dz.x02 12:39:56 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0503dz.x03 12:39:56 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0503dz.x04 12:39:56 03 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0503dz.r in process_file_group 12:39:56 03 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [503] 12:39:56 03 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [503] 12:39:57 03 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260503) for profiles 12:39:57 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 12:39:57 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/699) 698 to QC_BAD because CT out of water 12:39:57 03 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.034m) 12:39:57 03 Apr 2017 UTC: INFO: QC.py(365): Changed (5/699) 2:4 297 695 to QC_PROBABLY_BAD because raw temperature spikes 12:39:57 03 Apr 2017 UTC: INFO: QC.py(377): Changed (1/699) 699 to QC_BAD because raw salinity below bound 12:39:57 03 Apr 2017 UTC: INFO: QC.py(388): Changed (1/699) 699 to QC_BAD because bad raw salinity indicates raw conductivity issues 12:39:57 03 Apr 2017 UTC: INFO: QC.py(180): Changed (5/699) 2:4 297 695 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 12:39:57 03 Apr 2017 UTC: INFO: QC.py(180): Changed (1/699) 698 to QC_BAD because changed raw cond implies changed raw salinity 12:39:57 03 Apr 2017 UTC: INFO: QC.py(365): Changed (5/699) 2:4 297 695 to QC_INTERPOLATED because temperature spikes 12:39:57 03 Apr 2017 UTC: INFO: QC.py(377): Changed (1/699) 699 to QC_BAD because salinity below bound 12:39:57 03 Apr 2017 UTC: INFO: QC.py(388): Changed (1/699) 699 to QC_BAD because bad salinity indicates conductivity issues 12:39:57 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/699) 295:299 to QC_BAD because slow apogee CT flow 12:39:57 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/699) 1:6 to QC_BAD because prior to dive start 12:39:57 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/699) 1:6 295:299 698 699 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:39:57 03 Apr 2017 UTC: INFO: QC.py(180): Changed (13/699) 1:6 295:299 698 699 to QC_BAD because changed corrected salin implies changed speed 12:39:58 03 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:39:58 03 Apr 2017 UTC: INFO: QC.py(180): Changed (1/699) 695 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 12:39:58 03 Apr 2017 UTC: INFO: QC.py(180): Changed (1/699) 695 to QC_INTERPOLATED because changed corrected temp implies changed speed 12:39:58 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.34 cm/s 12:39:58 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.94 cm/s 12:39:58 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:39:58 03 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (215/699) 163:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:39:58 03 Apr 2017 UTC: INFO: QC.py(180): Changed (4/699) 2:4 695 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 12:39:58 03 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (215/699) 163:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 12:39:58 03 Apr 2017 UTC: INFO: QC.py(180): Changed (4/699) 2:4 695 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 12:39:58 03 Apr 2017 UTC: INFO: QC.py(180): Changed (13/699) 1:6 295:299 698 699 to QC_BAD because changed salinity implies changed optode oxygen 12:39:58 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:39:58 03 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:39:58 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 12:39:58 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 503: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.86% reduction 12:39:58 03 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.503 12:39:58 03 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:39:58 03 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:39:58 03 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:39:58 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 12:39:58 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 12:44:15 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 12:44:16 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 12:44:16 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 12:45:13 03 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:45:13 03 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:45:13 03 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 12:45:13 03 Apr 2017 UTC /home/sg626/p6260503.log /home/sg626/p6260503.eng /home/sg626/p6260503.asc /home/sg626/p6260503.pro /home/sg626/p6260503.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 12:45:13 03 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:45:13 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:45:13 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:45:13 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:45:13 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:45:13 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:45:13 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:45:13 03 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:45:13 03 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:45:13 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:45:13 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:45:13 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:45:13 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:45:13 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:45:13 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:45:13 03 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:45:13 03 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 12:45:13 03 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 12:45:13 03 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 12:45:13 03 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 12:45:13 03 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:45:13 03 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:45:13 03 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:45:13 03 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 12:45:13 03 Apr 2017 UTC 16:44:22 03 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 23604 16:44:22 03 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:48:52 03 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 23749 16:48:52 03 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:48:52 03 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:48:52 03 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:48:52 03 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:48:52 03 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170403064851 ] 16:48:52 03 Apr 2017 UTC: INFO: Base.py(1333): PID:23757 16:48:52 03 Apr 2017 UTC: INFO: Base.py(1375): Started processing 16:48:52 03 Apr 2017 UTC 16:48:52 03 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:48:54 03 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:48:54 03 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:48:54 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:48:54 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:504 calls_made:1 call_cycle:0 16:48:54 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:48:54 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:504 calls_made:1 call_cycle:0 16:48:54 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:48:54 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:504 calls_made:1 call_cycle:0 16:48:54 03 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:504 calls_made:1 call_cycle:0 2250.6040 -15800.1840 04/03/17 16:41:54 UTC) to sdrifter@soest.hawaii.edu 16:48:54 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:504 calls_made:1 call_cycle:0 16:48:54 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:48:54 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:504 calls_made:1 call_cycle:0 16:48:54 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:48:54 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:504 calls_made:1 call_cycle:0 16:48:54 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:48:54 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:504 calls_made:1 call_cycle:0 16:48:54 03 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:48:54 03 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:49:02 03 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:49:03 03 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:49:03 03 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:49:03 03 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:49:03 03 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:49:03 03 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:49:07 03 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0504lz 16:49:07 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0504lz.x00 16:49:07 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0504lz.x01 16:49:07 03 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0504lz.r in process_file_group 16:49:07 03 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260504.log 16:49:07 03 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:49:07 03 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0504dz 16:49:07 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0504dz.x00 16:49:07 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0504dz.x01 16:49:07 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0504dz.x02 16:49:07 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0504dz.x03 16:49:07 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0504dz.x04 16:49:07 03 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0504dz.r in process_file_group 16:49:08 03 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [504] 16:49:08 03 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [504] 16:49:08 03 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260504) for profiles 16:49:08 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:49:08 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/729) 727:729 to QC_BAD because CT out of water 16:49:08 03 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.072m) 16:49:08 03 Apr 2017 UTC: INFO: QC.py(365): Changed (5/729) 2 300 301 727 728 to QC_PROBABLY_BAD because raw temperature spikes 16:49:08 03 Apr 2017 UTC: INFO: QC.py(377): Changed (1/729) 729 to QC_BAD because raw salinity below bound 16:49:08 03 Apr 2017 UTC: INFO: QC.py(180): Changed (5/729) 2 300 301 727 728 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:49:08 03 Apr 2017 UTC: INFO: QC.py(180): Changed (2/729) 727 728 to QC_BAD because changed raw cond implies changed raw salinity 16:49:08 03 Apr 2017 UTC: INFO: QC.py(365): Changed (5/729) 2 300 301 727 728 to QC_INTERPOLATED because temperature spikes 16:49:08 03 Apr 2017 UTC: INFO: QC.py(377): Changed (1/729) 729 to QC_BAD because salinity below bound 16:49:08 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/729) 286:290 to QC_BAD because slow apogee CT flow 16:49:08 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/729) 1:6 to QC_BAD because prior to dive start 16:49:08 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/729) 726 to QC_BAD because end of climb 16:49:08 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/729) 1:6 286:290 726:729 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:49:08 03 Apr 2017 UTC: INFO: QC.py(180): Changed (15/729) 1:6 286:290 726:729 to QC_BAD because changed corrected salin implies changed speed 16:49:09 03 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:49:09 03 Apr 2017 UTC: INFO: QC.py(180): Changed (2/729) 300 301 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 16:49:09 03 Apr 2017 UTC: INFO: QC.py(180): Changed (2/729) 300 301 to QC_INTERPOLATED because changed corrected temp implies changed speed 16:49:09 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.76 cm/s 16:49:09 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.04 cm/s 16:49:09 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:49:09 03 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (211/729) 160 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:49:09 03 Apr 2017 UTC: INFO: QC.py(180): Changed (4/729) 2 301 727 728 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:49:09 03 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (211/729) 160 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:49:09 03 Apr 2017 UTC: INFO: QC.py(180): Changed (4/729) 2 301 727 728 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:49:09 03 Apr 2017 UTC: INFO: QC.py(180): Changed (15/729) 1:6 286:290 726:729 to QC_BAD because changed salinity implies changed optode oxygen 16:49:09 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:49:09 03 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:49:09 03 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:49:09 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 504: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.06% reduction 16:49:09 03 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.504 16:49:09 03 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:49:09 03 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:49:09 03 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:49:10 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:49:10 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:53:28 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 16:53:29 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:53:29 03 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:54:26 03 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:54:26 03 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:54:26 03 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:54:26 03 Apr 2017 UTC /home/sg626/p6260504.log /home/sg626/p6260504.eng /home/sg626/p6260504.asc /home/sg626/p6260504.pro /home/sg626/p6260504.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:54:26 03 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:54:26 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:54:26 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:54:26 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:54:26 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:54:26 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:54:26 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:54:26 03 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:54:26 03 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:54:26 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:54:26 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:54:26 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:54:26 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:54:26 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:54:26 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:54:26 03 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:54:26 03 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:54:26 03 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:54:26 03 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:54:26 03 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:54:26 03 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:54:26 03 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:54:26 03 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:54:26 03 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 16:54:26 03 Apr 2017 UTC 20:52:33 03 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 1274 20:52:33 03 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:57:48 03 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 1614 20:57:48 03 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:57:48 03 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:57:48 03 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:57:48 03 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:57:48 03 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170403105747 ] 20:57:48 03 Apr 2017 UTC: INFO: Base.py(1333): PID:1621 20:57:48 03 Apr 2017 UTC: INFO: Base.py(1375): Started processing 20:57:48 03 Apr 2017 UTC 20:57:48 03 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:57:49 03 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:57:49 03 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:57:49 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:57:49 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:505 calls_made:1 call_cycle:0 20:57:49 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:57:49 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:505 calls_made:1 call_cycle:0 20:57:49 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:57:49 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:505 calls_made:1 call_cycle:0 20:57:49 03 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:505 calls_made:1 call_cycle:0 2248.8230 -15759.2930 04/03/17 20:50:09 UTC) to sdrifter@soest.hawaii.edu 20:57:49 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:505 calls_made:1 call_cycle:0 20:57:49 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:57:49 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:505 calls_made:1 call_cycle:0 20:57:49 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:57:49 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:505 calls_made:1 call_cycle:0 20:57:49 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:57:49 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:505 calls_made:1 call_cycle:0 20:57:49 03 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:57:49 03 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:57:57 03 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:57:59 03 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:57:59 03 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:57:59 03 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:57:59 03 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:57:59 03 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:58:03 03 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0505lz 20:58:03 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505lz.x00 20:58:03 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505lz.x01 20:58:03 03 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0505lz.r in process_file_group 20:58:03 03 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260505.log 20:58:03 03 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:58:03 03 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0505dz 20:58:03 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x00 20:58:03 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x01 20:58:03 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x02 20:58:03 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x03 20:58:03 03 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0505dz.r in process_file_group 20:58:03 03 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0505dz.r - expected 0x496802083, generated 0x85b9de44 20:58:03 03 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0505dz.r - expected 0x69d41ac1, generated 0xdc62 20:58:03 03 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0505dz.r - skipping 20:58:03 03 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0505dz - skipping 20:58:03 03 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 20:58:03 03 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [505] 20:58:03 03 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 20:58:03 03 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.505 20:58:03 03 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:58:03 03 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:58:03 03 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:58:03 03 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:58:03 03 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:58:03 03 Apr 2017 UTC: ERROR: Base.py(1960): Dive [505] failed to process completely. The following files were not processed completely: /home/sg626/sg0505dz.r Glider logout not seen - retransmissions from glider possible Consult baselog_170403105747 for details. 20:58:03 03 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:58:03 03 Apr 2017 UTC /home/sg626/p6260505.log 20:58:03 03 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:58:03 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:58:03 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:58:03 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:58:03 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:58:03 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:58:03 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:58:03 03 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:58:03 03 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:58:03 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:58:03 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:58:03 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:58:03 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:58:03 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:58:03 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:58:04 03 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:58:04 03 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:58:04 03 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:58:04 03 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:58:04 03 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:58:04 03 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:58:04 03 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:58:04 03 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:58:04 03 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 20:58:04 03 Apr 2017 UTC 21:01:21 03 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 2249 21:01:21 03 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:02:32 03 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 2383 21:02:32 03 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:02:32 03 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:02:32 03 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:02:32 03 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:02:32 03 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170403110232 ] 21:02:32 03 Apr 2017 UTC: INFO: Base.py(1333): PID:2390 21:02:32 03 Apr 2017 UTC: INFO: Base.py(1375): Started processing 21:02:32 03 Apr 2017 UTC 21:02:32 03 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:02:34 03 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:02:34 03 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:02:34 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:02:34 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:505 calls_made:3 call_cycle:0 21:02:34 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:02:34 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:505 calls_made:3 call_cycle:0 21:02:34 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:02:34 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:505 calls_made:3 call_cycle:0 21:02:34 03 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:505 calls_made:3 call_cycle:0 2248.8230 -15759.2930 04/03/17 20:50:09 UTC) to sdrifter@soest.hawaii.edu 21:02:34 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:505 calls_made:3 call_cycle:0 21:02:34 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:02:34 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:505 calls_made:3 call_cycle:0 21:02:34 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:02:34 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:505 calls_made:3 call_cycle:0 21:02:34 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:02:34 03 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:505 calls_made:3 call_cycle:0 21:02:34 03 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:02:34 03 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:02:42 03 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:02:44 03 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:02:44 03 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:02:44 03 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:02:44 03 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:02:44 03 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:02:47 03 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:02:47 03 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0505dz 21:02:48 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x00 21:02:48 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x01 21:02:48 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x02 21:02:48 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x03 21:02:48 03 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) 21:02:48 03 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x04 21:02:48 03 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0505dz.r in process_file_group 21:02:48 03 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0505dz.r - expected 0x4058408267, generated 0x4ef7c29e 21:02:48 03 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0505dz.r - expected 0x106ae, generated 0xf912 21:02:48 03 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0505dz.r - skipping 21:02:48 03 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0505dz - skipping 21:02:48 03 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 21:02:48 03 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 21:02:48 03 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 21:02:48 03 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.505 21:02:48 03 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:02:48 03 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:02:48 03 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:02:48 03 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:02:48 03 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:02:48 03 Apr 2017 UTC: ERROR: Base.py(1960): Dive [505] failed to process completely. The following files were not processed completely: /home/sg626/sg0505dz.r Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) - consider resend_dive /d 505 03 Glider logout seen - transmissions from glider complete Consult baselog_170403110232 for details. 21:02:48 03 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:02:48 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:02:48 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:02:48 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:02:48 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:02:48 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:02:48 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:02:48 03 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:02:48 03 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:02:48 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:02:48 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:02:48 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:02:48 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:02:48 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:02:48 03 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:02:48 03 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:02:48 03 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:02:48 03 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:02:48 03 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:02:48 03 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:02:48 03 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:02:48 03 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:02:48 03 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:02:48 03 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 21:02:48 03 Apr 2017 UTC 01:00:26 04 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 8742 01:00:26 04 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:03:39 04 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 9049 01:03:39 04 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:03:39 04 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:03:39 04 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:03:39 04 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:03:39 04 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170403150338 ] 01:03:39 04 Apr 2017 UTC: INFO: Base.py(1333): PID:9056 01:03:39 04 Apr 2017 UTC: INFO: Base.py(1375): Started processing 01:03:39 04 Apr 2017 UTC 01:03:39 04 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:03:40 04 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:03:40 04 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:03:40 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:03:40 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:506 calls_made:1 call_cycle:0 01:03:40 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:03:40 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:506 calls_made:1 call_cycle:0 01:03:40 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:03:40 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:506 calls_made:1 call_cycle:0 01:03:40 04 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:506 calls_made:1 call_cycle:0 2247.1650 -15758.5010 04/04/17 00:58:00 UTC) to sdrifter@soest.hawaii.edu 01:03:40 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:506 calls_made:1 call_cycle:0 01:03:40 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:03:40 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:506 calls_made:1 call_cycle:0 01:03:40 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:03:40 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:506 calls_made:1 call_cycle:0 01:03:40 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:03:40 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:506 calls_made:1 call_cycle:0 01:03:40 04 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:03:40 04 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:03:48 04 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:03:50 04 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:03:50 04 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:03:50 04 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:03:50 04 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:03:50 04 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:03:54 04 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:03:54 04 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0505dz 01:03:54 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x00 01:03:54 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x01 01:03:54 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x02 01:03:54 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x03 01:03:54 04 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) 01:03:54 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x04 01:03:54 04 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0505dz.r in process_file_group 01:03:54 04 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0505dz.r - expected 0x4058408267, generated 0x4ef7c29e 01:03:54 04 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0505dz.r - expected 0x106ae, generated 0xf912 01:03:54 04 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0505dz.r - skipping 01:03:54 04 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0505dz - skipping 01:03:54 04 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0506lz 01:03:54 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0506lz.x00 01:03:54 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0506lz.x01 01:03:54 04 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0506lz.r in process_file_group 01:03:54 04 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260506.log 01:03:54 04 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:03:54 04 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0506dz 01:03:54 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0506dz.x00 01:03:54 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0506dz.x01 01:03:54 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0506dz.x02 01:03:54 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0506dz.x03 01:03:54 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0506dz.x04 01:03:54 04 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0506dz.r in process_file_group 01:03:54 04 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [506] 01:03:54 04 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [506] 01:03:55 04 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260506) for profiles 01:03:55 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:03:55 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/711) 711 to QC_BAD because CT out of water 01:03:55 04 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.124m) 01:03:55 04 Apr 2017 UTC: INFO: QC.py(365): Changed (3/711) 333 344 466 to QC_PROBABLY_BAD because raw temperature spikes 01:03:55 04 Apr 2017 UTC: INFO: QC.py(408): Changed (5/711) 2 278 332 333 344 to QC_PROBABLY_BAD because raw conductivity spikes 01:03:55 04 Apr 2017 UTC: INFO: QC.py(180): Changed (3/711) 333 344 466 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:03:55 04 Apr 2017 UTC: INFO: QC.py(180): Changed (3/711) 2 278 332 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 01:03:55 04 Apr 2017 UTC: INFO: QC.py(180): Changed (1/711) 711 to QC_BAD because changed raw cond implies changed raw salinity 01:03:55 04 Apr 2017 UTC: INFO: QC.py(365): Changed (3/711) 333 344 466 to QC_INTERPOLATED because temperature spikes 01:03:55 04 Apr 2017 UTC: INFO: QC.py(408): Changed (5/711) 2 278 332 333 344 to QC_INTERPOLATED because conductivity spikes 01:03:55 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/711) 302:306 to QC_BAD because slow apogee CT flow 01:03:55 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/711) 1:6 to QC_BAD because prior to dive start 01:03:55 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/711) 1:6 302:306 711 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:03:55 04 Apr 2017 UTC: INFO: QC.py(180): Changed (12/711) 1:6 302:306 711 to QC_BAD because changed corrected salin implies changed speed 01:03:55 04 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:03:55 04 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 506 interp_salinity data_points in_between 629 632 % suspect thermal-inertia points 631 632 01:03:55 04 Apr 2017 UTC: INFO: QC.py(180): Changed (3/711) 333 344 466 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 01:03:55 04 Apr 2017 UTC: INFO: QC.py(180): Changed (2/711) 278 332 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 01:03:55 04 Apr 2017 UTC: INFO: QC.py(180): Changed (3/711) 333 344 466 to QC_INTERPOLATED because changed corrected temp implies changed speed 01:03:55 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.28 cm/s 01:03:55 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.83 cm/s 01:03:55 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:03:55 04 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (208/711) 167:170 172:175 177:180 182:185 187:190 192:195 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:03:55 04 Apr 2017 UTC: INFO: QC.py(180): Changed (1/711) 466 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 01:03:55 04 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (208/711) 167:170 172:175 177:180 182:185 187:190 192:195 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 01:03:55 04 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (3/711) 705 706 710 to QC_BAD because bad aa4330 oyxgen 01:03:55 04 Apr 2017 UTC: INFO: QC.py(180): Changed (1/711) 466 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 01:03:55 04 Apr 2017 UTC: INFO: QC.py(180): Changed (12/711) 1:6 302:306 711 to QC_BAD because changed salinity implies changed optode oxygen 01:03:55 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:03:55 04 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 01:03:55 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:03:55 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:03:55 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:03:55 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:03:55 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:03:55 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:03:55 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:03:55 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:03:55 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:03:55 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:03:55 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:03:55 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:03:55 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:03:55 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:03:55 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:03:55 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:03:55 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:03:55 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:03:55 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:03:55 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:03:55 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:03:55 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:03:55 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:03:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:03:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:03:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:03:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:03:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:03:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:03:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:03:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:03:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:03:56 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 506: Data set size for profile, binned and kkyy files reduced by 12 points, a 1.69% reduction 01:03:56 04 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.506 01:03:56 04 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:03:56 04 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:03:56 04 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:03:56 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:03:56 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 01:08:14 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 01:08:16 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 01:08:16 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 01:09:12 04 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:09:12 04 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:09:13 04 Apr 2017 UTC: ERROR: Base.py(1960): Dive [505] failed to process completely. The following files were not processed completely: /home/sg626/sg0505dz.r Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) - consider resend_dive /d 505 03 Glider logout seen - transmissions from glider complete Consult baselog_170403150338 for details. 01:09:13 04 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:09:13 04 Apr 2017 UTC /home/sg626/p6260506.log /home/sg626/p6260506.eng /home/sg626/p6260506.asc /home/sg626/p6260506.pro /home/sg626/p6260506.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 01:09:13 04 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:09:13 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:09:13 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:09:13 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:09:13 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:09:13 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:09:13 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:09:13 04 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:09:13 04 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:09:13 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:09:13 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:09:13 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:09:13 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:09:13 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:09:13 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:09:13 04 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:09:13 04 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:09:13 04 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:09:13 04 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:09:13 04 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:09:13 04 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:09:13 04 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:09:13 04 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:09:13 04 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 01:09:13 04 Apr 2017 UTC 05:11:39 04 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 15341 05:11:39 04 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:14:55 04 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 15412 05:14:55 04 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:14:55 04 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:14:55 04 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:14:55 04 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:14:55 04 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170403191454 ] 05:14:55 04 Apr 2017 UTC: INFO: Base.py(1333): PID:15419 05:14:55 04 Apr 2017 UTC: INFO: Base.py(1375): Started processing 05:14:55 04 Apr 2017 UTC 05:14:55 04 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:14:56 04 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:14:56 04 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:14:56 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:14:56 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:507 calls_made:1 call_cycle:0 05:14:56 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:14:56 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:507 calls_made:1 call_cycle:0 05:14:56 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:14:56 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:507 calls_made:1 call_cycle:0 05:14:56 04 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:507 calls_made:1 call_cycle:0 2245.3350 -15757.9620 04/04/17 05:09:18 UTC) to sdrifter@soest.hawaii.edu 05:15:02 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:507 calls_made:1 call_cycle:0 05:15:02 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:15:02 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:507 calls_made:1 call_cycle:0 05:15:02 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:15:02 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:507 calls_made:1 call_cycle:0 05:15:02 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:15:02 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:507 calls_made:1 call_cycle:0 05:15:02 04 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:15:02 04 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:15:10 04 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:15:11 04 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:15:11 04 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:15:11 04 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:15:11 04 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:15:11 04 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:15:15 04 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:15:15 04 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0505dz 05:15:15 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x00 05:15:15 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x01 05:15:15 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x02 05:15:15 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x03 05:15:15 04 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) 05:15:15 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x04 05:15:15 04 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0505dz.r in process_file_group 05:15:15 04 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0505dz.r - expected 0x4058408267, generated 0x4ef7c29e 05:15:15 04 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0505dz.r - expected 0x106ae, generated 0xf912 05:15:15 04 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0505dz.r - skipping 05:15:15 04 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0505dz - skipping 05:15:15 04 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0507lz 05:15:15 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0507lz.x00 05:15:15 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0507lz.x01 05:15:15 04 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0507lz.r in process_file_group 05:15:15 04 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260507.log 05:15:15 04 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:15:15 04 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0507dz 05:15:15 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0507dz.x00 05:15:15 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0507dz.x01 05:15:15 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0507dz.x02 05:15:15 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0507dz.x03 05:15:15 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0507dz.x04 05:15:15 04 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0507dz.r in process_file_group 05:15:16 04 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [507] 05:15:16 04 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [507] 05:15:16 04 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260507) for profiles 05:15:16 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:15:16 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/751) 750 751 to QC_BAD because CT out of water 05:15:16 04 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.085m) 05:15:16 04 Apr 2017 UTC: INFO: QC.py(365): Changed (11/751) 266 275 282 288 289 294 303 309 310 314 750 to QC_PROBABLY_BAD because raw temperature spikes 05:15:16 04 Apr 2017 UTC: INFO: QC.py(408): Changed (8/751) 266 275 282 288 289 303 309 310 to QC_PROBABLY_BAD because raw conductivity spikes 05:15:16 04 Apr 2017 UTC: INFO: QC.py(180): Changed (11/751) 266 275 282 288 289 294 303 309 310 314 750 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:15:16 04 Apr 2017 UTC: INFO: QC.py(180): Changed (2/751) 750 751 to QC_BAD because changed raw cond implies changed raw salinity 05:15:16 04 Apr 2017 UTC: INFO: QC.py(365): Changed (11/751) 266 275 282 288 289 294 303 309 310 314 750 to QC_INTERPOLATED because temperature spikes 05:15:16 04 Apr 2017 UTC: INFO: QC.py(408): Changed (8/751) 266 275 282 288 289 303 309 310 to QC_INTERPOLATED because conductivity spikes 05:15:16 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/751) 292:296 to QC_BAD because slow apogee CT flow 05:15:16 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/751) 1:6 to QC_BAD because prior to dive start 05:15:16 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/751) 749 to QC_BAD because end of climb 05:15:16 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/751) 1:6 292:296 749:751 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:15:16 04 Apr 2017 UTC: INFO: QC.py(180): Changed (14/751) 1:6 292:296 749:751 to QC_BAD because changed corrected salin implies changed speed 05:15:17 04 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:15:17 04 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 507 interp_salinity data_points in_between 460 466 % suspect thermal-inertia points 462 465 05:15:17 04 Apr 2017 UTC: INFO: QC.py(180): Changed (9/751) 266 275 282 288 289 303 309 310 314 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 05:15:17 04 Apr 2017 UTC: INFO: QC.py(180): Changed (9/751) 266 275 282 288 289 303 309 310 314 to QC_INTERPOLATED because changed corrected temp implies changed speed 05:15:17 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.83 cm/s 05:15:17 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.29 cm/s 05:15:17 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:15:17 04 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (220/751) 163:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:15:17 04 Apr 2017 UTC: INFO: QC.py(180): Changed (2/751) 266 750 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:15:17 04 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (220/751) 163:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:15:17 04 Apr 2017 UTC: INFO: QC.py(180): Changed (2/751) 266 750 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:15:17 04 Apr 2017 UTC: INFO: QC.py(180): Changed (14/751) 1:6 292:296 749:751 to QC_BAD because changed salinity implies changed optode oxygen 05:15:17 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:15:17 04 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:15:17 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 05:15:17 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 507: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.86% reduction 05:15:17 04 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.507 05:15:17 04 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:15:17 04 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:15:17 04 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:15:18 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 05:15:18 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 05:19:39 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 05:19:40 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 05:19:40 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 05:20:37 04 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:20:37 04 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:20:38 04 Apr 2017 UTC: ERROR: Base.py(1960): Dive [505] failed to process completely. The following files were not processed completely: /home/sg626/sg0505dz.r Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) - consider resend_dive /d 505 03 Glider logout seen - transmissions from glider complete Consult baselog_170403191454 for details. 05:20:38 04 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:20:38 04 Apr 2017 UTC /home/sg626/p6260507.log /home/sg626/p6260507.eng /home/sg626/p6260507.asc /home/sg626/p6260507.pro /home/sg626/p6260507.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 05:20:38 04 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:20:38 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:20:38 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:20:38 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:20:38 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:20:38 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:20:38 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:20:38 04 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:20:38 04 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:20:38 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:20:38 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:20:38 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:20:38 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:20:38 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:20:38 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:20:38 04 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:20:38 04 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:20:38 04 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:20:38 04 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:20:38 04 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:20:38 04 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:20:38 04 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:20:38 04 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:20:38 04 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 05:20:38 04 Apr 2017 UTC 09:15:28 04 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 21761 09:15:28 04 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:20:22 04 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 22028 09:20:22 04 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:20:22 04 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:20:22 04 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:20:22 04 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:20:22 04 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170403232022 ] 09:20:22 04 Apr 2017 UTC: INFO: Base.py(1333): PID:22035 09:20:22 04 Apr 2017 UTC: INFO: Base.py(1375): Started processing 09:20:22 04 Apr 2017 UTC 09:20:22 04 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:20:24 04 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:20:24 04 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:20:24 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:20:24 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:508 calls_made:1 call_cycle:0 09:20:24 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:20:24 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:508 calls_made:1 call_cycle:0 09:20:24 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:20:24 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:508 calls_made:1 call_cycle:0 09:20:24 04 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:508 calls_made:1 call_cycle:0 2243.3380 -15757.4090 04/04/17 09:13:00 UTC) to sdrifter@soest.hawaii.edu 09:20:24 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:508 calls_made:1 call_cycle:0 09:20:24 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:20:24 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:508 calls_made:1 call_cycle:0 09:20:24 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:20:24 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:508 calls_made:1 call_cycle:0 09:20:24 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:20:24 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:508 calls_made:1 call_cycle:0 09:20:24 04 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:20:24 04 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:20:32 04 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:20:33 04 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:20:33 04 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:20:33 04 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:20:34 04 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:20:34 04 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:20:37 04 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:20:37 04 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0505dz 09:20:37 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x00 09:20:37 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x01 09:20:37 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x02 09:20:37 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x03 09:20:37 04 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) 09:20:37 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x04 09:20:37 04 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0505dz.r in process_file_group 09:20:37 04 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0505dz.r - expected 0x4058408267, generated 0x4ef7c29e 09:20:37 04 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0505dz.r - expected 0x106ae, generated 0xf912 09:20:37 04 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0505dz.r - skipping 09:20:37 04 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0505dz - skipping 09:20:37 04 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0508lz 09:20:37 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0508lz.x00 09:20:37 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0508lz.x01 09:20:37 04 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0508lz.r in process_file_group 09:20:37 04 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260508.log 09:20:37 04 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:20:37 04 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0508dz 09:20:37 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0508dz.x00 09:20:37 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0508dz.x01 09:20:37 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0508dz.x02 09:20:37 04 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0508dz.r in process_file_group 09:20:37 04 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0508dz.r - expected 0x927826697, generated 0xd2757be5 09:20:37 04 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0508dz.r - expected 0x189021dd, generated 0xb10a 09:20:37 04 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0508dz.r - skipping 09:20:37 04 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0508dz - skipping 09:20:37 04 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 09:20:38 04 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [508] 09:20:38 04 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 09:20:38 04 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.508 09:20:38 04 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:20:38 04 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:20:38 04 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:20:38 04 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:20:38 04 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:20:38 04 Apr 2017 UTC: ERROR: Base.py(1960): Dive [505, 508] failed to process completely. The following files were not processed completely: /home/sg626/sg0505dz.r Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) - consider resend_dive /d 505 03 /home/sg626/sg0508dz.r Glider logout not seen - retransmissions from glider possible Consult baselog_170403232022 for details. 09:20:38 04 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:20:38 04 Apr 2017 UTC /home/sg626/p6260508.log 09:20:38 04 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:20:38 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:20:38 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:20:38 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:20:38 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:20:38 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:20:38 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:20:38 04 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:20:38 04 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:20:38 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:20:38 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:20:38 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:20:38 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:20:38 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:20:38 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:20:38 04 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:20:38 04 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:20:38 04 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:20:38 04 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:20:38 04 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:20:38 04 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:20:38 04 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:20:38 04 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:20:38 04 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 09:20:38 04 Apr 2017 UTC 09:22:20 04 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 22289 09:22:20 04 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:23:53 04 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 22400 09:23:53 04 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:23:53 04 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:23:53 04 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:23:53 04 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:23:53 04 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170403232352 ] 09:23:53 04 Apr 2017 UTC: INFO: Base.py(1333): PID:22407 09:23:53 04 Apr 2017 UTC: INFO: Base.py(1375): Started processing 09:23:53 04 Apr 2017 UTC 09:23:53 04 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:23:54 04 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:23:54 04 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:23:54 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:23:54 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:508 calls_made:2 call_cycle:0 09:23:54 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:23:54 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:508 calls_made:2 call_cycle:0 09:23:54 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:23:54 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:508 calls_made:2 call_cycle:0 09:23:54 04 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:508 calls_made:2 call_cycle:0 2243.3380 -15757.4090 04/04/17 09:13:00 UTC) to sdrifter@soest.hawaii.edu 09:23:55 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:508 calls_made:2 call_cycle:0 09:23:55 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:23:55 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:508 calls_made:2 call_cycle:0 09:23:55 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:23:55 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:508 calls_made:2 call_cycle:0 09:23:55 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:23:55 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:508 calls_made:2 call_cycle:0 09:23:55 04 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:23:55 04 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:24:03 04 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:24:04 04 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:24:04 04 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:24:04 04 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:24:04 04 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:24:04 04 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:24:08 04 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:24:08 04 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0505dz 09:24:08 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x00 09:24:08 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x01 09:24:08 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x02 09:24:08 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x03 09:24:08 04 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) 09:24:08 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x04 09:24:08 04 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0505dz.r in process_file_group 09:24:08 04 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0505dz.r - expected 0x4058408267, generated 0x4ef7c29e 09:24:08 04 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0505dz.r - expected 0x106ae, generated 0xf912 09:24:08 04 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0505dz.r - skipping 09:24:08 04 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0505dz - skipping 09:24:08 04 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:24:08 04 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0508dz 09:24:08 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0508dz.x00 09:24:08 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0508dz.x01 09:24:08 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0508dz.x02 09:24:08 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0508dz.x03 09:24:08 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0508dz.x04 09:24:08 04 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0508dz.r in process_file_group 09:24:09 04 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [508] 09:24:09 04 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [508] 09:24:09 04 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260508) for profiles 09:24:09 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 09:24:09 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/725) 725 to QC_BAD because CT out of water 09:24:09 04 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.090m) 09:24:09 04 Apr 2017 UTC: INFO: QC.py(365): Changed (6/725) 2 3 257 277 300 468 to QC_PROBABLY_BAD because raw temperature spikes 09:24:09 04 Apr 2017 UTC: INFO: QC.py(408): Changed (6/725) 257 277 291 300 317 468 to QC_PROBABLY_BAD because raw conductivity spikes 09:24:09 04 Apr 2017 UTC: INFO: QC.py(180): Changed (6/725) 2 3 257 277 300 468 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 09:24:09 04 Apr 2017 UTC: INFO: QC.py(180): Changed (2/725) 291 317 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 09:24:09 04 Apr 2017 UTC: INFO: QC.py(180): Changed (1/725) 725 to QC_BAD because changed raw cond implies changed raw salinity 09:24:09 04 Apr 2017 UTC: INFO: QC.py(365): Changed (6/725) 2 3 257 277 300 468 to QC_INTERPOLATED because temperature spikes 09:24:09 04 Apr 2017 UTC: INFO: QC.py(408): Changed (6/725) 257 277 291 300 317 468 to QC_INTERPOLATED because conductivity spikes 09:24:09 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/725) 289:293 to QC_BAD because slow apogee CT flow 09:24:09 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/725) 1:6 to QC_BAD because prior to dive start 09:24:09 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/725) 724 to QC_BAD because end of climb 09:24:09 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/725) 1:6 289:293 724 725 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:24:09 04 Apr 2017 UTC: INFO: QC.py(180): Changed (13/725) 1:6 289:293 724 725 to QC_BAD because changed corrected salin implies changed speed 09:24:10 04 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:24:10 04 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 508 interp_salinity data_points in_between 647 650 % suspect thermal-inertia points 648:650 09:24:10 04 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 508 interp_salinity data_points in_between 652 653 % suspect thermal-inertia points 652 653 09:24:10 04 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 508 interp_salinity data_points in_between 655 657 % suspect thermal-inertia points 655:657 09:24:10 04 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 508 interp_salinity data_points in_between 659 667 % suspect thermal-inertia points 659 660 09:24:10 04 Apr 2017 UTC: INFO: QC.py(180): Changed (4/725) 257 277 300 468 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 09:24:10 04 Apr 2017 UTC: INFO: QC.py(180): Changed (1/725) 317 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 09:24:10 04 Apr 2017 UTC: INFO: QC.py(180): Changed (4/725) 257 277 300 468 to QC_INTERPOLATED because changed corrected temp implies changed speed 09:24:10 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.41 cm/s 09:24:10 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.21 cm/s 09:24:10 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:24:10 04 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (211/725) 159 160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:24:10 04 Apr 2017 UTC: INFO: QC.py(180): Changed (3/725) 2 3 468 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:24:10 04 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (211/725) 159 160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 09:24:10 04 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/725) 678 to QC_BAD because bad aa4330 oyxgen 09:24:10 04 Apr 2017 UTC: INFO: QC.py(180): Changed (3/725) 2 3 468 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:24:10 04 Apr 2017 UTC: INFO: QC.py(180): Changed (13/725) 1:6 289:293 724 725 to QC_BAD because changed salinity implies changed optode oxygen 09:24:10 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:24:10 04 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:24:10 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 09:24:10 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 508: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.79% reduction 09:24:10 04 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.508 09:24:10 04 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:24:10 04 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:24:10 04 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:24:11 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 09:24:11 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 09:28:30 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 09:28:32 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 09:28:32 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 09:29:30 04 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:29:30 04 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:29:30 04 Apr 2017 UTC: ERROR: Base.py(1960): Dive [505] failed to process completely. The following files were not processed completely: /home/sg626/sg0505dz.r Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) - consider resend_dive /d 505 03 Glider logout seen - transmissions from glider complete Consult baselog_170403232352 for details. 09:29:30 04 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:29:30 04 Apr 2017 UTC /home/sg626/p6260508.eng /home/sg626/p6260508.asc /home/sg626/p6260508.pro /home/sg626/p6260508.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 09:29:30 04 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:29:30 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:29:30 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:29:30 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:29:30 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:29:30 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:29:30 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:29:30 04 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:29:30 04 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:29:30 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:29:30 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:29:30 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:29:30 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:29:30 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:29:30 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:29:31 04 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:29:31 04 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:29:31 04 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:29:31 04 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:29:31 04 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:29:31 04 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:29:31 04 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:29:31 04 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:29:31 04 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 09:29:31 04 Apr 2017 UTC 13:24:52 04 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 29705 13:24:52 04 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:28:19 04 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 29877 13:28:19 04 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:28:19 04 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:28:19 04 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:28:19 04 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:28:19 04 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170404032818 ] 13:28:19 04 Apr 2017 UTC: INFO: Base.py(1333): PID:29884 13:28:19 04 Apr 2017 UTC: INFO: Base.py(1375): Started processing 13:28:19 04 Apr 2017 UTC 13:28:19 04 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:28:20 04 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:28:20 04 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:28:20 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:28:20 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:509 calls_made:1 call_cycle:0 13:28:20 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:28:20 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:509 calls_made:1 call_cycle:0 13:28:20 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:28:20 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:509 calls_made:1 call_cycle:0 13:28:20 04 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:509 calls_made:1 call_cycle:0 2241.1280 -15757.5250 04/04/17 13:22:31 UTC) to sdrifter@soest.hawaii.edu 13:28:21 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:509 calls_made:1 call_cycle:0 13:28:21 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:28:21 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:509 calls_made:1 call_cycle:0 13:28:21 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:28:21 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:509 calls_made:1 call_cycle:0 13:28:21 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:28:21 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:509 calls_made:1 call_cycle:0 13:28:21 04 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:28:21 04 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:28:29 04 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:28:30 04 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:28:30 04 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:28:30 04 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:28:30 04 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:28:30 04 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:28:34 04 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:28:34 04 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0505dz 13:28:34 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x00 13:28:34 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x01 13:28:34 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x02 13:28:34 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x03 13:28:34 04 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) 13:28:34 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x04 13:28:34 04 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0505dz.r in process_file_group 13:28:34 04 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0505dz.r - expected 0x4058408267, generated 0x4ef7c29e 13:28:34 04 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0505dz.r - expected 0x106ae, generated 0xf912 13:28:34 04 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0505dz.r - skipping 13:28:34 04 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0505dz - skipping 13:28:34 04 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0509lz 13:28:34 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0509lz.x00 13:28:34 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0509lz.x01 13:28:34 04 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0509lz.r in process_file_group 13:28:34 04 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260509.log 13:28:34 04 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:28:34 04 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0509dz 13:28:34 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0509dz.x00 13:28:34 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0509dz.x01 13:28:34 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0509dz.x02 13:28:34 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0509dz.x03 13:28:34 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0509dz.x04 13:28:34 04 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0509dz.r in process_file_group 13:28:35 04 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [509] 13:28:35 04 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [509] 13:28:35 04 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260509) for profiles 13:28:35 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:28:35 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/705) 703 to QC_BAD because CT out of water 13:28:35 04 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.048m) 13:28:35 04 Apr 2017 UTC: INFO: QC.py(365): Changed (9/705) 3 266 285 299 323 324 467 469 470 to QC_PROBABLY_BAD because raw temperature spikes 13:28:35 04 Apr 2017 UTC: INFO: QC.py(408): Changed (5/705) 285 306 323 324 469 to QC_PROBABLY_BAD because raw conductivity spikes 13:28:35 04 Apr 2017 UTC: INFO: QC.py(180): Changed (9/705) 3 266 285 299 323 324 467 469 470 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:28:35 04 Apr 2017 UTC: INFO: QC.py(180): Changed (1/705) 306 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 13:28:35 04 Apr 2017 UTC: INFO: QC.py(180): Changed (1/705) 703 to QC_BAD because changed raw cond implies changed raw salinity 13:28:35 04 Apr 2017 UTC: INFO: QC.py(365): Changed (9/705) 3 266 285 299 323 324 467 469 470 to QC_INTERPOLATED because temperature spikes 13:28:35 04 Apr 2017 UTC: INFO: QC.py(408): Changed (5/705) 285 306 323 324 469 to QC_INTERPOLATED because conductivity spikes 13:28:35 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/705) 283:287 to QC_BAD because slow apogee CT flow 13:28:35 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/705) 1:6 to QC_BAD because prior to dive start 13:28:35 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (3/705) 702 704 705 to QC_BAD because end of climb 13:28:35 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/705) 1:6 283:287 702:705 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:28:35 04 Apr 2017 UTC: INFO: QC.py(180): Changed (15/705) 1:6 283:287 702:705 to QC_BAD because changed corrected salin implies changed speed 13:28:36 04 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:28:36 04 Apr 2017 UTC: INFO: QC.py(180): Changed (7/705) 266 299 323 324 467 469 470 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 13:28:36 04 Apr 2017 UTC: INFO: QC.py(180): Changed (1/705) 306 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 13:28:36 04 Apr 2017 UTC: INFO: QC.py(180): Changed (7/705) 266 299 323 324 467 469 470 to QC_INTERPOLATED because changed corrected temp implies changed speed 13:28:36 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.62 cm/s 13:28:36 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.18 cm/s 13:28:36 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:28:36 04 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (212/705) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:28:36 04 Apr 2017 UTC: INFO: QC.py(180): Changed (5/705) 3 266 467 469 470 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:28:36 04 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (212/705) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:28:36 04 Apr 2017 UTC: INFO: QC.py(180): Changed (5/705) 3 266 467 469 470 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:28:36 04 Apr 2017 UTC: INFO: QC.py(180): Changed (15/705) 1:6 283:287 702:705 to QC_BAD because changed salinity implies changed optode oxygen 13:28:36 04 Apr 2017 UTC: INFO: QC.py(180): Changed (1/705) 306 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 13:28:36 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:28:36 04 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:28:36 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:28:36 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 509: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.13% reduction 13:28:36 04 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.509 13:28:36 04 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:28:36 04 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:28:36 04 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:28:37 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:28:37 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:32:55 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 13:32:57 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:32:57 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:33:54 04 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:33:54 04 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:33:55 04 Apr 2017 UTC: ERROR: Base.py(1960): Dive [505] failed to process completely. The following files were not processed completely: /home/sg626/sg0505dz.r Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) - consider resend_dive /d 505 03 Glider logout seen - transmissions from glider complete Consult baselog_170404032818 for details. 13:33:55 04 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:33:55 04 Apr 2017 UTC /home/sg626/p6260509.log /home/sg626/p6260509.eng /home/sg626/p6260509.asc /home/sg626/p6260509.pro /home/sg626/p6260509.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:33:55 04 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:33:55 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:33:55 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:33:55 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:33:55 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:33:55 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:33:55 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:33:55 04 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:33:55 04 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:33:55 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:33:55 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:33:55 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:33:55 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:33:55 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:33:55 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:33:56 04 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:33:56 04 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:33:56 04 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:33:56 04 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:33:56 04 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:33:56 04 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:33:56 04 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:33:56 04 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:33:57 04 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 13:33:57 04 Apr 2017 UTC 17:29:26 04 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 4014 17:29:26 04 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:33:46 04 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 4243 17:33:46 04 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:33:46 04 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:33:46 04 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:33:46 04 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:33:46 04 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170404073345 ] 17:33:46 04 Apr 2017 UTC: INFO: Base.py(1333): PID:4250 17:33:46 04 Apr 2017 UTC: INFO: Base.py(1375): Started processing 17:33:46 04 Apr 2017 UTC 17:33:46 04 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:33:47 04 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:33:47 04 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:33:47 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:33:47 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:510 calls_made:1 call_cycle:0 17:33:47 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:33:47 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:510 calls_made:1 call_cycle:0 17:33:47 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:33:47 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:510 calls_made:1 call_cycle:0 17:33:47 04 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:510 calls_made:1 call_cycle:0 2238.8880 -15758.0080 04/04/17 17:27:00 UTC) to sdrifter@soest.hawaii.edu 17:33:47 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:510 calls_made:1 call_cycle:0 17:33:47 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:33:47 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:510 calls_made:1 call_cycle:0 17:33:47 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:33:47 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:510 calls_made:1 call_cycle:0 17:33:47 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:33:47 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:510 calls_made:1 call_cycle:0 17:33:47 04 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:33:47 04 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:33:55 04 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:33:57 04 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:33:57 04 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:33:57 04 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:33:57 04 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:33:57 04 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:34:01 04 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:34:01 04 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0505dz 17:34:01 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x00 17:34:01 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x01 17:34:01 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x02 17:34:01 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x03 17:34:01 04 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) 17:34:01 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x04 17:34:01 04 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0505dz.r in process_file_group 17:34:01 04 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0505dz.r - expected 0x4058408267, generated 0x4ef7c29e 17:34:01 04 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0505dz.r - expected 0x106ae, generated 0xf912 17:34:01 04 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0505dz.r - skipping 17:34:01 04 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0505dz - skipping 17:34:01 04 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0510lz 17:34:01 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0510lz.x00 17:34:01 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0510lz.x01 17:34:01 04 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0510lz.r in process_file_group 17:34:01 04 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260510.log 17:34:01 04 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:34:01 04 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0510dz 17:34:01 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0510dz.x00 17:34:01 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0510dz.x01 17:34:01 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0510dz.x02 17:34:01 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0510dz.x03 17:34:01 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0510dz.x04 17:34:01 04 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0510dz.r in process_file_group 17:34:01 04 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [510] 17:34:02 04 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [510] 17:34:02 04 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260510) for profiles 17:34:02 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:34:02 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/707) 706 707 to QC_BAD because CT out of water 17:34:02 04 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.065m) 17:34:02 04 Apr 2017 UTC: INFO: QC.py(365): Changed (7/707) 246 254 268 274 278 279 455 to QC_PROBABLY_BAD because raw temperature spikes 17:34:02 04 Apr 2017 UTC: INFO: QC.py(377): Changed (2/707) 706 707 to QC_BAD because raw salinity below bound 17:34:02 04 Apr 2017 UTC: INFO: QC.py(408): Changed (2/707) 268 455 to QC_PROBABLY_BAD because raw conductivity spikes 17:34:02 04 Apr 2017 UTC: INFO: QC.py(180): Changed (7/707) 246 254 268 274 278 279 455 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:34:02 04 Apr 2017 UTC: INFO: QC.py(365): Changed (7/707) 246 254 268 274 278 279 455 to QC_INTERPOLATED because temperature spikes 17:34:02 04 Apr 2017 UTC: INFO: QC.py(377): Changed (2/707) 706 707 to QC_BAD because salinity below bound 17:34:02 04 Apr 2017 UTC: INFO: QC.py(408): Changed (2/707) 268 455 to QC_INTERPOLATED because conductivity spikes 17:34:02 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/707) 278:282 to QC_BAD because slow apogee CT flow 17:34:02 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/707) 1:6 to QC_BAD because prior to dive start 17:34:02 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/707) 1:6 278:282 706 707 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:34:02 04 Apr 2017 UTC: INFO: QC.py(180): Changed (13/707) 1:6 278:282 706 707 to QC_BAD because changed corrected salin implies changed speed 17:34:03 04 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:34:03 04 Apr 2017 UTC: INFO: QC.py(180): Changed (5/707) 246 254 268 274 455 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 17:34:03 04 Apr 2017 UTC: INFO: QC.py(180): Changed (5/707) 246 254 268 274 455 to QC_INTERPOLATED because changed corrected temp implies changed speed 17:34:03 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.26 cm/s 17:34:03 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.12 cm/s 17:34:03 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:34:03 04 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (211/707) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:34:03 04 Apr 2017 UTC: INFO: QC.py(180): Changed (2/707) 246 455 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:34:03 04 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (211/707) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:34:03 04 Apr 2017 UTC: INFO: QC.py(180): Changed (2/707) 246 455 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:34:03 04 Apr 2017 UTC: INFO: QC.py(180): Changed (13/707) 1:6 278:282 706 707 to QC_BAD because changed salinity implies changed optode oxygen 17:34:03 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:34:03 04 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:34:03 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:34:03 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 510: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.84% reduction 17:34:03 04 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.510 17:34:03 04 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:34:03 04 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:34:03 04 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:34:03 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:34:03 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:38:25 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 17:38:27 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:38:27 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:39:25 04 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:39:25 04 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:39:25 04 Apr 2017 UTC: ERROR: Base.py(1960): Dive [505] failed to process completely. The following files were not processed completely: /home/sg626/sg0505dz.r Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) - consider resend_dive /d 505 03 Glider logout seen - transmissions from glider complete Consult baselog_170404073345 for details. 17:39:25 04 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:39:25 04 Apr 2017 UTC /home/sg626/p6260510.log /home/sg626/p6260510.eng /home/sg626/p6260510.asc /home/sg626/p6260510.pro /home/sg626/p6260510.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:39:25 04 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:39:25 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:39:25 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:39:25 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:39:25 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:39:25 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:39:25 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:39:25 04 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:39:25 04 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:39:25 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:39:25 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:39:25 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:39:25 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:39:25 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:39:25 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:39:26 04 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:39:26 04 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:39:26 04 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:39:26 04 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:39:26 04 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:39:26 04 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:39:26 04 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:39:26 04 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:39:26 04 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 17:39:26 04 Apr 2017 UTC 21:38:24 04 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 13671 21:38:24 04 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:41:39 04 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 13888 21:41:39 04 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:41:39 04 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:41:39 04 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:41:39 04 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:41:39 04 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170404114139 ] 21:41:39 04 Apr 2017 UTC: INFO: Base.py(1333): PID:13895 21:41:39 04 Apr 2017 UTC: INFO: Base.py(1375): Started processing 21:41:39 04 Apr 2017 UTC 21:41:39 04 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:41:41 04 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:41:41 04 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:41:41 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:41:41 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:511 calls_made:1 call_cycle:0 21:41:41 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:41:41 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:511 calls_made:1 call_cycle:0 21:41:41 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:41:41 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:511 calls_made:1 call_cycle:0 21:41:41 04 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:511 calls_made:1 call_cycle:0 2236.7900 -15758.8130 04/04/17 21:36:01 UTC) to sdrifter@soest.hawaii.edu 21:41:41 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:511 calls_made:1 call_cycle:0 21:41:41 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:41:41 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:511 calls_made:1 call_cycle:0 21:41:41 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:41:41 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:511 calls_made:1 call_cycle:0 21:41:41 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:41:41 04 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:511 calls_made:1 call_cycle:0 21:41:41 04 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:41:41 04 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:41:49 04 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:41:51 04 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:41:51 04 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:41:51 04 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:41:51 04 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:41:51 04 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:41:55 04 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:41:55 04 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0505dz 21:41:55 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x00 21:41:55 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x01 21:41:55 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x02 21:41:55 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x03 21:41:55 04 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) 21:41:55 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x04 21:41:55 04 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0505dz.r in process_file_group 21:41:55 04 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0505dz.r - expected 0x4058408267, generated 0x4ef7c29e 21:41:55 04 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0505dz.r - expected 0x106ae, generated 0xf912 21:41:55 04 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0505dz.r - skipping 21:41:55 04 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0505dz - skipping 21:41:55 04 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0511lz 21:41:55 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0511lz.x00 21:41:55 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0511lz.x01 21:41:55 04 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0511lz.r in process_file_group 21:41:55 04 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260511.log 21:41:55 04 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:41:55 04 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0511dz 21:41:55 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0511dz.x00 21:41:55 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0511dz.x01 21:41:55 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0511dz.x02 21:41:55 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0511dz.x03 21:41:55 04 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0511dz.x04 21:41:55 04 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0511dz.r in process_file_group 21:41:55 04 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [511] 21:41:55 04 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [511] 21:41:55 04 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260511) for profiles 21:41:55 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:41:55 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/718) 718 to QC_BAD because CT out of water 21:41:55 04 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.052m) 21:41:55 04 Apr 2017 UTC: INFO: QC.py(365): Changed (12/718) 2 3 120 262 271 277 283 301 303 328 340 716 to QC_PROBABLY_BAD because raw temperature spikes 21:41:55 04 Apr 2017 UTC: INFO: QC.py(408): Changed (3/718) 260 301 303 to QC_PROBABLY_BAD because raw conductivity spikes 21:41:55 04 Apr 2017 UTC: INFO: QC.py(180): Changed (12/718) 2 3 120 262 271 277 283 301 303 328 340 716 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:41:55 04 Apr 2017 UTC: INFO: QC.py(180): Changed (1/718) 260 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 21:41:55 04 Apr 2017 UTC: INFO: QC.py(180): Changed (1/718) 718 to QC_BAD because changed raw cond implies changed raw salinity 21:41:55 04 Apr 2017 UTC: INFO: QC.py(365): Changed (12/718) 2 3 120 262 271 277 283 301 303 328 340 716 to QC_INTERPOLATED because temperature spikes 21:41:55 04 Apr 2017 UTC: INFO: QC.py(408): Changed (3/718) 260 301 303 to QC_INTERPOLATED because conductivity spikes 21:41:55 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/718) 291:295 to QC_BAD because slow apogee CT flow 21:41:56 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/718) 1:6 to QC_BAD because prior to dive start 21:41:56 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (3/718) 715:717 to QC_BAD because end of climb 21:41:56 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/718) 1:6 291:295 715:718 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:41:56 04 Apr 2017 UTC: INFO: QC.py(180): Changed (15/718) 1:6 291:295 715:718 to QC_BAD because changed corrected salin implies changed speed 21:41:56 04 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:41:56 04 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 511 interp_salinity data_points in_between 640 675 % suspect thermal-inertia points 647 21:41:56 04 Apr 2017 UTC: INFO: QC.py(180): Changed (9/718) 120 262 271 277 283 301 303 328 340 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 21:41:56 04 Apr 2017 UTC: INFO: QC.py(180): Changed (1/718) 260 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 21:41:56 04 Apr 2017 UTC: INFO: QC.py(180): Changed (9/718) 120 262 271 277 283 301 303 328 340 to QC_INTERPOLATED because changed corrected temp implies changed speed 21:41:56 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.22 cm/s 21:41:56 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.14 cm/s 21:41:56 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:41:56 04 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (216/718) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:41:56 04 Apr 2017 UTC: INFO: QC.py(180): Changed (6/718) 2 3 120 271 301 716 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:41:56 04 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (216/718) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:41:56 04 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (5/718) 666 714:716 718 to QC_BAD because bad aa4330 oyxgen 21:41:56 04 Apr 2017 UTC: INFO: QC.py(180): Changed (5/718) 2 3 120 271 301 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:41:56 04 Apr 2017 UTC: INFO: QC.py(180): Changed (12/718) 1:6 291:295 717 to QC_BAD because changed salinity implies changed optode oxygen 21:41:56 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:41:56 04 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:41:56 04 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:41:57 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 511: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.09% reduction 21:41:57 04 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.511 21:41:57 04 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:41:57 04 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:41:57 04 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:41:57 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:41:57 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 21:46:19 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 21:46:20 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 21:46:20 04 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 21:47:18 04 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:47:18 04 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:47:18 04 Apr 2017 UTC: ERROR: Base.py(1960): Dive [505] failed to process completely. The following files were not processed completely: /home/sg626/sg0505dz.r Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) - consider resend_dive /d 505 03 Glider logout seen - transmissions from glider complete Consult baselog_170404114139 for details. 21:47:18 04 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:47:18 04 Apr 2017 UTC /home/sg626/p6260511.log /home/sg626/p6260511.eng /home/sg626/p6260511.asc /home/sg626/p6260511.pro /home/sg626/p6260511.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 21:47:18 04 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:47:18 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:47:18 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:47:18 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:47:18 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:47:18 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:47:18 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:47:18 04 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:47:18 04 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:47:18 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:47:18 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:47:18 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:47:19 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:47:19 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:47:19 04 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:47:19 04 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:47:19 04 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:47:19 04 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:47:19 04 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:47:19 04 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:47:19 04 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:47:19 04 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:47:19 04 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:47:19 04 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 21:47:19 04 Apr 2017 UTC 01:44:00 05 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 20310 01:44:00 05 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:47:17 05 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 20449 01:47:17 05 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:47:17 05 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:47:17 05 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:47:17 05 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:47:17 05 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170404154716 ] 01:47:17 05 Apr 2017 UTC: INFO: Base.py(1333): PID:20457 01:47:17 05 Apr 2017 UTC: INFO: Base.py(1375): Started processing 01:47:17 05 Apr 2017 UTC 01:47:17 05 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:47:18 05 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:47:18 05 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:47:18 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:47:18 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:512 calls_made:1 call_cycle:0 01:47:18 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:47:18 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:512 calls_made:1 call_cycle:0 01:47:18 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:47:18 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:512 calls_made:1 call_cycle:0 01:47:18 05 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:512 calls_made:1 call_cycle:0 2234.9220 -15759.6880 04/05/17 01:41:36 UTC) to sdrifter@soest.hawaii.edu 01:47:19 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:512 calls_made:1 call_cycle:0 01:47:19 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:47:19 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:512 calls_made:1 call_cycle:0 01:47:19 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:47:19 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:512 calls_made:1 call_cycle:0 01:47:19 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:47:19 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:512 calls_made:1 call_cycle:0 01:47:19 05 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:47:19 05 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:47:27 05 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:47:28 05 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:47:28 05 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:47:28 05 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:47:28 05 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:47:28 05 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:47:32 05 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:47:32 05 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0505dz 01:47:32 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x00 01:47:32 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x01 01:47:32 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x02 01:47:32 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x03 01:47:32 05 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) 01:47:32 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x04 01:47:32 05 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0505dz.r in process_file_group 01:47:32 05 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0505dz.r - expected 0x4058408267, generated 0x4ef7c29e 01:47:32 05 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0505dz.r - expected 0x106ae, generated 0xf912 01:47:32 05 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0505dz.r - skipping 01:47:32 05 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0505dz - skipping 01:47:32 05 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0512lz 01:47:32 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0512lz.x00 01:47:32 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0512lz.x01 01:47:32 05 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0512lz.r in process_file_group 01:47:32 05 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260512.log 01:47:32 05 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:47:32 05 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0512dz 01:47:32 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0512dz.x00 01:47:32 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0512dz.x01 01:47:32 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0512dz.x02 01:47:32 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0512dz.x03 01:47:32 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0512dz.x04 01:47:32 05 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0512dz.r in process_file_group 01:47:33 05 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [512] 01:47:33 05 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [512] 01:47:33 05 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260512) for profiles 01:47:33 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:47:33 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/718) 716:718 to QC_BAD because CT out of water 01:47:33 05 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.104m) 01:47:33 05 Apr 2017 UTC: INFO: QC.py(365): Changed (12/718) 2 229 231 247 259 270 275 295 296 310 312 717 to QC_PROBABLY_BAD because raw temperature spikes 01:47:33 05 Apr 2017 UTC: INFO: QC.py(408): Changed (10/718) 2 229 231 247 259 270 295 296 310 312 to QC_PROBABLY_BAD because raw conductivity spikes 01:47:33 05 Apr 2017 UTC: INFO: QC.py(180): Changed (12/718) 2 229 231 247 259 270 275 295 296 310 312 717 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:47:33 05 Apr 2017 UTC: INFO: QC.py(180): Changed (3/718) 716:718 to QC_BAD because changed raw cond implies changed raw salinity 01:47:33 05 Apr 2017 UTC: INFO: QC.py(365): Changed (12/718) 2 229 231 247 259 270 275 295 296 310 312 717 to QC_INTERPOLATED because temperature spikes 01:47:33 05 Apr 2017 UTC: INFO: QC.py(408): Changed (10/718) 2 229 231 247 259 270 295 296 310 312 to QC_INTERPOLATED because conductivity spikes 01:47:33 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/718) 273:277 to QC_BAD because slow apogee CT flow 01:47:33 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/718) 1:6 to QC_BAD because prior to dive start 01:47:33 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/718) 1:6 273:277 716:718 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:47:33 05 Apr 2017 UTC: INFO: QC.py(180): Changed (14/718) 1:6 273:277 716:718 to QC_BAD because changed corrected salin implies changed speed 01:47:34 05 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:47:34 05 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 512 interp_salinity data_points in_between 380 425 % suspect thermal-inertia points 415 420 01:47:34 05 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 512 interp_salinity data_points in_between 432 450 % suspect thermal-inertia points 434 01:47:34 05 Apr 2017 UTC: INFO: QC.py(180): Changed (9/718) 229 231 247 259 270 295 296 310 312 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 01:47:34 05 Apr 2017 UTC: INFO: QC.py(180): Changed (9/718) 229 231 247 259 270 295 296 310 312 to QC_INTERPOLATED because changed corrected temp implies changed speed 01:47:34 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.30 cm/s 01:47:34 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.20 cm/s 01:47:34 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:47:34 05 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (212/718) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:47:34 05 Apr 2017 UTC: INFO: QC.py(180): Changed (4/718) 2 231 296 717 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 01:47:34 05 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (212/718) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 01:47:34 05 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/718) 717 to QC_BAD because bad aa4330 oyxgen 01:47:34 05 Apr 2017 UTC: INFO: QC.py(180): Changed (3/718) 2 231 296 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 01:47:34 05 Apr 2017 UTC: INFO: QC.py(180): Changed (13/718) 1:6 273:277 716 718 to QC_BAD because changed salinity implies changed optode oxygen 01:47:34 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:47:34 05 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:47:34 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:47:34 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 512: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.95% reduction 01:47:34 05 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.512 01:47:34 05 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:47:34 05 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:47:34 05 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:47:35 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:47:35 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 01:51:58 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 01:52:00 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 01:52:00 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 01:52:59 05 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:52:59 05 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:52:59 05 Apr 2017 UTC: ERROR: Base.py(1960): Dive [505] failed to process completely. The following files were not processed completely: /home/sg626/sg0505dz.r Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) - consider resend_dive /d 505 03 Glider logout seen - transmissions from glider complete Consult baselog_170404154716 for details. 01:52:59 05 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:52:59 05 Apr 2017 UTC /home/sg626/p6260512.log /home/sg626/p6260512.eng /home/sg626/p6260512.asc /home/sg626/p6260512.pro /home/sg626/p6260512.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 01:52:59 05 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:52:59 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:52:59 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:52:59 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:52:59 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:52:59 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:52:59 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:52:59 05 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:52:59 05 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:52:59 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:52:59 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:52:59 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:52:59 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:52:59 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:52:59 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:52:59 05 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:52:59 05 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:52:59 05 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:52:59 05 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:52:59 05 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:52:59 05 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:52:59 05 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:52:59 05 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:52:59 05 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 01:52:59 05 Apr 2017 UTC 05:30:49 05 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 26212 05:30:49 05 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:34:00 05 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 26340 05:34:00 05 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:34:00 05 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:34:00 05 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:34:00 05 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:34:00 05 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170404193400 ] 05:34:00 05 Apr 2017 UTC: INFO: Base.py(1333): PID:26347 05:34:00 05 Apr 2017 UTC: INFO: Base.py(1375): Started processing 05:34:00 05 Apr 2017 UTC 05:34:00 05 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:34:02 05 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:34:02 05 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:34:02 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:34:02 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:513 calls_made:1 call_cycle:0 05:34:02 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:34:02 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:513 calls_made:1 call_cycle:0 05:34:02 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:34:02 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:513 calls_made:1 call_cycle:0 05:34:02 05 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:513 calls_made:1 call_cycle:0 2232.8710 -15800.1600 04/05/17 05:28:30 UTC) to sdrifter@soest.hawaii.edu 05:34:02 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:513 calls_made:1 call_cycle:0 05:34:02 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:34:02 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:513 calls_made:1 call_cycle:0 05:34:02 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:34:02 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:513 calls_made:1 call_cycle:0 05:34:02 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:34:02 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:513 calls_made:1 call_cycle:0 05:34:02 05 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:34:02 05 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:34:10 05 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:34:12 05 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:34:12 05 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:34:12 05 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:34:12 05 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:34:12 05 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:34:16 05 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:34:16 05 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0505dz 05:34:16 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x00 05:34:16 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x01 05:34:16 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x02 05:34:16 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x03 05:34:16 05 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) 05:34:16 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x04 05:34:16 05 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0505dz.r in process_file_group 05:34:16 05 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0505dz.r - expected 0x4058408267, generated 0x4ef7c29e 05:34:16 05 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0505dz.r - expected 0x106ae, generated 0xf912 05:34:16 05 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0505dz.r - skipping 05:34:16 05 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0505dz - skipping 05:34:16 05 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0513lz 05:34:16 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0513lz.x00 05:34:16 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0513lz.x01 05:34:16 05 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0513lz.r in process_file_group 05:34:16 05 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260513.log 05:34:16 05 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:34:16 05 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0513dz 05:34:16 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0513dz.x00 05:34:16 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0513dz.x01 05:34:16 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0513dz.x02 05:34:16 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0513dz.x03 05:34:16 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0513dz.x04 05:34:16 05 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0513dz.r in process_file_group 05:34:16 05 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [513] 05:34:16 05 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [513] 05:34:16 05 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260513) for profiles 05:34:16 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:34:16 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/672) 669 670 to QC_BAD because CT out of water 05:34:16 05 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.069m) 05:34:16 05 Apr 2017 UTC: INFO: QC.py(365): Changed (11/672) 2 3 224 226 227 231 244 288 417 669 670 to QC_PROBABLY_BAD because raw temperature spikes 05:34:16 05 Apr 2017 UTC: INFO: QC.py(377): Changed (1/672) 669 to QC_BAD because raw salinity below bound 05:34:16 05 Apr 2017 UTC: INFO: QC.py(408): Changed (6/672) 226 227 231 244 288 417 to QC_PROBABLY_BAD because raw conductivity spikes 05:34:16 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (2/672) 671 672 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 05:34:16 05 Apr 2017 UTC: INFO: QC.py(180): Changed (10/672) 2 3 224 226 227 231 244 288 417 670 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:34:16 05 Apr 2017 UTC: INFO: QC.py(180): Changed (3/672) 670:672 to QC_BAD because changed raw cond implies changed raw salinity 05:34:16 05 Apr 2017 UTC: INFO: QC.py(365): Changed (11/672) 2 3 224 226 227 231 244 288 417 669 670 to QC_INTERPOLATED because temperature spikes 05:34:16 05 Apr 2017 UTC: INFO: QC.py(377): Changed (1/672) 669 to QC_BAD because salinity below bound 05:34:16 05 Apr 2017 UTC: INFO: QC.py(408): Changed (6/672) 226 227 231 244 288 417 to QC_INTERPOLATED because conductivity spikes 05:34:16 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (2/672) 671 672 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 05:34:16 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/672) 259:263 to QC_BAD because slow apogee CT flow 05:34:16 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/672) 1:6 to QC_BAD because prior to dive start 05:34:16 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/672) 667 668 to QC_BAD because end of climb 05:34:16 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (17/672) 1:6 259:263 667:672 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:34:16 05 Apr 2017 UTC: INFO: QC.py(180): Changed (17/672) 1:6 259:263 667:672 to QC_BAD because changed corrected salin implies changed speed 05:34:17 05 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:34:17 05 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 513 interp_salinity data_points in_between 383 389 % suspect thermal-inertia points 385 386 05:34:17 05 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 513 interp_salinity data_points in_between 391 395 % suspect thermal-inertia points 392 05:34:17 05 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 513 interp_salinity data_points in_between 593 598 % suspect thermal-inertia points 596:598 05:34:17 05 Apr 2017 UTC: INFO: QC.py(180): Changed (7/672) 224 226 227 231 244 288 417 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 05:34:17 05 Apr 2017 UTC: INFO: QC.py(180): Changed (7/672) 224 226 227 231 244 288 417 to QC_INTERPOLATED because changed corrected temp implies changed speed 05:34:17 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.25 cm/s 05:34:17 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.63 cm/s 05:34:17 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:34:17 05 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (193/672) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:34:17 05 Apr 2017 UTC: INFO: QC.py(180): Changed (7/672) 2 3 226 231 417 669 670 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:34:17 05 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (193/672) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:34:17 05 Apr 2017 UTC: INFO: QC.py(180): Changed (7/672) 2 3 226 231 417 669 670 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:34:17 05 Apr 2017 UTC: INFO: QC.py(180): Changed (17/672) 1:6 259:263 667:672 to QC_BAD because changed salinity implies changed optode oxygen 05:34:17 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:34:17 05 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:34:17 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 05:34:18 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 513: Data set size for profile, binned and kkyy files reduced by 17 points, a 2.53% reduction 05:34:18 05 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.513 05:34:18 05 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:34:18 05 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:34:18 05 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:34:18 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 05:34:18 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 05:38:39 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 05:38:41 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 05:38:41 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 05:39:38 05 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:39:38 05 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:39:39 05 Apr 2017 UTC: ERROR: Base.py(1960): Dive [505] failed to process completely. The following files were not processed completely: /home/sg626/sg0505dz.r Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) - consider resend_dive /d 505 03 Glider logout seen - transmissions from glider complete Consult baselog_170404193400 for details. 05:39:39 05 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:39:39 05 Apr 2017 UTC /home/sg626/p6260513.log /home/sg626/p6260513.eng /home/sg626/p6260513.asc /home/sg626/p6260513.pro /home/sg626/p6260513.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 05:39:39 05 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:39:39 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:39:39 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:39:39 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:39:39 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:39:39 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:39:39 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:39:39 05 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:39:39 05 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:39:39 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:39:39 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:39:39 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:39:39 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:39:39 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:39:39 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:39:39 05 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:39:39 05 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:39:39 05 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:39:39 05 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:39:39 05 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:39:39 05 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:39:39 05 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:39:39 05 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:39:39 05 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 05:39:39 05 Apr 2017 UTC 09:28:00 05 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 32465 09:28:00 05 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:31:16 05 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 32679 09:31:16 05 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:31:16 05 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:31:16 05 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:31:16 05 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:31:16 05 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170404233115 ] 09:31:16 05 Apr 2017 UTC: INFO: Base.py(1333): PID:32686 09:31:16 05 Apr 2017 UTC: INFO: Base.py(1375): Started processing 09:31:16 05 Apr 2017 UTC 09:31:16 05 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:31:17 05 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:31:17 05 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:31:17 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:31:17 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:514 calls_made:1 call_cycle:0 09:31:17 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:31:17 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:514 calls_made:1 call_cycle:0 09:31:17 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:31:17 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:514 calls_made:1 call_cycle:0 09:31:17 05 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:514 calls_made:1 call_cycle:0 2233.4600 -15800.0990 04/05/17 09:25:31 UTC) to sdrifter@soest.hawaii.edu 09:31:17 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:514 calls_made:1 call_cycle:0 09:31:17 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:31:17 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:514 calls_made:1 call_cycle:0 09:31:17 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:31:17 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:514 calls_made:1 call_cycle:0 09:31:17 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:31:17 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:514 calls_made:1 call_cycle:0 09:31:17 05 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:31:17 05 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:31:25 05 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:31:27 05 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:31:27 05 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:31:27 05 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:31:27 05 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:31:27 05 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:31:31 05 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:31:31 05 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0505dz 09:31:31 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x00 09:31:31 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x01 09:31:31 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x02 09:31:31 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x03 09:31:31 05 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) 09:31:31 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x04 09:31:31 05 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0505dz.r in process_file_group 09:31:31 05 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0505dz.r - expected 0x4058408267, generated 0x4ef7c29e 09:31:31 05 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0505dz.r - expected 0x106ae, generated 0xf912 09:31:31 05 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0505dz.r - skipping 09:31:31 05 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0505dz - skipping 09:31:31 05 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0514lz 09:31:31 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0514lz.x00 09:31:31 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0514lz.x01 09:31:31 05 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0514lz.r in process_file_group 09:31:31 05 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260514.log 09:31:31 05 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:31:31 05 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0514dz 09:31:31 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0514dz.x00 09:31:31 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0514dz.x01 09:31:31 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0514dz.x02 09:31:31 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0514dz.x03 09:31:31 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0514dz.x04 09:31:31 05 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0514dz.r in process_file_group 09:31:31 05 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [514] 09:31:31 05 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [514] 09:31:32 05 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260514) for profiles 09:31:32 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 09:31:32 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/688) 688 to QC_BAD because CT out of water 09:31:32 05 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.002m) 09:31:32 05 Apr 2017 UTC: INFO: QC.py(365): Changed (10/688) 2 232 246 255 262 263 268 280 284 289 to QC_PROBABLY_BAD because raw temperature spikes 09:31:32 05 Apr 2017 UTC: INFO: QC.py(377): Changed (1/688) 688 to QC_BAD because raw salinity below bound 09:31:32 05 Apr 2017 UTC: INFO: QC.py(408): Changed (6/688) 229 255 268 280 289 614 to QC_PROBABLY_BAD because raw conductivity spikes 09:31:32 05 Apr 2017 UTC: INFO: QC.py(180): Changed (10/688) 2 232 246 255 262 263 268 280 284 289 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 09:31:32 05 Apr 2017 UTC: INFO: QC.py(180): Changed (2/688) 229 614 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 09:31:32 05 Apr 2017 UTC: INFO: QC.py(365): Changed (10/688) 2 232 246 255 262 263 268 280 284 289 to QC_INTERPOLATED because temperature spikes 09:31:32 05 Apr 2017 UTC: INFO: QC.py(377): Changed (1/688) 688 to QC_BAD because salinity below bound 09:31:32 05 Apr 2017 UTC: INFO: QC.py(408): Changed (6/688) 229 255 268 280 289 614 to QC_INTERPOLATED because conductivity spikes 09:31:32 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/688) 260:264 to QC_BAD because slow apogee CT flow 09:31:32 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/688) 1:6 to QC_BAD because prior to dive start 09:31:32 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/688) 1:6 260:264 688 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:31:32 05 Apr 2017 UTC: INFO: QC.py(180): Changed (12/688) 1:6 260:264 688 to QC_BAD because changed corrected salin implies changed speed 09:31:33 05 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:31:33 05 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 514 interp_salinity data_points in_between 35 44 % suspect thermal-inertia points 36 09:31:33 05 Apr 2017 UTC: INFO: QC.py(180): Changed (7/688) 232 246 255 268 280 284 289 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 09:31:33 05 Apr 2017 UTC: INFO: QC.py(180): Changed (2/688) 229 614 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 09:31:33 05 Apr 2017 UTC: INFO: QC.py(180): Changed (7/688) 232 246 255 268 280 284 289 to QC_INTERPOLATED because changed corrected temp implies changed speed 09:31:33 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.82 cm/s 09:31:33 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.55 cm/s 09:31:33 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:31:33 05 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (207/688) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:31:33 05 Apr 2017 UTC: INFO: QC.py(180): Changed (2/688) 2 246 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:31:33 05 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (207/688) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 09:31:33 05 Apr 2017 UTC: INFO: QC.py(180): Changed (2/688) 2 246 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:31:33 05 Apr 2017 UTC: INFO: QC.py(180): Changed (12/688) 1:6 260:264 688 to QC_BAD because changed salinity implies changed optode oxygen 09:31:33 05 Apr 2017 UTC: INFO: QC.py(180): Changed (1/688) 614 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 09:31:33 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:31:33 05 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:31:33 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 09:31:33 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 514: Data set size for profile, binned and kkyy files reduced by 12 points, a 1.74% reduction 09:31:33 05 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.514 09:31:33 05 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:31:33 05 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:31:33 05 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:31:33 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 09:31:33 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 09:35:57 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 09:35:59 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 09:35:59 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 09:36:57 05 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:36:57 05 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:36:57 05 Apr 2017 UTC: ERROR: Base.py(1960): Dive [505] failed to process completely. The following files were not processed completely: /home/sg626/sg0505dz.r Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) - consider resend_dive /d 505 03 Glider logout seen - transmissions from glider complete Consult baselog_170404233115 for details. 09:36:57 05 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:36:57 05 Apr 2017 UTC /home/sg626/p6260514.log /home/sg626/p6260514.eng /home/sg626/p6260514.asc /home/sg626/p6260514.pro /home/sg626/p6260514.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 09:36:57 05 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:36:57 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:36:57 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:36:57 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:36:57 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:36:57 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:36:57 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:36:57 05 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:36:57 05 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:36:57 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:36:57 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:36:57 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:36:58 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:36:58 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:36:58 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:36:58 05 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:36:58 05 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:36:58 05 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:36:58 05 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:36:58 05 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:36:58 05 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:36:58 05 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:36:58 05 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:36:58 05 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 09:36:58 05 Apr 2017 UTC 13:22:48 05 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 7129 13:22:48 05 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:26:03 05 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 7258 13:26:03 05 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:26:03 05 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:26:03 05 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:26:03 05 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:26:03 05 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170405032603 ] 13:26:03 05 Apr 2017 UTC: INFO: Base.py(1333): PID:7266 13:26:03 05 Apr 2017 UTC: INFO: Base.py(1375): Started processing 13:26:03 05 Apr 2017 UTC 13:26:03 05 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:26:05 05 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:26:05 05 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:26:05 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:26:05 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:515 calls_made:2 call_cycle:0 13:26:05 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:26:05 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:515 calls_made:2 call_cycle:0 13:26:05 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:26:05 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:515 calls_made:2 call_cycle:0 13:26:05 05 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:515 calls_made:2 call_cycle:0 2234.3230 -15800.2280 04/05/17 13:18:19 UTC) to sdrifter@soest.hawaii.edu 13:26:05 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:515 calls_made:2 call_cycle:0 13:26:05 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:26:05 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:515 calls_made:2 call_cycle:0 13:26:05 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:26:05 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:515 calls_made:2 call_cycle:0 13:26:05 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:26:05 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:515 calls_made:2 call_cycle:0 13:26:05 05 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:26:05 05 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:26:13 05 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:26:14 05 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:26:14 05 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:26:14 05 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:26:14 05 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:26:14 05 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:26:19 05 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:26:19 05 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0505dz 13:26:19 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x00 13:26:19 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x01 13:26:19 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x02 13:26:19 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x03 13:26:19 05 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) 13:26:19 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x04 13:26:19 05 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0505dz.r in process_file_group 13:26:19 05 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0505dz.r - expected 0x4058408267, generated 0x4ef7c29e 13:26:19 05 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0505dz.r - expected 0x106ae, generated 0xf912 13:26:19 05 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0505dz.r - skipping 13:26:19 05 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0505dz - skipping 13:26:19 05 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0515lz 13:26:19 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0515lz.x00 13:26:19 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0515lz.x01 13:26:19 05 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0515lz.r in process_file_group 13:26:19 05 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260515.log 13:26:19 05 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:26:19 05 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0515dz 13:26:19 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0515dz.x00 13:26:19 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0515dz.x01 13:26:19 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0515dz.x02 13:26:19 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0515dz.x03 13:26:19 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0515dz.x04 13:26:19 05 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0515dz.r in process_file_group 13:26:19 05 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [515] 13:26:19 05 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [515] 13:26:19 05 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260515) for profiles 13:26:19 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:26:19 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/684) 684 to QC_BAD because CT out of water 13:26:19 05 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.066m) 13:26:19 05 Apr 2017 UTC: INFO: QC.py(365): Changed (7/684) 2 250 252 267 280 285 290 to QC_PROBABLY_BAD because raw temperature spikes 13:26:19 05 Apr 2017 UTC: INFO: QC.py(408): Changed (7/684) 3 250 252 267 280 285 290 to QC_PROBABLY_BAD because raw conductivity spikes 13:26:19 05 Apr 2017 UTC: INFO: QC.py(180): Changed (7/684) 2 250 252 267 280 285 290 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:26:19 05 Apr 2017 UTC: INFO: QC.py(180): Changed (1/684) 3 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 13:26:19 05 Apr 2017 UTC: INFO: QC.py(180): Changed (1/684) 684 to QC_BAD because changed raw cond implies changed raw salinity 13:26:20 05 Apr 2017 UTC: INFO: QC.py(365): Changed (7/684) 2 250 252 267 280 285 290 to QC_INTERPOLATED because temperature spikes 13:26:20 05 Apr 2017 UTC: INFO: QC.py(408): Changed (7/684) 3 250 252 267 280 285 290 to QC_INTERPOLATED because conductivity spikes 13:26:20 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/684) 272:276 to QC_BAD because slow apogee CT flow 13:26:20 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/684) 1:6 to QC_BAD because prior to dive start 13:26:20 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/684) 1:6 272:276 684 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:26:20 05 Apr 2017 UTC: INFO: QC.py(180): Changed (12/684) 1:6 272:276 684 to QC_BAD because changed corrected salin implies changed speed 13:26:20 05 Apr 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 683 13:26:20 05 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:26:20 05 Apr 2017 UTC: INFO: QC.py(180): Changed (6/684) 250 252 267 280 285 290 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 13:26:20 05 Apr 2017 UTC: INFO: QC.py(180): Changed (6/684) 250 252 267 280 285 290 to QC_INTERPOLATED because changed corrected temp implies changed speed 13:26:20 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.36 cm/s 13:26:20 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.23 cm/s 13:26:20 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:26:20 05 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (198/684) 159 160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:26:20 05 Apr 2017 UTC: INFO: QC.py(180): Changed (1/684) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:26:20 05 Apr 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/684) 683 to QC_BAD because slow flow in SBE43 13:26:20 05 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (198/684) 159 160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:26:20 05 Apr 2017 UTC: INFO: QC.py(180): Changed (1/684) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:26:20 05 Apr 2017 UTC: INFO: QC.py(180): Changed (12/684) 1:6 272:276 684 to QC_BAD because changed salinity implies changed optode oxygen 13:26:20 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:26:20 05 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:26:20 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:26:21 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 515: Data set size for profile, binned and kkyy files reduced by 12 points, a 1.75% reduction 13:26:21 05 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.515 13:26:21 05 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:26:21 05 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:26:21 05 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:26:21 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:26:21 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:30:43 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 13:30:45 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:30:45 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:31:43 05 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:31:43 05 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:31:43 05 Apr 2017 UTC: ERROR: Base.py(1960): Dive [505] failed to process completely. The following files were not processed completely: /home/sg626/sg0505dz.r Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) - consider resend_dive /d 505 03 Glider logout seen - transmissions from glider complete Consult baselog_170405032603 for details. 13:31:43 05 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:31:43 05 Apr 2017 UTC /home/sg626/p6260515.log /home/sg626/p6260515.eng /home/sg626/p6260515.asc /home/sg626/p6260515.pro /home/sg626/p6260515.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:31:43 05 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:31:43 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:31:43 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:31:43 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:31:43 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:31:43 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:31:43 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:31:43 05 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:31:43 05 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:31:43 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:31:43 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:31:43 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:31:44 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:31:44 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:31:44 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:31:44 05 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:31:44 05 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:31:44 05 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:31:44 05 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:31:44 05 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:31:44 05 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:31:44 05 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:31:44 05 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:31:44 05 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 13:31:44 05 Apr 2017 UTC 17:11:17 05 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 13034 17:11:17 05 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:14:43 05 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 13174 17:14:43 05 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:14:43 05 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:14:43 05 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:14:43 05 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:14:43 05 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170405071442 ] 17:14:43 05 Apr 2017 UTC: INFO: Base.py(1333): PID:13182 17:14:43 05 Apr 2017 UTC: INFO: Base.py(1375): Started processing 17:14:43 05 Apr 2017 UTC 17:14:43 05 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:14:44 05 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:14:44 05 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:14:44 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:14:44 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:516 calls_made:1 call_cycle:0 17:14:44 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:14:44 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:516 calls_made:1 call_cycle:0 17:14:44 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:14:44 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:516 calls_made:1 call_cycle:0 17:14:44 05 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:516 calls_made:1 call_cycle:0 2232.2260 -15759.5330 04/05/17 17:08:49 UTC) to sdrifter@soest.hawaii.edu 17:14:44 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:516 calls_made:1 call_cycle:0 17:14:44 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:14:44 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:516 calls_made:1 call_cycle:0 17:14:44 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:14:44 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:516 calls_made:1 call_cycle:0 17:14:44 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:14:44 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:516 calls_made:1 call_cycle:0 17:14:44 05 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:14:44 05 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:14:53 05 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:14:54 05 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:14:54 05 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:14:54 05 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:14:54 05 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:14:54 05 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:14:58 05 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:14:58 05 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0505dz 17:14:58 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x00 17:14:58 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x01 17:14:58 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x02 17:14:58 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x03 17:14:58 05 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) 17:14:58 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x04 17:14:58 05 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0505dz.r in process_file_group 17:14:58 05 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0505dz.r - expected 0x4058408267, generated 0x4ef7c29e 17:14:58 05 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0505dz.r - expected 0x106ae, generated 0xf912 17:14:58 05 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0505dz.r - skipping 17:14:58 05 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0505dz - skipping 17:14:58 05 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0516lz 17:14:58 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0516lz.x00 17:14:58 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0516lz.x01 17:14:58 05 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0516lz.r in process_file_group 17:14:58 05 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260516.log 17:14:58 05 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:14:58 05 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0516dz 17:14:58 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0516dz.x00 17:14:58 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0516dz.x01 17:14:58 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0516dz.x02 17:14:58 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0516dz.x03 17:14:58 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0516dz.x04 17:14:58 05 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0516dz.r in process_file_group 17:14:59 05 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [516] 17:14:59 05 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [516] 17:14:59 05 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260516) for profiles 17:14:59 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:14:59 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (4/678) 675:678 to QC_BAD because CT out of water 17:14:59 05 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.135m) 17:14:59 05 Apr 2017 UTC: INFO: QC.py(365): Changed (6/678) 2 3 254 255 268 677 to QC_PROBABLY_BAD because raw temperature spikes 17:14:59 05 Apr 2017 UTC: INFO: QC.py(408): Changed (3/678) 243 254 255 to QC_PROBABLY_BAD because raw conductivity spikes 17:14:59 05 Apr 2017 UTC: INFO: QC.py(180): Changed (6/678) 2 3 254 255 268 677 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:14:59 05 Apr 2017 UTC: INFO: QC.py(180): Changed (1/678) 243 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 17:14:59 05 Apr 2017 UTC: INFO: QC.py(180): Changed (4/678) 675:678 to QC_BAD because changed raw cond implies changed raw salinity 17:14:59 05 Apr 2017 UTC: INFO: QC.py(365): Changed (6/678) 2 3 254 255 268 677 to QC_INTERPOLATED because temperature spikes 17:14:59 05 Apr 2017 UTC: INFO: QC.py(408): Changed (3/678) 243 254 255 to QC_INTERPOLATED because conductivity spikes 17:14:59 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/678) 266:270 to QC_BAD because slow apogee CT flow 17:14:59 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/678) 1:6 to QC_BAD because prior to dive start 17:14:59 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/678) 1:6 266:270 675:678 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:14:59 05 Apr 2017 UTC: INFO: QC.py(180): Changed (15/678) 1:6 266:270 675:678 to QC_BAD because changed corrected salin implies changed speed 17:15:00 05 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:15:00 05 Apr 2017 UTC: INFO: QC.py(180): Changed (2/678) 254 255 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 17:15:00 05 Apr 2017 UTC: INFO: QC.py(180): Changed (1/678) 243 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 17:15:00 05 Apr 2017 UTC: INFO: QC.py(180): Changed (2/678) 254 255 to QC_INTERPOLATED because changed corrected temp implies changed speed 17:15:00 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.62 cm/s 17:15:00 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.59 cm/s 17:15:00 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:15:00 05 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (196/678) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:15:00 05 Apr 2017 UTC: INFO: QC.py(180): Changed (3/678) 2 3 677 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:15:00 05 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (196/678) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:15:00 05 Apr 2017 UTC: INFO: QC.py(180): Changed (3/678) 2 3 677 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:15:00 05 Apr 2017 UTC: INFO: QC.py(180): Changed (15/678) 1:6 266:270 675:678 to QC_BAD because changed salinity implies changed optode oxygen 17:15:00 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:15:00 05 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:15:00 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:15:00 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 516: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.21% reduction 17:15:00 05 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.516 17:15:00 05 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:15:00 05 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:15:00 05 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:15:01 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:15:01 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:19:27 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 17:19:28 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:19:28 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:20:27 05 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:20:27 05 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:20:27 05 Apr 2017 UTC: ERROR: Base.py(1960): Dive [505] failed to process completely. The following files were not processed completely: /home/sg626/sg0505dz.r Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) - consider resend_dive /d 505 03 Glider logout seen - transmissions from glider complete Consult baselog_170405071442 for details. 17:20:27 05 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:20:27 05 Apr 2017 UTC /home/sg626/p6260516.log /home/sg626/p6260516.eng /home/sg626/p6260516.asc /home/sg626/p6260516.pro /home/sg626/p6260516.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:20:27 05 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:20:27 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:20:27 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:20:27 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:20:27 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:20:27 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:20:27 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:20:27 05 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:20:27 05 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:20:27 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:20:27 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:20:27 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:20:28 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:20:28 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:20:28 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:20:28 05 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:20:28 05 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:20:28 05 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:20:28 05 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:20:28 05 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:20:28 05 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:20:28 05 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:20:28 05 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:20:28 05 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 17:20:28 05 Apr 2017 UTC 21:10:49 05 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 19101 21:10:49 05 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:14:04 05 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 19219 21:14:04 05 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:14:04 05 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:14:04 05 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:14:04 05 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:14:04 05 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170405111403 ] 21:14:04 05 Apr 2017 UTC: INFO: Base.py(1333): PID:19227 21:14:04 05 Apr 2017 UTC: INFO: Base.py(1375): Started processing 21:14:04 05 Apr 2017 UTC 21:14:04 05 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:14:06 05 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:14:06 05 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:14:06 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:14:06 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:517 calls_made:1 call_cycle:0 21:14:06 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:14:06 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:517 calls_made:1 call_cycle:0 21:14:06 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:14:06 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:517 calls_made:1 call_cycle:0 21:14:06 05 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:517 calls_made:1 call_cycle:0 2232.4040 -15800.2070 04/05/17 21:08:08 UTC) to sdrifter@soest.hawaii.edu 21:14:06 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:517 calls_made:1 call_cycle:0 21:14:06 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:14:06 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:517 calls_made:1 call_cycle:0 21:14:06 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:14:06 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:517 calls_made:1 call_cycle:0 21:14:06 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:14:06 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:517 calls_made:1 call_cycle:0 21:14:06 05 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:14:06 05 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:14:14 05 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:14:15 05 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:14:15 05 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:14:15 05 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:14:15 05 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:14:15 05 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:14:19 05 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:14:19 05 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0505dz 21:14:19 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x00 21:14:19 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x01 21:14:19 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x02 21:14:19 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x03 21:14:19 05 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) 21:14:19 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x04 21:14:19 05 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0505dz.r in process_file_group 21:14:19 05 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0505dz.r - expected 0x4058408267, generated 0x4ef7c29e 21:14:19 05 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0505dz.r - expected 0x106ae, generated 0xf912 21:14:19 05 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0505dz.r - skipping 21:14:19 05 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0505dz - skipping 21:14:20 05 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0517lz 21:14:20 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0517lz.x00 21:14:20 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0517lz.x01 21:14:20 05 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0517lz.r in process_file_group 21:14:20 05 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260517.log 21:14:20 05 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:14:20 05 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0517dz 21:14:20 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0517dz.x00 21:14:20 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0517dz.x01 21:14:20 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0517dz.x02 21:14:20 05 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0517dz.r in process_file_group 21:14:20 05 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0517dz.r - expected 0x729354217, generated 0x70c20b32 21:14:20 05 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0517dz.r - expected 0x76ff1cd3, generated 0xb14b 21:14:20 05 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0517dz.r - skipping 21:14:20 05 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0517dz - skipping 21:14:20 05 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 21:14:20 05 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [517] 21:14:20 05 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 21:14:20 05 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.517 21:14:20 05 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:14:20 05 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:14:20 05 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:14:20 05 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:14:20 05 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:14:20 05 Apr 2017 UTC: ERROR: Base.py(1960): Dive [505, 517] failed to process completely. The following files were not processed completely: /home/sg626/sg0505dz.r Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) - consider resend_dive /d 505 03 /home/sg626/sg0517dz.r Glider logout not seen - retransmissions from glider possible Consult baselog_170405111403 for details. 21:14:20 05 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:14:20 05 Apr 2017 UTC /home/sg626/p6260517.log 21:14:20 05 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:14:20 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:14:20 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:14:20 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:14:20 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:14:20 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:14:20 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:14:20 05 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:14:20 05 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:14:20 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:14:20 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:14:20 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:14:20 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:14:20 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:14:20 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:14:20 05 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:14:20 05 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:14:20 05 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:14:20 05 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:14:20 05 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:14:20 05 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:14:20 05 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:14:20 05 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:14:20 05 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 21:14:20 05 Apr 2017 UTC 21:18:15 05 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 19491 21:18:16 05 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:19:47 05 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 19603 21:19:47 05 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:19:47 05 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:19:47 05 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:19:47 05 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:19:47 05 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170405111946 ] 21:19:47 05 Apr 2017 UTC: INFO: Base.py(1333): PID:19610 21:19:47 05 Apr 2017 UTC: INFO: Base.py(1375): Started processing 21:19:47 05 Apr 2017 UTC 21:19:47 05 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:19:48 05 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:19:48 05 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:19:48 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:19:48 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:517 calls_made:3 call_cycle:0 21:19:48 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:19:48 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:517 calls_made:3 call_cycle:0 21:19:48 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:19:48 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:517 calls_made:3 call_cycle:0 21:19:48 05 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:517 calls_made:3 call_cycle:0 2232.4040 -15800.2070 04/05/17 21:08:08 UTC) to sdrifter@soest.hawaii.edu 21:19:48 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:517 calls_made:3 call_cycle:0 21:19:48 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:19:48 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:517 calls_made:3 call_cycle:0 21:19:48 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:19:48 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:517 calls_made:3 call_cycle:0 21:19:48 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:19:48 05 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:517 calls_made:3 call_cycle:0 21:19:48 05 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:19:48 05 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:19:57 05 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:19:58 05 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:19:58 05 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:19:58 05 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:19:58 05 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:19:58 05 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:20:03 05 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:20:03 05 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0505dz 21:20:03 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x00 21:20:03 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x01 21:20:03 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x02 21:20:03 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x03 21:20:03 05 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) 21:20:03 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x04 21:20:03 05 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0505dz.r in process_file_group 21:20:03 05 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0505dz.r - expected 0x4058408267, generated 0x4ef7c29e 21:20:03 05 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0505dz.r - expected 0x106ae, generated 0xf912 21:20:03 05 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0505dz.r - skipping 21:20:03 05 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0505dz - skipping 21:20:03 05 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:20:03 05 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0517dz 21:20:03 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0517dz.x00 21:20:03 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0517dz.x01 21:20:03 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0517dz.x02 21:20:03 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0517dz.x03 21:20:03 05 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0517dz.x04 21:20:03 05 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0517dz.r in process_file_group 21:20:03 05 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [517] 21:20:03 05 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [517] 21:20:04 05 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260517) for profiles 21:20:04 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:20:04 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/727) 726 727 to QC_BAD because CT out of water 21:20:04 05 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.061m) 21:20:04 05 Apr 2017 UTC: INFO: QC.py(365): Changed (5/727) 2 264 299 322 726 to QC_PROBABLY_BAD because raw temperature spikes 21:20:04 05 Apr 2017 UTC: INFO: QC.py(377): Changed (1/727) 726 to QC_BAD because raw salinity below bound 21:20:04 05 Apr 2017 UTC: INFO: QC.py(408): Changed (2/727) 264 322 to QC_PROBABLY_BAD because raw conductivity spikes 21:20:04 05 Apr 2017 UTC: INFO: QC.py(180): Changed (4/727) 2 264 299 322 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:20:04 05 Apr 2017 UTC: INFO: QC.py(180): Changed (1/727) 727 to QC_BAD because changed raw cond implies changed raw salinity 21:20:04 05 Apr 2017 UTC: INFO: QC.py(365): Changed (5/727) 2 264 299 322 726 to QC_INTERPOLATED because temperature spikes 21:20:04 05 Apr 2017 UTC: INFO: QC.py(377): Changed (1/727) 726 to QC_BAD because salinity below bound 21:20:04 05 Apr 2017 UTC: INFO: QC.py(408): Changed (2/727) 264 322 to QC_INTERPOLATED because conductivity spikes 21:20:04 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/727) 282:286 to QC_BAD because slow apogee CT flow 21:20:04 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/727) 1:6 to QC_BAD because prior to dive start 21:20:04 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/727) 725 to QC_BAD because end of climb 21:20:04 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/727) 1:6 282:286 725:727 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:20:04 05 Apr 2017 UTC: INFO: QC.py(180): Changed (14/727) 1:6 282:286 725:727 to QC_BAD because changed corrected salin implies changed speed 21:20:04 05 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:20:04 05 Apr 2017 UTC: INFO: QC.py(180): Changed (3/727) 264 299 322 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 21:20:04 05 Apr 2017 UTC: INFO: QC.py(180): Changed (3/727) 264 299 322 to QC_INTERPOLATED because changed corrected temp implies changed speed 21:20:04 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.73 cm/s 21:20:04 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.38 cm/s 21:20:04 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:20:04 05 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (203/727) 163:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:20:04 05 Apr 2017 UTC: INFO: QC.py(180): Changed (2/727) 2 726 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:20:04 05 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (203/727) 163:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:20:04 05 Apr 2017 UTC: INFO: QC.py(180): Changed (2/727) 2 726 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:20:04 05 Apr 2017 UTC: INFO: QC.py(180): Changed (14/727) 1:6 282:286 725:727 to QC_BAD because changed salinity implies changed optode oxygen 21:20:04 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:20:04 05 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:20:05 05 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:20:05 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 517: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.93% reduction 21:20:05 05 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.517 21:20:05 05 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:20:05 05 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:20:05 05 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:20:05 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:20:05 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 21:24:33 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 21:24:34 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 21:24:34 05 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 21:25:33 05 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:25:33 05 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:25:34 05 Apr 2017 UTC: ERROR: Base.py(1960): Dive [505] failed to process completely. The following files were not processed completely: /home/sg626/sg0505dz.r Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) - consider resend_dive /d 505 03 Glider logout seen - transmissions from glider complete Consult baselog_170405111946 for details. 21:25:34 05 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:25:34 05 Apr 2017 UTC /home/sg626/p6260517.eng /home/sg626/p6260517.asc /home/sg626/p6260517.pro /home/sg626/p6260517.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 21:25:34 05 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:25:34 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:25:34 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:25:34 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:25:34 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:25:34 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:25:34 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:25:34 05 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:25:34 05 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:25:34 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:25:34 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:25:34 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:25:34 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:25:34 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:25:34 05 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:25:34 05 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:25:34 05 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:25:34 05 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:25:34 05 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:25:34 05 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:25:34 05 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:25:34 05 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:25:34 05 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:25:34 05 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 21:25:34 05 Apr 2017 UTC 01:11:56 06 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 25719 01:11:56 06 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:15:13 06 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 25849 01:15:13 06 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:15:13 06 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:15:13 06 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:15:13 06 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:15:13 06 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170405151512 ] 01:15:13 06 Apr 2017 UTC: INFO: Base.py(1333): PID:25856 01:15:13 06 Apr 2017 UTC: INFO: Base.py(1375): Started processing 01:15:13 06 Apr 2017 UTC 01:15:13 06 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:15:14 06 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:15:14 06 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:15:14 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:15:14 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:518 calls_made:1 call_cycle:0 01:15:14 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:15:14 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:518 calls_made:1 call_cycle:0 01:15:14 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:15:14 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:518 calls_made:1 call_cycle:0 01:15:14 06 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:518 calls_made:1 call_cycle:0 2232.7360 -15800.4410 04/06/17 01:09:35 UTC) to sdrifter@soest.hawaii.edu 01:15:14 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:518 calls_made:1 call_cycle:0 01:15:14 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:15:14 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:518 calls_made:1 call_cycle:0 01:15:14 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:15:14 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:518 calls_made:1 call_cycle:0 01:15:14 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:15:14 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:518 calls_made:1 call_cycle:0 01:15:14 06 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:15:14 06 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:15:23 06 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:15:24 06 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:15:24 06 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:15:24 06 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:15:24 06 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:15:24 06 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:15:28 06 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:15:28 06 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0505dz 01:15:28 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x00 01:15:28 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x01 01:15:28 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x02 01:15:28 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x03 01:15:28 06 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) 01:15:28 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x04 01:15:28 06 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0505dz.r in process_file_group 01:15:28 06 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0505dz.r - expected 0x4058408267, generated 0x4ef7c29e 01:15:28 06 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0505dz.r - expected 0x106ae, generated 0xf912 01:15:28 06 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0505dz.r - skipping 01:15:28 06 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0505dz - skipping 01:15:28 06 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0518lz 01:15:28 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0518lz.x00 01:15:28 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0518lz.x01 01:15:28 06 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0518lz.r in process_file_group 01:15:28 06 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260518.log 01:15:28 06 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:15:28 06 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0518dz 01:15:28 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0518dz.x00 01:15:28 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0518dz.x01 01:15:28 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0518dz.x02 01:15:28 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0518dz.x03 01:15:28 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0518dz.x04 01:15:28 06 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0518dz.r in process_file_group 01:15:29 06 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [518] 01:15:29 06 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [518] 01:15:29 06 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260518) for profiles 01:15:29 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:15:29 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/694) 693 694 to QC_BAD because CT out of water 01:15:29 06 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.078m) 01:15:29 06 Apr 2017 UTC: INFO: QC.py(365): Changed (2/694) 306 307 to QC_PROBABLY_BAD because raw temperature spikes 01:15:29 06 Apr 2017 UTC: INFO: QC.py(408): Changed (3/694) 2 306 307 to QC_PROBABLY_BAD because raw conductivity spikes 01:15:29 06 Apr 2017 UTC: INFO: QC.py(180): Changed (2/694) 306 307 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:15:29 06 Apr 2017 UTC: INFO: QC.py(180): Changed (1/694) 2 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 01:15:29 06 Apr 2017 UTC: INFO: QC.py(180): Changed (2/694) 693 694 to QC_BAD because changed raw cond implies changed raw salinity 01:15:29 06 Apr 2017 UTC: INFO: QC.py(365): Changed (2/694) 306 307 to QC_INTERPOLATED because temperature spikes 01:15:29 06 Apr 2017 UTC: INFO: QC.py(408): Changed (3/694) 2 306 307 to QC_INTERPOLATED because conductivity spikes 01:15:29 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/694) 266:270 to QC_BAD because slow apogee CT flow 01:15:29 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/694) 1:6 to QC_BAD because prior to dive start 01:15:29 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/694) 1:6 266:270 693 694 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:15:29 06 Apr 2017 UTC: INFO: QC.py(180): Changed (13/694) 1:6 266:270 693 694 to QC_BAD because changed corrected salin implies changed speed 01:15:30 06 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:15:30 06 Apr 2017 UTC: INFO: QC.py(180): Changed (2/694) 306 307 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 01:15:30 06 Apr 2017 UTC: INFO: QC.py(180): Changed (2/694) 306 307 to QC_INTERPOLATED because changed corrected temp implies changed speed 01:15:30 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.73 cm/s 01:15:30 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.12 cm/s 01:15:30 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:15:30 06 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (203/694) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:15:30 06 Apr 2017 UTC: INFO: QC.py(180): Changed (1/694) 306 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 01:15:30 06 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (203/694) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 01:15:30 06 Apr 2017 UTC: INFO: QC.py(180): Changed (1/694) 306 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 01:15:30 06 Apr 2017 UTC: INFO: QC.py(180): Changed (13/694) 1:6 266:270 693 694 to QC_BAD because changed salinity implies changed optode oxygen 01:15:30 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:15:30 06 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:15:30 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:15:30 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 518: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.87% reduction 01:15:30 06 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.518 01:15:30 06 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:15:30 06 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:15:30 06 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:15:31 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:15:31 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 01:19:56 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 01:19:58 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 01:19:58 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 01:20:57 06 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:20:57 06 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:20:57 06 Apr 2017 UTC: ERROR: Base.py(1960): Dive [505] failed to process completely. The following files were not processed completely: /home/sg626/sg0505dz.r Fragment ./sg0505dz.x03 file size (3046) not equal to expected size (4096) - consider resend_dive /d 505 03 Glider logout seen - transmissions from glider complete Consult baselog_170405151512 for details. 01:20:57 06 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:20:57 06 Apr 2017 UTC /home/sg626/p6260518.log /home/sg626/p6260518.eng /home/sg626/p6260518.asc /home/sg626/p6260518.pro /home/sg626/p6260518.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 01:20:57 06 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:20:57 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:20:57 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:20:57 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:20:57 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:20:57 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:20:57 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:20:57 06 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:20:57 06 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:20:57 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:20:57 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:20:57 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:20:58 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:20:58 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:20:58 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:20:58 06 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:20:58 06 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:20:58 06 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:20:58 06 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:20:58 06 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:20:58 06 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:20:58 06 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:20:58 06 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:20:58 06 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 01:20:58 06 Apr 2017 UTC 05:03:49 06 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 31961 05:03:49 06 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {P} 05:09:45 06 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 32075 05:09:45 06 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:09:45 06 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:09:45 06 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:09:45 06 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:09:45 06 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170405190945 ] 05:09:45 06 Apr 2017 UTC: INFO: Base.py(1333): PID:32082 05:09:45 06 Apr 2017 UTC: INFO: Base.py(1375): Started processing 05:09:45 06 Apr 2017 UTC 05:09:45 06 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:09:47 06 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:09:47 06 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:09:47 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:09:47 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:519 calls_made:1 call_cycle:0 05:09:47 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:09:47 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:519 calls_made:1 call_cycle:0 05:09:47 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:09:47 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:519 calls_made:1 call_cycle:0 05:09:47 06 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:519 calls_made:1 call_cycle:0 2232.9440 -15800.4370 04/06/17 05:01:24 UTC) to sdrifter@soest.hawaii.edu 05:09:47 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:519 calls_made:1 call_cycle:0 05:09:47 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:09:47 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:519 calls_made:1 call_cycle:0 05:09:47 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:09:47 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:519 calls_made:1 call_cycle:0 05:09:47 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:09:47 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:519 calls_made:1 call_cycle:0 05:09:47 06 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:09:47 06 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:09:55 06 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:09:57 06 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:09:57 06 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:09:57 06 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:09:57 06 Apr 2017 UTC: INFO: Base.py(743): Processing ./sg0519pz.000 05:09:57 06 Apr 2017 UTC: INFO: Base.py(1593): Processed pdos logfile(s) ['sg0519pz.000'] 05:09:57 06 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:10:01 06 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:10:01 06 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0505dz 05:10:01 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x00 05:10:01 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x01 05:10:01 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x02 05:10:01 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x03 05:10:01 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0505dz.x04 05:10:01 06 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0505dz.r in process_file_group 05:10:02 06 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0519lz 05:10:02 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0519lz.x00 05:10:02 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0519lz.x01 05:10:02 06 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0519lz.r in process_file_group 05:10:02 06 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260519.log 05:10:02 06 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:10:02 06 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0519dz 05:10:02 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0519dz.x00 05:10:02 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0519dz.x01 05:10:02 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0519dz.x02 05:10:02 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0519dz.x03 05:10:02 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0519dz.x04 05:10:02 06 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0519dz.r in process_file_group 05:10:02 06 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [505, 519] 05:10:02 06 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [505, 519] 05:10:02 06 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260505) for profiles 05:10:02 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:10:03 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/742) 740:742 to QC_BAD because CT out of water 05:10:03 06 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.089m) 05:10:03 06 Apr 2017 UTC: INFO: QC.py(365): Changed (2/742) 2 269 to QC_PROBABLY_BAD because raw temperature spikes 05:10:03 06 Apr 2017 UTC: INFO: QC.py(377): Changed (1/742) 741 to QC_BAD because raw salinity below bound 05:10:03 06 Apr 2017 UTC: INFO: QC.py(180): Changed (2/742) 2 269 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:10:03 06 Apr 2017 UTC: INFO: QC.py(180): Changed (2/742) 740 742 to QC_BAD because changed raw cond implies changed raw salinity 05:10:03 06 Apr 2017 UTC: INFO: QC.py(365): Changed (2/742) 2 269 to QC_INTERPOLATED because temperature spikes 05:10:03 06 Apr 2017 UTC: INFO: QC.py(377): Changed (1/742) 741 to QC_BAD because salinity below bound 05:10:03 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/742) 289:293 to QC_BAD because slow apogee CT flow 05:10:03 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/742) 1:6 to QC_BAD because prior to dive start 05:10:03 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/742) 1:6 289:293 740:742 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:10:03 06 Apr 2017 UTC: INFO: QC.py(180): Changed (14/742) 1:6 289:293 740:742 to QC_BAD because changed corrected salin implies changed speed 05:10:03 06 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:10:03 06 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 505 interp_salinity data_points in_between 396 446 % suspect thermal-inertia points 441 05:10:03 06 Apr 2017 UTC: INFO: QC.py(180): Changed (1/742) 269 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 05:10:03 06 Apr 2017 UTC: INFO: QC.py(180): Changed (1/742) 269 to QC_INTERPOLATED because changed corrected temp implies changed speed 05:10:03 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.42 cm/s 05:10:03 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.14 cm/s 05:10:03 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:10:03 06 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (212/742) 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:10:03 06 Apr 2017 UTC: INFO: QC.py(180): Changed (1/742) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:10:03 06 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (212/742) 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:10:03 06 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (3/742) 735 736 742 to QC_BAD because bad aa4330 oyxgen 05:10:04 06 Apr 2017 UTC: INFO: QC.py(180): Changed (1/742) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:10:04 06 Apr 2017 UTC: INFO: QC.py(180): Changed (13/742) 1:6 289:293 740 741 to QC_BAD because changed salinity implies changed optode oxygen 05:10:04 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:10:04 06 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:10:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 05:10:04 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 505: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.89% reduction 05:10:04 06 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260519) for profiles 05:10:04 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:10:04 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/711) 709:711 to QC_BAD because CT out of water 05:10:04 06 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.121m) 05:10:04 06 Apr 2017 UTC: INFO: QC.py(365): Changed (2/711) 298 710 to QC_PROBABLY_BAD because raw temperature spikes 05:10:04 06 Apr 2017 UTC: INFO: QC.py(377): Changed (2/711) 710 711 to QC_BAD because raw salinity below bound 05:10:04 06 Apr 2017 UTC: INFO: QC.py(408): Changed (2/711) 227 298 to QC_PROBABLY_BAD because raw conductivity spikes 05:10:04 06 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <233 pt uncorrectable 952.4m SUSPECT weak conductivity anomaly n:-0.30 p:0.27> 05:10:04 06 Apr 2017 UTC: INFO: QC.py(180): Changed (1/711) 298 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:10:04 06 Apr 2017 UTC: INFO: QC.py(180): Changed (1/711) 227 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 05:10:04 06 Apr 2017 UTC: INFO: QC.py(180): Changed (1/711) 709 to QC_BAD because changed raw cond implies changed raw salinity 05:10:04 06 Apr 2017 UTC: INFO: QC.py(365): Changed (2/711) 298 710 to QC_INTERPOLATED because temperature spikes 05:10:04 06 Apr 2017 UTC: INFO: QC.py(377): Changed (2/711) 710 711 to QC_BAD because salinity below bound 05:10:04 06 Apr 2017 UTC: INFO: QC.py(408): Changed (2/711) 227 298 to QC_INTERPOLATED because conductivity spikes 05:10:04 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/711) 268:272 to QC_BAD because slow apogee CT flow 05:10:04 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/711) 1:6 to QC_BAD because prior to dive start 05:10:04 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/711) 1:6 268:272 709:711 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:10:04 06 Apr 2017 UTC: INFO: QC.py(180): Changed (14/711) 1:6 268:272 709:711 to QC_BAD because changed corrected salin implies changed speed 05:10:05 06 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:10:05 06 Apr 2017 UTC: INFO: QC.py(180): Changed (1/711) 298 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 05:10:05 06 Apr 2017 UTC: INFO: QC.py(180): Changed (1/711) 227 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 05:10:05 06 Apr 2017 UTC: INFO: QC.py(180): Changed (1/711) 298 to QC_INTERPOLATED because changed corrected temp implies changed speed 05:10:05 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.27 cm/s 05:10:05 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.18 cm/s 05:10:05 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:10:05 06 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (195/711) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:10:05 06 Apr 2017 UTC: INFO: QC.py(180): Changed (1/711) 710 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:10:05 06 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (195/711) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:10:05 06 Apr 2017 UTC: INFO: QC.py(180): Changed (1/711) 710 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:10:05 06 Apr 2017 UTC: INFO: QC.py(180): Changed (14/711) 1:6 268:272 709:711 to QC_BAD because changed salinity implies changed optode oxygen 05:10:05 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:10:05 06 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 05:10:05 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 519: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.97% reduction 05:10:05 06 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.519 05:10:05 06 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./pdoscmds.bat to ./pdoscmds.bat.519 05:10:05 06 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:10:05 06 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:10:05 06 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:10:06 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 05:10:06 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 05:14:30 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 05:14:32 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 05:14:32 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 05:15:31 06 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:15:31 06 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:15:31 06 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:15:31 06 Apr 2017 UTC /home/sg626/p6260505.eng /home/sg626/p6260519.log /home/sg626/p6260519.eng /home/sg626/p6260505.asc /home/sg626/p6260519.asc /home/sg626/p6260505.pro /home/sg626/p6260505.nc /home/sg626/p6260519.pro /home/sg626/p6260519.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 05:15:31 06 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:15:31 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:15:31 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:15:31 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:15:31 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:15:31 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:15:31 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:15:31 06 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:15:31 06 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:15:31 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:15:31 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:15:31 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:15:31 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:15:31 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:15:31 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:15:31 06 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:15:31 06 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:15:31 06 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:15:31 06 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:15:31 06 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:15:31 06 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:15:31 06 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:15:31 06 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:15:31 06 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 05:15:31 06 Apr 2017 UTC 09:08:26 06 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 6311 09:08:26 06 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:11:41 06 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 6597 09:11:41 06 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:11:41 06 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:11:41 06 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:11:41 06 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:11:41 06 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170405231140 ] 09:11:41 06 Apr 2017 UTC: INFO: Base.py(1333): PID:6604 09:11:41 06 Apr 2017 UTC: INFO: Base.py(1375): Started processing 09:11:41 06 Apr 2017 UTC 09:11:41 06 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:11:42 06 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:11:42 06 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:11:42 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:11:42 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:520 calls_made:1 call_cycle:0 09:11:42 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:11:42 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:520 calls_made:1 call_cycle:0 09:11:42 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:11:42 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:520 calls_made:1 call_cycle:0 09:11:42 06 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:520 calls_made:1 call_cycle:0 2233.1140 -15800.3940 04/06/17 09:06:01 UTC) to sdrifter@soest.hawaii.edu 09:11:42 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:520 calls_made:1 call_cycle:0 09:11:42 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:11:42 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:520 calls_made:1 call_cycle:0 09:11:42 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:11:42 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:520 calls_made:1 call_cycle:0 09:11:42 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:11:42 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:520 calls_made:1 call_cycle:0 09:11:42 06 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:11:42 06 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:11:51 06 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:11:52 06 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:11:52 06 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:11:52 06 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:11:52 06 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:11:52 06 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:11:57 06 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0520lz 09:11:57 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0520lz.x00 09:11:57 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0520lz.x01 09:11:57 06 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0520lz.r in process_file_group 09:11:57 06 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260520.log 09:11:57 06 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:11:57 06 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0520dz 09:11:57 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0520dz.x00 09:11:57 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0520dz.x01 09:11:57 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0520dz.x02 09:11:57 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0520dz.x03 09:11:57 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0520dz.x04 09:11:57 06 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0520dz.r in process_file_group 09:11:57 06 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [520] 09:11:57 06 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [520] 09:11:57 06 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260520) for profiles 09:11:57 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 09:11:57 06 Apr 2017 UTC: INFO: QC.py(365): Changed (3/721) 2 276 293 to QC_PROBABLY_BAD because raw temperature spikes 09:11:57 06 Apr 2017 UTC: INFO: QC.py(408): Changed (3/721) 238 270 276 to QC_PROBABLY_BAD because raw conductivity spikes 09:11:57 06 Apr 2017 UTC: INFO: QC.py(180): Changed (3/721) 2 276 293 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 09:11:57 06 Apr 2017 UTC: INFO: QC.py(180): Changed (2/721) 238 270 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 09:11:57 06 Apr 2017 UTC: INFO: QC.py(365): Changed (3/721) 2 276 293 to QC_INTERPOLATED because temperature spikes 09:11:57 06 Apr 2017 UTC: INFO: QC.py(408): Changed (3/721) 238 270 276 to QC_INTERPOLATED because conductivity spikes 09:11:57 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/721) 274:278 to QC_BAD because slow apogee CT flow 09:11:57 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/721) 1:6 to QC_BAD because prior to dive start 09:11:57 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/721) 1:6 274:278 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:11:57 06 Apr 2017 UTC: INFO: QC.py(180): Changed (11/721) 1:6 274:278 to QC_BAD because changed corrected salin implies changed speed 09:11:58 06 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:11:58 06 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 520 interp_salinity data_points in_between 374 416 % suspect thermal-inertia points 382 09:11:58 06 Apr 2017 UTC: INFO: QC.py(180): Changed (1/721) 293 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 09:11:58 06 Apr 2017 UTC: INFO: QC.py(180): Changed (2/721) 238 270 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 09:11:58 06 Apr 2017 UTC: INFO: QC.py(180): Changed (1/721) 293 to QC_INTERPOLATED because changed corrected temp implies changed speed 09:11:58 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.30 cm/s 09:11:58 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.30 cm/s 09:11:58 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:11:58 06 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (208/721) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:11:58 06 Apr 2017 UTC: INFO: QC.py(180): Changed (2/721) 2 276 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:11:58 06 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (208/721) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 09:11:58 06 Apr 2017 UTC: INFO: QC.py(180): Changed (2/721) 2 276 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:11:58 06 Apr 2017 UTC: INFO: QC.py(180): Changed (11/721) 1:6 274:278 to QC_BAD because changed salinity implies changed optode oxygen 09:11:58 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:11:58 06 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:11:58 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 09:11:59 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 520: Data set size for profile, binned and kkyy files reduced by 11 points, a 1.53% reduction 09:11:59 06 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.520 09:11:59 06 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:11:59 06 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:11:59 06 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:11:59 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 09:11:59 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 09:16:27 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 09:16:29 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 09:16:29 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 09:17:29 06 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:17:29 06 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:17:29 06 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:17:29 06 Apr 2017 UTC /home/sg626/p6260520.log /home/sg626/p6260520.eng /home/sg626/p6260520.asc /home/sg626/p6260520.pro /home/sg626/p6260520.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 09:17:29 06 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:17:29 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:17:29 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:17:29 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:17:29 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:17:29 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:17:29 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:17:29 06 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:17:29 06 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:17:29 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:17:29 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:17:29 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:17:29 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:17:29 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:17:29 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:17:29 06 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:17:29 06 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:17:29 06 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:17:29 06 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:17:29 06 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:17:29 06 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:17:29 06 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:17:29 06 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:17:29 06 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 09:17:29 06 Apr 2017 UTC 13:10:47 06 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 13251 13:10:47 06 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:14:02 06 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 13387 13:14:02 06 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:14:02 06 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:14:02 06 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:14:02 06 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:14:02 06 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170406031401 ] 13:14:02 06 Apr 2017 UTC: INFO: Base.py(1333): PID:13394 13:14:02 06 Apr 2017 UTC: INFO: Base.py(1375): Started processing 13:14:02 06 Apr 2017 UTC 13:14:02 06 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:14:03 06 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:14:03 06 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:14:03 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:14:03 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:521 calls_made:1 call_cycle:0 13:14:03 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:14:03 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:521 calls_made:1 call_cycle:0 13:14:03 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:14:03 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:521 calls_made:1 call_cycle:0 13:14:03 06 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:521 calls_made:1 call_cycle:0 2233.5310 -15800.0710 04/06/17 13:08:17 UTC) to sdrifter@soest.hawaii.edu 13:14:03 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:521 calls_made:1 call_cycle:0 13:14:03 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:14:03 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:521 calls_made:1 call_cycle:0 13:14:03 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:14:03 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:521 calls_made:1 call_cycle:0 13:14:03 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:14:03 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:521 calls_made:1 call_cycle:0 13:14:03 06 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:14:03 06 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:14:12 06 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:14:13 06 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:14:13 06 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:14:13 06 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:14:13 06 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:14:13 06 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:14:17 06 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0521lz 13:14:17 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0521lz.x00 13:14:17 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0521lz.x01 13:14:17 06 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0521lz.r in process_file_group 13:14:17 06 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260521.log 13:14:17 06 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:14:17 06 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0521dz 13:14:17 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0521dz.x00 13:14:17 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0521dz.x01 13:14:17 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0521dz.x02 13:14:17 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0521dz.x03 13:14:17 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0521dz.x04 13:14:17 06 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0521dz.r in process_file_group 13:14:18 06 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [521] 13:14:18 06 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [521] 13:14:18 06 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260521) for profiles 13:14:18 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:14:18 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/718) 717 718 to QC_BAD because CT out of water 13:14:18 06 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.148m) 13:14:18 06 Apr 2017 UTC: INFO: QC.py(365): Changed (4/718) 2 3 270 603 to QC_PROBABLY_BAD because raw temperature spikes 13:14:18 06 Apr 2017 UTC: INFO: QC.py(408): Changed (1/718) 620 to QC_PROBABLY_BAD because raw conductivity spikes 13:14:18 06 Apr 2017 UTC: INFO: QC.py(180): Changed (4/718) 2 3 270 603 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:14:18 06 Apr 2017 UTC: INFO: QC.py(180): Changed (1/718) 620 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 13:14:18 06 Apr 2017 UTC: INFO: QC.py(180): Changed (2/718) 717 718 to QC_BAD because changed raw cond implies changed raw salinity 13:14:18 06 Apr 2017 UTC: INFO: QC.py(365): Changed (4/718) 2 3 270 603 to QC_INTERPOLATED because temperature spikes 13:14:18 06 Apr 2017 UTC: INFO: QC.py(408): Changed (1/718) 620 to QC_INTERPOLATED because conductivity spikes 13:14:18 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/718) 268:272 to QC_BAD because slow apogee CT flow 13:14:18 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/718) 1:6 to QC_BAD because prior to dive start 13:14:18 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/718) 1:6 268:272 717 718 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:14:18 06 Apr 2017 UTC: INFO: QC.py(180): Changed (13/718) 1:6 268:272 717 718 to QC_BAD because changed corrected salin implies changed speed 13:14:19 06 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:14:19 06 Apr 2017 UTC: INFO: QC.py(180): Changed (1/718) 603 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 13:14:19 06 Apr 2017 UTC: INFO: QC.py(180): Changed (1/718) 620 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 13:14:19 06 Apr 2017 UTC: INFO: QC.py(180): Changed (1/718) 603 to QC_INTERPOLATED because changed corrected temp implies changed speed 13:14:19 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.59 cm/s 13:14:19 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.57 cm/s 13:14:19 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:14:19 06 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (211/718) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:14:19 06 Apr 2017 UTC: INFO: QC.py(180): Changed (3/718) 2 3 603 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:14:19 06 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (211/718) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:14:19 06 Apr 2017 UTC: INFO: QC.py(180): Changed (3/718) 2 3 603 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:14:19 06 Apr 2017 UTC: INFO: QC.py(180): Changed (13/718) 1:6 268:272 717 718 to QC_BAD because changed salinity implies changed optode oxygen 13:14:19 06 Apr 2017 UTC: INFO: QC.py(180): Changed (1/718) 620 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 13:14:19 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:14:19 06 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:14:19 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:14:20 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 521: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.81% reduction 13:14:20 06 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.521 13:14:20 06 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:14:20 06 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:14:20 06 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:14:20 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:14:20 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:18:46 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 13:18:47 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:18:47 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:19:47 06 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:19:47 06 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:19:47 06 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:19:47 06 Apr 2017 UTC /home/sg626/p6260521.log /home/sg626/p6260521.eng /home/sg626/p6260521.asc /home/sg626/p6260521.pro /home/sg626/p6260521.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:19:47 06 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:19:47 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:19:47 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:19:47 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:19:47 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:19:47 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:19:47 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:19:47 06 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:19:47 06 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:19:47 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:19:47 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:19:47 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:19:47 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:19:47 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:19:47 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:19:47 06 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:19:47 06 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:19:47 06 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:19:47 06 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:19:47 06 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:19:47 06 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:19:47 06 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:19:47 06 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:19:48 06 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 13:19:48 06 Apr 2017 UTC 17:12:42 06 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 19528 17:12:42 06 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:16:03 06 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 19660 17:16:03 06 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:16:03 06 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:16:03 06 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:16:03 06 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:16:03 06 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170406071603 ] 17:16:03 06 Apr 2017 UTC: INFO: Base.py(1333): PID:19667 17:16:04 06 Apr 2017 UTC: INFO: Base.py(1375): Started processing 17:16:04 06 Apr 2017 UTC 17:16:04 06 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:16:05 06 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:16:05 06 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:16:05 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:16:05 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:522 calls_made:2 call_cycle:0 17:16:05 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:16:05 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:522 calls_made:2 call_cycle:0 17:16:05 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:16:05 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:522 calls_made:2 call_cycle:0 17:16:05 06 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:522 calls_made:2 call_cycle:0 2234.1220 -15800.0100 04/06/17 17:08:24 UTC) to sdrifter@soest.hawaii.edu 17:16:05 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:522 calls_made:2 call_cycle:0 17:16:05 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:16:05 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:522 calls_made:2 call_cycle:0 17:16:05 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:16:05 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:522 calls_made:2 call_cycle:0 17:16:05 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:16:05 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:522 calls_made:2 call_cycle:0 17:16:05 06 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:16:05 06 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:16:13 06 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:16:15 06 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:16:15 06 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:16:15 06 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:16:15 06 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:16:15 06 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:16:19 06 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0522lz 17:16:19 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0522lz.x00 17:16:19 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0522lz.x01 17:16:19 06 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0522lz.r in process_file_group 17:16:19 06 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260522.log 17:16:19 06 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:16:19 06 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0522dz 17:16:19 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0522dz.x00 17:16:19 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0522dz.x01 17:16:19 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0522dz.x02 17:16:19 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0522dz.x03 17:16:19 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0522dz.x04 17:16:19 06 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0522dz.r in process_file_group 17:16:20 06 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [522] 17:16:20 06 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [522] 17:16:20 06 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260522) for profiles 17:16:20 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:16:20 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/720) 717 720 to QC_BAD because CT out of water 17:16:20 06 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.066m) 17:16:20 06 Apr 2017 UTC: INFO: QC.py(365): Changed (11/720) 2 3 241 274 298 302 303 306 312 717 718 to QC_PROBABLY_BAD because raw temperature spikes 17:16:20 06 Apr 2017 UTC: INFO: QC.py(377): Changed (1/720) 720 to QC_BAD because raw salinity below bound 17:16:20 06 Apr 2017 UTC: INFO: QC.py(408): Changed (7/720) 241 298 302 303 305 312 718 to QC_PROBABLY_BAD because raw conductivity spikes 17:16:20 06 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <248 pt uncorrectable 960.6m SUSPECT weak conductivity anomaly n:-0.34 p:0.34> 17:16:20 06 Apr 2017 UTC: INFO: QC.py(180): Changed (11/720) 2 3 241 274 298 302 303 306 312 717 718 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:16:20 06 Apr 2017 UTC: INFO: QC.py(180): Changed (1/720) 305 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 17:16:20 06 Apr 2017 UTC: INFO: QC.py(180): Changed (1/720) 717 to QC_BAD because changed raw cond implies changed raw salinity 17:16:20 06 Apr 2017 UTC: INFO: QC.py(365): Changed (11/720) 2 3 241 274 298 302 303 306 312 717 718 to QC_INTERPOLATED because temperature spikes 17:16:20 06 Apr 2017 UTC: INFO: QC.py(377): Changed (1/720) 720 to QC_BAD because salinity below bound 17:16:20 06 Apr 2017 UTC: INFO: QC.py(408): Changed (7/720) 241 298 302 303 305 312 718 to QC_INTERPOLATED because conductivity spikes 17:16:20 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/720) 272:276 to QC_BAD because slow apogee CT flow 17:16:20 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/720) 1:6 to QC_BAD because prior to dive start 17:16:20 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/720) 718 719 to QC_BAD because end of climb 17:16:20 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/720) 1:6 272:276 717:720 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:16:20 06 Apr 2017 UTC: INFO: QC.py(180): Changed (15/720) 1:6 272:276 717:720 to QC_BAD because changed corrected salin implies changed speed 17:16:21 06 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:16:21 06 Apr 2017 UTC: INFO: QC.py(180): Changed (6/720) 241 298 302 303 306 312 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 17:16:21 06 Apr 2017 UTC: INFO: QC.py(180): Changed (1/720) 305 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 17:16:21 06 Apr 2017 UTC: INFO: QC.py(180): Changed (6/720) 241 298 302 303 306 312 to QC_INTERPOLATED because changed corrected temp implies changed speed 17:16:21 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.88 cm/s 17:16:21 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.02 cm/s 17:16:21 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:16:21 06 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (205/720) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:16:21 06 Apr 2017 UTC: INFO: QC.py(180): Changed (6/720) 2 3 241 306 717 718 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:16:21 06 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (205/720) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:16:21 06 Apr 2017 UTC: INFO: QC.py(180): Changed (6/720) 2 3 241 306 717 718 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:16:21 06 Apr 2017 UTC: INFO: QC.py(180): Changed (15/720) 1:6 272:276 717:720 to QC_BAD because changed salinity implies changed optode oxygen 17:16:21 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:16:21 06 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:16:21 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:16:21 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 522: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.08% reduction 17:16:22 06 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.522 17:16:22 06 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:16:22 06 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:16:22 06 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:16:22 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:16:22 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:20:49 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 17:20:51 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:20:51 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:21:51 06 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:21:51 06 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:21:51 06 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:21:51 06 Apr 2017 UTC /home/sg626/p6260522.log /home/sg626/p6260522.eng /home/sg626/p6260522.asc /home/sg626/p6260522.pro /home/sg626/p6260522.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:21:51 06 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:21:51 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:21:51 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:21:51 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:21:51 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:21:51 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:21:51 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:21:51 06 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:21:51 06 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:21:51 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:21:51 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:21:51 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:21:51 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:21:51 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:21:51 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:21:51 06 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:21:51 06 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:21:51 06 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:21:51 06 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:21:51 06 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:21:51 06 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:21:51 06 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:21:51 06 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:21:51 06 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 17:21:51 06 Apr 2017 UTC 21:05:32 06 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 26440 21:05:32 06 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:08:46 06 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 26699 21:08:46 06 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:08:46 06 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:08:46 06 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:08:46 06 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:08:46 06 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170406110846 ] 21:08:46 06 Apr 2017 UTC: INFO: Base.py(1333): PID:26706 21:08:46 06 Apr 2017 UTC: INFO: Base.py(1375): Started processing 21:08:46 06 Apr 2017 UTC 21:08:46 06 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:08:48 06 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:08:48 06 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:08:48 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:08:48 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:523 calls_made:1 call_cycle:0 21:08:48 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:08:48 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:523 calls_made:1 call_cycle:0 21:08:48 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:08:48 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:523 calls_made:1 call_cycle:0 21:08:48 06 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:523 calls_made:1 call_cycle:0 2231.5570 -15759.6570 04/06/17 21:02:57 UTC) to sdrifter@soest.hawaii.edu 21:08:48 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:523 calls_made:1 call_cycle:0 21:08:48 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:08:48 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:523 calls_made:1 call_cycle:0 21:08:48 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:08:48 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:523 calls_made:1 call_cycle:0 21:08:48 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:08:48 06 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:523 calls_made:1 call_cycle:0 21:08:48 06 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:08:48 06 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:08:56 06 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:08:58 06 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:08:58 06 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:08:58 06 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:08:58 06 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:08:58 06 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:09:02 06 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0523lz 21:09:02 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0523lz.x00 21:09:02 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0523lz.x01 21:09:02 06 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0523lz.r in process_file_group 21:09:02 06 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260523.log 21:09:02 06 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:09:02 06 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0523dz 21:09:02 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0523dz.x00 21:09:02 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0523dz.x01 21:09:02 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0523dz.x02 21:09:02 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0523dz.x03 21:09:02 06 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0523dz.x04 21:09:02 06 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0523dz.r in process_file_group 21:09:03 06 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [523] 21:09:03 06 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [523] 21:09:03 06 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260523) for profiles 21:09:03 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:09:03 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/666) 665 666 to QC_BAD because CT out of water 21:09:03 06 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.103m) 21:09:03 06 Apr 2017 UTC: INFO: QC.py(365): Changed (7/666) 42 43 231 236 270 298 300 to QC_PROBABLY_BAD because raw temperature spikes 21:09:03 06 Apr 2017 UTC: INFO: QC.py(408): Changed (8/666) 42 43 227 231 236 282 298 300 to QC_PROBABLY_BAD because raw conductivity spikes 21:09:03 06 Apr 2017 UTC: INFO: QC.py(180): Changed (7/666) 42 43 231 236 270 298 300 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:09:03 06 Apr 2017 UTC: INFO: QC.py(180): Changed (2/666) 227 282 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 21:09:03 06 Apr 2017 UTC: INFO: QC.py(180): Changed (2/666) 665 666 to QC_BAD because changed raw cond implies changed raw salinity 21:09:03 06 Apr 2017 UTC: INFO: QC.py(365): Changed (7/666) 42 43 231 236 270 298 300 to QC_INTERPOLATED because temperature spikes 21:09:03 06 Apr 2017 UTC: INFO: QC.py(408): Changed (8/666) 42 43 227 231 236 282 298 300 to QC_INTERPOLATED because conductivity spikes 21:09:03 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/666) 268:272 to QC_BAD because slow apogee CT flow 21:09:03 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/666) 1:6 to QC_BAD because prior to dive start 21:09:03 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/666) 1:6 268:272 665 666 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:09:03 06 Apr 2017 UTC: INFO: QC.py(180): Changed (13/666) 1:6 268:272 665 666 to QC_BAD because changed corrected salin implies changed speed 21:09:04 06 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:09:04 06 Apr 2017 UTC: INFO: QC.py(180): Changed (6/666) 42 43 231 236 298 300 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 21:09:04 06 Apr 2017 UTC: INFO: QC.py(180): Changed (2/666) 227 282 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 21:09:04 06 Apr 2017 UTC: INFO: QC.py(180): Changed (6/666) 42 43 231 236 298 300 to QC_INTERPOLATED because changed corrected temp implies changed speed 21:09:04 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.19 cm/s 21:09:04 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.58 cm/s 21:09:04 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:09:04 06 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (204/666) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:09:04 06 Apr 2017 UTC: INFO: QC.py(180): Changed (4/666) 42 43 231 236 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:09:04 06 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (204/666) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:09:04 06 Apr 2017 UTC: INFO: QC.py(180): Changed (4/666) 42 43 231 236 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:09:04 06 Apr 2017 UTC: INFO: QC.py(180): Changed (13/666) 1:6 268:272 665 666 to QC_BAD because changed salinity implies changed optode oxygen 21:09:04 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:09:04 06 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:09:04 06 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:09:04 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 523: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.95% reduction 21:09:04 06 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.523 21:09:04 06 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:09:04 06 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:09:04 06 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:09:05 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:09:05 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 21:13:33 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 21:13:34 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 21:13:34 06 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 21:14:35 06 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:14:35 06 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:14:35 06 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:14:35 06 Apr 2017 UTC /home/sg626/p6260523.log /home/sg626/p6260523.eng /home/sg626/p6260523.asc /home/sg626/p6260523.pro /home/sg626/p6260523.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 21:14:35 06 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:14:35 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:14:35 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:14:35 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:14:35 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:14:35 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:14:35 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:14:35 06 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:14:35 06 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:14:35 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:14:35 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:14:35 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:14:35 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:14:35 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:14:35 06 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:14:35 06 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:14:35 06 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:14:35 06 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:14:35 06 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:14:35 06 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:14:35 06 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:14:35 06 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:14:35 06 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:14:35 06 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 21:14:35 06 Apr 2017 UTC 01:13:59 07 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 5702 01:13:59 07 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:17:11 07 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 5892 01:17:11 07 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:17:11 07 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:17:11 07 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:17:11 07 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:17:11 07 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170406151711 ] 01:17:11 07 Apr 2017 UTC: INFO: Base.py(1333): PID:5899 01:17:12 07 Apr 2017 UTC: INFO: Base.py(1375): Started processing 01:17:12 07 Apr 2017 UTC 01:17:12 07 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:17:13 07 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:17:13 07 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:17:13 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:17:13 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:524 calls_made:1 call_cycle:0 01:17:13 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:17:13 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:524 calls_made:1 call_cycle:0 01:17:13 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:17:13 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:524 calls_made:1 call_cycle:0 01:17:13 07 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:524 calls_made:1 call_cycle:0 2231.6700 -15800.2120 04/07/17 01:11:30 UTC) to sdrifter@soest.hawaii.edu 01:17:13 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:524 calls_made:1 call_cycle:0 01:17:13 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:17:13 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:524 calls_made:1 call_cycle:0 01:17:13 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:17:13 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:524 calls_made:1 call_cycle:0 01:17:13 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:17:13 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:524 calls_made:1 call_cycle:0 01:17:13 07 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:17:13 07 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:17:22 07 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:17:23 07 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:17:23 07 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:17:23 07 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:17:23 07 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:17:23 07 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:17:27 07 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0524lz 01:17:27 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0524lz.x00 01:17:27 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0524lz.x01 01:17:27 07 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0524lz.r in process_file_group 01:17:27 07 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260524.log 01:17:27 07 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:17:27 07 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0524dz 01:17:27 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0524dz.x00 01:17:27 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0524dz.x01 01:17:27 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0524dz.x02 01:17:27 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0524dz.x03 01:17:27 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0524dz.x04 01:17:27 07 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0524dz.r in process_file_group 01:17:28 07 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [524] 01:17:28 07 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [524] 01:17:28 07 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260524) for profiles 01:17:28 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:17:28 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/721) 720 721 to QC_BAD because CT out of water 01:17:28 07 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.033m) 01:17:28 07 Apr 2017 UTC: INFO: QC.py(365): Changed (7/721) 3 247 248 265 304 311 720 to QC_PROBABLY_BAD because raw temperature spikes 01:17:28 07 Apr 2017 UTC: INFO: QC.py(377): Changed (1/721) 720 to QC_BAD because raw salinity below bound 01:17:28 07 Apr 2017 UTC: INFO: QC.py(408): Changed (4/721) 248 265 304 311 to QC_PROBABLY_BAD because raw conductivity spikes 01:17:28 07 Apr 2017 UTC: INFO: QC.py(180): Changed (6/721) 3 247 248 265 304 311 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:17:28 07 Apr 2017 UTC: INFO: QC.py(180): Changed (1/721) 721 to QC_BAD because changed raw cond implies changed raw salinity 01:17:28 07 Apr 2017 UTC: INFO: QC.py(365): Changed (7/721) 3 247 248 265 304 311 720 to QC_INTERPOLATED because temperature spikes 01:17:28 07 Apr 2017 UTC: INFO: QC.py(377): Changed (1/721) 720 to QC_BAD because salinity below bound 01:17:28 07 Apr 2017 UTC: INFO: QC.py(408): Changed (4/721) 248 265 304 311 to QC_INTERPOLATED because conductivity spikes 01:17:28 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/721) 279:283 to QC_BAD because slow apogee CT flow 01:17:28 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/721) 1:6 to QC_BAD because prior to dive start 01:17:28 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/721) 1:6 279:283 720 721 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:17:28 07 Apr 2017 UTC: INFO: QC.py(180): Changed (13/721) 1:6 279:283 720 721 to QC_BAD because changed corrected salin implies changed speed 01:17:29 07 Apr 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 719 01:17:29 07 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:17:29 07 Apr 2017 UTC: INFO: QC.py(180): Changed (5/721) 247 248 265 304 311 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 01:17:29 07 Apr 2017 UTC: INFO: QC.py(180): Changed (5/721) 247 248 265 304 311 to QC_INTERPOLATED because changed corrected temp implies changed speed 01:17:29 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.94 cm/s 01:17:29 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.91 cm/s 01:17:29 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:17:29 07 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (215/721) 155 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:17:29 07 Apr 2017 UTC: INFO: QC.py(180): Changed (3/721) 3 311 720 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 01:17:29 07 Apr 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/721) 719 to QC_BAD because slow flow in SBE43 01:17:29 07 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (215/721) 155 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 01:17:29 07 Apr 2017 UTC: INFO: QC.py(180): Changed (3/721) 3 311 720 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 01:17:29 07 Apr 2017 UTC: INFO: QC.py(180): Changed (13/721) 1:6 279:283 720 721 to QC_BAD because changed salinity implies changed optode oxygen 01:17:29 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:17:29 07 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:17:29 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:17:29 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 524: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.80% reduction 01:17:30 07 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.524 01:17:30 07 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:17:30 07 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:17:30 07 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:17:30 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:17:30 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 01:21:58 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 01:22:00 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 01:22:00 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 01:23:00 07 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:23:00 07 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:23:00 07 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:23:00 07 Apr 2017 UTC /home/sg626/p6260524.log /home/sg626/p6260524.eng /home/sg626/p6260524.asc /home/sg626/p6260524.pro /home/sg626/p6260524.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 01:23:00 07 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:23:00 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:23:00 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:23:00 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:23:00 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:23:00 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:23:00 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:23:00 07 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:23:00 07 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:23:00 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:23:00 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:23:00 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:23:00 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:23:00 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:23:00 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:23:00 07 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:23:00 07 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:23:00 07 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:23:00 07 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:23:00 07 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:23:00 07 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:23:00 07 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:23:00 07 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:23:00 07 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 01:23:00 07 Apr 2017 UTC 05:25:11 07 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 19824 05:25:11 07 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:28:20 07 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 20095 05:28:20 07 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:28:20 07 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:28:20 07 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:28:20 07 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:28:20 07 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170406192820 ] 05:28:20 07 Apr 2017 UTC: INFO: Base.py(1333): PID:20103 05:28:20 07 Apr 2017 UTC: INFO: Base.py(1375): Started processing 05:28:20 07 Apr 2017 UTC 05:28:20 07 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:28:22 07 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:28:22 07 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:28:22 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:28:22 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:525 calls_made:1 call_cycle:0 05:28:22 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:28:22 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:525 calls_made:1 call_cycle:0 05:28:22 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:28:22 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:525 calls_made:1 call_cycle:0 05:28:22 07 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:525 calls_made:1 call_cycle:0 2232.1110 -15800.7220 04/07/17 05:22:47 UTC) to sdrifter@soest.hawaii.edu 05:28:22 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:525 calls_made:1 call_cycle:0 05:28:22 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:28:22 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:525 calls_made:1 call_cycle:0 05:28:22 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:28:22 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:525 calls_made:1 call_cycle:0 05:28:22 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:28:22 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:525 calls_made:1 call_cycle:0 05:28:22 07 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:28:22 07 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:28:30 07 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:28:32 07 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:28:32 07 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:28:32 07 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:28:32 07 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:28:32 07 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:28:36 07 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0525lz 05:28:36 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0525lz.x00 05:28:36 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0525lz.x01 05:28:36 07 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0525lz.r in process_file_group 05:28:36 07 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260525.log 05:28:36 07 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:28:36 07 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0525dz 05:28:36 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0525dz.x00 05:28:36 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0525dz.x01 05:28:36 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0525dz.x02 05:28:36 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0525dz.x03 05:28:36 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0525dz.x04 05:28:36 07 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0525dz.r in process_file_group 05:28:37 07 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [525] 05:28:37 07 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [525] 05:28:37 07 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260525) for profiles 05:28:37 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:28:37 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (4/737) 734:737 to QC_BAD because CT out of water 05:28:37 07 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.107m) 05:28:37 07 Apr 2017 UTC: INFO: QC.py(365): Changed (4/737) 2 253 348 735 to QC_PROBABLY_BAD because raw temperature spikes 05:28:37 07 Apr 2017 UTC: INFO: QC.py(377): Changed (4/737) 734:737 to QC_BAD because raw salinity below bound 05:28:37 07 Apr 2017 UTC: INFO: QC.py(408): Changed (2/737) 237 348 to QC_PROBABLY_BAD because raw conductivity spikes 05:28:37 07 Apr 2017 UTC: INFO: QC.py(180): Changed (3/737) 2 253 348 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:28:37 07 Apr 2017 UTC: INFO: QC.py(180): Changed (1/737) 237 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 05:28:37 07 Apr 2017 UTC: INFO: QC.py(365): Changed (4/737) 2 253 348 735 to QC_INTERPOLATED because temperature spikes 05:28:37 07 Apr 2017 UTC: INFO: QC.py(377): Changed (4/737) 734:737 to QC_BAD because salinity below bound 05:28:37 07 Apr 2017 UTC: INFO: QC.py(408): Changed (2/737) 237 348 to QC_INTERPOLATED because conductivity spikes 05:28:37 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/737) 291:295 to QC_BAD because slow apogee CT flow 05:28:37 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/737) 1:6 to QC_BAD because prior to dive start 05:28:37 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/737) 1:6 291:295 734:737 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:28:37 07 Apr 2017 UTC: INFO: QC.py(180): Changed (15/737) 1:6 291:295 734:737 to QC_BAD because changed corrected salin implies changed speed 05:28:38 07 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:28:38 07 Apr 2017 UTC: INFO: QC.py(180): Changed (2/737) 253 348 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 05:28:38 07 Apr 2017 UTC: INFO: QC.py(180): Changed (1/737) 237 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 05:28:38 07 Apr 2017 UTC: INFO: QC.py(180): Changed (2/737) 253 348 to QC_INTERPOLATED because changed corrected temp implies changed speed 05:28:38 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.28 cm/s 05:28:38 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.96 cm/s 05:28:38 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:28:38 07 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (220/737) 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:28:38 07 Apr 2017 UTC: INFO: QC.py(180): Changed (2/737) 2 735 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:28:38 07 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (220/737) 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:28:38 07 Apr 2017 UTC: INFO: QC.py(180): Changed (2/737) 2 735 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:28:38 07 Apr 2017 UTC: INFO: QC.py(180): Changed (15/737) 1:6 291:295 734:737 to QC_BAD because changed salinity implies changed optode oxygen 05:28:38 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:28:38 07 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:28:38 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 05:28:38 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 525: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.04% reduction 05:28:39 07 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.525 05:28:39 07 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:28:39 07 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:28:39 07 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:28:39 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 05:28:39 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 05:33:08 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 05:33:10 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 05:33:10 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 05:34:12 07 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:34:12 07 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:34:12 07 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:34:12 07 Apr 2017 UTC /home/sg626/p6260525.log /home/sg626/p6260525.eng /home/sg626/p6260525.asc /home/sg626/p6260525.pro /home/sg626/p6260525.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 05:34:12 07 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:34:12 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:34:12 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:34:12 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:34:12 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:34:12 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:34:12 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:34:12 07 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:34:12 07 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:34:12 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:34:12 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:34:12 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:34:12 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:34:12 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:34:12 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:34:12 07 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:34:12 07 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:34:12 07 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:34:12 07 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:34:12 07 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:34:12 07 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:34:12 07 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:34:12 07 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:34:12 07 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 05:34:12 07 Apr 2017 UTC 09:31:06 07 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 5442 09:31:06 07 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:34:28 07 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 5722 09:34:28 07 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:34:28 07 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:34:28 07 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:34:28 07 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:34:28 07 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170406233427 ] 09:34:28 07 Apr 2017 UTC: INFO: Base.py(1333): PID:5729 09:34:28 07 Apr 2017 UTC: INFO: Base.py(1375): Started processing 09:34:28 07 Apr 2017 UTC 09:34:28 07 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:34:29 07 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:34:29 07 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:34:29 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:34:29 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:526 calls_made:1 call_cycle:0 09:34:29 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:34:29 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:526 calls_made:1 call_cycle:0 09:34:29 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:34:29 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:526 calls_made:1 call_cycle:0 09:34:29 07 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:526 calls_made:1 call_cycle:0 2232.4150 -15800.5700 04/07/17 09:28:39 UTC) to sdrifter@soest.hawaii.edu 09:34:30 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:526 calls_made:1 call_cycle:0 09:34:30 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:34:30 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:526 calls_made:1 call_cycle:0 09:34:30 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:34:30 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:526 calls_made:1 call_cycle:0 09:34:30 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:34:30 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:526 calls_made:1 call_cycle:0 09:34:30 07 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:34:30 07 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:34:38 07 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:34:40 07 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:34:40 07 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:34:40 07 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:34:40 07 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:34:40 07 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:34:44 07 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0526lz 09:34:44 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0526lz.x00 09:34:44 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0526lz.x01 09:34:44 07 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0526lz.r in process_file_group 09:34:44 07 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260526.log 09:34:44 07 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:34:44 07 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0526dz 09:34:44 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0526dz.x00 09:34:44 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0526dz.x01 09:34:44 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0526dz.x02 09:34:44 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0526dz.x03 09:34:44 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0526dz.x04 09:34:44 07 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0526dz.r in process_file_group 09:34:45 07 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [526] 09:34:45 07 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [526] 09:34:45 07 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260526) for profiles 09:34:45 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 09:34:45 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/748) 748 to QC_BAD because CT out of water 09:34:45 07 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.068m) 09:34:45 07 Apr 2017 UTC: INFO: QC.py(365): Changed (5/748) 2 257 273 286 346 to QC_PROBABLY_BAD because raw temperature spikes 09:34:45 07 Apr 2017 UTC: INFO: QC.py(408): Changed (2/748) 273 346 to QC_PROBABLY_BAD because raw conductivity spikes 09:34:45 07 Apr 2017 UTC: INFO: QC.py(180): Changed (5/748) 2 257 273 286 346 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 09:34:45 07 Apr 2017 UTC: INFO: QC.py(180): Changed (1/748) 748 to QC_BAD because changed raw cond implies changed raw salinity 09:34:45 07 Apr 2017 UTC: INFO: QC.py(365): Changed (5/748) 2 257 273 286 346 to QC_INTERPOLATED because temperature spikes 09:34:45 07 Apr 2017 UTC: INFO: QC.py(408): Changed (2/748) 273 346 to QC_INTERPOLATED because conductivity spikes 09:34:45 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/748) 295:299 to QC_BAD because slow apogee CT flow 09:34:45 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/748) 1:6 to QC_BAD because prior to dive start 09:34:45 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/748) 746 747 to QC_BAD because end of climb 09:34:45 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/748) 1:6 295:299 746:748 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:34:45 07 Apr 2017 UTC: INFO: QC.py(180): Changed (14/748) 1:6 295:299 746:748 to QC_BAD because changed corrected salin implies changed speed 09:34:46 07 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:34:46 07 Apr 2017 UTC: INFO: QC.py(180): Changed (4/748) 257 273 286 346 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 09:34:46 07 Apr 2017 UTC: INFO: QC.py(180): Changed (4/748) 257 273 286 346 to QC_INTERPOLATED because changed corrected temp implies changed speed 09:34:46 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.32 cm/s 09:34:46 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.40 cm/s 09:34:46 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:34:46 07 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (208/748) 167:170 172:175 177:180 182:185 187:190 192:195 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:34:46 07 Apr 2017 UTC: INFO: QC.py(180): Changed (3/748) 2 286 346 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:34:46 07 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (208/748) 167:170 172:175 177:180 182:185 187:190 192:195 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 09:34:46 07 Apr 2017 UTC: INFO: QC.py(180): Changed (3/748) 2 286 346 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:34:46 07 Apr 2017 UTC: INFO: QC.py(180): Changed (14/748) 1:6 295:299 746:748 to QC_BAD because changed salinity implies changed optode oxygen 09:34:46 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:34:46 07 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:34:46 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 09:34:46 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 526: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.87% reduction 09:34:46 07 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.526 09:34:46 07 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:34:46 07 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:34:46 07 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:34:47 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 09:34:47 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 09:39:17 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 09:39:19 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 09:39:19 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 09:40:20 07 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:40:20 07 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:40:20 07 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:40:20 07 Apr 2017 UTC /home/sg626/p6260526.log /home/sg626/p6260526.eng /home/sg626/p6260526.asc /home/sg626/p6260526.pro /home/sg626/p6260526.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 09:40:20 07 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:40:20 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:40:20 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:40:20 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:40:20 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:40:20 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:40:20 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:40:20 07 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:40:20 07 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:40:20 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:40:20 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:40:20 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:40:20 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:40:20 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:40:20 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:40:20 07 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:40:20 07 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:40:20 07 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:40:20 07 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:40:20 07 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:40:20 07 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:40:20 07 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:40:20 07 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:40:20 07 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 09:40:20 07 Apr 2017 UTC 13:22:38 07 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 19012 13:22:38 07 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:25:49 07 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 19235 13:25:49 07 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:25:49 07 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:25:49 07 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:25:49 07 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:25:49 07 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170407032548 ] 13:25:49 07 Apr 2017 UTC: INFO: Base.py(1333): PID:19242 13:25:49 07 Apr 2017 UTC: INFO: Base.py(1375): Started processing 13:25:49 07 Apr 2017 UTC 13:25:49 07 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:25:51 07 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:25:51 07 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:25:51 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:25:51 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:527 calls_made:1 call_cycle:0 13:25:51 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:25:51 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:527 calls_made:1 call_cycle:0 13:25:51 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:25:51 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:527 calls_made:1 call_cycle:0 13:25:51 07 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:527 calls_made:1 call_cycle:0 2232.9820 -15800.2110 04/07/17 13:20:18 UTC) to sdrifter@soest.hawaii.edu 13:25:51 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:527 calls_made:1 call_cycle:0 13:25:51 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:25:51 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:527 calls_made:1 call_cycle:0 13:25:51 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:25:51 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:527 calls_made:1 call_cycle:0 13:25:51 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:25:51 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:527 calls_made:1 call_cycle:0 13:25:51 07 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:25:51 07 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:25:59 07 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:26:01 07 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:26:01 07 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:26:01 07 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:26:01 07 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:26:01 07 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:26:05 07 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0527lz 13:26:05 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0527lz.x00 13:26:05 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0527lz.x01 13:26:05 07 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0527lz.r in process_file_group 13:26:05 07 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260527.log 13:26:05 07 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:26:05 07 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0527dz 13:26:05 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0527dz.x00 13:26:05 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0527dz.x01 13:26:05 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0527dz.x02 13:26:05 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0527dz.x03 13:26:05 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0527dz.x04 13:26:05 07 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0527dz.r in process_file_group 13:26:06 07 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [527] 13:26:06 07 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [527] 13:26:06 07 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260527) for profiles 13:26:06 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:26:06 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/691) 689:691 to QC_BAD because CT out of water 13:26:06 07 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.168m) 13:26:06 07 Apr 2017 UTC: INFO: QC.py(365): Changed (12/691) 2 205 207 214 216 230 260 295 297 464 689 690 to QC_PROBABLY_BAD because raw temperature spikes 13:26:06 07 Apr 2017 UTC: INFO: QC.py(377): Changed (1/691) 689 to QC_BAD because raw salinity below bound 13:26:06 07 Apr 2017 UTC: INFO: QC.py(408): Changed (7/691) 205 207 214 230 295 297 306 to QC_PROBABLY_BAD because raw conductivity spikes 13:26:06 07 Apr 2017 UTC: INFO: QC.py(180): Changed (11/691) 2 205 207 214 216 230 260 295 297 464 690 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:26:06 07 Apr 2017 UTC: INFO: QC.py(180): Changed (1/691) 306 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 13:26:06 07 Apr 2017 UTC: INFO: QC.py(180): Changed (2/691) 690 691 to QC_BAD because changed raw cond implies changed raw salinity 13:26:06 07 Apr 2017 UTC: INFO: QC.py(365): Changed (12/691) 2 205 207 214 216 230 260 295 297 464 689 690 to QC_INTERPOLATED because temperature spikes 13:26:06 07 Apr 2017 UTC: INFO: QC.py(377): Changed (1/691) 689 to QC_BAD because salinity below bound 13:26:06 07 Apr 2017 UTC: INFO: QC.py(408): Changed (7/691) 205 207 214 230 295 297 306 to QC_INTERPOLATED because conductivity spikes 13:26:06 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/691) 258:262 to QC_BAD because slow apogee CT flow 13:26:06 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/691) 1:6 to QC_BAD because prior to dive start 13:26:06 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/691) 688 to QC_BAD because end of climb 13:26:06 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/691) 1:6 258:262 688:691 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:26:06 07 Apr 2017 UTC: INFO: QC.py(180): Changed (15/691) 1:6 258:262 688:691 to QC_BAD because changed corrected salin implies changed speed 13:26:07 07 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:26:07 07 Apr 2017 UTC: INFO: QC.py(180): Changed (8/691) 205 207 214 216 230 295 297 464 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 13:26:07 07 Apr 2017 UTC: INFO: QC.py(180): Changed (1/691) 306 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 13:26:07 07 Apr 2017 UTC: INFO: QC.py(180): Changed (8/691) 205 207 214 216 230 295 297 464 to QC_INTERPOLATED because changed corrected temp implies changed speed 13:26:07 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.69 cm/s 13:26:07 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.30 cm/s 13:26:07 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:26:07 07 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (202/691) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:26:07 07 Apr 2017 UTC: INFO: QC.py(180): Changed (5/691) 2 216 464 689 690 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:26:07 07 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (202/691) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:26:07 07 Apr 2017 UTC: INFO: QC.py(180): Changed (5/691) 2 216 464 689 690 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:26:07 07 Apr 2017 UTC: INFO: QC.py(180): Changed (15/691) 1:6 258:262 688:691 to QC_BAD because changed salinity implies changed optode oxygen 13:26:07 07 Apr 2017 UTC: INFO: QC.py(180): Changed (1/691) 306 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 13:26:07 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:26:07 07 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:26:07 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:26:07 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 527: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.17% reduction 13:26:07 07 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.527 13:26:07 07 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:26:07 07 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:26:07 07 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:26:08 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:26:08 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:30:38 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 13:30:40 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:30:40 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:31:41 07 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:31:41 07 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:31:41 07 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:31:41 07 Apr 2017 UTC /home/sg626/p6260527.log /home/sg626/p6260527.eng /home/sg626/p6260527.asc /home/sg626/p6260527.pro /home/sg626/p6260527.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:31:41 07 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:31:41 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:31:41 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:31:41 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:31:41 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:31:41 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:31:41 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:31:41 07 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:31:41 07 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:31:41 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:31:41 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:31:41 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:31:41 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:31:41 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:31:41 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:31:41 07 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:31:41 07 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:31:41 07 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:31:41 07 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:31:41 07 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:31:41 07 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:31:41 07 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:31:41 07 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:31:41 07 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 13:31:41 07 Apr 2017 UTC 17:26:23 07 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 32703 17:26:23 07 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:29:41 07 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 485 17:29:41 07 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:29:41 07 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:29:41 07 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:29:41 07 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:29:41 07 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170407072940 ] 17:29:41 07 Apr 2017 UTC: INFO: Base.py(1333): PID:493 17:29:41 07 Apr 2017 UTC: INFO: Base.py(1375): Started processing 17:29:41 07 Apr 2017 UTC 17:29:41 07 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:29:43 07 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:29:43 07 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:29:43 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:29:43 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:528 calls_made:1 call_cycle:0 17:29:43 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:29:43 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:528 calls_made:1 call_cycle:0 17:29:43 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:29:43 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:528 calls_made:1 call_cycle:0 17:29:43 07 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:528 calls_made:1 call_cycle:0 2233.5140 -15800.0940 04/07/17 17:24:00 UTC) to sdrifter@soest.hawaii.edu 17:29:43 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:528 calls_made:1 call_cycle:0 17:29:43 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:29:43 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:528 calls_made:1 call_cycle:0 17:29:43 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:29:43 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:528 calls_made:1 call_cycle:0 17:29:43 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:29:43 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:528 calls_made:1 call_cycle:0 17:29:43 07 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:29:43 07 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:29:51 07 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:29:53 07 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:29:53 07 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:29:53 07 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:29:53 07 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:29:53 07 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:29:57 07 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0528lz 17:29:57 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0528lz.x00 17:29:57 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0528lz.x01 17:29:57 07 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0528lz.r in process_file_group 17:29:57 07 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260528.log 17:29:57 07 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:29:57 07 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0528dz 17:29:57 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0528dz.x00 17:29:57 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0528dz.x01 17:29:57 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0528dz.x02 17:29:57 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0528dz.x03 17:29:57 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0528dz.x04 17:29:57 07 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0528dz.r in process_file_group 17:29:58 07 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [528] 17:29:58 07 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [528] 17:29:58 07 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260528) for profiles 17:29:58 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:29:58 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/717) 715 716 to QC_BAD because CT out of water 17:29:58 07 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.099m) 17:29:58 07 Apr 2017 UTC: INFO: QC.py(365): Changed (6/717) 2 225 226 254 282 716 to QC_PROBABLY_BAD because raw temperature spikes 17:29:58 07 Apr 2017 UTC: INFO: QC.py(408): Changed (6/717) 225 226 254 256 457 490 to QC_PROBABLY_BAD because raw conductivity spikes 17:29:58 07 Apr 2017 UTC: INFO: QC.py(180): Changed (6/717) 2 225 226 254 282 716 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:29:58 07 Apr 2017 UTC: INFO: QC.py(180): Changed (3/717) 256 457 490 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 17:29:58 07 Apr 2017 UTC: INFO: QC.py(180): Changed (2/717) 715 716 to QC_BAD because changed raw cond implies changed raw salinity 17:29:58 07 Apr 2017 UTC: INFO: QC.py(365): Changed (6/717) 2 225 226 254 282 716 to QC_INTERPOLATED because temperature spikes 17:29:58 07 Apr 2017 UTC: INFO: QC.py(408): Changed (6/717) 225 226 254 256 457 490 to QC_INTERPOLATED because conductivity spikes 17:29:58 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/717) 280:284 to QC_BAD because slow apogee CT flow 17:29:58 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/717) 1:6 to QC_BAD because prior to dive start 17:29:58 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/717) 717 to QC_BAD because end of climb 17:29:58 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/717) 1:6 280:284 715:717 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:29:58 07 Apr 2017 UTC: INFO: QC.py(180): Changed (14/717) 1:6 280:284 715:717 to QC_BAD because changed corrected salin implies changed speed 17:29:59 07 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:29:59 07 Apr 2017 UTC: INFO: QC.py(180): Changed (3/717) 225 226 254 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 17:29:59 07 Apr 2017 UTC: INFO: QC.py(180): Changed (3/717) 256 457 490 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 17:29:59 07 Apr 2017 UTC: INFO: QC.py(180): Changed (3/717) 225 226 254 to QC_INTERPOLATED because changed corrected temp implies changed speed 17:29:59 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.33 cm/s 17:29:59 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.30 cm/s 17:29:59 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:29:59 07 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (210/717) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:29:59 07 Apr 2017 UTC: INFO: QC.py(180): Changed (3/717) 2 226 716 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:29:59 07 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (210/717) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:29:59 07 Apr 2017 UTC: INFO: QC.py(180): Changed (3/717) 2 226 716 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:29:59 07 Apr 2017 UTC: INFO: QC.py(180): Changed (14/717) 1:6 280:284 715:717 to QC_BAD because changed salinity implies changed optode oxygen 17:29:59 07 Apr 2017 UTC: INFO: QC.py(180): Changed (3/717) 256 457 490 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 17:29:59 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:29:59 07 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:29:59 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:29:59 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 528: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.95% reduction 17:29:59 07 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.528 17:29:59 07 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:29:59 07 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:29:59 07 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:30:00 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:30:00 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:34:30 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 17:34:32 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:34:32 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:35:32 07 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:35:32 07 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:35:32 07 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:35:32 07 Apr 2017 UTC /home/sg626/p6260528.log /home/sg626/p6260528.eng /home/sg626/p6260528.asc /home/sg626/p6260528.pro /home/sg626/p6260528.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:35:32 07 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:35:32 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:35:32 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:35:32 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:35:32 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:35:32 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:35:32 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:35:32 07 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:35:32 07 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:35:32 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:35:32 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:35:32 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:35:32 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:35:32 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:35:32 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:35:32 07 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:35:32 07 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:35:32 07 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:35:32 07 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:35:32 07 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:35:32 07 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:35:32 07 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:35:32 07 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:35:32 07 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 17:35:32 07 Apr 2017 UTC 21:33:05 07 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 12007 21:33:05 07 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:37:36 07 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 12145 21:37:36 07 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:37:36 07 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:37:36 07 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:37:36 07 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:37:36 07 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170407113735 ] 21:37:36 07 Apr 2017 UTC: INFO: Base.py(1333): PID:12153 21:37:36 07 Apr 2017 UTC: INFO: Base.py(1375): Started processing 21:37:36 07 Apr 2017 UTC 21:37:36 07 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:37:37 07 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:37:37 07 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:37:37 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:37:37 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:529 calls_made:3 call_cycle:0 21:37:37 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:37:37 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:529 calls_made:3 call_cycle:0 21:37:37 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:37:37 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:529 calls_made:3 call_cycle:0 21:37:37 07 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:529 calls_made:3 call_cycle:0 2233.8850 -15759.9820 04/07/17 21:26:31 UTC) to sdrifter@soest.hawaii.edu 21:37:37 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:529 calls_made:3 call_cycle:0 21:37:37 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:37:37 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:529 calls_made:3 call_cycle:0 21:37:37 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:37:37 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:529 calls_made:3 call_cycle:0 21:37:37 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:37:37 07 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:529 calls_made:3 call_cycle:0 21:37:37 07 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:37:37 07 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:37:46 07 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:37:47 07 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:37:47 07 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:37:47 07 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:37:47 07 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:37:47 07 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:37:52 07 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0529lz 21:37:52 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0529lz.x00 21:37:52 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0529lz.x01 21:37:52 07 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0529lz.r in process_file_group 21:37:52 07 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260529.log 21:37:52 07 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:37:52 07 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0529dz 21:37:52 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0529dz.x00 21:37:52 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0529dz.x01 21:37:52 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0529dz.x02 21:37:52 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0529dz.x03 21:37:52 07 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0529dz.x04 21:37:52 07 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0529dz.r in process_file_group 21:37:52 07 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [529] 21:37:52 07 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [529] 21:37:52 07 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260529) for profiles 21:37:52 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:37:52 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/730) 728 730 to QC_BAD because CT out of water 21:37:52 07 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.078m) 21:37:52 07 Apr 2017 UTC: INFO: QC.py(365): Changed (6/730) 5 256 267 279 728 729 to QC_PROBABLY_BAD because raw temperature spikes 21:37:52 07 Apr 2017 UTC: INFO: QC.py(377): Changed (1/730) 730 to QC_BAD because raw salinity below bound 21:37:52 07 Apr 2017 UTC: INFO: QC.py(408): Changed (2/730) 256 297 to QC_PROBABLY_BAD because raw conductivity spikes 21:37:52 07 Apr 2017 UTC: INFO: QC.py(180): Changed (6/730) 5 256 267 279 728 729 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:37:52 07 Apr 2017 UTC: INFO: QC.py(180): Changed (1/730) 297 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 21:37:53 07 Apr 2017 UTC: INFO: QC.py(180): Changed (1/730) 728 to QC_BAD because changed raw cond implies changed raw salinity 21:37:53 07 Apr 2017 UTC: INFO: QC.py(365): Changed (6/730) 5 256 267 279 728 729 to QC_INTERPOLATED because temperature spikes 21:37:53 07 Apr 2017 UTC: INFO: QC.py(377): Changed (1/730) 730 to QC_BAD because salinity below bound 21:37:53 07 Apr 2017 UTC: INFO: QC.py(408): Changed (2/730) 256 297 to QC_INTERPOLATED because conductivity spikes 21:37:53 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/730) 265:269 to QC_BAD because slow apogee CT flow 21:37:53 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/730) 1:6 to QC_BAD because prior to dive start 21:37:53 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/730) 729 to QC_BAD because end of climb 21:37:53 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/730) 1:6 265:269 728:730 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:37:53 07 Apr 2017 UTC: INFO: QC.py(180): Changed (14/730) 1:6 265:269 728:730 to QC_BAD because changed corrected salin implies changed speed 21:37:53 07 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:37:53 07 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 529 interp_salinity data_points in_between 136 196 % suspect thermal-inertia points 143 21:37:53 07 Apr 2017 UTC: INFO: QC.py(180): Changed (2/730) 256 279 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 21:37:53 07 Apr 2017 UTC: INFO: QC.py(180): Changed (1/730) 297 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 21:37:53 07 Apr 2017 UTC: INFO: QC.py(180): Changed (2/730) 256 279 to QC_INTERPOLATED because changed corrected temp implies changed speed 21:37:53 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.81 cm/s 21:37:53 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.23 cm/s 21:37:53 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:37:53 07 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (205/730) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:37:53 07 Apr 2017 UTC: INFO: QC.py(180): Changed (4/730) 5 256 728 729 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:37:53 07 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (205/730) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:37:53 07 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/730) 724 to QC_BAD because bad aa4330 oyxgen 21:37:53 07 Apr 2017 UTC: INFO: QC.py(180): Changed (4/730) 5 256 728 729 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:37:53 07 Apr 2017 UTC: INFO: QC.py(180): Changed (14/730) 1:6 265:269 728:730 to QC_BAD because changed salinity implies changed optode oxygen 21:37:53 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:37:53 07 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:37:53 07 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:37:54 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 529: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.92% reduction 21:37:54 07 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.529 21:37:54 07 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:37:54 07 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:37:54 07 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:37:54 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:37:54 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 21:42:25 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 21:42:27 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 21:42:27 07 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 21:43:29 07 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:43:29 07 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:43:29 07 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:43:29 07 Apr 2017 UTC /home/sg626/p6260529.log /home/sg626/p6260529.eng /home/sg626/p6260529.asc /home/sg626/p6260529.pro /home/sg626/p6260529.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 21:43:29 07 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:43:29 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:43:29 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:43:29 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:43:29 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:43:29 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:43:29 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:43:29 07 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:43:29 07 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:43:29 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:43:29 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:43:29 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:43:29 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:43:29 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:43:29 07 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:43:29 07 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:43:29 07 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:43:29 07 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:43:29 07 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:43:29 07 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:43:29 07 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:43:29 07 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:43:29 07 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:43:29 07 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 21:43:29 07 Apr 2017 UTC 01:20:44 08 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 17963 01:20:44 08 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:22:35 08 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 18072 01:22:35 08 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:22:35 08 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:22:35 08 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:22:35 08 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:22:35 08 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170407152235 ] 01:22:35 08 Apr 2017 UTC: INFO: Base.py(1333): PID:18079 01:22:35 08 Apr 2017 UTC: INFO: Base.py(1375): Started processing 01:22:35 08 Apr 2017 UTC 01:22:35 08 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:22:37 08 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:22:37 08 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:22:37 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:22:37 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:530 calls_made:1 call_cycle:0 01:22:37 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:22:37 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:530 calls_made:1 call_cycle:0 01:22:37 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:22:37 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:530 calls_made:1 call_cycle:0 01:22:37 08 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:530 calls_made:1 call_cycle:0 2234.2760 -15759.7520 04/08/17 01:18:20 UTC) to sdrifter@soest.hawaii.edu 01:22:37 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:530 calls_made:1 call_cycle:0 01:22:37 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:22:37 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:530 calls_made:1 call_cycle:0 01:22:37 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:22:37 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:530 calls_made:1 call_cycle:0 01:22:37 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:22:37 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:530 calls_made:1 call_cycle:0 01:22:37 08 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:22:37 08 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:22:46 08 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:22:47 08 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:22:47 08 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:22:47 08 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:22:47 08 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:22:47 08 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:22:51 08 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 01:22:51 08 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 01:22:51 08 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 01:22:51 08 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.530 01:22:51 08 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:22:51 08 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:22:51 08 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:22:52 08 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:22:52 08 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:22:52 08 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:22:52 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:22:52 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:22:52 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:22:52 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:22:52 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:22:52 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:22:52 08 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:22:52 08 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:22:52 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:22:52 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:22:52 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:22:52 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:22:52 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:22:52 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:22:52 08 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:22:52 08 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:22:52 08 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:22:52 08 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:22:52 08 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:22:52 08 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:22:52 08 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:22:52 08 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:22:52 08 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 01:22:52 08 Apr 2017 UTC 01:24:34 08 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 18318 01:24:34 08 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:27:45 08 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 18445 01:27:45 08 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:27:45 08 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:27:45 08 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:27:45 08 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:27:45 08 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170407152744 ] 01:27:45 08 Apr 2017 UTC: INFO: Base.py(1333): PID:18452 01:27:45 08 Apr 2017 UTC: INFO: Base.py(1375): Started processing 01:27:45 08 Apr 2017 UTC 01:27:45 08 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:27:46 08 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:27:46 08 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:27:46 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:27:46 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:530 calls_made:2 call_cycle:0 01:27:46 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:27:46 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:530 calls_made:2 call_cycle:0 01:27:46 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:27:46 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:530 calls_made:2 call_cycle:0 01:27:46 08 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:530 calls_made:2 call_cycle:0 2234.2760 -15759.7520 04/08/17 01:18:20 UTC) to sdrifter@soest.hawaii.edu 01:27:46 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:530 calls_made:2 call_cycle:0 01:27:46 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:27:46 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:530 calls_made:2 call_cycle:0 01:27:46 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:27:46 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:530 calls_made:2 call_cycle:0 01:27:46 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:27:46 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:530 calls_made:2 call_cycle:0 01:27:46 08 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:27:46 08 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:27:55 08 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:27:56 08 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:27:56 08 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:27:56 08 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:27:56 08 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:27:56 08 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:28:01 08 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0530lz 01:28:01 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0530lz.x00 01:28:01 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0530lz.x01 01:28:01 08 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0530lz.r in process_file_group 01:28:01 08 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260530.log 01:28:01 08 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:28:01 08 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0530dz 01:28:01 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0530dz.x00 01:28:01 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0530dz.x01 01:28:01 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0530dz.x02 01:28:01 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0530dz.x03 01:28:01 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0530dz.x04 01:28:01 08 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0530dz.r in process_file_group 01:28:01 08 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [530] 01:28:01 08 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [530] 01:28:02 08 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260530) for profiles 01:28:02 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:28:02 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/683) 681 683 to QC_BAD because CT out of water 01:28:02 08 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.146m) 01:28:02 08 Apr 2017 UTC: INFO: QC.py(365): Changed (6/683) 2 253 254 275 276 682 to QC_PROBABLY_BAD because raw temperature spikes 01:28:02 08 Apr 2017 UTC: INFO: QC.py(377): Changed (3/683) 681:683 to QC_BAD because raw salinity below bound 01:28:02 08 Apr 2017 UTC: INFO: QC.py(408): Changed (5/683) 247 253 254 260 299 to QC_PROBABLY_BAD because raw conductivity spikes 01:28:02 08 Apr 2017 UTC: INFO: QC.py(180): Changed (5/683) 2 253 254 275 276 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:28:02 08 Apr 2017 UTC: INFO: QC.py(180): Changed (3/683) 247 260 299 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 01:28:02 08 Apr 2017 UTC: INFO: QC.py(365): Changed (6/683) 2 253 254 275 276 682 to QC_INTERPOLATED because temperature spikes 01:28:02 08 Apr 2017 UTC: INFO: QC.py(377): Changed (3/683) 681:683 to QC_BAD because salinity below bound 01:28:02 08 Apr 2017 UTC: INFO: QC.py(388): Changed (1/683) 682 to QC_BAD because bad salinity indicates conductivity issues 01:28:02 08 Apr 2017 UTC: INFO: QC.py(408): Changed (5/683) 247 253 254 260 299 to QC_INTERPOLATED because conductivity spikes 01:28:02 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/683) 265:269 to QC_BAD because slow apogee CT flow 01:28:02 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/683) 1:6 to QC_BAD because prior to dive start 01:28:02 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/683) 1:6 265:269 681:683 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:28:02 08 Apr 2017 UTC: INFO: QC.py(180): Changed (14/683) 1:6 265:269 681:683 to QC_BAD because changed corrected salin implies changed speed 01:28:03 08 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:28:03 08 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 530 interp_salinity data_points in_between 382 398 % suspect thermal-inertia points 393:396 01:28:03 08 Apr 2017 UTC: INFO: QC.py(180): Changed (4/683) 253 254 275 276 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 01:28:03 08 Apr 2017 UTC: INFO: QC.py(180): Changed (3/683) 247 260 299 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 01:28:03 08 Apr 2017 UTC: INFO: QC.py(180): Changed (4/683) 253 254 275 276 to QC_INTERPOLATED because changed corrected temp implies changed speed 01:28:03 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.23 cm/s 01:28:03 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.06 cm/s 01:28:03 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:28:03 08 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (192/683) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:28:03 08 Apr 2017 UTC: INFO: QC.py(180): Changed (3/683) 2 276 682 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 01:28:03 08 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (192/683) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 01:28:03 08 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (4/683) 678 680 682 683 to QC_BAD because bad aa4330 oyxgen 01:28:03 08 Apr 2017 UTC: INFO: QC.py(180): Changed (2/683) 2 276 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 01:28:03 08 Apr 2017 UTC: INFO: QC.py(180): Changed (12/683) 1:6 265:269 681 to QC_BAD because changed salinity implies changed optode oxygen 01:28:03 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:28:03 08 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:28:03 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:28:03 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 530: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.05% reduction 01:28:03 08 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.530 01:28:03 08 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:28:03 08 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:28:03 08 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:28:03 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:28:03 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 01:32:33 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 01:32:35 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 01:32:35 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 01:33:37 08 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:33:37 08 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:33:37 08 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:33:37 08 Apr 2017 UTC /home/sg626/p6260530.log /home/sg626/p6260530.eng /home/sg626/p6260530.asc /home/sg626/p6260530.pro /home/sg626/p6260530.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 01:33:37 08 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:33:37 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:33:37 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:33:37 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:33:37 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:33:37 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:33:37 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:33:37 08 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:33:37 08 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:33:37 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:33:37 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:33:37 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:33:37 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:33:37 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:33:37 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:33:37 08 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:33:37 08 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:33:37 08 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:33:37 08 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:33:37 08 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:33:37 08 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:33:37 08 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:33:37 08 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:33:37 08 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 01:33:37 08 Apr 2017 UTC 05:17:24 08 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 24693 05:17:24 08 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:20:44 08 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 24908 05:20:44 08 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:20:44 08 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:20:44 08 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:20:44 08 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:20:44 08 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170407192043 ] 05:20:44 08 Apr 2017 UTC: INFO: Base.py(1333): PID:24915 05:20:44 08 Apr 2017 UTC: INFO: Base.py(1375): Started processing 05:20:44 08 Apr 2017 UTC 05:20:44 08 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:20:45 08 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:20:45 08 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:20:45 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:20:45 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:531 calls_made:1 call_cycle:0 05:20:45 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:20:45 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:531 calls_made:1 call_cycle:0 05:20:45 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:20:45 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:531 calls_made:1 call_cycle:0 05:20:45 08 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:531 calls_made:1 call_cycle:0 2232.4290 -15800.7240 04/08/17 05:15:00 UTC) to sdrifter@soest.hawaii.edu 05:20:45 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:531 calls_made:1 call_cycle:0 05:20:45 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:20:45 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:531 calls_made:1 call_cycle:0 05:20:45 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:20:45 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:531 calls_made:1 call_cycle:0 05:20:45 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:20:45 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:531 calls_made:1 call_cycle:0 05:20:45 08 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:20:45 08 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:20:54 08 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:20:55 08 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:20:55 08 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:20:55 08 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:20:56 08 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:20:56 08 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:21:00 08 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0531lz 05:21:00 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0531lz.x00 05:21:00 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0531lz.x01 05:21:00 08 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0531lz.r in process_file_group 05:21:00 08 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260531.log 05:21:00 08 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:21:00 08 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0531dz 05:21:00 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0531dz.x00 05:21:00 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0531dz.x01 05:21:00 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0531dz.x02 05:21:00 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0531dz.x03 05:21:00 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0531dz.x04 05:21:00 08 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0531dz.r in process_file_group 05:21:00 08 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [531] 05:21:00 08 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [531] 05:21:00 08 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260531) for profiles 05:21:00 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:21:01 08 Apr 2017 UTC: INFO: QC.py(365): Changed (4/704) 3 4 267 703 to QC_PROBABLY_BAD because raw temperature spikes 05:21:01 08 Apr 2017 UTC: INFO: QC.py(408): Changed (1/704) 703 to QC_PROBABLY_BAD because raw conductivity spikes 05:21:01 08 Apr 2017 UTC: INFO: QC.py(180): Changed (4/704) 3 4 267 703 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:21:01 08 Apr 2017 UTC: INFO: QC.py(365): Changed (4/704) 3 4 267 703 to QC_INTERPOLATED because temperature spikes 05:21:01 08 Apr 2017 UTC: INFO: QC.py(408): Changed (1/704) 703 to QC_INTERPOLATED because conductivity spikes 05:21:01 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/704) 265:269 to QC_BAD because slow apogee CT flow 05:21:01 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/704) 1:6 to QC_BAD because prior to dive start 05:21:01 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (3/704) 702:704 to QC_BAD because end of climb 05:21:01 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/704) 1:6 265:269 702:704 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:21:01 08 Apr 2017 UTC: INFO: QC.py(180): Changed (14/704) 1:6 265:269 702:704 to QC_BAD because changed corrected salin implies changed speed 05:21:01 08 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:21:01 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.22 cm/s 05:21:01 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.14 cm/s 05:21:01 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:21:01 08 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (200/704) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:21:01 08 Apr 2017 UTC: INFO: QC.py(180): Changed (3/704) 3 4 703 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:21:01 08 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (200/704) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:21:01 08 Apr 2017 UTC: INFO: QC.py(180): Changed (3/704) 3 4 703 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:21:01 08 Apr 2017 UTC: INFO: QC.py(180): Changed (14/704) 1:6 265:269 702:704 to QC_BAD because changed salinity implies changed optode oxygen 05:21:01 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:21:01 08 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:21:01 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 05:21:02 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 531: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.99% reduction 05:21:02 08 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.531 05:21:02 08 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:21:02 08 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:21:02 08 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:21:02 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 05:21:02 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 05:25:36 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 05:25:38 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 05:25:38 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 05:26:40 08 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:26:40 08 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:26:40 08 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:26:40 08 Apr 2017 UTC /home/sg626/p6260531.log /home/sg626/p6260531.eng /home/sg626/p6260531.asc /home/sg626/p6260531.pro /home/sg626/p6260531.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 05:26:40 08 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:26:40 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:26:40 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:26:40 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:26:40 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:26:40 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:26:40 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:26:40 08 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:26:40 08 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:26:40 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:26:40 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:26:40 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:26:40 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:26:40 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:26:40 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:26:40 08 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:26:40 08 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:26:40 08 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:26:40 08 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:26:40 08 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:26:40 08 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:26:40 08 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:26:40 08 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:26:40 08 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 05:26:40 08 Apr 2017 UTC 09:23:23 08 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 31394 09:23:24 08 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:26:36 08 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 31525 09:26:36 08 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:26:36 08 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:26:36 08 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:26:36 08 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:26:36 08 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170407232636 ] 09:26:36 08 Apr 2017 UTC: INFO: Base.py(1333): PID:31532 09:26:36 08 Apr 2017 UTC: INFO: Base.py(1375): Started processing 09:26:36 08 Apr 2017 UTC 09:26:36 08 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:26:38 08 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:26:38 08 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:26:38 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:26:38 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:532 calls_made:1 call_cycle:0 09:26:38 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:26:38 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:532 calls_made:1 call_cycle:0 09:26:38 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:26:38 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:532 calls_made:1 call_cycle:0 09:26:38 08 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:532 calls_made:1 call_cycle:0 2232.9890 -15800.4270 04/08/17 09:21:01 UTC) to sdrifter@soest.hawaii.edu 09:26:38 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:532 calls_made:1 call_cycle:0 09:26:38 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:26:38 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:532 calls_made:1 call_cycle:0 09:26:38 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:26:38 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:532 calls_made:1 call_cycle:0 09:26:38 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:26:38 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:532 calls_made:1 call_cycle:0 09:26:38 08 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:26:38 08 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:26:46 08 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:26:48 08 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:26:48 08 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:26:48 08 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:26:48 08 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:26:48 08 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:26:53 08 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0532lz 09:26:53 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0532lz.x00 09:26:53 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0532lz.x01 09:26:53 08 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0532lz.r in process_file_group 09:26:53 08 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260532.log 09:26:53 08 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:26:53 08 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0532dz 09:26:53 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0532dz.x00 09:26:53 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0532dz.x01 09:26:53 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0532dz.x02 09:26:53 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0532dz.x03 09:26:53 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0532dz.x04 09:26:53 08 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0532dz.r in process_file_group 09:26:53 08 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [532] 09:26:53 08 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [532] 09:26:53 08 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260532) for profiles 09:26:53 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 09:26:53 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/758) 757 to QC_BAD because CT out of water 09:26:53 08 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.010m) 09:26:53 08 Apr 2017 UTC: INFO: QC.py(365): Changed (6/758) 2 4 257 269 286 757 to QC_PROBABLY_BAD because raw temperature spikes 09:26:53 08 Apr 2017 UTC: INFO: QC.py(408): Changed (4/758) 107 257 269 286 to QC_PROBABLY_BAD because raw conductivity spikes 09:26:53 08 Apr 2017 UTC: INFO: QC.py(180): Changed (6/758) 2 4 257 269 286 757 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 09:26:53 08 Apr 2017 UTC: INFO: QC.py(180): Changed (1/758) 107 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 09:26:53 08 Apr 2017 UTC: INFO: QC.py(180): Changed (1/758) 757 to QC_BAD because changed raw cond implies changed raw salinity 09:26:53 08 Apr 2017 UTC: INFO: QC.py(365): Changed (6/758) 2 4 257 269 286 757 to QC_INTERPOLATED because temperature spikes 09:26:53 08 Apr 2017 UTC: INFO: QC.py(408): Changed (4/758) 107 257 269 286 to QC_INTERPOLATED because conductivity spikes 09:26:53 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/758) 278:282 to QC_BAD because slow apogee CT flow 09:26:53 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/758) 1:6 to QC_BAD because prior to dive start 09:26:53 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/758) 756 758 to QC_BAD because end of climb 09:26:53 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/758) 1:6 278:282 756:758 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:26:53 08 Apr 2017 UTC: INFO: QC.py(180): Changed (14/758) 1:6 278:282 756:758 to QC_BAD because changed corrected salin implies changed speed 09:26:54 08 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:26:54 08 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 532 interp_salinity data_points in_between 396 415 % suspect thermal-inertia points 413 09:26:54 08 Apr 2017 UTC: INFO: QC.py(180): Changed (3/758) 257 269 286 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 09:26:54 08 Apr 2017 UTC: INFO: QC.py(180): Changed (1/758) 107 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 09:26:54 08 Apr 2017 UTC: INFO: QC.py(180): Changed (3/758) 257 269 286 to QC_INTERPOLATED because changed corrected temp implies changed speed 09:26:54 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.45 cm/s 09:26:54 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.24 cm/s 09:26:54 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:26:54 08 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (206/758) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:26:54 08 Apr 2017 UTC: INFO: QC.py(180): Changed (4/758) 2 4 286 757 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:26:54 08 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (206/758) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 09:26:54 08 Apr 2017 UTC: INFO: QC.py(180): Changed (4/758) 2 4 286 757 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:26:54 08 Apr 2017 UTC: INFO: QC.py(180): Changed (14/758) 1:6 278:282 756:758 to QC_BAD because changed salinity implies changed optode oxygen 09:26:54 08 Apr 2017 UTC: INFO: QC.py(180): Changed (1/758) 107 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 09:26:54 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:26:54 08 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:26:54 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 09:26:55 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 532: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.85% reduction 09:26:55 08 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.532 09:26:55 08 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:26:55 08 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:26:55 08 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:26:55 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 09:26:55 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 09:31:28 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 09:31:30 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 09:31:30 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 09:32:31 08 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:32:31 08 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:32:31 08 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:32:31 08 Apr 2017 UTC /home/sg626/p6260532.log /home/sg626/p6260532.eng /home/sg626/p6260532.asc /home/sg626/p6260532.pro /home/sg626/p6260532.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 09:32:31 08 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:32:31 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:32:31 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:32:31 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:32:31 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:32:31 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:32:31 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:32:31 08 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:32:31 08 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:32:31 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:32:31 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:32:31 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:32:31 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:32:31 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:32:31 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:32:31 08 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:32:31 08 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:32:31 08 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:32:31 08 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:32:31 08 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:32:31 08 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:32:31 08 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:32:31 08 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:32:31 08 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 09:32:31 08 Apr 2017 UTC 13:15:51 08 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 5249 13:15:51 08 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:19:02 08 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 5375 13:19:02 08 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:19:02 08 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:19:02 08 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:19:02 08 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:19:02 08 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170408031902 ] 13:19:02 08 Apr 2017 UTC: INFO: Base.py(1333): PID:5382 13:19:02 08 Apr 2017 UTC: INFO: Base.py(1375): Started processing 13:19:02 08 Apr 2017 UTC 13:19:02 08 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:19:04 08 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:19:04 08 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:19:04 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:19:04 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:533 calls_made:1 call_cycle:0 13:19:04 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:19:04 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:533 calls_made:1 call_cycle:0 13:19:04 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:19:04 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:533 calls_made:1 call_cycle:0 13:19:04 08 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:533 calls_made:1 call_cycle:0 2233.3520 -15800.0080 04/08/17 13:13:31 UTC) to sdrifter@soest.hawaii.edu 13:19:04 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:533 calls_made:1 call_cycle:0 13:19:04 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:19:04 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:533 calls_made:1 call_cycle:0 13:19:04 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:19:04 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:533 calls_made:1 call_cycle:0 13:19:04 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:19:04 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:533 calls_made:1 call_cycle:0 13:19:04 08 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:19:04 08 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:19:12 08 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:19:14 08 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:19:14 08 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:19:14 08 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:19:14 08 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:19:14 08 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:19:18 08 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0533lz 13:19:18 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0533lz.x00 13:19:18 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0533lz.x01 13:19:18 08 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0533lz.r in process_file_group 13:19:18 08 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260533.log 13:19:18 08 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:19:18 08 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0533dz 13:19:18 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0533dz.x00 13:19:18 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0533dz.x01 13:19:18 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0533dz.x02 13:19:18 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0533dz.x03 13:19:18 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0533dz.x04 13:19:18 08 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0533dz.r in process_file_group 13:19:19 08 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [533] 13:19:19 08 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [533] 13:19:19 08 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260533) for profiles 13:19:19 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:19:19 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/684) 682:684 to QC_BAD because CT out of water 13:19:19 08 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.072m) 13:19:19 08 Apr 2017 UTC: INFO: QC.py(365): Changed (5/684) 251 258 265 439 478 to QC_PROBABLY_BAD because raw temperature spikes 13:19:19 08 Apr 2017 UTC: INFO: QC.py(408): Changed (5/684) 251 265 439 440 478 to QC_PROBABLY_BAD because raw conductivity spikes 13:19:19 08 Apr 2017 UTC: INFO: QC.py(180): Changed (5/684) 251 258 265 439 478 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:19:19 08 Apr 2017 UTC: INFO: QC.py(180): Changed (1/684) 440 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 13:19:19 08 Apr 2017 UTC: INFO: QC.py(180): Changed (3/684) 682:684 to QC_BAD because changed raw cond implies changed raw salinity 13:19:19 08 Apr 2017 UTC: INFO: QC.py(365): Changed (5/684) 251 258 265 439 478 to QC_INTERPOLATED because temperature spikes 13:19:19 08 Apr 2017 UTC: INFO: QC.py(408): Changed (5/684) 251 265 439 440 478 to QC_INTERPOLATED because conductivity spikes 13:19:19 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/684) 257:261 to QC_BAD because slow apogee CT flow 13:19:19 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/684) 1:6 to QC_BAD because prior to dive start 13:19:19 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/684) 1:6 257:261 682:684 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:19:19 08 Apr 2017 UTC: INFO: QC.py(180): Changed (14/684) 1:6 257:261 682:684 to QC_BAD because changed corrected salin implies changed speed 13:19:20 08 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:19:20 08 Apr 2017 UTC: INFO: QC.py(180): Changed (4/684) 251 265 439 478 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 13:19:20 08 Apr 2017 UTC: INFO: QC.py(180): Changed (1/684) 440 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 13:19:20 08 Apr 2017 UTC: INFO: QC.py(180): Changed (4/684) 251 265 439 478 to QC_INTERPOLATED because changed corrected temp implies changed speed 13:19:20 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.99 cm/s 13:19:20 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.09 cm/s 13:19:20 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:19:20 08 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (199/684) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:19:20 08 Apr 2017 UTC: INFO: QC.py(180): Changed (3/684) 251 439 478 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:19:20 08 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (199/684) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:19:20 08 Apr 2017 UTC: INFO: QC.py(180): Changed (3/684) 251 439 478 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:19:20 08 Apr 2017 UTC: INFO: QC.py(180): Changed (14/684) 1:6 257:261 682:684 to QC_BAD because changed salinity implies changed optode oxygen 13:19:20 08 Apr 2017 UTC: INFO: QC.py(180): Changed (1/684) 440 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 13:19:20 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:19:20 08 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:19:20 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:19:20 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 533: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.05% reduction 13:19:20 08 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.533 13:19:20 08 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:19:20 08 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:19:20 08 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:19:21 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:19:21 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:23:56 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 13:23:58 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:23:58 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:25:02 08 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:25:02 08 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:25:02 08 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:25:02 08 Apr 2017 UTC /home/sg626/p6260533.log /home/sg626/p6260533.eng /home/sg626/p6260533.asc /home/sg626/p6260533.pro /home/sg626/p6260533.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:25:02 08 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:25:02 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:25:02 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:25:02 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:25:02 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:25:02 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:25:02 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:25:02 08 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:25:02 08 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:25:02 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:25:02 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:25:02 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:25:02 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:25:02 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:25:02 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:25:02 08 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:25:02 08 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:25:02 08 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:25:02 08 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:25:02 08 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:25:02 08 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:25:02 08 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:25:02 08 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:25:02 08 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 13:25:02 08 Apr 2017 UTC 17:16:51 08 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 11726 17:16:51 08 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:20:09 08 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 11939 17:20:09 08 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:20:09 08 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:20:09 08 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:20:09 08 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:20:09 08 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170408072009 ] 17:20:09 08 Apr 2017 UTC: INFO: Base.py(1333): PID:11947 17:20:09 08 Apr 2017 UTC: INFO: Base.py(1375): Started processing 17:20:09 08 Apr 2017 UTC 17:20:09 08 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:20:11 08 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:20:11 08 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:20:11 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:20:11 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:534 calls_made:1 call_cycle:0 17:20:11 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:20:11 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:534 calls_made:1 call_cycle:0 17:20:11 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:20:11 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:534 calls_made:1 call_cycle:0 17:20:11 08 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:534 calls_made:1 call_cycle:0 2234.1290 -15800.5080 04/08/17 17:14:31 UTC) to sdrifter@soest.hawaii.edu 17:20:11 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:534 calls_made:1 call_cycle:0 17:20:11 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:20:11 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:534 calls_made:1 call_cycle:0 17:20:11 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:20:11 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:534 calls_made:1 call_cycle:0 17:20:11 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:20:11 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:534 calls_made:1 call_cycle:0 17:20:11 08 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:20:11 08 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:20:19 08 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:20:21 08 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:20:21 08 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:20:21 08 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:20:21 08 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:20:21 08 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:20:26 08 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0534lz 17:20:26 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0534lz.x00 17:20:26 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0534lz.x01 17:20:26 08 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0534lz.r in process_file_group 17:20:26 08 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260534.log 17:20:26 08 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:20:26 08 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0534dz 17:20:26 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0534dz.x00 17:20:26 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0534dz.x01 17:20:26 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0534dz.x02 17:20:26 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0534dz.x03 17:20:26 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0534dz.x04 17:20:26 08 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0534dz.r in process_file_group 17:20:26 08 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [534] 17:20:26 08 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [534] 17:20:26 08 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260534) for profiles 17:20:26 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:20:26 08 Apr 2017 UTC: INFO: QC.py(365): Changed (4/719) 4 249 270 275 to QC_PROBABLY_BAD because raw temperature spikes 17:20:26 08 Apr 2017 UTC: INFO: QC.py(408): Changed (3/719) 234 270 275 to QC_PROBABLY_BAD because raw conductivity spikes 17:20:26 08 Apr 2017 UTC: INFO: QC.py(180): Changed (4/719) 4 249 270 275 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:20:26 08 Apr 2017 UTC: INFO: QC.py(180): Changed (1/719) 234 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 17:20:26 08 Apr 2017 UTC: INFO: QC.py(365): Changed (4/719) 4 249 270 275 to QC_INTERPOLATED because temperature spikes 17:20:26 08 Apr 2017 UTC: INFO: QC.py(408): Changed (3/719) 234 270 275 to QC_INTERPOLATED because conductivity spikes 17:20:27 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/719) 262:266 to QC_BAD because slow apogee CT flow 17:20:27 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/719) 1:6 to QC_BAD because prior to dive start 17:20:27 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/719) 718 719 to QC_BAD because end of climb 17:20:27 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/719) 1:6 262:266 718 719 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:20:27 08 Apr 2017 UTC: INFO: QC.py(180): Changed (13/719) 1:6 262:266 718 719 to QC_BAD because changed corrected salin implies changed speed 17:20:27 08 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:20:27 08 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 534 interp_salinity data_points in_between 369 406 % suspect thermal-inertia points 404 17:20:27 08 Apr 2017 UTC: INFO: QC.py(180): Changed (3/719) 249 270 275 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 17:20:27 08 Apr 2017 UTC: INFO: QC.py(180): Changed (1/719) 234 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 17:20:27 08 Apr 2017 UTC: INFO: QC.py(180): Changed (3/719) 249 270 275 to QC_INTERPOLATED because changed corrected temp implies changed speed 17:20:27 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.38 cm/s 17:20:27 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.08 cm/s 17:20:27 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:20:27 08 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (208/719) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:20:27 08 Apr 2017 UTC: INFO: QC.py(180): Changed (1/719) 4 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:20:27 08 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (208/719) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:20:27 08 Apr 2017 UTC: INFO: QC.py(180): Changed (1/719) 4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:20:27 08 Apr 2017 UTC: INFO: QC.py(180): Changed (13/719) 1:6 262:266 718 719 to QC_BAD because changed salinity implies changed optode oxygen 17:20:27 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:20:27 08 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:20:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:20:28 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 534: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.81% reduction 17:20:28 08 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.534 17:20:28 08 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:20:28 08 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:20:28 08 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:20:28 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:20:28 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:25:01 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 17:25:02 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:25:02 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:26:05 08 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:26:05 08 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:26:05 08 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:26:05 08 Apr 2017 UTC /home/sg626/p6260534.log /home/sg626/p6260534.eng /home/sg626/p6260534.asc /home/sg626/p6260534.pro /home/sg626/p6260534.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:26:05 08 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:26:05 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:26:05 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:26:05 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:26:05 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:26:05 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:26:05 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:26:05 08 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:26:05 08 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:26:05 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:26:05 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:26:05 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:26:05 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:26:05 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:26:05 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:26:05 08 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:26:05 08 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:26:05 08 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:26:05 08 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:26:05 08 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:26:05 08 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:26:05 08 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:26:05 08 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:26:05 08 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 17:26:05 08 Apr 2017 UTC 21:18:54 08 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 19757 21:18:54 08 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:22:09 08 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 20031 21:22:09 08 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:22:09 08 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:22:09 08 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:22:09 08 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:22:09 08 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170408112208 ] 21:22:09 08 Apr 2017 UTC: INFO: Base.py(1333): PID:20038 21:22:09 08 Apr 2017 UTC: INFO: Base.py(1375): Started processing 21:22:09 08 Apr 2017 UTC 21:22:09 08 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:22:11 08 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:22:11 08 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:22:11 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:22:11 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:535 calls_made:3 call_cycle:0 21:22:11 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:22:11 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:535 calls_made:3 call_cycle:0 21:22:11 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:22:11 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:535 calls_made:3 call_cycle:0 21:22:11 08 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:535 calls_made:3 call_cycle:0 2232.7630 -15759.5310 04/08/17 21:12:46 UTC) to sdrifter@soest.hawaii.edu 21:22:11 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:535 calls_made:3 call_cycle:0 21:22:11 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:22:11 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:535 calls_made:3 call_cycle:0 21:22:11 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:22:11 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:535 calls_made:3 call_cycle:0 21:22:11 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:22:11 08 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:535 calls_made:3 call_cycle:0 21:22:11 08 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:22:11 08 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:22:19 08 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:22:21 08 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:22:21 08 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:22:21 08 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:22:21 08 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:22:21 08 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:22:25 08 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0535lz 21:22:25 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0535lz.x00 21:22:25 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0535lz.x01 21:22:25 08 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0535lz.r in process_file_group 21:22:25 08 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260535.log 21:22:25 08 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:22:25 08 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0535dz 21:22:25 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0535dz.x00 21:22:25 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0535dz.x01 21:22:25 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0535dz.x02 21:22:25 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0535dz.x03 21:22:25 08 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0535dz.x04 21:22:25 08 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0535dz.r in process_file_group 21:22:26 08 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [535] 21:22:26 08 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [535] 21:22:26 08 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260535) for profiles 21:22:26 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:22:26 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/721) 720 to QC_BAD because CT out of water 21:22:26 08 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.122m) 21:22:26 08 Apr 2017 UTC: INFO: QC.py(365): Changed (3/721) 2 3 720 to QC_PROBABLY_BAD because raw temperature spikes 21:22:26 08 Apr 2017 UTC: INFO: QC.py(180): Changed (3/721) 2 3 720 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:22:26 08 Apr 2017 UTC: INFO: QC.py(180): Changed (1/721) 720 to QC_BAD because changed raw cond implies changed raw salinity 21:22:26 08 Apr 2017 UTC: INFO: QC.py(365): Changed (3/721) 2 3 720 to QC_INTERPOLATED because temperature spikes 21:22:26 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/721) 273:277 to QC_BAD because slow apogee CT flow 21:22:26 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/721) 1:6 to QC_BAD because prior to dive start 21:22:26 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/721) 719 721 to QC_BAD because end of climb 21:22:26 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/721) 1:6 273:277 719:721 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:22:26 08 Apr 2017 UTC: INFO: QC.py(180): Changed (14/721) 1:6 273:277 719:721 to QC_BAD because changed corrected salin implies changed speed 21:22:27 08 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:22:27 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.03 cm/s 21:22:27 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.25 cm/s 21:22:27 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:22:27 08 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (205/721) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:22:27 08 Apr 2017 UTC: INFO: QC.py(180): Changed (3/721) 2 3 720 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:22:27 08 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (205/721) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:22:27 08 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/721) 718 to QC_BAD because bad aa4330 oyxgen 21:22:27 08 Apr 2017 UTC: INFO: QC.py(180): Changed (3/721) 2 3 720 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:22:27 08 Apr 2017 UTC: INFO: QC.py(180): Changed (14/721) 1:6 273:277 719:721 to QC_BAD because changed salinity implies changed optode oxygen 21:22:27 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:22:27 08 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:22:27 08 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:22:27 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 535: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.94% reduction 21:22:27 08 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.535 21:22:27 08 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:22:27 08 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:22:27 08 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:22:28 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:22:28 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 21:27:01 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 21:27:03 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 21:27:03 08 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 21:28:06 08 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:28:06 08 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:28:06 08 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:28:06 08 Apr 2017 UTC /home/sg626/p6260535.log /home/sg626/p6260535.eng /home/sg626/p6260535.asc /home/sg626/p6260535.pro /home/sg626/p6260535.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 21:28:06 08 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:28:06 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:28:06 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:28:06 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:28:06 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:28:06 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:28:06 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:28:06 08 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:28:06 08 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:28:06 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:28:06 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:28:06 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:28:06 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:28:06 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:28:06 08 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:28:06 08 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:28:06 08 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:28:06 08 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:28:06 08 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:28:06 08 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:28:06 08 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:28:06 08 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:28:06 08 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:28:06 08 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 21:28:06 08 Apr 2017 UTC 01:18:18 09 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 30476 01:18:18 09 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:21:39 09 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 30753 01:21:39 09 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:21:39 09 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:21:39 09 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:21:39 09 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:21:39 09 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170408152138 ] 01:21:39 09 Apr 2017 UTC: INFO: Base.py(1333): PID:30760 01:21:39 09 Apr 2017 UTC: INFO: Base.py(1375): Started processing 01:21:39 09 Apr 2017 UTC 01:21:39 09 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:21:41 09 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:21:41 09 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:21:41 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:21:41 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:536 calls_made:2 call_cycle:0 01:21:41 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:21:41 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:536 calls_made:2 call_cycle:0 01:21:41 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:21:41 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:536 calls_made:2 call_cycle:0 01:21:41 09 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:536 calls_made:2 call_cycle:0 2233.1660 -15800.4280 04/09/17 01:13:31 UTC) to sdrifter@soest.hawaii.edu 01:21:41 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:536 calls_made:2 call_cycle:0 01:21:41 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:21:41 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:536 calls_made:2 call_cycle:0 01:21:41 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:21:41 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:536 calls_made:2 call_cycle:0 01:21:41 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:21:41 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:536 calls_made:2 call_cycle:0 01:21:41 09 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:21:41 09 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:21:50 09 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:21:51 09 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:21:51 09 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:21:51 09 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:21:51 09 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:21:51 09 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:21:55 09 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0536lz 01:21:55 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0536lz.x00 01:21:55 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0536lz.x01 01:21:55 09 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0536lz.r in process_file_group 01:21:55 09 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260536.log 01:21:55 09 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:21:55 09 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0536dz 01:21:55 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0536dz.x00 01:21:55 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0536dz.x01 01:21:55 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0536dz.x02 01:21:55 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0536dz.x03 01:21:55 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0536dz.x04 01:21:55 09 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0536dz.r in process_file_group 01:21:56 09 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [536] 01:21:56 09 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [536] 01:21:56 09 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260536) for profiles 01:21:56 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:21:56 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/708) 707 708 to QC_BAD because CT out of water 01:21:56 09 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.044m) 01:21:56 09 Apr 2017 UTC: INFO: QC.py(365): Changed (5/708) 5 112 266 271 419 to QC_PROBABLY_BAD because raw temperature spikes 01:21:56 09 Apr 2017 UTC: INFO: QC.py(377): Changed (1/708) 708 to QC_BAD because raw salinity below bound 01:21:56 09 Apr 2017 UTC: INFO: QC.py(408): Changed (3/708) 112 235 419 to QC_PROBABLY_BAD because raw conductivity spikes 01:21:56 09 Apr 2017 UTC: INFO: QC.py(180): Changed (5/708) 5 112 266 271 419 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:21:56 09 Apr 2017 UTC: INFO: QC.py(180): Changed (1/708) 235 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 01:21:56 09 Apr 2017 UTC: INFO: QC.py(180): Changed (1/708) 707 to QC_BAD because changed raw cond implies changed raw salinity 01:21:56 09 Apr 2017 UTC: INFO: QC.py(365): Changed (5/708) 5 112 266 271 419 to QC_INTERPOLATED because temperature spikes 01:21:56 09 Apr 2017 UTC: INFO: QC.py(377): Changed (1/708) 708 to QC_BAD because salinity below bound 01:21:56 09 Apr 2017 UTC: INFO: QC.py(408): Changed (3/708) 112 235 419 to QC_INTERPOLATED because conductivity spikes 01:21:56 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/708) 264:268 to QC_BAD because slow apogee CT flow 01:21:56 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/708) 1:6 to QC_BAD because prior to dive start 01:21:56 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/708) 1:6 264:268 707 708 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:21:56 09 Apr 2017 UTC: INFO: QC.py(180): Changed (13/708) 1:6 264:268 707 708 to QC_BAD because changed corrected salin implies changed speed 01:21:57 09 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:21:57 09 Apr 2017 UTC: INFO: QC.py(180): Changed (3/708) 112 271 419 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 01:21:57 09 Apr 2017 UTC: INFO: QC.py(180): Changed (1/708) 235 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 01:21:57 09 Apr 2017 UTC: INFO: QC.py(180): Changed (3/708) 112 271 419 to QC_INTERPOLATED because changed corrected temp implies changed speed 01:21:57 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.13 cm/s 01:21:57 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.36 cm/s 01:21:57 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:21:57 09 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (204/708) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:21:57 09 Apr 2017 UTC: INFO: QC.py(180): Changed (5/708) 5 112 266 271 419 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 01:21:57 09 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (204/708) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 01:21:57 09 Apr 2017 UTC: INFO: QC.py(180): Changed (5/708) 5 112 266 271 419 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 01:21:57 09 Apr 2017 UTC: INFO: QC.py(180): Changed (13/708) 1:6 264:268 707 708 to QC_BAD because changed salinity implies changed optode oxygen 01:21:57 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:21:57 09 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:21:57 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:21:57 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 536: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.84% reduction 01:21:57 09 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.536 01:21:57 09 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:21:57 09 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:21:57 09 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:21:58 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:21:58 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 01:26:33 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 01:26:35 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 01:26:35 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 01:27:38 09 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:27:38 09 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:27:38 09 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:27:38 09 Apr 2017 UTC /home/sg626/p6260536.log /home/sg626/p6260536.eng /home/sg626/p6260536.asc /home/sg626/p6260536.pro /home/sg626/p6260536.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 01:27:38 09 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:27:38 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:27:38 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:27:38 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:27:38 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:27:38 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:27:38 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:27:38 09 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:27:38 09 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:27:38 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:27:38 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:27:38 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:27:38 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:27:38 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:27:38 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:27:38 09 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:27:38 09 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:27:38 09 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:27:38 09 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:27:38 09 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:27:38 09 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:27:38 09 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:27:38 09 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:27:38 09 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 01:27:38 09 Apr 2017 UTC 05:13:22 09 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 7078 05:13:22 09 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:16:37 09 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 7202 05:16:37 09 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:16:37 09 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:16:37 09 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:16:37 09 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:16:37 09 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170408191636 ] 05:16:37 09 Apr 2017 UTC: INFO: Base.py(1333): PID:7209 05:16:37 09 Apr 2017 UTC: INFO: Base.py(1375): Started processing 05:16:37 09 Apr 2017 UTC 05:16:37 09 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:16:38 09 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:16:38 09 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:16:38 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:16:38 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:537 calls_made:1 call_cycle:0 05:16:38 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:16:38 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:537 calls_made:1 call_cycle:0 05:16:38 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:16:38 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:537 calls_made:1 call_cycle:0 05:16:38 09 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:537 calls_made:1 call_cycle:0 2233.6350 -15800.1880 04/09/17 05:11:00 UTC) to sdrifter@soest.hawaii.edu 05:16:39 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:537 calls_made:1 call_cycle:0 05:16:39 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:16:39 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:537 calls_made:1 call_cycle:0 05:16:39 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:16:39 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:537 calls_made:1 call_cycle:0 05:16:39 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:16:39 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:537 calls_made:1 call_cycle:0 05:16:39 09 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:16:39 09 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:16:47 09 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:16:49 09 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:16:49 09 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:16:49 09 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:16:49 09 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:16:49 09 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:16:53 09 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0537lz 05:16:53 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0537lz.x00 05:16:53 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0537lz.x01 05:16:53 09 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0537lz.r in process_file_group 05:16:53 09 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260537.log 05:16:53 09 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:16:53 09 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0537dz 05:16:53 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0537dz.x00 05:16:53 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0537dz.x01 05:16:53 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0537dz.x02 05:16:53 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0537dz.x03 05:16:53 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0537dz.x04 05:16:53 09 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0537dz.r in process_file_group 05:16:54 09 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [537] 05:16:54 09 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [537] 05:16:54 09 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260537) for profiles 05:16:54 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:16:54 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/713) 712 713 to QC_BAD because CT out of water 05:16:54 09 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.105m) 05:16:54 09 Apr 2017 UTC: INFO: QC.py(365): Changed (12/713) 2:5 258 259 261 265 269:271 426 to QC_PROBABLY_BAD because raw temperature spikes 05:16:54 09 Apr 2017 UTC: INFO: QC.py(377): Changed (1/713) 713 to QC_BAD because raw salinity below bound 05:16:54 09 Apr 2017 UTC: INFO: QC.py(408): Changed (7/713) 258 259 261 264 268 269 426 to QC_PROBABLY_BAD because raw conductivity spikes 05:16:54 09 Apr 2017 UTC: INFO: QC.py(180): Changed (12/713) 2:5 258 259 261 265 269:271 426 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:16:54 09 Apr 2017 UTC: INFO: QC.py(180): Changed (2/713) 264 268 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 05:16:54 09 Apr 2017 UTC: INFO: QC.py(180): Changed (1/713) 712 to QC_BAD because changed raw cond implies changed raw salinity 05:16:54 09 Apr 2017 UTC: INFO: QC.py(365): Changed (12/713) 2:5 258 259 261 265 269:271 426 to QC_INTERPOLATED because temperature spikes 05:16:54 09 Apr 2017 UTC: INFO: QC.py(377): Changed (1/713) 713 to QC_BAD because salinity below bound 05:16:54 09 Apr 2017 UTC: INFO: QC.py(408): Changed (7/713) 258 259 261 264 268 269 426 to QC_INTERPOLATED because conductivity spikes 05:16:54 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/713) 263:267 to QC_BAD because slow apogee CT flow 05:16:54 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/713) 1:6 to QC_BAD because prior to dive start 05:16:54 09 Apr 2017 UTC: INFO: QC.py(488): Changed (2/713) 268 269 to QC_PROBABLY_BAD because bad interpolation anchors 05:16:54 09 Apr 2017 UTC: INFO: QC.py(489): SUGGESTION: 537 bad_conductivity data_points in_between 266 269 % bad interpolation anchors 05:16:54 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/713) 1:6 263:267 712 713 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:16:54 09 Apr 2017 UTC: INFO: QC.py(180): Changed (13/713) 1:6 263:267 712 713 to QC_BAD because changed corrected salin implies changed speed 05:16:55 09 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:16:55 09 Apr 2017 UTC: INFO: QC.py(180): Changed (7/713) 258 259 261 269:271 426 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 05:16:55 09 Apr 2017 UTC: INFO: QC.py(180): Changed (2/713) 268 269 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 05:16:55 09 Apr 2017 UTC: INFO: QC.py(180): Changed (7/713) 258 259 261 269:271 426 to QC_INTERPOLATED because changed corrected temp implies changed speed 05:16:55 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.58 cm/s 05:16:55 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.94 cm/s 05:16:55 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:16:55 09 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (200/713) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:16:55 09 Apr 2017 UTC: INFO: QC.py(180): Changed (7/713) 2:5 261 271 426 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:16:55 09 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (200/713) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:16:55 09 Apr 2017 UTC: INFO: QC.py(180): Changed (7/713) 2:5 261 271 426 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:16:55 09 Apr 2017 UTC: INFO: QC.py(180): Changed (13/713) 1:6 263:267 712 713 to QC_BAD because changed salinity implies changed optode oxygen 05:16:55 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:16:55 09 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:16:55 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 05:16:55 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 537: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.82% reduction 05:16:55 09 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.537 05:16:55 09 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:16:55 09 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:16:55 09 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:16:56 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 05:16:56 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 05:21:30 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 05:21:32 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 05:21:32 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 05:22:35 09 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:22:35 09 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:22:35 09 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:22:35 09 Apr 2017 UTC /home/sg626/p6260537.log /home/sg626/p6260537.eng /home/sg626/p6260537.asc /home/sg626/p6260537.pro /home/sg626/p6260537.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 05:22:35 09 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:22:35 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:22:35 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:22:35 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:22:35 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:22:35 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:22:35 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:22:35 09 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:22:35 09 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:22:35 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:22:35 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:22:35 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:22:35 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:22:35 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:22:35 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:22:35 09 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:22:35 09 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:22:35 09 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:22:35 09 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:22:35 09 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:22:35 09 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:22:35 09 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:22:35 09 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:22:35 09 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 05:22:35 09 Apr 2017 UTC 09:07:51 09 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 12978 09:07:51 09 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:11:02 09 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 13633 09:11:02 09 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:11:02 09 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:11:02 09 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:11:02 09 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:11:02 09 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170408231102 ] 09:11:02 09 Apr 2017 UTC: INFO: Base.py(1333): PID:13640 09:11:02 09 Apr 2017 UTC: INFO: Base.py(1375): Started processing 09:11:02 09 Apr 2017 UTC 09:11:02 09 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:11:04 09 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:11:04 09 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:11:04 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:11:04 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:538 calls_made:1 call_cycle:0 09:11:04 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:11:04 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:538 calls_made:1 call_cycle:0 09:11:04 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:11:04 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:538 calls_made:1 call_cycle:0 09:11:04 09 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:538 calls_made:1 call_cycle:0 2233.7350 -15800.0840 04/09/17 09:05:31 UTC) to sdrifter@soest.hawaii.edu 09:11:04 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:538 calls_made:1 call_cycle:0 09:11:04 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:11:04 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:538 calls_made:1 call_cycle:0 09:11:04 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:11:04 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:538 calls_made:1 call_cycle:0 09:11:04 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:11:04 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:538 calls_made:1 call_cycle:0 09:11:04 09 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:11:04 09 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:11:12 09 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:11:14 09 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:11:14 09 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:11:14 09 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:11:14 09 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:11:14 09 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:11:19 09 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0538lz 09:11:19 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0538lz.x00 09:11:19 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0538lz.x01 09:11:19 09 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0538lz.r in process_file_group 09:11:19 09 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260538.log 09:11:19 09 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:11:19 09 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0538dz 09:11:19 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0538dz.x00 09:11:19 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0538dz.x01 09:11:19 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0538dz.x02 09:11:19 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0538dz.x03 09:11:19 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0538dz.x04 09:11:19 09 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0538dz.r in process_file_group 09:11:19 09 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [538] 09:11:19 09 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [538] 09:11:19 09 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260538) for profiles 09:11:19 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 09:11:19 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/691) 689 691 to QC_BAD because CT out of water 09:11:19 09 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.110m) 09:11:19 09 Apr 2017 UTC: INFO: QC.py(365): Changed (8/691) 4 250 251 266 274 276 281 282 to QC_PROBABLY_BAD because raw temperature spikes 09:11:19 09 Apr 2017 UTC: INFO: QC.py(377): Changed (1/691) 691 to QC_BAD because raw salinity below bound 09:11:19 09 Apr 2017 UTC: INFO: QC.py(408): Changed (5/691) 250 251 276 281 282 to QC_PROBABLY_BAD because raw conductivity spikes 09:11:19 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/691) 690 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 09:11:19 09 Apr 2017 UTC: INFO: QC.py(180): Changed (8/691) 4 250 251 266 274 276 281 282 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 09:11:20 09 Apr 2017 UTC: INFO: QC.py(180): Changed (2/691) 689 690 to QC_BAD because changed raw cond implies changed raw salinity 09:11:20 09 Apr 2017 UTC: INFO: QC.py(365): Changed (8/691) 4 250 251 266 274 276 281 282 to QC_INTERPOLATED because temperature spikes 09:11:20 09 Apr 2017 UTC: INFO: QC.py(377): Changed (1/691) 691 to QC_BAD because salinity below bound 09:11:20 09 Apr 2017 UTC: INFO: QC.py(408): Changed (5/691) 250 251 276 281 282 to QC_INTERPOLATED because conductivity spikes 09:11:20 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/691) 690 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 09:11:20 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/691) 264:268 to QC_BAD because slow apogee CT flow 09:11:20 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/691) 1:6 to QC_BAD because prior to dive start 09:11:20 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/691) 688 to QC_BAD because end of climb 09:11:20 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/691) 1:6 264:268 688:691 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:11:20 09 Apr 2017 UTC: INFO: QC.py(180): Changed (15/691) 1:6 264:268 688:691 to QC_BAD because changed corrected salin implies changed speed 09:11:20 09 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:11:20 09 Apr 2017 UTC: INFO: QC.py(180): Changed (6/691) 250 251 274 276 281 282 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 09:11:20 09 Apr 2017 UTC: INFO: QC.py(180): Changed (6/691) 250 251 274 276 281 282 to QC_INTERPOLATED because changed corrected temp implies changed speed 09:11:20 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.59 cm/s 09:11:20 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.12 cm/s 09:11:20 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:11:20 09 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (203/691) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:11:20 09 Apr 2017 UTC: INFO: QC.py(180): Changed (5/691) 4 251 266 276 281 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:11:20 09 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (203/691) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 09:11:20 09 Apr 2017 UTC: INFO: QC.py(180): Changed (5/691) 4 251 266 276 281 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:11:20 09 Apr 2017 UTC: INFO: QC.py(180): Changed (15/691) 1:6 264:268 688:691 to QC_BAD because changed salinity implies changed optode oxygen 09:11:20 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:11:20 09 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:11:20 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 09:11:21 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 538: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.17% reduction 09:11:21 09 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.538 09:11:21 09 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:11:21 09 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:11:21 09 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:11:21 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 09:11:21 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 09:15:57 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 09:15:59 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 09:15:59 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 09:17:02 09 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:17:02 09 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:17:02 09 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:17:02 09 Apr 2017 UTC /home/sg626/p6260538.log /home/sg626/p6260538.eng /home/sg626/p6260538.asc /home/sg626/p6260538.pro /home/sg626/p6260538.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 09:17:02 09 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:17:02 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:17:02 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:17:02 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:17:02 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:17:02 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:17:02 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:17:02 09 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:17:02 09 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:17:02 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:17:02 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:17:02 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:17:02 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:17:02 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:17:02 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:17:02 09 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:17:02 09 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:17:02 09 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:17:02 09 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:17:02 09 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:17:02 09 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:17:02 09 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:17:02 09 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:17:02 09 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 09:17:02 09 Apr 2017 UTC 13:05:55 09 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 20779 13:05:55 09 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:09:09 09 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 20910 13:09:09 09 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:09:09 09 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:09:09 09 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:09:09 09 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:09:09 09 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170409030908 ] 13:09:09 09 Apr 2017 UTC: INFO: Base.py(1333): PID:20917 13:09:09 09 Apr 2017 UTC: INFO: Base.py(1375): Started processing 13:09:09 09 Apr 2017 UTC 13:09:09 09 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:09:11 09 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:09:11 09 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:09:11 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:09:11 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:539 calls_made:1 call_cycle:0 13:09:11 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:09:11 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:539 calls_made:1 call_cycle:0 13:09:11 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:09:11 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:539 calls_made:1 call_cycle:0 13:09:11 09 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:539 calls_made:1 call_cycle:0 2233.8520 -15759.6950 04/09/17 13:03:33 UTC) to sdrifter@soest.hawaii.edu 13:09:11 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:539 calls_made:1 call_cycle:0 13:09:11 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:09:11 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:539 calls_made:1 call_cycle:0 13:09:11 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:09:11 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:539 calls_made:1 call_cycle:0 13:09:11 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:09:11 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:539 calls_made:1 call_cycle:0 13:09:11 09 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:09:11 09 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:09:19 09 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:09:21 09 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:09:21 09 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:09:21 09 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:09:21 09 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:09:21 09 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:09:25 09 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0539lz 13:09:25 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0539lz.x00 13:09:25 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0539lz.x01 13:09:25 09 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0539lz.r in process_file_group 13:09:25 09 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260539.log 13:09:25 09 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:09:25 09 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0539dz 13:09:25 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0539dz.x00 13:09:25 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0539dz.x01 13:09:25 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0539dz.x02 13:09:25 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0539dz.x03 13:09:25 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0539dz.x04 13:09:25 09 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0539dz.r in process_file_group 13:09:26 09 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [539] 13:09:26 09 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [539] 13:09:26 09 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260539) for profiles 13:09:26 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:09:26 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/729) 727:729 to QC_BAD because CT out of water 13:09:26 09 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.094m) 13:09:26 09 Apr 2017 UTC: INFO: QC.py(365): Changed (5/729) 2 3 272 320 321 to QC_PROBABLY_BAD because raw temperature spikes 13:09:26 09 Apr 2017 UTC: INFO: QC.py(377): Changed (3/729) 727:729 to QC_BAD because raw salinity below bound 13:09:26 09 Apr 2017 UTC: INFO: QC.py(408): Changed (2/729) 320 321 to QC_PROBABLY_BAD because raw conductivity spikes 13:09:26 09 Apr 2017 UTC: INFO: QC.py(180): Changed (5/729) 2 3 272 320 321 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:09:26 09 Apr 2017 UTC: INFO: QC.py(365): Changed (5/729) 2 3 272 320 321 to QC_INTERPOLATED because temperature spikes 13:09:26 09 Apr 2017 UTC: INFO: QC.py(377): Changed (3/729) 727:729 to QC_BAD because salinity below bound 13:09:26 09 Apr 2017 UTC: INFO: QC.py(408): Changed (2/729) 320 321 to QC_INTERPOLATED because conductivity spikes 13:09:26 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/729) 270:274 to QC_BAD because slow apogee CT flow 13:09:26 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/729) 1:6 to QC_BAD because prior to dive start 13:09:26 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/729) 1:6 270:274 727:729 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:09:26 09 Apr 2017 UTC: INFO: QC.py(180): Changed (14/729) 1:6 270:274 727:729 to QC_BAD because changed corrected salin implies changed speed 13:09:27 09 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:09:27 09 Apr 2017 UTC: INFO: QC.py(180): Changed (2/729) 320 321 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 13:09:27 09 Apr 2017 UTC: INFO: QC.py(180): Changed (2/729) 320 321 to QC_INTERPOLATED because changed corrected temp implies changed speed 13:09:27 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.28 cm/s 13:09:27 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.22 cm/s 13:09:27 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:09:27 09 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (203/729) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:09:27 09 Apr 2017 UTC: INFO: QC.py(180): Changed (3/729) 2 3 321 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:09:27 09 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (203/729) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:09:27 09 Apr 2017 UTC: INFO: QC.py(180): Changed (3/729) 2 3 321 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:09:27 09 Apr 2017 UTC: INFO: QC.py(180): Changed (14/729) 1:6 270:274 727:729 to QC_BAD because changed salinity implies changed optode oxygen 13:09:27 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:09:27 09 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:09:27 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:09:27 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 539: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.92% reduction 13:09:28 09 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.539 13:09:28 09 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:09:28 09 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:09:28 09 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:09:28 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:09:28 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:14:08 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 13:14:10 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:14:10 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:15:14 09 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:15:14 09 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:15:14 09 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:15:14 09 Apr 2017 UTC /home/sg626/p6260539.log /home/sg626/p6260539.eng /home/sg626/p6260539.asc /home/sg626/p6260539.pro /home/sg626/p6260539.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:15:14 09 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:15:14 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:15:14 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:15:14 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:15:14 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:15:14 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:15:14 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:15:14 09 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:15:14 09 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:15:14 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:15:14 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:15:14 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:15:14 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:15:14 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:15:14 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:15:14 09 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:15:14 09 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:15:14 09 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:15:14 09 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:15:14 09 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:15:14 09 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:15:14 09 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:15:14 09 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:15:14 09 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 13:15:14 09 Apr 2017 UTC 16:58:02 09 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 26692 16:58:02 09 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:01:10 09 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 27073 17:01:10 09 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:01:10 09 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:01:10 09 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:01:10 09 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:01:10 09 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170409070109 ] 17:01:10 09 Apr 2017 UTC: INFO: Base.py(1333): PID:27080 17:01:10 09 Apr 2017 UTC: INFO: Base.py(1375): Started processing 17:01:10 09 Apr 2017 UTC 17:01:10 09 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:01:11 09 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:01:11 09 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:01:11 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:01:11 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:540 calls_made:1 call_cycle:0 17:01:11 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:01:11 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:540 calls_made:1 call_cycle:0 17:01:11 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:01:11 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:540 calls_made:1 call_cycle:0 17:01:11 09 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:540 calls_made:1 call_cycle:0 2233.6920 -15801.3330 04/09/17 16:55:30 UTC) to sdrifter@soest.hawaii.edu 17:01:11 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:540 calls_made:1 call_cycle:0 17:01:11 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:01:11 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:540 calls_made:1 call_cycle:0 17:01:11 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:01:11 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:540 calls_made:1 call_cycle:0 17:01:11 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:01:11 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:540 calls_made:1 call_cycle:0 17:01:11 09 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:01:11 09 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:01:20 09 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:01:22 09 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:01:22 09 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:01:22 09 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:01:22 09 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:01:22 09 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:01:26 09 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0540lz 17:01:26 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0540lz.x00 17:01:26 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0540lz.x01 17:01:26 09 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0540lz.r in process_file_group 17:01:26 09 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260540.log 17:01:26 09 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:01:26 09 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0540dz 17:01:26 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0540dz.x00 17:01:26 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0540dz.x01 17:01:26 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0540dz.x02 17:01:26 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0540dz.x03 17:01:26 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0540dz.x04 17:01:26 09 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0540dz.r in process_file_group 17:01:27 09 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [540] 17:01:27 09 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [540] 17:01:27 09 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260540) for profiles 17:01:27 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:01:27 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/703) 701:703 to QC_BAD because CT out of water 17:01:27 09 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.057m) 17:01:27 09 Apr 2017 UTC: INFO: QC.py(365): Changed (3/703) 254 255 407 to QC_PROBABLY_BAD because raw temperature spikes 17:01:27 09 Apr 2017 UTC: INFO: QC.py(377): Changed (3/703) 701:703 to QC_BAD because raw salinity below bound 17:01:27 09 Apr 2017 UTC: INFO: QC.py(408): Changed (2/703) 254 407 to QC_PROBABLY_BAD because raw conductivity spikes 17:01:27 09 Apr 2017 UTC: INFO: QC.py(180): Changed (3/703) 254 255 407 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:01:27 09 Apr 2017 UTC: INFO: QC.py(365): Changed (3/703) 254 255 407 to QC_INTERPOLATED because temperature spikes 17:01:27 09 Apr 2017 UTC: INFO: QC.py(377): Changed (3/703) 701:703 to QC_BAD because salinity below bound 17:01:27 09 Apr 2017 UTC: INFO: QC.py(408): Changed (2/703) 254 407 to QC_INTERPOLATED because conductivity spikes 17:01:27 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/703) 252:256 to QC_BAD because slow apogee CT flow 17:01:27 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/703) 1:6 to QC_BAD because prior to dive start 17:01:27 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/703) 700 to QC_BAD because end of climb 17:01:27 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/703) 1:6 252:256 700:703 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:01:27 09 Apr 2017 UTC: INFO: QC.py(180): Changed (15/703) 1:6 252:256 700:703 to QC_BAD because changed corrected salin implies changed speed 17:01:28 09 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:01:28 09 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 540 interp_salinity data_points in_between 341 383 % suspect thermal-inertia points 382 17:01:28 09 Apr 2017 UTC: INFO: QC.py(180): Changed (1/703) 407 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 17:01:28 09 Apr 2017 UTC: INFO: QC.py(180): Changed (1/703) 407 to QC_INTERPOLATED because changed corrected temp implies changed speed 17:01:28 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.17 cm/s 17:01:28 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.13 cm/s 17:01:28 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:01:28 09 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (195/703) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:01:28 09 Apr 2017 UTC: INFO: QC.py(180): Changed (1/703) 407 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:01:28 09 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (195/703) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:01:28 09 Apr 2017 UTC: INFO: QC.py(180): Changed (1/703) 407 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:01:28 09 Apr 2017 UTC: INFO: QC.py(180): Changed (15/703) 1:6 252:256 700:703 to QC_BAD because changed salinity implies changed optode oxygen 17:01:28 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:01:28 09 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:01:28 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:01:28 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 540: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.13% reduction 17:01:28 09 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.540 17:01:28 09 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:01:28 09 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:01:28 09 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:01:29 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:01:29 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:06:03 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 17:06:05 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:06:05 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:07:09 09 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:07:09 09 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:07:09 09 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:07:09 09 Apr 2017 UTC /home/sg626/p6260540.log /home/sg626/p6260540.eng /home/sg626/p6260540.asc /home/sg626/p6260540.pro /home/sg626/p6260540.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:07:09 09 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:07:09 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:07:09 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:07:09 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:07:09 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:07:09 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:07:09 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:07:09 09 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:07:09 09 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:07:09 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:07:09 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:07:09 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:07:09 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:07:09 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:07:09 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:07:09 09 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:07:09 09 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:07:09 09 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:07:09 09 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:07:09 09 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:07:09 09 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:07:09 09 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:07:09 09 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:07:09 09 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 17:07:09 09 Apr 2017 UTC 20:50:16 09 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 781 20:50:16 09 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:53:30 09 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 911 20:53:30 09 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:53:30 09 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:53:30 09 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:53:30 09 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:53:30 09 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170409105329 ] 20:53:30 09 Apr 2017 UTC: INFO: Base.py(1333): PID:919 20:53:30 09 Apr 2017 UTC: INFO: Base.py(1375): Started processing 20:53:30 09 Apr 2017 UTC 20:53:30 09 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:53:31 09 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:53:31 09 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:53:31 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:53:31 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:541 calls_made:1 call_cycle:0 20:53:31 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:53:31 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:541 calls_made:1 call_cycle:0 20:53:31 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:53:31 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:541 calls_made:1 call_cycle:0 20:53:31 09 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:541 calls_made:1 call_cycle:0 2232.7530 -15800.4900 04/09/17 20:47:54 UTC) to sdrifter@soest.hawaii.edu 20:53:46 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:541 calls_made:1 call_cycle:0 20:53:46 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:53:46 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:541 calls_made:1 call_cycle:0 20:53:46 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:53:46 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:541 calls_made:1 call_cycle:0 20:53:46 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:53:46 09 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:541 calls_made:1 call_cycle:0 20:53:46 09 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:53:46 09 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:53:55 09 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:53:57 09 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:53:57 09 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:53:57 09 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:53:57 09 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:53:57 09 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:54:01 09 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0541lz 20:54:01 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0541lz.x00 20:54:01 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0541lz.x01 20:54:01 09 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0541lz.r in process_file_group 20:54:01 09 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260541.log 20:54:01 09 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:54:01 09 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0541dz 20:54:01 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0541dz.x00 20:54:01 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0541dz.x01 20:54:01 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0541dz.x02 20:54:01 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0541dz.x03 20:54:01 09 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0541dz.x04 20:54:01 09 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0541dz.r in process_file_group 20:54:02 09 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [541] 20:54:02 09 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [541] 20:54:02 09 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260541) for profiles 20:54:02 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 20:54:02 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/706) 704:706 to QC_BAD because CT out of water 20:54:02 09 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.193m) 20:54:02 09 Apr 2017 UTC: INFO: QC.py(365): Changed (2/706) 277 705 to QC_PROBABLY_BAD because raw temperature spikes 20:54:02 09 Apr 2017 UTC: INFO: QC.py(377): Changed (1/706) 706 to QC_BAD because raw salinity below bound 20:54:02 09 Apr 2017 UTC: INFO: QC.py(408): Changed (1/706) 431 to QC_PROBABLY_BAD because raw conductivity spikes 20:54:02 09 Apr 2017 UTC: INFO: QC.py(180): Changed (2/706) 277 705 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 20:54:02 09 Apr 2017 UTC: INFO: QC.py(180): Changed (1/706) 431 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 20:54:02 09 Apr 2017 UTC: INFO: QC.py(180): Changed (2/706) 704 705 to QC_BAD because changed raw cond implies changed raw salinity 20:54:02 09 Apr 2017 UTC: INFO: QC.py(365): Changed (2/706) 277 705 to QC_INTERPOLATED because temperature spikes 20:54:02 09 Apr 2017 UTC: INFO: QC.py(377): Changed (1/706) 706 to QC_BAD because salinity below bound 20:54:02 09 Apr 2017 UTC: INFO: QC.py(408): Changed (1/706) 431 to QC_INTERPOLATED because conductivity spikes 20:54:02 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/706) 275:279 to QC_BAD because slow apogee CT flow 20:54:02 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/706) 1:6 to QC_BAD because prior to dive start 20:54:02 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/706) 1:6 275:279 704:706 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 20:54:02 09 Apr 2017 UTC: INFO: QC.py(180): Changed (14/706) 1:6 275:279 704:706 to QC_BAD because changed corrected salin implies changed speed 20:54:03 09 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 20:54:03 09 Apr 2017 UTC: INFO: QC.py(180): Changed (1/706) 431 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 20:54:03 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.09 cm/s 20:54:03 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.90 cm/s 20:54:03 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 20:54:03 09 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (199/706) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 20:54:03 09 Apr 2017 UTC: INFO: QC.py(180): Changed (1/706) 705 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 20:54:03 09 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (199/706) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 20:54:03 09 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/706) 701 702 to QC_BAD because bad aa4330 oyxgen 20:54:03 09 Apr 2017 UTC: INFO: QC.py(180): Changed (1/706) 705 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 20:54:03 09 Apr 2017 UTC: INFO: QC.py(180): Changed (14/706) 1:6 275:279 704:706 to QC_BAD because changed salinity implies changed optode oxygen 20:54:03 09 Apr 2017 UTC: INFO: QC.py(180): Changed (1/706) 431 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 20:54:03 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 20:54:03 09 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 20:54:03 09 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 20:54:03 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 541: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.98% reduction 20:54:03 09 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.541 20:54:03 09 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:54:03 09 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:54:03 09 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:54:04 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 20:54:04 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 20:58:41 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 20:58:43 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 20:58:43 09 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 20:59:47 09 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:59:47 09 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:59:47 09 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:59:47 09 Apr 2017 UTC /home/sg626/p6260541.log /home/sg626/p6260541.eng /home/sg626/p6260541.asc /home/sg626/p6260541.pro /home/sg626/p6260541.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 20:59:47 09 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:59:47 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:59:47 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:59:47 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:59:47 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:59:47 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:59:47 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:59:47 09 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:59:47 09 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:59:47 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:59:47 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:59:47 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:59:47 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:59:47 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:59:47 09 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:59:47 09 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:59:47 09 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:59:47 09 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:59:47 09 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:59:47 09 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:59:47 09 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:59:47 09 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:59:47 09 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:59:47 09 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 20:59:47 09 Apr 2017 UTC 00:44:23 10 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 6747 00:44:23 10 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:47:43 10 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 6877 00:47:43 10 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:47:43 10 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:47:43 10 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:47:43 10 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:47:43 10 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170409144742 ] 00:47:43 10 Apr 2017 UTC: INFO: Base.py(1333): PID:6884 00:47:43 10 Apr 2017 UTC: INFO: Base.py(1375): Started processing 00:47:43 10 Apr 2017 UTC 00:47:43 10 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:47:45 10 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:47:45 10 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:47:45 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:47:45 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:542 calls_made:1 call_cycle:0 00:47:45 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:47:45 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:542 calls_made:1 call_cycle:0 00:47:45 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:47:45 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:542 calls_made:1 call_cycle:0 00:47:45 10 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:542 calls_made:1 call_cycle:0 2232.8930 -15800.1950 04/10/17 00:41:30 UTC) to sdrifter@soest.hawaii.edu 00:47:45 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:542 calls_made:1 call_cycle:0 00:47:45 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:47:45 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:542 calls_made:1 call_cycle:0 00:47:45 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:47:45 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:542 calls_made:1 call_cycle:0 00:47:45 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:47:45 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:542 calls_made:1 call_cycle:0 00:47:45 10 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:47:45 10 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:47:53 10 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:47:55 10 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:47:55 10 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:47:55 10 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:47:55 10 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:47:55 10 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:48:00 10 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0542lz 00:48:00 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0542lz.x00 00:48:00 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0542lz.x01 00:48:00 10 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0542lz.r in process_file_group 00:48:00 10 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260542.log 00:48:00 10 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:48:00 10 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0542dz 00:48:00 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0542dz.x00 00:48:00 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0542dz.x01 00:48:00 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0542dz.x02 00:48:00 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0542dz.x03 00:48:00 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0542dz.x04 00:48:00 10 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0542dz.r in process_file_group 00:48:00 10 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [542] 00:48:00 10 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [542] 00:48:00 10 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260542) for profiles 00:48:00 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 00:48:00 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/688) 686:688 to QC_BAD because CT out of water 00:48:00 10 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.170m) 00:48:00 10 Apr 2017 UTC: INFO: QC.py(365): Changed (3/688) 5 686 687 to QC_PROBABLY_BAD because raw temperature spikes 00:48:00 10 Apr 2017 UTC: INFO: QC.py(377): Changed (2/688) 687 688 to QC_BAD because raw salinity below bound 00:48:00 10 Apr 2017 UTC: INFO: QC.py(408): Changed (4/688) 2 118 226 412 to QC_PROBABLY_BAD because raw conductivity spikes 00:48:00 10 Apr 2017 UTC: INFO: QC.py(180): Changed (2/688) 5 686 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:48:00 10 Apr 2017 UTC: INFO: QC.py(180): Changed (4/688) 2 118 226 412 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 00:48:00 10 Apr 2017 UTC: INFO: QC.py(180): Changed (1/688) 686 to QC_BAD because changed raw cond implies changed raw salinity 00:48:00 10 Apr 2017 UTC: INFO: QC.py(365): Changed (3/688) 5 686 687 to QC_INTERPOLATED because temperature spikes 00:48:00 10 Apr 2017 UTC: INFO: QC.py(377): Changed (2/688) 687 688 to QC_BAD because salinity below bound 00:48:00 10 Apr 2017 UTC: INFO: QC.py(408): Changed (4/688) 2 118 226 412 to QC_INTERPOLATED because conductivity spikes 00:48:00 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/688) 259:263 to QC_BAD because slow apogee CT flow 00:48:00 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/688) 1:6 to QC_BAD because prior to dive start 00:48:00 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/688) 685 to QC_BAD because end of climb 00:48:00 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/688) 1:6 259:263 685:688 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:48:00 10 Apr 2017 UTC: INFO: QC.py(180): Changed (15/688) 1:6 259:263 685:688 to QC_BAD because changed corrected salin implies changed speed 00:48:01 10 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:48:01 10 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 542 interp_salinity data_points in_between 354 401 % suspect thermal-inertia points 391 392 00:48:01 10 Apr 2017 UTC: INFO: QC.py(180): Changed (3/688) 118 226 412 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 00:48:01 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.20 cm/s 00:48:01 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.75 cm/s 00:48:01 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:48:01 10 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (203/688) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:48:01 10 Apr 2017 UTC: INFO: QC.py(180): Changed (3/688) 5 686 687 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:48:01 10 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (203/688) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 00:48:01 10 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/688) 686 to QC_BAD because bad aa4330 oyxgen 00:48:01 10 Apr 2017 UTC: INFO: QC.py(180): Changed (2/688) 5 687 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:48:01 10 Apr 2017 UTC: INFO: QC.py(180): Changed (14/688) 1:6 259:263 685 687 688 to QC_BAD because changed salinity implies changed optode oxygen 00:48:01 10 Apr 2017 UTC: INFO: QC.py(180): Changed (3/688) 118 226 412 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 00:48:01 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:48:01 10 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:48:01 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 00:48:01 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 542: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.18% reduction 00:48:02 10 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.542 00:48:02 10 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:48:02 10 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:48:02 10 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:48:02 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 00:48:02 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 00:52:41 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 00:52:43 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 00:52:43 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 00:53:47 10 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:53:47 10 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:53:47 10 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:53:47 10 Apr 2017 UTC /home/sg626/p6260542.log /home/sg626/p6260542.eng /home/sg626/p6260542.asc /home/sg626/p6260542.pro /home/sg626/p6260542.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 00:53:47 10 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:53:47 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:53:47 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:53:47 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:53:47 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:53:47 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:53:47 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:53:47 10 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:53:47 10 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:53:47 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:53:47 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:53:47 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:53:47 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:53:47 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:53:47 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:53:47 10 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:53:47 10 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:53:47 10 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:53:47 10 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:53:47 10 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:53:47 10 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:53:47 10 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:53:47 10 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:53:47 10 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 00:53:47 10 Apr 2017 UTC 04:37:22 10 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 16492 04:37:23 10 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:40:35 10 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 16762 04:40:35 10 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:40:35 10 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:40:35 10 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:40:35 10 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:40:35 10 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170409184034 ] 04:40:35 10 Apr 2017 UTC: INFO: Base.py(1333): PID:16769 04:40:35 10 Apr 2017 UTC: INFO: Base.py(1375): Started processing 04:40:35 10 Apr 2017 UTC 04:40:35 10 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:40:37 10 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:40:37 10 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:40:37 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:40:37 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:543 calls_made:1 call_cycle:0 04:40:37 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:40:37 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:543 calls_made:1 call_cycle:0 04:40:37 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:40:37 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:543 calls_made:1 call_cycle:0 04:40:37 10 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:543 calls_made:1 call_cycle:0 2233.6220 -15800.2810 04/10/17 04:35:01 UTC) to sdrifter@soest.hawaii.edu 04:40:37 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:543 calls_made:1 call_cycle:0 04:40:37 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:40:37 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:543 calls_made:1 call_cycle:0 04:40:37 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:40:37 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:543 calls_made:1 call_cycle:0 04:40:37 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:40:37 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:543 calls_made:1 call_cycle:0 04:40:37 10 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:40:37 10 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:40:45 10 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:40:47 10 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:40:47 10 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:40:47 10 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:40:47 10 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:40:47 10 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:40:52 10 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0543lz 04:40:52 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0543lz.x00 04:40:52 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0543lz.x01 04:40:52 10 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0543lz.r in process_file_group 04:40:52 10 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260543.log 04:40:52 10 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:40:52 10 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0543dz 04:40:52 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0543dz.x00 04:40:52 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0543dz.x01 04:40:52 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0543dz.x02 04:40:52 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0543dz.x03 04:40:52 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0543dz.x04 04:40:52 10 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0543dz.r in process_file_group 04:40:52 10 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [543] 04:40:52 10 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [543] 04:40:52 10 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260543) for profiles 04:40:52 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 04:40:52 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/688) 687 688 to QC_BAD because CT out of water 04:40:52 10 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.093m) 04:40:52 10 Apr 2017 UTC: INFO: QC.py(365): Changed (4/688) 2 214 215 239 to QC_PROBABLY_BAD because raw temperature spikes 04:40:52 10 Apr 2017 UTC: INFO: QC.py(377): Changed (2/688) 687 688 to QC_BAD because raw salinity below bound 04:40:52 10 Apr 2017 UTC: INFO: QC.py(408): Changed (3/688) 134 214 215 to QC_PROBABLY_BAD because raw conductivity spikes 04:40:52 10 Apr 2017 UTC: INFO: QC.py(180): Changed (4/688) 2 214 215 239 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:40:52 10 Apr 2017 UTC: INFO: QC.py(180): Changed (1/688) 134 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 04:40:52 10 Apr 2017 UTC: INFO: QC.py(365): Changed (4/688) 2 214 215 239 to QC_INTERPOLATED because temperature spikes 04:40:52 10 Apr 2017 UTC: INFO: QC.py(377): Changed (2/688) 687 688 to QC_BAD because salinity below bound 04:40:52 10 Apr 2017 UTC: INFO: QC.py(408): Changed (3/688) 134 214 215 to QC_INTERPOLATED because conductivity spikes 04:40:52 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/688) 261:265 to QC_BAD because slow apogee CT flow 04:40:52 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/688) 1:6 to QC_BAD because prior to dive start 04:40:52 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/688) 686 to QC_BAD because end of climb 04:40:52 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/688) 1:6 261:265 686:688 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:40:52 10 Apr 2017 UTC: INFO: QC.py(180): Changed (14/688) 1:6 261:265 686:688 to QC_BAD because changed corrected salin implies changed speed 04:40:53 10 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:40:53 10 Apr 2017 UTC: INFO: QC.py(180): Changed (3/688) 214 215 239 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 04:40:53 10 Apr 2017 UTC: INFO: QC.py(180): Changed (1/688) 134 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 04:40:53 10 Apr 2017 UTC: INFO: QC.py(180): Changed (3/688) 214 215 239 to QC_INTERPOLATED because changed corrected temp implies changed speed 04:40:53 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.64 cm/s 04:40:53 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.93 cm/s 04:40:53 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:40:53 10 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (199/688) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:40:53 10 Apr 2017 UTC: INFO: QC.py(180): Changed (1/688) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:40:53 10 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (199/688) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 04:40:53 10 Apr 2017 UTC: INFO: QC.py(180): Changed (1/688) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:40:53 10 Apr 2017 UTC: INFO: QC.py(180): Changed (14/688) 1:6 261:265 686:688 to QC_BAD because changed salinity implies changed optode oxygen 04:40:53 10 Apr 2017 UTC: INFO: QC.py(180): Changed (1/688) 134 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 04:40:53 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:40:53 10 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:40:53 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 04:40:54 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 543: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.03% reduction 04:40:54 10 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.543 04:40:54 10 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:40:54 10 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:40:54 10 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:40:54 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 04:40:54 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 04:45:32 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 04:45:34 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 04:45:34 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 04:46:39 10 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:46:39 10 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:46:39 10 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:46:39 10 Apr 2017 UTC /home/sg626/p6260543.log /home/sg626/p6260543.eng /home/sg626/p6260543.asc /home/sg626/p6260543.pro /home/sg626/p6260543.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 04:46:39 10 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:46:39 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:46:39 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:46:39 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:46:39 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:46:39 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:46:39 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:46:39 10 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:46:39 10 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:46:39 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:46:39 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:46:39 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:46:39 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:46:39 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:46:39 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:46:39 10 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:46:39 10 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:46:39 10 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:46:39 10 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:46:39 10 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:46:39 10 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:46:39 10 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:46:39 10 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:46:39 10 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 04:46:39 10 Apr 2017 UTC 08:31:31 10 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 26836 08:31:32 10 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:34:42 10 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 27021 08:34:42 10 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:34:42 10 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:34:42 10 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:34:42 10 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:34:42 10 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170409223441 ] 08:34:42 10 Apr 2017 UTC: INFO: Base.py(1333): PID:27028 08:34:42 10 Apr 2017 UTC: INFO: Base.py(1375): Started processing 08:34:42 10 Apr 2017 UTC 08:34:42 10 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:34:43 10 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:34:43 10 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:34:43 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:34:43 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:544 calls_made:1 call_cycle:0 08:34:43 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:34:43 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:544 calls_made:1 call_cycle:0 08:34:43 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:34:43 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:544 calls_made:1 call_cycle:0 08:34:43 10 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:544 calls_made:1 call_cycle:0 2233.8380 -15800.1940 04/10/17 08:29:05 UTC) to sdrifter@soest.hawaii.edu 08:34:43 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:544 calls_made:1 call_cycle:0 08:34:43 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:34:43 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:544 calls_made:1 call_cycle:0 08:34:43 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:34:43 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:544 calls_made:1 call_cycle:0 08:34:43 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:34:43 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:544 calls_made:1 call_cycle:0 08:34:43 10 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:34:43 10 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:34:52 10 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:34:54 10 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:34:54 10 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:34:54 10 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:34:54 10 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:34:54 10 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:34:59 10 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0544lz 08:34:59 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0544lz.x00 08:34:59 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0544lz.x01 08:34:59 10 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0544lz.r in process_file_group 08:34:59 10 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260544.log 08:34:59 10 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:34:59 10 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0544dz 08:34:59 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0544dz.x00 08:34:59 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0544dz.x01 08:34:59 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0544dz.x02 08:34:59 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0544dz.x03 08:34:59 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0544dz.x04 08:34:59 10 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0544dz.r in process_file_group 08:34:59 10 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [544] 08:34:59 10 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [544] 08:34:59 10 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260544) for profiles 08:34:59 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:34:59 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/682) 680:682 to QC_BAD because CT out of water 08:34:59 10 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.123m) 08:35:00 10 Apr 2017 UTC: INFO: QC.py(365): Changed (7/682) 2 251 252 263 267 272 273 to QC_PROBABLY_BAD because raw temperature spikes 08:35:00 10 Apr 2017 UTC: INFO: QC.py(377): Changed (1/682) 680 to QC_BAD because raw salinity below bound 08:35:00 10 Apr 2017 UTC: INFO: QC.py(408): Changed (5/682) 251 252 267 272 273 to QC_PROBABLY_BAD because raw conductivity spikes 08:35:00 10 Apr 2017 UTC: INFO: QC.py(180): Changed (7/682) 2 251 252 263 267 272 273 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:35:00 10 Apr 2017 UTC: INFO: QC.py(180): Changed (2/682) 681 682 to QC_BAD because changed raw cond implies changed raw salinity 08:35:00 10 Apr 2017 UTC: INFO: QC.py(365): Changed (7/682) 2 251 252 263 267 272 273 to QC_INTERPOLATED because temperature spikes 08:35:00 10 Apr 2017 UTC: INFO: QC.py(377): Changed (1/682) 680 to QC_BAD because salinity below bound 08:35:00 10 Apr 2017 UTC: INFO: QC.py(408): Changed (5/682) 251 252 267 272 273 to QC_INTERPOLATED because conductivity spikes 08:35:00 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/682) 261:265 to QC_BAD because slow apogee CT flow 08:35:00 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/682) 1:6 to QC_BAD because prior to dive start 08:35:00 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/682) 679 to QC_BAD because end of climb 08:35:00 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/682) 1:6 261:265 679:682 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:35:00 10 Apr 2017 UTC: INFO: QC.py(180): Changed (15/682) 1:6 261:265 679:682 to QC_BAD because changed corrected salin implies changed speed 08:35:00 10 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:35:00 10 Apr 2017 UTC: INFO: QC.py(180): Changed (5/682) 251 252 267 272 273 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 08:35:00 10 Apr 2017 UTC: INFO: QC.py(180): Changed (5/682) 251 252 267 272 273 to QC_INTERPOLATED because changed corrected temp implies changed speed 08:35:00 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.61 cm/s 08:35:00 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.16 cm/s 08:35:00 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:35:00 10 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (207/682) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:35:00 10 Apr 2017 UTC: INFO: QC.py(180): Changed (2/682) 2 251 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:35:00 10 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (207/682) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:35:00 10 Apr 2017 UTC: INFO: QC.py(180): Changed (2/682) 2 251 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:35:00 10 Apr 2017 UTC: INFO: QC.py(180): Changed (15/682) 1:6 261:265 679:682 to QC_BAD because changed salinity implies changed optode oxygen 08:35:00 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:35:00 10 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:35:00 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 08:35:01 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 544: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.20% reduction 08:35:01 10 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.544 08:35:01 10 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:35:01 10 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:35:01 10 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:35:01 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 08:35:01 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 08:39:39 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 08:39:40 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 08:39:40 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 08:40:45 10 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:40:45 10 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:40:45 10 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:40:45 10 Apr 2017 UTC /home/sg626/p6260544.log /home/sg626/p6260544.eng /home/sg626/p6260544.asc /home/sg626/p6260544.pro /home/sg626/p6260544.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 08:40:45 10 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:40:45 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:40:45 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:40:45 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:40:45 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:40:45 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:40:45 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:40:45 10 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:40:45 10 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:40:45 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:40:45 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:40:45 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:40:45 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:40:45 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:40:45 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:40:45 10 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:40:45 10 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:40:45 10 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:40:45 10 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:40:45 10 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:40:45 10 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:40:45 10 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:40:45 10 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:40:45 10 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 08:40:45 10 Apr 2017 UTC 12:30:36 10 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 2664 12:30:36 10 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:33:52 10 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 2797 12:33:52 10 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:33:52 10 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:33:52 10 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:33:52 10 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:33:52 10 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170410023351 ] 12:33:52 10 Apr 2017 UTC: INFO: Base.py(1333): PID:2804 12:33:52 10 Apr 2017 UTC: INFO: Base.py(1375): Started processing 12:33:52 10 Apr 2017 UTC 12:33:52 10 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:33:53 10 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:33:53 10 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:33:53 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:33:53 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:545 calls_made:1 call_cycle:0 12:33:53 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:33:53 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:545 calls_made:1 call_cycle:0 12:33:53 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:33:53 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:545 calls_made:1 call_cycle:0 12:33:53 10 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:545 calls_made:1 call_cycle:0 2234.0570 -15759.6250 04/10/17 12:28:00 UTC) to sdrifter@soest.hawaii.edu 12:33:53 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:545 calls_made:1 call_cycle:0 12:33:53 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:33:53 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:545 calls_made:1 call_cycle:0 12:33:53 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:33:53 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:545 calls_made:1 call_cycle:0 12:33:53 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:33:53 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:545 calls_made:1 call_cycle:0 12:33:53 10 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:33:53 10 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:34:02 10 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:34:04 10 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:34:04 10 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:34:04 10 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:34:04 10 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:34:04 10 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:34:08 10 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0545lz 12:34:08 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0545lz.x00 12:34:08 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0545lz.x01 12:34:08 10 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0545lz.r in process_file_group 12:34:08 10 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260545.log 12:34:08 10 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:34:08 10 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0545dz 12:34:08 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0545dz.x00 12:34:08 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0545dz.x01 12:34:08 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0545dz.x02 12:34:08 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0545dz.x03 12:34:08 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0545dz.x04 12:34:08 10 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0545dz.r in process_file_group 12:34:09 10 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [545] 12:34:09 10 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [545] 12:34:09 10 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260545) for profiles 12:34:09 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 12:34:09 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/696) 694:696 to QC_BAD because CT out of water 12:34:09 10 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.113m) 12:34:09 10 Apr 2017 UTC: INFO: QC.py(365): Changed (5/696) 111 212 260 267 695 to QC_PROBABLY_BAD because raw temperature spikes 12:34:09 10 Apr 2017 UTC: INFO: QC.py(377): Changed (1/696) 695 to QC_BAD because raw salinity below bound 12:34:09 10 Apr 2017 UTC: INFO: QC.py(408): Changed (2/696) 111 267 to QC_PROBABLY_BAD because raw conductivity spikes 12:34:09 10 Apr 2017 UTC: INFO: QC.py(180): Changed (4/696) 111 212 260 267 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 12:34:09 10 Apr 2017 UTC: INFO: QC.py(180): Changed (2/696) 694 696 to QC_BAD because changed raw cond implies changed raw salinity 12:34:09 10 Apr 2017 UTC: INFO: QC.py(365): Changed (5/696) 111 212 260 267 695 to QC_INTERPOLATED because temperature spikes 12:34:09 10 Apr 2017 UTC: INFO: QC.py(377): Changed (1/696) 695 to QC_BAD because salinity below bound 12:34:09 10 Apr 2017 UTC: INFO: QC.py(408): Changed (2/696) 111 267 to QC_INTERPOLATED because conductivity spikes 12:34:09 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/696) 265:269 to QC_BAD because slow apogee CT flow 12:34:09 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/696) 1:6 to QC_BAD because prior to dive start 12:34:09 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/696) 1:6 265:269 694:696 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:34:09 10 Apr 2017 UTC: INFO: QC.py(180): Changed (14/696) 1:6 265:269 694:696 to QC_BAD because changed corrected salin implies changed speed 12:34:10 10 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:34:10 10 Apr 2017 UTC: INFO: QC.py(180): Changed (3/696) 111 212 260 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 12:34:10 10 Apr 2017 UTC: INFO: QC.py(180): Changed (3/696) 111 212 260 to QC_INTERPOLATED because changed corrected temp implies changed speed 12:34:10 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.95 cm/s 12:34:10 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.34 cm/s 12:34:10 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:34:10 10 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (207/696) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:34:10 10 Apr 2017 UTC: INFO: QC.py(180): Changed (2/696) 111 695 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 12:34:10 10 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (207/696) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 12:34:10 10 Apr 2017 UTC: INFO: QC.py(180): Changed (2/696) 111 695 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 12:34:10 10 Apr 2017 UTC: INFO: QC.py(180): Changed (14/696) 1:6 265:269 694:696 to QC_BAD because changed salinity implies changed optode oxygen 12:34:10 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:34:10 10 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:34:10 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 12:34:10 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 545: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.01% reduction 12:34:10 10 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.545 12:34:10 10 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:34:10 10 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:34:10 10 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:34:11 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 12:34:11 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 12:38:52 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 12:38:54 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 12:38:54 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 12:39:59 10 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:39:59 10 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:39:59 10 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 12:39:59 10 Apr 2017 UTC /home/sg626/p6260545.log /home/sg626/p6260545.eng /home/sg626/p6260545.asc /home/sg626/p6260545.pro /home/sg626/p6260545.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 12:39:59 10 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:39:59 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:39:59 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:39:59 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:39:59 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:39:59 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:39:59 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:39:59 10 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:39:59 10 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:39:59 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:39:59 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:39:59 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:39:59 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:39:59 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:39:59 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:39:59 10 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:39:59 10 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 12:39:59 10 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 12:39:59 10 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 12:39:59 10 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 12:39:59 10 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:39:59 10 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:39:59 10 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:39:59 10 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 12:39:59 10 Apr 2017 UTC 16:28:39 10 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 9016 16:28:39 10 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:31:56 10 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 9229 16:31:56 10 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:31:56 10 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:31:56 10 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:31:56 10 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:31:56 10 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170410063156 ] 16:31:56 10 Apr 2017 UTC: INFO: Base.py(1333): PID:9236 16:31:56 10 Apr 2017 UTC: INFO: Base.py(1375): Started processing 16:31:56 10 Apr 2017 UTC 16:31:56 10 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:31:58 10 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:31:58 10 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:31:58 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:31:58 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:546 calls_made:3 call_cycle:0 16:31:58 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:31:58 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:546 calls_made:3 call_cycle:0 16:31:58 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:31:58 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:546 calls_made:3 call_cycle:0 16:31:58 10 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:546 calls_made:3 call_cycle:0 2233.0720 -15801.6070 04/10/17 16:22:50 UTC) to sdrifter@soest.hawaii.edu 16:31:58 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:546 calls_made:3 call_cycle:0 16:31:58 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:31:58 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:546 calls_made:3 call_cycle:0 16:31:58 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:31:58 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:546 calls_made:3 call_cycle:0 16:31:58 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:31:58 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:546 calls_made:3 call_cycle:0 16:31:58 10 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:31:58 10 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:32:07 10 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:32:08 10 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:32:08 10 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:32:08 10 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:32:08 10 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:32:08 10 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:32:13 10 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0546lz 16:32:13 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0546lz.x00 16:32:13 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0546lz.x01 16:32:13 10 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0546lz.r in process_file_group 16:32:13 10 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260546.log 16:32:13 10 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:32:13 10 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0546dz 16:32:13 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0546dz.x00 16:32:13 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0546dz.x01 16:32:13 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0546dz.x02 16:32:13 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0546dz.x03 16:32:13 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0546dz.x04 16:32:13 10 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0546dz.r in process_file_group 16:32:13 10 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [546] 16:32:13 10 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [546] 16:32:14 10 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260546) for profiles 16:32:14 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:32:14 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/699) 698 699 to QC_BAD because CT out of water 16:32:14 10 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.109m) 16:32:14 10 Apr 2017 UTC: INFO: QC.py(365): Changed (6/699) 2 202 203 247 258 259 to QC_PROBABLY_BAD because raw temperature spikes 16:32:14 10 Apr 2017 UTC: INFO: QC.py(377): Changed (1/699) 699 to QC_BAD because raw salinity below bound 16:32:14 10 Apr 2017 UTC: INFO: QC.py(408): Changed (5/699) 202 203 247 258 259 to QC_PROBABLY_BAD because raw conductivity spikes 16:32:14 10 Apr 2017 UTC: INFO: QC.py(180): Changed (6/699) 2 202 203 247 258 259 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:32:14 10 Apr 2017 UTC: INFO: QC.py(180): Changed (1/699) 698 to QC_BAD because changed raw cond implies changed raw salinity 16:32:14 10 Apr 2017 UTC: INFO: QC.py(365): Changed (6/699) 2 202 203 247 258 259 to QC_INTERPOLATED because temperature spikes 16:32:14 10 Apr 2017 UTC: INFO: QC.py(377): Changed (1/699) 699 to QC_BAD because salinity below bound 16:32:14 10 Apr 2017 UTC: INFO: QC.py(408): Changed (5/699) 202 203 247 258 259 to QC_INTERPOLATED because conductivity spikes 16:32:14 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/699) 251:255 to QC_BAD because slow apogee CT flow 16:32:14 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/699) 1:6 to QC_BAD because prior to dive start 16:32:14 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/699) 1:6 251:255 698 699 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:32:14 10 Apr 2017 UTC: INFO: QC.py(180): Changed (13/699) 1:6 251:255 698 699 to QC_BAD because changed corrected salin implies changed speed 16:32:15 10 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:32:15 10 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 546 interp_salinity data_points in_between 349 401 % suspect thermal-inertia points 359 392 16:32:15 10 Apr 2017 UTC: INFO: QC.py(180): Changed (5/699) 202 203 247 258 259 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 16:32:15 10 Apr 2017 UTC: INFO: QC.py(180): Changed (5/699) 202 203 247 258 259 to QC_INTERPOLATED because changed corrected temp implies changed speed 16:32:15 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.20 cm/s 16:32:15 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.43 cm/s 16:32:15 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:32:15 10 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (202/699) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:32:15 10 Apr 2017 UTC: INFO: QC.py(180): Changed (1/699) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:32:15 10 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (202/699) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:32:15 10 Apr 2017 UTC: INFO: QC.py(180): Changed (1/699) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:32:15 10 Apr 2017 UTC: INFO: QC.py(180): Changed (13/699) 1:6 251:255 698 699 to QC_BAD because changed salinity implies changed optode oxygen 16:32:15 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:32:15 10 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:32:15 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:32:15 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 546: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.86% reduction 16:32:15 10 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.546 16:32:15 10 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:32:15 10 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:32:15 10 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:32:15 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:32:15 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:36:58 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 16:37:00 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:37:00 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:38:04 10 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:38:04 10 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:38:04 10 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:38:04 10 Apr 2017 UTC /home/sg626/p6260546.log /home/sg626/p6260546.eng /home/sg626/p6260546.asc /home/sg626/p6260546.pro /home/sg626/p6260546.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:38:04 10 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:38:04 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:38:04 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:38:04 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:38:04 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:38:04 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:38:04 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:38:04 10 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:38:04 10 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:38:04 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:38:04 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:38:04 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:38:04 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:38:04 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:38:04 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:38:04 10 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:38:04 10 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:38:04 10 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:38:04 10 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:38:04 10 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:38:04 10 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:38:04 10 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:38:04 10 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:38:04 10 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 16:38:04 10 Apr 2017 UTC 20:27:25 10 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 15082 20:27:25 10 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:30:48 10 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 15302 20:30:48 10 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:30:48 10 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:30:48 10 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:30:48 10 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:30:48 10 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170410103047 ] 20:30:48 10 Apr 2017 UTC: INFO: Base.py(1333): PID:15309 20:30:48 10 Apr 2017 UTC: INFO: Base.py(1375): Started processing 20:30:48 10 Apr 2017 UTC 20:30:48 10 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:30:50 10 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:30:50 10 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:30:50 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:30:50 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:547 calls_made:1 call_cycle:0 20:30:50 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:30:50 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:547 calls_made:1 call_cycle:0 20:30:50 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:30:50 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:547 calls_made:1 call_cycle:0 20:30:50 10 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:547 calls_made:1 call_cycle:0 2232.4590 -15801.0520 04/10/17 20:25:00 UTC) to sdrifter@soest.hawaii.edu 20:30:50 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:547 calls_made:1 call_cycle:0 20:30:50 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:30:50 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:547 calls_made:1 call_cycle:0 20:30:50 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:30:50 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:547 calls_made:1 call_cycle:0 20:30:50 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:30:50 10 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:547 calls_made:1 call_cycle:0 20:30:50 10 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:30:50 10 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:30:58 10 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:31:00 10 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:31:00 10 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:31:00 10 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:31:00 10 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:31:00 10 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:31:05 10 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0547lz 20:31:05 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0547lz.x00 20:31:05 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0547lz.x01 20:31:05 10 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0547lz.r in process_file_group 20:31:05 10 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260547.log 20:31:05 10 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:31:05 10 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0547dz 20:31:05 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0547dz.x00 20:31:05 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0547dz.x01 20:31:05 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0547dz.x02 20:31:05 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0547dz.x03 20:31:05 10 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0547dz.x04 20:31:05 10 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0547dz.r in process_file_group 20:31:05 10 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [547] 20:31:05 10 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [547] 20:31:05 10 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260547) for profiles 20:31:05 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 20:31:06 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (4/714) 711:714 to QC_BAD because CT out of water 20:31:06 10 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.099m) 20:31:06 10 Apr 2017 UTC: INFO: QC.py(365): Changed (4/714) 258 284 285 712 to QC_PROBABLY_BAD because raw temperature spikes 20:31:06 10 Apr 2017 UTC: INFO: QC.py(377): Changed (1/714) 712 to QC_BAD because raw salinity below bound 20:31:06 10 Apr 2017 UTC: INFO: QC.py(408): Changed (2/714) 284 285 to QC_PROBABLY_BAD because raw conductivity spikes 20:31:06 10 Apr 2017 UTC: INFO: QC.py(180): Changed (3/714) 258 284 285 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 20:31:06 10 Apr 2017 UTC: INFO: QC.py(180): Changed (3/714) 711 713 714 to QC_BAD because changed raw cond implies changed raw salinity 20:31:06 10 Apr 2017 UTC: INFO: QC.py(365): Changed (4/714) 258 284 285 712 to QC_INTERPOLATED because temperature spikes 20:31:06 10 Apr 2017 UTC: INFO: QC.py(377): Changed (1/714) 712 to QC_BAD because salinity below bound 20:31:06 10 Apr 2017 UTC: INFO: QC.py(408): Changed (2/714) 284 285 to QC_INTERPOLATED because conductivity spikes 20:31:06 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/714) 256:260 to QC_BAD because slow apogee CT flow 20:31:06 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/714) 1:6 to QC_BAD because prior to dive start 20:31:06 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/714) 1:6 256:260 711:714 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 20:31:06 10 Apr 2017 UTC: INFO: QC.py(180): Changed (15/714) 1:6 256:260 711:714 to QC_BAD because changed corrected salin implies changed speed 20:31:06 10 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 20:31:06 10 Apr 2017 UTC: INFO: QC.py(180): Changed (2/714) 284 285 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 20:31:06 10 Apr 2017 UTC: INFO: QC.py(180): Changed (2/714) 284 285 to QC_INTERPOLATED because changed corrected temp implies changed speed 20:31:06 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.11 cm/s 20:31:06 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.18 cm/s 20:31:06 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 20:31:06 10 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (203/714) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 20:31:06 10 Apr 2017 UTC: INFO: QC.py(180): Changed (1/714) 712 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 20:31:06 10 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (203/714) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 20:31:06 10 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (8/714) 707:714 to QC_BAD because bad aa4330 oyxgen 20:31:06 10 Apr 2017 UTC: INFO: QC.py(180): Changed (11/714) 1:6 256:260 to QC_BAD because changed salinity implies changed optode oxygen 20:31:06 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 20:31:06 10 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 20:31:06 10 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 20:31:07 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 547: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.10% reduction 20:31:07 10 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.547 20:31:07 10 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:31:07 10 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:31:07 10 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:31:07 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 20:31:07 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 20:35:50 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 20:35:52 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 20:35:52 10 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 20:36:57 10 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:36:57 10 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:36:57 10 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:36:57 10 Apr 2017 UTC /home/sg626/p6260547.log /home/sg626/p6260547.eng /home/sg626/p6260547.asc /home/sg626/p6260547.pro /home/sg626/p6260547.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 20:36:57 10 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:36:57 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:36:57 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:36:57 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:36:57 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:36:57 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:36:57 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:36:57 10 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:36:57 10 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:36:57 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:36:57 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:36:57 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:36:57 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:36:57 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:36:57 10 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:36:57 10 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:36:57 10 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:36:57 10 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:36:57 10 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:36:57 10 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:36:57 10 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:36:57 10 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:36:57 10 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:36:57 10 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 20:36:57 10 Apr 2017 UTC 00:28:27 11 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 21167 00:28:27 11 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:31:43 11 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 21381 00:31:43 11 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:31:43 11 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:31:43 11 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:31:43 11 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:31:43 11 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170410143142 ] 00:31:43 11 Apr 2017 UTC: INFO: Base.py(1333): PID:21388 00:31:43 11 Apr 2017 UTC: INFO: Base.py(1375): Started processing 00:31:43 11 Apr 2017 UTC 00:31:43 11 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:31:44 11 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:31:44 11 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:31:44 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:31:44 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:548 calls_made:1 call_cycle:0 00:31:44 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:31:44 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:548 calls_made:1 call_cycle:0 00:31:44 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:31:44 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:548 calls_made:1 call_cycle:0 00:31:44 11 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:548 calls_made:1 call_cycle:0 2232.6070 -15800.7960 04/11/17 00:25:56 UTC) to sdrifter@soest.hawaii.edu 00:31:44 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:548 calls_made:1 call_cycle:0 00:31:44 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:31:44 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:548 calls_made:1 call_cycle:0 00:31:44 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:31:44 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:548 calls_made:1 call_cycle:0 00:31:44 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:31:44 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:548 calls_made:1 call_cycle:0 00:31:44 11 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:31:44 11 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:31:53 11 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:31:55 11 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:31:55 11 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:31:55 11 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:31:55 11 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:31:55 11 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:32:00 11 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0548lz 00:32:00 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0548lz.x00 00:32:00 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0548lz.x01 00:32:00 11 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0548lz.r in process_file_group 00:32:00 11 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260548.log 00:32:00 11 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:32:00 11 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0548dz 00:32:00 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0548dz.x00 00:32:00 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0548dz.x01 00:32:00 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0548dz.x02 00:32:00 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0548dz.x03 00:32:00 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0548dz.x04 00:32:00 11 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0548dz.r in process_file_group 00:32:00 11 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [548] 00:32:00 11 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [548] 00:32:00 11 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260548) for profiles 00:32:00 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 00:32:00 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (4/726) 723:726 to QC_BAD because CT out of water 00:32:00 11 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.192m) 00:32:00 11 Apr 2017 UTC: INFO: QC.py(365): Changed (7/726) 2 236 237 278 312 724 725 to QC_PROBABLY_BAD because raw temperature spikes 00:32:00 11 Apr 2017 UTC: INFO: QC.py(408): Changed (4/726) 236 237 269 312 to QC_PROBABLY_BAD because raw conductivity spikes 00:32:00 11 Apr 2017 UTC: INFO: QC.py(180): Changed (7/726) 2 236 237 278 312 724 725 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:32:00 11 Apr 2017 UTC: INFO: QC.py(180): Changed (1/726) 269 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 00:32:00 11 Apr 2017 UTC: INFO: QC.py(180): Changed (4/726) 723:726 to QC_BAD because changed raw cond implies changed raw salinity 00:32:00 11 Apr 2017 UTC: INFO: QC.py(365): Changed (7/726) 2 236 237 278 312 724 725 to QC_INTERPOLATED because temperature spikes 00:32:00 11 Apr 2017 UTC: INFO: QC.py(408): Changed (4/726) 236 237 269 312 to QC_INTERPOLATED because conductivity spikes 00:32:00 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/726) 276:280 to QC_BAD because slow apogee CT flow 00:32:00 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/726) 1:6 to QC_BAD because prior to dive start 00:32:00 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/726) 1:6 276:280 723:726 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:32:00 11 Apr 2017 UTC: INFO: QC.py(180): Changed (15/726) 1:6 276:280 723:726 to QC_BAD because changed corrected salin implies changed speed 00:32:01 11 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:32:01 11 Apr 2017 UTC: INFO: QC.py(180): Changed (3/726) 236 237 312 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 00:32:01 11 Apr 2017 UTC: INFO: QC.py(180): Changed (1/726) 269 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 00:32:01 11 Apr 2017 UTC: INFO: QC.py(180): Changed (3/726) 236 237 312 to QC_INTERPOLATED because changed corrected temp implies changed speed 00:32:01 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.63 cm/s 00:32:01 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.41 cm/s 00:32:01 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:32:01 11 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (206/726) 154 155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:32:01 11 Apr 2017 UTC: INFO: QC.py(180): Changed (4/726) 2 236 724 725 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:32:01 11 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (206/726) 154 155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 00:32:01 11 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/726) 722 726 to QC_BAD because bad aa4330 oyxgen 00:32:01 11 Apr 2017 UTC: INFO: QC.py(180): Changed (4/726) 2 236 724 725 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:32:01 11 Apr 2017 UTC: INFO: QC.py(180): Changed (14/726) 1:6 276:280 723:725 to QC_BAD because changed salinity implies changed optode oxygen 00:32:01 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:32:01 11 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:32:01 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 00:32:02 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 548: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.07% reduction 00:32:02 11 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.548 00:32:02 11 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:32:02 11 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:32:02 11 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:32:02 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 00:32:02 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 00:36:41 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 00:36:43 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 00:36:43 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 00:37:47 11 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:37:47 11 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:37:47 11 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:37:47 11 Apr 2017 UTC /home/sg626/p6260548.log /home/sg626/p6260548.eng /home/sg626/p6260548.asc /home/sg626/p6260548.pro /home/sg626/p6260548.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 00:37:47 11 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:37:47 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:37:47 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:37:47 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:37:47 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:37:47 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:37:47 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:37:47 11 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:37:47 11 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:37:47 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:37:47 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:37:47 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:37:47 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:37:47 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:37:47 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:37:47 11 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:37:47 11 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:37:47 11 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:37:47 11 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:37:47 11 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:37:47 11 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:37:47 11 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:37:47 11 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:37:47 11 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 00:37:47 11 Apr 2017 UTC 04:24:21 11 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 28597 04:24:21 11 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:27:36 11 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 28768 04:27:36 11 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:27:36 11 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:27:36 11 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:27:36 11 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:27:36 11 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170410182735 ] 04:27:36 11 Apr 2017 UTC: INFO: Base.py(1333): PID:28780 04:27:36 11 Apr 2017 UTC: INFO: Base.py(1375): Started processing 04:27:36 11 Apr 2017 UTC 04:27:36 11 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:27:37 11 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:27:37 11 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:27:37 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:27:37 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:549 calls_made:1 call_cycle:0 04:27:37 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:27:37 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:549 calls_made:1 call_cycle:0 04:27:37 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:27:37 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:549 calls_made:1 call_cycle:0 04:27:37 11 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:549 calls_made:1 call_cycle:0 2232.8990 -15800.4190 04/11/17 04:21:55 UTC) to sdrifter@soest.hawaii.edu 04:27:37 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:549 calls_made:1 call_cycle:0 04:27:37 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:27:37 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:549 calls_made:1 call_cycle:0 04:27:37 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:27:37 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:549 calls_made:1 call_cycle:0 04:27:37 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:27:37 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:549 calls_made:1 call_cycle:0 04:27:37 11 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:27:37 11 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:27:46 11 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:27:48 11 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:27:48 11 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:27:48 11 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:27:48 11 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:27:48 11 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:27:52 11 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0549lz 04:27:52 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0549lz.x00 04:27:52 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0549lz.x01 04:27:52 11 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0549lz.r in process_file_group 04:27:52 11 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260549.log 04:27:52 11 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:27:52 11 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0549dz 04:27:53 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0549dz.x00 04:27:53 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0549dz.x01 04:27:53 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0549dz.x02 04:27:53 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0549dz.x03 04:27:53 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0549dz.x04 04:27:53 11 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0549dz.r in process_file_group 04:27:53 11 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [549] 04:27:53 11 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [549] 04:27:53 11 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260549) for profiles 04:27:53 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 04:27:53 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/686) 685 686 to QC_BAD because CT out of water 04:27:53 11 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.125m) 04:27:53 11 Apr 2017 UTC: INFO: QC.py(365): Changed (2/686) 2 3 to QC_PROBABLY_BAD because raw temperature spikes 04:27:53 11 Apr 2017 UTC: INFO: QC.py(180): Changed (2/686) 2 3 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:27:53 11 Apr 2017 UTC: INFO: QC.py(180): Changed (2/686) 685 686 to QC_BAD because changed raw cond implies changed raw salinity 04:27:53 11 Apr 2017 UTC: INFO: QC.py(365): Changed (2/686) 2 3 to QC_INTERPOLATED because temperature spikes 04:27:53 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/686) 255:259 to QC_BAD because slow apogee CT flow 04:27:53 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/686) 1:6 to QC_BAD because prior to dive start 04:27:53 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/686) 1:6 255:259 685 686 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:27:53 11 Apr 2017 UTC: INFO: QC.py(180): Changed (13/686) 1:6 255:259 685 686 to QC_BAD because changed corrected salin implies changed speed 04:27:54 11 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:27:54 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.97 cm/s 04:27:54 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.46 cm/s 04:27:54 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:27:54 11 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (206/686) 134 135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:27:54 11 Apr 2017 UTC: INFO: QC.py(180): Changed (2/686) 2 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:27:54 11 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (206/686) 134 135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 04:27:54 11 Apr 2017 UTC: INFO: QC.py(180): Changed (2/686) 2 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:27:54 11 Apr 2017 UTC: INFO: QC.py(180): Changed (13/686) 1:6 255:259 685 686 to QC_BAD because changed salinity implies changed optode oxygen 04:27:54 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:27:54 11 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:27:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 04:27:54 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 549: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.90% reduction 04:27:55 11 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.549 04:27:55 11 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:27:55 11 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:27:55 11 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:27:55 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 04:27:55 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 04:32:38 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 04:32:40 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 04:32:40 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 04:33:46 11 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:33:46 11 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:33:46 11 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:33:46 11 Apr 2017 UTC /home/sg626/p6260549.log /home/sg626/p6260549.eng /home/sg626/p6260549.asc /home/sg626/p6260549.pro /home/sg626/p6260549.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 04:33:46 11 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:33:46 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:33:46 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:33:46 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:33:46 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:33:46 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:33:46 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:33:46 11 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:33:46 11 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:33:46 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:33:46 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:33:46 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:33:46 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:33:46 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:33:46 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:33:46 11 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:33:46 11 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:33:46 11 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:33:46 11 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:33:46 11 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:33:46 11 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:33:46 11 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:33:46 11 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:33:46 11 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 04:33:46 11 Apr 2017 UTC 08:16:30 11 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 2891 08:16:30 11 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:19:45 11 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 2951 08:19:45 11 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:19:45 11 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:19:45 11 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:19:45 11 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:19:45 11 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170410221944 ] 08:19:45 11 Apr 2017 UTC: INFO: Base.py(1333): PID:2958 08:19:45 11 Apr 2017 UTC: INFO: Base.py(1375): Started processing 08:19:45 11 Apr 2017 UTC 08:19:46 11 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:19:47 11 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:19:47 11 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:19:47 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:19:47 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:550 calls_made:1 call_cycle:0 08:19:47 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:19:47 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:550 calls_made:1 call_cycle:0 08:19:47 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:19:47 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:550 calls_made:1 call_cycle:0 08:19:47 11 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:550 calls_made:1 call_cycle:0 2233.3960 -15800.7920 04/11/17 08:13:30 UTC) to sdrifter@soest.hawaii.edu 08:19:47 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:550 calls_made:1 call_cycle:0 08:19:47 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:19:47 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:550 calls_made:1 call_cycle:0 08:19:47 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:19:47 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:550 calls_made:1 call_cycle:0 08:19:47 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:19:47 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:550 calls_made:1 call_cycle:0 08:19:47 11 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:19:47 11 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:19:56 11 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:19:58 11 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:19:58 11 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:19:58 11 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:19:58 11 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:19:58 11 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:20:03 11 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0550lz 08:20:03 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0550lz.x00 08:20:03 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0550lz.x01 08:20:03 11 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0550lz.r in process_file_group 08:20:03 11 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260550.log 08:20:03 11 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:20:03 11 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0550dz 08:20:03 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0550dz.x00 08:20:03 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0550dz.x01 08:20:03 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0550dz.x02 08:20:03 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0550dz.x03 08:20:03 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0550dz.x04 08:20:03 11 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0550dz.r in process_file_group 08:20:03 11 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [550] 08:20:03 11 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [550] 08:20:04 11 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260550) for profiles 08:20:04 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:20:04 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/712) 710 711 to QC_BAD because CT out of water 08:20:04 11 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.069m) 08:20:04 11 Apr 2017 UTC: INFO: QC.py(365): Changed (4/712) 2:4 711 to QC_PROBABLY_BAD because raw temperature spikes 08:20:04 11 Apr 2017 UTC: INFO: QC.py(180): Changed (4/712) 2:4 711 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:20:04 11 Apr 2017 UTC: INFO: QC.py(180): Changed (2/712) 710 711 to QC_BAD because changed raw cond implies changed raw salinity 08:20:04 11 Apr 2017 UTC: INFO: QC.py(365): Changed (4/712) 2:4 711 to QC_INTERPOLATED because temperature spikes 08:20:04 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/712) 266:270 to QC_BAD because slow apogee CT flow 08:20:04 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/712) 1:6 to QC_BAD because prior to dive start 08:20:04 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/712) 712 to QC_BAD because end of climb 08:20:04 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/712) 1:6 266:270 710:712 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:20:04 11 Apr 2017 UTC: INFO: QC.py(180): Changed (14/712) 1:6 266:270 710:712 to QC_BAD because changed corrected salin implies changed speed 08:20:05 11 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:20:05 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.14 cm/s 08:20:05 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.05 cm/s 08:20:05 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:20:05 11 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (198/712) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:20:05 11 Apr 2017 UTC: INFO: QC.py(180): Changed (4/712) 2:4 711 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:20:05 11 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (198/712) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:20:05 11 Apr 2017 UTC: INFO: QC.py(180): Changed (4/712) 2:4 711 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:20:05 11 Apr 2017 UTC: INFO: QC.py(180): Changed (14/712) 1:6 266:270 710:712 to QC_BAD because changed salinity implies changed optode oxygen 08:20:05 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:20:05 11 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:20:05 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 08:20:06 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 550: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.97% reduction 08:20:06 11 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.550 08:20:06 11 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:20:06 11 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:20:06 11 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:20:06 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 08:20:06 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 08:24:50 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 08:24:52 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 08:24:52 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 08:25:58 11 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:25:58 11 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:25:58 11 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:25:58 11 Apr 2017 UTC /home/sg626/p6260550.log /home/sg626/p6260550.eng /home/sg626/p6260550.asc /home/sg626/p6260550.pro /home/sg626/p6260550.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 08:25:58 11 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:25:58 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:25:58 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:25:58 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:25:58 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:25:58 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:25:58 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:25:58 11 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:25:58 11 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:25:58 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:25:58 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:25:58 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:25:58 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:25:58 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:25:58 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:25:58 11 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:25:58 11 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:25:58 11 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:25:58 11 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:25:58 11 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:25:58 11 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:25:58 11 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:25:58 11 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:25:58 11 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 08:25:58 11 Apr 2017 UTC 12:21:28 11 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 10360 12:21:28 11 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:25:00 11 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 10478 12:25:00 11 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:25:00 11 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:25:00 11 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:25:00 11 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:25:00 11 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170411022459 ] 12:25:00 11 Apr 2017 UTC: INFO: Base.py(1333): PID:10485 12:25:00 11 Apr 2017 UTC: INFO: Base.py(1375): Started processing 12:25:00 11 Apr 2017 UTC 12:25:00 11 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:25:02 11 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:25:02 11 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:25:02 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:25:02 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:551 calls_made:1 call_cycle:0 12:25:02 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:25:02 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:551 calls_made:1 call_cycle:0 12:25:02 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:25:02 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:551 calls_made:1 call_cycle:0 12:25:02 11 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:551 calls_made:1 call_cycle:0 2233.3150 -15800.2030 04/11/17 12:18:49 UTC) to sdrifter@soest.hawaii.edu 12:25:02 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:551 calls_made:1 call_cycle:0 12:25:02 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:25:02 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:551 calls_made:1 call_cycle:0 12:25:02 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:25:02 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:551 calls_made:1 call_cycle:0 12:25:02 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:25:02 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:551 calls_made:1 call_cycle:0 12:25:02 11 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:25:02 11 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:25:10 11 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:25:12 11 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:25:12 11 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:25:12 11 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:25:12 11 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:25:12 11 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:25:17 11 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0551lz 12:25:17 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0551lz.x00 12:25:17 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0551lz.x01 12:25:17 11 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0551lz.r in process_file_group 12:25:17 11 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260551.log 12:25:17 11 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:25:17 11 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0551dz 12:25:17 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0551dz.x00 12:25:17 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0551dz.x01 12:25:17 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0551dz.x02 12:25:17 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0551dz.x03 12:25:17 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0551dz.x04 12:25:17 11 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0551dz.r in process_file_group 12:25:17 11 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [551] 12:25:17 11 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [551] 12:25:18 11 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260551) for profiles 12:25:18 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 12:25:18 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (4/734) 730 731 733 734 to QC_BAD because CT out of water 12:25:18 11 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.134m) 12:25:18 11 Apr 2017 UTC: INFO: QC.py(365): Changed (4/734) 2 4 269 731 to QC_PROBABLY_BAD because raw temperature spikes 12:25:18 11 Apr 2017 UTC: INFO: QC.py(377): Changed (1/734) 731 to QC_BAD because raw salinity below bound 12:25:18 11 Apr 2017 UTC: INFO: QC.py(180): Changed (3/734) 2 4 269 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 12:25:18 11 Apr 2017 UTC: INFO: QC.py(180): Changed (3/734) 730 733 734 to QC_BAD because changed raw cond implies changed raw salinity 12:25:18 11 Apr 2017 UTC: INFO: QC.py(365): Changed (4/734) 2 4 269 731 to QC_INTERPOLATED because temperature spikes 12:25:18 11 Apr 2017 UTC: INFO: QC.py(377): Changed (1/734) 731 to QC_BAD because salinity below bound 12:25:18 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/734) 267:271 to QC_BAD because slow apogee CT flow 12:25:18 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/734) 1:6 to QC_BAD because prior to dive start 12:25:18 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/734) 729 732 to QC_BAD because end of climb 12:25:18 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (17/734) 1:6 267:271 729:734 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:25:18 11 Apr 2017 UTC: INFO: QC.py(180): Changed (17/734) 1:6 267:271 729:734 to QC_BAD because changed corrected salin implies changed speed 12:25:18 11 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:25:18 11 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 551 interp_salinity data_points in_between 413 421 % suspect thermal-inertia points 417 12:25:19 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.30 cm/s 12:25:19 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.67 cm/s 12:25:19 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:25:19 11 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (210/734) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:25:19 11 Apr 2017 UTC: INFO: QC.py(180): Changed (3/734) 2 4 731 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 12:25:19 11 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (210/734) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 12:25:19 11 Apr 2017 UTC: INFO: QC.py(180): Changed (3/734) 2 4 731 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 12:25:19 11 Apr 2017 UTC: INFO: QC.py(180): Changed (17/734) 1:6 267:271 729:734 to QC_BAD because changed salinity implies changed optode oxygen 12:25:19 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:25:19 11 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:25:19 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 12:25:19 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 551: Data set size for profile, binned and kkyy files reduced by 17 points, a 2.32% reduction 12:25:19 11 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.551 12:25:19 11 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:25:19 11 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:25:19 11 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:25:20 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 12:25:20 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 12:30:01 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 12:30:03 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 12:30:03 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 12:31:09 11 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:31:09 11 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:31:09 11 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 12:31:09 11 Apr 2017 UTC /home/sg626/p6260551.log /home/sg626/p6260551.eng /home/sg626/p6260551.asc /home/sg626/p6260551.pro /home/sg626/p6260551.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 12:31:09 11 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:31:09 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:31:09 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:31:09 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:31:09 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:31:09 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:31:09 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:31:09 11 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:31:09 11 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:31:09 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:31:09 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:31:09 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:31:09 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:31:09 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:31:09 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:31:09 11 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:31:09 11 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 12:31:09 11 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 12:31:09 11 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 12:31:09 11 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 12:31:09 11 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:31:09 11 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:31:09 11 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:31:09 11 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 12:31:09 11 Apr 2017 UTC 16:21:10 11 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 16876 16:21:10 11 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:24:30 11 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 17008 16:24:30 11 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:24:30 11 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:24:30 11 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:24:30 11 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:24:30 11 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170411062429 ] 16:24:30 11 Apr 2017 UTC: INFO: Base.py(1333): PID:17015 16:24:30 11 Apr 2017 UTC: INFO: Base.py(1375): Started processing 16:24:30 11 Apr 2017 UTC 16:24:30 11 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:24:32 11 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:24:32 11 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:24:32 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:24:32 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:552 calls_made:1 call_cycle:0 16:24:32 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:24:32 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:552 calls_made:1 call_cycle:0 16:24:32 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:24:32 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:552 calls_made:1 call_cycle:0 16:24:32 11 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:552 calls_made:1 call_cycle:0 2233.8330 -15800.1350 04/11/17 16:18:44 UTC) to sdrifter@soest.hawaii.edu 16:24:32 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:552 calls_made:1 call_cycle:0 16:24:32 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:24:32 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:552 calls_made:1 call_cycle:0 16:24:32 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:24:32 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:552 calls_made:1 call_cycle:0 16:24:32 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:24:32 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:552 calls_made:1 call_cycle:0 16:24:32 11 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:24:32 11 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:24:41 11 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:24:42 11 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:24:42 11 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:24:42 11 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:24:42 11 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:24:42 11 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:24:47 11 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0552lz 16:24:47 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0552lz.x00 16:24:47 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0552lz.x01 16:24:47 11 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0552lz.r in process_file_group 16:24:47 11 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260552.log 16:24:47 11 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:24:47 11 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0552dz 16:24:47 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0552dz.x00 16:24:47 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0552dz.x01 16:24:47 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0552dz.x02 16:24:47 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0552dz.x03 16:24:47 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0552dz.x04 16:24:47 11 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0552dz.r in process_file_group 16:24:48 11 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [552] 16:24:48 11 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [552] 16:24:48 11 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260552) for profiles 16:24:48 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:24:48 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/722) 721 722 to QC_BAD because CT out of water 16:24:48 11 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.053m) 16:24:48 11 Apr 2017 UTC: INFO: QC.py(365): Changed (6/722) 3 257 415 419 420 721 to QC_PROBABLY_BAD because raw temperature spikes 16:24:48 11 Apr 2017 UTC: INFO: QC.py(408): Changed (2/722) 419 420 to QC_PROBABLY_BAD because raw conductivity spikes 16:24:48 11 Apr 2017 UTC: INFO: QC.py(180): Changed (6/722) 3 257 415 419 420 721 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:24:48 11 Apr 2017 UTC: INFO: QC.py(180): Changed (2/722) 721 722 to QC_BAD because changed raw cond implies changed raw salinity 16:24:48 11 Apr 2017 UTC: INFO: QC.py(365): Changed (6/722) 3 257 415 419 420 721 to QC_INTERPOLATED because temperature spikes 16:24:48 11 Apr 2017 UTC: INFO: QC.py(408): Changed (2/722) 419 420 to QC_INTERPOLATED because conductivity spikes 16:24:48 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/722) 255:259 to QC_BAD because slow apogee CT flow 16:24:48 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/722) 1:6 to QC_BAD because prior to dive start 16:24:48 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3343): SUGGESTION: 552 interp_conductivity data_points between 140 146 % 31.7m SUSPECT unresolved strong conductivity anomaly 16:24:48 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/722) 1:6 255:259 721 722 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:24:48 11 Apr 2017 UTC: INFO: QC.py(180): Changed (13/722) 1:6 255:259 721 722 to QC_BAD because changed corrected salin implies changed speed 16:24:48 11 Apr 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 720 16:24:49 11 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:24:49 11 Apr 2017 UTC: INFO: QC.py(180): Changed (3/722) 415 419 420 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 16:24:49 11 Apr 2017 UTC: INFO: QC.py(180): Changed (3/722) 415 419 420 to QC_INTERPOLATED because changed corrected temp implies changed speed 16:24:49 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.05 cm/s 16:24:49 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.27 cm/s 16:24:49 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:24:49 11 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (205/722) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:24:49 11 Apr 2017 UTC: INFO: QC.py(180): Changed (5/722) 3 415 419 420 721 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:24:49 11 Apr 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/722) 720 to QC_BAD because slow flow in SBE43 16:24:49 11 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (205/722) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:24:49 11 Apr 2017 UTC: INFO: QC.py(180): Changed (5/722) 3 415 419 420 721 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:24:49 11 Apr 2017 UTC: INFO: QC.py(180): Changed (13/722) 1:6 255:259 721 722 to QC_BAD because changed salinity implies changed optode oxygen 16:24:49 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:24:49 11 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:24:49 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:24:49 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 552: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.80% reduction 16:24:49 11 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.552 16:24:49 11 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:24:49 11 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:24:49 11 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:24:50 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:24:50 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:29:34 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 16:29:36 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:29:36 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:30:42 11 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:30:42 11 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:30:42 11 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:30:42 11 Apr 2017 UTC /home/sg626/p6260552.log /home/sg626/p6260552.eng /home/sg626/p6260552.asc /home/sg626/p6260552.pro /home/sg626/p6260552.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:30:42 11 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:30:42 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:30:42 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:30:42 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:30:42 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:30:42 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:30:42 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:30:42 11 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:30:42 11 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:30:42 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:30:42 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:30:42 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:30:42 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:30:42 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:30:42 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:30:42 11 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:30:42 11 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:30:42 11 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:30:42 11 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:30:42 11 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:30:42 11 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:30:42 11 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:30:42 11 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:30:42 11 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 16:30:42 11 Apr 2017 UTC 20:23:20 11 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 4423 20:23:20 11 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:26:33 11 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 4477 20:26:33 11 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:26:33 11 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:26:33 11 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:26:33 11 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:26:33 11 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170411102631 ] 20:26:33 11 Apr 2017 UTC: INFO: Base.py(1333): PID:4484 20:26:33 11 Apr 2017 UTC: INFO: Base.py(1375): Started processing 20:26:33 11 Apr 2017 UTC 20:26:33 11 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:26:35 11 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:26:35 11 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:26:35 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:26:35 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:553 calls_made:1 call_cycle:0 20:26:35 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:26:35 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:553 calls_made:1 call_cycle:0 20:26:35 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:26:35 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:553 calls_made:1 call_cycle:0 20:26:35 11 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:553 calls_made:1 call_cycle:0 2234.0770 -15759.5820 04/11/17 20:20:37 UTC) to sdrifter@soest.hawaii.edu 20:26:35 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:553 calls_made:1 call_cycle:0 20:26:35 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:26:35 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:553 calls_made:1 call_cycle:0 20:26:35 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:26:35 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:553 calls_made:1 call_cycle:0 20:26:35 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:26:35 11 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:553 calls_made:1 call_cycle:0 20:26:35 11 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:26:35 11 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:26:44 11 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:26:47 11 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:26:47 11 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:26:47 11 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:26:47 11 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:26:47 11 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:26:52 11 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0553lz 20:26:52 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0553lz.x00 20:26:52 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0553lz.x01 20:26:52 11 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0553lz.r in process_file_group 20:26:52 11 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260553.log 20:26:52 11 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:26:52 11 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0553dz 20:26:52 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0553dz.x00 20:26:52 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0553dz.x01 20:26:52 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0553dz.x02 20:26:52 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0553dz.x03 20:26:52 11 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0553dz.x04 20:26:52 11 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0553dz.r in process_file_group 20:26:52 11 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [553] 20:26:52 11 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [553] 20:26:53 11 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260553) for profiles 20:26:53 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 20:26:53 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/723) 721:723 to QC_BAD because CT out of water 20:26:53 11 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.063m) 20:26:53 11 Apr 2017 UTC: INFO: QC.py(365): Changed (4/723) 3 4 449 721 to QC_PROBABLY_BAD because raw temperature spikes 20:26:53 11 Apr 2017 UTC: INFO: QC.py(377): Changed (2/723) 722 723 to QC_BAD because raw salinity below bound 20:26:53 11 Apr 2017 UTC: INFO: QC.py(408): Changed (2/723) 449 450 to QC_PROBABLY_BAD because raw conductivity spikes 20:26:53 11 Apr 2017 UTC: INFO: QC.py(180): Changed (4/723) 3 4 449 721 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 20:26:53 11 Apr 2017 UTC: INFO: QC.py(180): Changed (1/723) 450 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 20:26:53 11 Apr 2017 UTC: INFO: QC.py(180): Changed (1/723) 721 to QC_BAD because changed raw cond implies changed raw salinity 20:26:53 11 Apr 2017 UTC: INFO: QC.py(365): Changed (4/723) 3 4 449 721 to QC_INTERPOLATED because temperature spikes 20:26:53 11 Apr 2017 UTC: INFO: QC.py(377): Changed (2/723) 722 723 to QC_BAD because salinity below bound 20:26:53 11 Apr 2017 UTC: INFO: QC.py(408): Changed (2/723) 449 450 to QC_INTERPOLATED because conductivity spikes 20:26:53 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/723) 266:270 to QC_BAD because slow apogee CT flow 20:26:53 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/723) 1:6 to QC_BAD because prior to dive start 20:26:53 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/723) 1:6 266:270 721:723 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 20:26:53 11 Apr 2017 UTC: INFO: QC.py(180): Changed (14/723) 1:6 266:270 721:723 to QC_BAD because changed corrected salin implies changed speed 20:26:54 11 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 20:26:54 11 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 553 interp_salinity data_points in_between 133 167 % suspect thermal-inertia points 138 20:26:54 11 Apr 2017 UTC: INFO: QC.py(180): Changed (1/723) 449 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 20:26:54 11 Apr 2017 UTC: INFO: QC.py(180): Changed (1/723) 450 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 20:26:54 11 Apr 2017 UTC: INFO: QC.py(180): Changed (1/723) 449 to QC_INTERPOLATED because changed corrected temp implies changed speed 20:26:54 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.98 cm/s 20:26:54 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.21 cm/s 20:26:54 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 20:26:54 11 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (208/723) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 20:26:54 11 Apr 2017 UTC: INFO: QC.py(180): Changed (4/723) 3 4 449 721 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 20:26:54 11 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (208/723) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 20:26:54 11 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/723) 717 719 to QC_BAD because bad aa4330 oyxgen 20:26:54 11 Apr 2017 UTC: INFO: QC.py(180): Changed (4/723) 3 4 449 721 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 20:26:54 11 Apr 2017 UTC: INFO: QC.py(180): Changed (14/723) 1:6 266:270 721:723 to QC_BAD because changed salinity implies changed optode oxygen 20:26:54 11 Apr 2017 UTC: INFO: QC.py(180): Changed (1/723) 450 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 20:26:54 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 20:26:54 11 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 20:26:54 11 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 20:26:55 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 553: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.94% reduction 20:26:55 11 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.553 20:26:55 11 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:26:55 11 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:26:55 11 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:26:56 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 20:26:56 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 20:31:44 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 20:31:46 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 20:31:46 11 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 20:32:51 11 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:32:51 11 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:32:51 11 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:32:51 11 Apr 2017 UTC /home/sg626/p6260553.log /home/sg626/p6260553.eng /home/sg626/p6260553.asc /home/sg626/p6260553.pro /home/sg626/p6260553.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 20:32:51 11 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:32:51 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:32:51 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:32:51 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:32:51 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:32:51 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:32:51 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:32:51 11 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:32:51 11 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:32:51 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:32:51 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:32:51 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:32:51 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:32:51 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:32:51 11 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:32:51 11 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:32:51 11 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:32:51 11 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:32:51 11 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:32:51 11 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:32:51 11 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:32:51 11 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:32:51 11 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:32:51 11 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 20:32:51 11 Apr 2017 UTC 00:27:54 12 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 11342 00:27:54 12 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:31:24 12 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 11601 00:31:24 12 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:31:24 12 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:31:24 12 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:31:24 12 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:31:24 12 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170411143123 ] 00:31:24 12 Apr 2017 UTC: INFO: Base.py(1333): PID:11608 00:31:24 12 Apr 2017 UTC: INFO: Base.py(1375): Started processing 00:31:24 12 Apr 2017 UTC 00:31:24 12 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:31:26 12 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:31:26 12 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:31:26 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:31:26 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:554 calls_made:1 call_cycle:0 00:31:26 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:31:26 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:554 calls_made:1 call_cycle:0 00:31:26 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:31:26 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:554 calls_made:1 call_cycle:0 00:31:26 12 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:554 calls_made:1 call_cycle:0 2232.9170 -15801.9930 04/12/17 00:25:30 UTC) to sdrifter@soest.hawaii.edu 00:31:26 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:554 calls_made:1 call_cycle:0 00:31:26 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:31:26 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:554 calls_made:1 call_cycle:0 00:31:26 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:31:26 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:554 calls_made:1 call_cycle:0 00:31:26 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:31:26 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:554 calls_made:1 call_cycle:0 00:31:26 12 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:31:26 12 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:31:35 12 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:31:36 12 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:31:36 12 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:31:36 12 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:31:36 12 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:31:36 12 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:31:41 12 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0554lz 00:31:41 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0554lz.x00 00:31:41 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0554lz.x01 00:31:41 12 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0554lz.r in process_file_group 00:31:41 12 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260554.log 00:31:41 12 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:31:41 12 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0554dz 00:31:41 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0554dz.x00 00:31:41 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0554dz.x01 00:31:41 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0554dz.x02 00:31:41 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0554dz.x03 00:31:41 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0554dz.x04 00:31:41 12 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0554dz.r in process_file_group 00:31:42 12 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [554] 00:31:42 12 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [554] 00:31:42 12 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260554) for profiles 00:31:42 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 00:31:42 12 Apr 2017 UTC: INFO: QC.py(365): Changed (3/714) 2:4 to QC_PROBABLY_BAD because raw temperature spikes 00:31:42 12 Apr 2017 UTC: INFO: QC.py(408): Changed (1/714) 83 to QC_PROBABLY_BAD because raw conductivity spikes 00:31:42 12 Apr 2017 UTC: INFO: QC.py(180): Changed (3/714) 2:4 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:31:42 12 Apr 2017 UTC: INFO: QC.py(180): Changed (1/714) 83 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 00:31:42 12 Apr 2017 UTC: INFO: QC.py(365): Changed (3/714) 2:4 to QC_INTERPOLATED because temperature spikes 00:31:42 12 Apr 2017 UTC: INFO: QC.py(408): Changed (1/714) 83 to QC_INTERPOLATED because conductivity spikes 00:31:42 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/714) 265:269 to QC_BAD because slow apogee CT flow 00:31:42 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/714) 1:6 to QC_BAD because prior to dive start 00:31:42 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/714) 1:6 265:269 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:31:42 12 Apr 2017 UTC: INFO: QC.py(180): Changed (11/714) 1:6 265:269 to QC_BAD because changed corrected salin implies changed speed 00:31:43 12 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:31:43 12 Apr 2017 UTC: INFO: QC.py(180): Changed (1/714) 83 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 00:31:43 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.13 cm/s 00:31:43 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.24 cm/s 00:31:43 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:31:43 12 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (213/714) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:31:43 12 Apr 2017 UTC: INFO: QC.py(180): Changed (3/714) 2:4 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:31:43 12 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (213/714) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 00:31:43 12 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/714) 708 710 to QC_BAD because bad aa4330 oyxgen 00:31:43 12 Apr 2017 UTC: INFO: QC.py(180): Changed (3/714) 2:4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:31:43 12 Apr 2017 UTC: INFO: QC.py(180): Changed (11/714) 1:6 265:269 to QC_BAD because changed salinity implies changed optode oxygen 00:31:43 12 Apr 2017 UTC: INFO: QC.py(180): Changed (1/714) 83 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 00:31:43 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:31:43 12 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:31:43 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 00:31:43 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 554: Data set size for profile, binned and kkyy files reduced by 11 points, a 1.54% reduction 00:31:43 12 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.554 00:31:43 12 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:31:43 12 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:31:43 12 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:31:44 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 00:31:44 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 00:36:29 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 00:36:31 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 00:36:31 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 00:37:36 12 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:37:36 12 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:37:36 12 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:37:36 12 Apr 2017 UTC /home/sg626/p6260554.log /home/sg626/p6260554.eng /home/sg626/p6260554.asc /home/sg626/p6260554.pro /home/sg626/p6260554.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 00:37:36 12 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:37:36 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:37:36 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:37:36 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:37:36 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:37:36 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:37:36 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:37:36 12 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:37:36 12 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:37:36 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:37:36 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:37:36 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:37:36 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:37:36 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:37:36 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:37:36 12 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:37:36 12 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:37:36 12 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:37:36 12 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:37:36 12 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:37:36 12 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:37:36 12 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:37:36 12 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:37:36 12 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 00:37:36 12 Apr 2017 UTC 04:23:18 12 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 18572 04:23:18 12 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:26:36 12 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 18706 04:26:36 12 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:26:36 12 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:26:36 12 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:26:36 12 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:26:36 12 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170411182635 ] 04:26:36 12 Apr 2017 UTC: INFO: Base.py(1333): PID:18714 04:26:36 12 Apr 2017 UTC: INFO: Base.py(1375): Started processing 04:26:36 12 Apr 2017 UTC 04:26:36 12 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:26:38 12 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:26:38 12 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:26:38 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:26:38 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:555 calls_made:1 call_cycle:0 04:26:38 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:26:38 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:555 calls_made:1 call_cycle:0 04:26:38 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:26:38 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:555 calls_made:1 call_cycle:0 04:26:38 12 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:555 calls_made:1 call_cycle:0 2232.7600 -15800.8850 04/12/17 04:20:50 UTC) to sdrifter@soest.hawaii.edu 04:26:38 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:555 calls_made:1 call_cycle:0 04:26:38 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:26:38 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:555 calls_made:1 call_cycle:0 04:26:38 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:26:38 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:555 calls_made:1 call_cycle:0 04:26:38 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:26:38 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:555 calls_made:1 call_cycle:0 04:26:38 12 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:26:38 12 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:26:47 12 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:26:48 12 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:26:48 12 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:26:48 12 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:26:48 12 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:26:48 12 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:26:53 12 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0555lz 04:26:53 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0555lz.x00 04:26:53 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0555lz.x01 04:26:53 12 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0555lz.r in process_file_group 04:26:53 12 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260555.log 04:26:53 12 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:26:53 12 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0555dz 04:26:53 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0555dz.x00 04:26:53 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0555dz.x01 04:26:53 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0555dz.x02 04:26:53 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0555dz.x03 04:26:53 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0555dz.x04 04:26:53 12 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0555dz.r in process_file_group 04:26:53 12 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [555] 04:26:53 12 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [555] 04:26:54 12 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260555) for profiles 04:26:54 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 04:26:54 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/688) 687 688 to QC_BAD because CT out of water 04:26:54 12 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.118m) 04:26:54 12 Apr 2017 UTC: INFO: QC.py(365): Changed (4/688) 2:4 687 to QC_PROBABLY_BAD because raw temperature spikes 04:26:54 12 Apr 2017 UTC: INFO: QC.py(377): Changed (1/688) 687 to QC_BAD because raw salinity below bound 04:26:54 12 Apr 2017 UTC: INFO: QC.py(180): Changed (3/688) 2:4 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:26:54 12 Apr 2017 UTC: INFO: QC.py(180): Changed (1/688) 688 to QC_BAD because changed raw cond implies changed raw salinity 04:26:54 12 Apr 2017 UTC: INFO: QC.py(365): Changed (4/688) 2:4 687 to QC_INTERPOLATED because temperature spikes 04:26:54 12 Apr 2017 UTC: INFO: QC.py(377): Changed (1/688) 687 to QC_BAD because salinity below bound 04:26:54 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/688) 274:278 to QC_BAD because slow apogee CT flow 04:26:54 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/688) 1:6 to QC_BAD because prior to dive start 04:26:54 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/688) 1:6 274:278 687 688 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:26:54 12 Apr 2017 UTC: INFO: QC.py(180): Changed (13/688) 1:6 274:278 687 688 to QC_BAD because changed corrected salin implies changed speed 04:26:55 12 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:26:55 12 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 555 interp_salinity data_points in_between 389 425 % suspect thermal-inertia points 412 413 04:26:55 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.58 cm/s 04:26:55 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.16 cm/s 04:26:55 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:26:55 12 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (207/688) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:26:55 12 Apr 2017 UTC: INFO: QC.py(180): Changed (4/688) 2:4 687 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:26:55 12 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (207/688) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 04:26:55 12 Apr 2017 UTC: INFO: QC.py(180): Changed (4/688) 2:4 687 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:26:55 12 Apr 2017 UTC: INFO: QC.py(180): Changed (13/688) 1:6 274:278 687 688 to QC_BAD because changed salinity implies changed optode oxygen 04:26:55 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:26:55 12 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:26:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 04:26:55 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 555: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.89% reduction 04:26:55 12 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.555 04:26:55 12 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:26:55 12 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:26:55 12 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:26:55 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 04:26:55 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 04:31:39 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 04:31:41 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 04:31:41 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 04:32:45 12 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:32:45 12 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:32:45 12 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:32:45 12 Apr 2017 UTC /home/sg626/p6260555.log /home/sg626/p6260555.eng /home/sg626/p6260555.asc /home/sg626/p6260555.pro /home/sg626/p6260555.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 04:32:45 12 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:32:45 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:32:45 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:32:45 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:32:45 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:32:45 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:32:45 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:32:45 12 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:32:45 12 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:32:45 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:32:45 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:32:45 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:32:45 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:32:45 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:32:45 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:32:45 12 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:32:45 12 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:32:45 12 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:32:45 12 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:32:45 12 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:32:45 12 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:32:45 12 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:32:45 12 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:32:45 12 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 04:32:45 12 Apr 2017 UTC 08:25:22 12 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 26148 08:25:22 12 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:28:37 12 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 26270 08:28:37 12 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:28:37 12 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:28:37 12 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:28:37 12 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:28:37 12 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170411222836 ] 08:28:37 12 Apr 2017 UTC: INFO: Base.py(1333): PID:26278 08:28:37 12 Apr 2017 UTC: INFO: Base.py(1375): Started processing 08:28:37 12 Apr 2017 UTC 08:28:37 12 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:28:38 12 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:28:38 12 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:28:38 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:28:38 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:556 calls_made:1 call_cycle:0 08:28:38 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:28:38 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:556 calls_made:1 call_cycle:0 08:28:38 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:28:38 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:556 calls_made:1 call_cycle:0 08:28:38 12 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:556 calls_made:1 call_cycle:0 2233.0660 -15800.7960 04/12/17 08:22:54 UTC) to sdrifter@soest.hawaii.edu 08:28:38 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:556 calls_made:1 call_cycle:0 08:28:38 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:28:38 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:556 calls_made:1 call_cycle:0 08:28:38 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:28:38 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:556 calls_made:1 call_cycle:0 08:28:38 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:28:38 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:556 calls_made:1 call_cycle:0 08:28:38 12 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:28:38 12 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:28:47 12 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:28:49 12 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:28:49 12 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:28:49 12 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:28:49 12 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:28:49 12 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:28:54 12 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0556lz 08:28:54 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0556lz.x00 08:28:54 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0556lz.x01 08:28:54 12 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0556lz.r in process_file_group 08:28:54 12 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260556.log 08:28:54 12 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:28:54 12 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0556dz 08:28:54 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0556dz.x00 08:28:54 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0556dz.x01 08:28:54 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0556dz.x02 08:28:54 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0556dz.x03 08:28:54 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0556dz.x04 08:28:54 12 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0556dz.r in process_file_group 08:28:54 12 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [556] 08:28:54 12 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [556] 08:28:54 12 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260556) for profiles 08:28:54 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:28:55 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/721) 719:721 to QC_BAD because CT out of water 08:28:55 12 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.108m) 08:28:55 12 Apr 2017 UTC: INFO: QC.py(365): Changed (1/721) 720 to QC_PROBABLY_BAD because raw temperature spikes 08:28:55 12 Apr 2017 UTC: INFO: QC.py(377): Changed (1/721) 720 to QC_BAD because raw salinity below bound 08:28:55 12 Apr 2017 UTC: INFO: QC.py(180): Changed (2/721) 719 721 to QC_BAD because changed raw cond implies changed raw salinity 08:28:55 12 Apr 2017 UTC: INFO: QC.py(365): Changed (1/721) 720 to QC_INTERPOLATED because temperature spikes 08:28:55 12 Apr 2017 UTC: INFO: QC.py(377): Changed (1/721) 720 to QC_BAD because salinity below bound 08:28:55 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/721) 270:274 to QC_BAD because slow apogee CT flow 08:28:55 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/721) 1:6 to QC_BAD because prior to dive start 08:28:55 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/721) 1:6 270:274 719:721 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:28:55 12 Apr 2017 UTC: INFO: QC.py(180): Changed (14/721) 1:6 270:274 719:721 to QC_BAD because changed corrected salin implies changed speed 08:28:55 12 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:28:55 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.77 cm/s 08:28:55 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.94 cm/s 08:28:55 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:28:55 12 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (207/721) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:28:55 12 Apr 2017 UTC: INFO: QC.py(180): Changed (1/721) 720 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:28:55 12 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (207/721) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:28:55 12 Apr 2017 UTC: INFO: QC.py(180): Changed (1/721) 720 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:28:55 12 Apr 2017 UTC: INFO: QC.py(180): Changed (14/721) 1:6 270:274 719:721 to QC_BAD because changed salinity implies changed optode oxygen 08:28:55 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:28:55 12 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:28:55 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 08:28:56 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 556: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.94% reduction 08:28:56 12 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.556 08:28:56 12 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:28:56 12 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:28:56 12 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:28:56 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 08:28:56 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 08:33:45 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 08:33:47 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 08:33:47 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 08:34:52 12 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:34:52 12 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:34:52 12 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:34:52 12 Apr 2017 UTC /home/sg626/p6260556.log /home/sg626/p6260556.eng /home/sg626/p6260556.asc /home/sg626/p6260556.pro /home/sg626/p6260556.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 08:34:52 12 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:34:52 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:34:52 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:34:52 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:34:52 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:34:52 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:34:52 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:34:52 12 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:34:52 12 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:34:52 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:34:52 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:34:52 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:34:52 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:34:52 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:34:52 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:34:52 12 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:34:52 12 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:34:52 12 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:34:52 12 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:34:52 12 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:34:52 12 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:34:52 12 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:34:52 12 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:34:52 12 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 08:34:52 12 Apr 2017 UTC 12:19:30 12 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 1733 12:19:30 12 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:22:48 12 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 2039 12:22:48 12 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:22:48 12 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:22:48 12 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:22:48 12 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:22:48 12 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170412022248 ] 12:22:48 12 Apr 2017 UTC: INFO: Base.py(1333): PID:2047 12:22:49 12 Apr 2017 UTC: INFO: Base.py(1375): Started processing 12:22:49 12 Apr 2017 UTC 12:22:49 12 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:22:50 12 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:22:50 12 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:22:50 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:22:50 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:557 calls_made:1 call_cycle:0 12:22:50 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:22:50 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:557 calls_made:1 call_cycle:0 12:22:50 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:22:50 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:557 calls_made:1 call_cycle:0 12:22:50 12 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:557 calls_made:1 call_cycle:0 2233.0120 -15800.6840 04/12/17 12:16:53 UTC) to sdrifter@soest.hawaii.edu 12:22:50 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:557 calls_made:1 call_cycle:0 12:22:50 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:22:50 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:557 calls_made:1 call_cycle:0 12:22:50 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:22:50 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:557 calls_made:1 call_cycle:0 12:22:50 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:22:50 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:557 calls_made:1 call_cycle:0 12:22:50 12 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:22:50 12 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:22:59 12 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:23:01 12 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:23:01 12 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:23:01 12 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:23:01 12 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:23:01 12 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:23:06 12 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0557lz 12:23:06 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0557lz.x00 12:23:06 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0557lz.x01 12:23:06 12 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0557lz.r in process_file_group 12:23:06 12 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260557.log 12:23:06 12 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:23:06 12 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0557dz 12:23:06 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0557dz.x00 12:23:06 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0557dz.x01 12:23:06 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0557dz.x02 12:23:06 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0557dz.x03 12:23:06 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0557dz.x04 12:23:06 12 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0557dz.r in process_file_group 12:23:06 12 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [557] 12:23:06 12 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [557] 12:23:06 12 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260557) for profiles 12:23:06 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 12:23:06 12 Apr 2017 UTC: INFO: QC.py(365): Changed (1/710) 4 to QC_PROBABLY_BAD because raw temperature spikes 12:23:06 12 Apr 2017 UTC: INFO: QC.py(180): Changed (1/710) 4 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 12:23:06 12 Apr 2017 UTC: INFO: QC.py(365): Changed (1/710) 4 to QC_INTERPOLATED because temperature spikes 12:23:06 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/710) 261:265 to QC_BAD because slow apogee CT flow 12:23:06 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/710) 1:6 to QC_BAD because prior to dive start 12:23:06 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/710) 1:6 261:265 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:23:06 12 Apr 2017 UTC: INFO: QC.py(180): Changed (11/710) 1:6 261:265 to QC_BAD because changed corrected salin implies changed speed 12:23:07 12 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:23:07 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.58 cm/s 12:23:07 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.17 cm/s 12:23:07 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:23:07 12 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (199/710) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:23:07 12 Apr 2017 UTC: INFO: QC.py(180): Changed (1/710) 4 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 12:23:07 12 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (199/710) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 12:23:07 12 Apr 2017 UTC: INFO: QC.py(180): Changed (1/710) 4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 12:23:07 12 Apr 2017 UTC: INFO: QC.py(180): Changed (11/710) 1:6 261:265 to QC_BAD because changed salinity implies changed optode oxygen 12:23:07 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:23:07 12 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:23:07 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 12:23:08 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 557: Data set size for profile, binned and kkyy files reduced by 11 points, a 1.55% reduction 12:23:08 12 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.557 12:23:08 12 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:23:08 12 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:23:08 12 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:23:08 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 12:23:08 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 12:27:55 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 12:27:57 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 12:27:57 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 12:29:02 12 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:29:02 12 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:29:02 12 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 12:29:02 12 Apr 2017 UTC /home/sg626/p6260557.log /home/sg626/p6260557.eng /home/sg626/p6260557.asc /home/sg626/p6260557.pro /home/sg626/p6260557.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 12:29:02 12 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:29:02 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:29:02 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:29:02 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:29:02 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:29:02 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:29:02 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:29:02 12 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:29:02 12 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:29:02 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:29:02 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:29:02 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:29:02 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:29:02 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:29:02 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:29:02 12 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:29:02 12 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 12:29:02 12 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 12:29:02 12 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 12:29:02 12 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 12:29:02 12 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:29:02 12 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:29:02 12 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:29:02 12 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 12:29:02 12 Apr 2017 UTC 16:07:08 12 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 9402 16:07:08 12 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:10:20 12 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 9666 16:10:20 12 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:10:20 12 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:10:20 12 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:10:20 12 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:10:20 12 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170412061019 ] 16:10:20 12 Apr 2017 UTC: INFO: Base.py(1333): PID:9674 16:10:20 12 Apr 2017 UTC: INFO: Base.py(1375): Started processing 16:10:20 12 Apr 2017 UTC 16:10:20 12 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:10:21 12 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:10:21 12 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:10:21 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:10:21 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:558 calls_made:1 call_cycle:0 16:10:21 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:10:21 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:558 calls_made:1 call_cycle:0 16:10:21 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:10:21 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:558 calls_made:1 call_cycle:0 16:10:21 12 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:558 calls_made:1 call_cycle:0 2233.0190 -15800.3920 04/12/17 16:04:30 UTC) to sdrifter@soest.hawaii.edu 16:10:22 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:558 calls_made:1 call_cycle:0 16:10:22 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:10:22 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:558 calls_made:1 call_cycle:0 16:10:22 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:10:22 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:558 calls_made:1 call_cycle:0 16:10:22 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:10:22 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:558 calls_made:1 call_cycle:0 16:10:22 12 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:10:22 12 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:10:31 12 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:10:32 12 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:10:32 12 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:10:32 12 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:10:32 12 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:10:32 12 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:10:37 12 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0558lz 16:10:37 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0558lz.x00 16:10:37 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0558lz.x01 16:10:37 12 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0558lz.r in process_file_group 16:10:37 12 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260558.log 16:10:37 12 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:10:37 12 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0558dz 16:10:37 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0558dz.x00 16:10:37 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0558dz.x01 16:10:37 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0558dz.x02 16:10:37 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0558dz.x03 16:10:37 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0558dz.x04 16:10:37 12 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0558dz.r in process_file_group 16:10:38 12 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [558] 16:10:38 12 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [558] 16:10:38 12 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260558) for profiles 16:10:38 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:10:38 12 Apr 2017 UTC: INFO: QC.py(365): Changed (2/698) 2 542 to QC_PROBABLY_BAD because raw temperature spikes 16:10:38 12 Apr 2017 UTC: INFO: QC.py(408): Changed (2/698) 399 697 to QC_PROBABLY_BAD because raw conductivity spikes 16:10:38 12 Apr 2017 UTC: INFO: QC.py(180): Changed (2/698) 2 542 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:10:38 12 Apr 2017 UTC: INFO: QC.py(180): Changed (2/698) 399 697 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 16:10:38 12 Apr 2017 UTC: INFO: QC.py(365): Changed (2/698) 2 542 to QC_INTERPOLATED because temperature spikes 16:10:38 12 Apr 2017 UTC: INFO: QC.py(408): Changed (2/698) 399 697 to QC_INTERPOLATED because conductivity spikes 16:10:38 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/698) 246:250 to QC_BAD because slow apogee CT flow 16:10:38 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/698) 1:6 to QC_BAD because prior to dive start 16:10:38 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (3/698) 696:698 to QC_BAD because end of climb 16:10:38 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/698) 1:6 246:250 696:698 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:10:38 12 Apr 2017 UTC: INFO: QC.py(180): Changed (14/698) 1:6 246:250 696:698 to QC_BAD because changed corrected salin implies changed speed 16:10:39 12 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:10:39 12 Apr 2017 UTC: INFO: QC.py(180): Changed (1/698) 542 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 16:10:39 12 Apr 2017 UTC: INFO: QC.py(180): Changed (1/698) 399 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 16:10:39 12 Apr 2017 UTC: INFO: QC.py(180): Changed (1/698) 542 to QC_INTERPOLATED because changed corrected temp implies changed speed 16:10:39 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.52 cm/s 16:10:39 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.45 cm/s 16:10:39 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:10:39 12 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (191/698) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:10:39 12 Apr 2017 UTC: INFO: QC.py(180): Changed (2/698) 2 542 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:10:39 12 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (191/698) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:10:39 12 Apr 2017 UTC: INFO: QC.py(180): Changed (2/698) 2 542 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:10:39 12 Apr 2017 UTC: INFO: QC.py(180): Changed (14/698) 1:6 246:250 696:698 to QC_BAD because changed salinity implies changed optode oxygen 16:10:39 12 Apr 2017 UTC: INFO: QC.py(180): Changed (1/698) 399 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 16:10:39 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:10:39 12 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:10:39 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:10:39 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 558: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.01% reduction 16:10:39 12 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.558 16:10:39 12 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:10:39 12 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:10:39 12 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:10:40 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:10:40 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:15:29 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 16:15:31 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:15:31 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:16:37 12 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:16:37 12 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:16:37 12 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:16:37 12 Apr 2017 UTC /home/sg626/p6260558.log /home/sg626/p6260558.eng /home/sg626/p6260558.asc /home/sg626/p6260558.pro /home/sg626/p6260558.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:16:37 12 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:16:37 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:16:37 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:16:37 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:16:37 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:16:37 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:16:37 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:16:37 12 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:16:37 12 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:16:37 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:16:37 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:16:37 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:16:37 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:16:37 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:16:37 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:16:37 12 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:16:37 12 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:16:37 12 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:16:37 12 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:16:37 12 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:16:37 12 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:16:37 12 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:16:37 12 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:16:37 12 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 16:16:37 12 Apr 2017 UTC 20:06:27 12 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 17049 20:06:27 12 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:09:39 12 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 17159 20:09:39 12 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:09:39 12 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:09:39 12 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:09:39 12 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:09:39 12 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170412100939 ] 20:09:39 12 Apr 2017 UTC: INFO: Base.py(1333): PID:17169 20:09:39 12 Apr 2017 UTC: INFO: Base.py(1375): Started processing 20:09:39 12 Apr 2017 UTC 20:09:39 12 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:09:41 12 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:09:41 12 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:09:41 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:09:41 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:559 calls_made:1 call_cycle:0 20:09:41 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:09:41 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:559 calls_made:1 call_cycle:0 20:09:41 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:09:41 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:559 calls_made:1 call_cycle:0 20:09:41 12 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:559 calls_made:1 call_cycle:0 2233.3560 -15800.4390 04/12/17 20:04:02 UTC) to sdrifter@soest.hawaii.edu 20:09:41 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:559 calls_made:1 call_cycle:0 20:09:41 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:09:41 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:559 calls_made:1 call_cycle:0 20:09:41 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:09:41 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:559 calls_made:1 call_cycle:0 20:09:41 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:09:41 12 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:559 calls_made:1 call_cycle:0 20:09:41 12 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:09:41 12 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:09:50 12 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:09:52 12 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:09:52 12 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:09:52 12 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:09:52 12 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:09:52 12 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:09:56 12 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0559lz 20:09:56 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0559lz.x00 20:09:56 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0559lz.x01 20:09:56 12 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0559lz.r in process_file_group 20:09:56 12 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260559.log 20:09:57 12 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:09:57 12 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0559dz 20:09:57 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0559dz.x00 20:09:57 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0559dz.x01 20:09:57 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0559dz.x02 20:09:57 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0559dz.x03 20:09:57 12 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0559dz.x04 20:09:57 12 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0559dz.r in process_file_group 20:09:57 12 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [559] 20:09:57 12 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [559] 20:09:57 12 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260559) for profiles 20:09:57 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 20:09:57 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/718) 716 717 to QC_BAD because CT out of water 20:09:57 12 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.072m) 20:09:57 12 Apr 2017 UTC: INFO: QC.py(365): Changed (2/718) 716 717 to QC_PROBABLY_BAD because raw temperature spikes 20:09:57 12 Apr 2017 UTC: INFO: QC.py(377): Changed (1/718) 716 to QC_BAD because raw salinity below bound 20:09:57 12 Apr 2017 UTC: INFO: QC.py(180): Changed (1/718) 717 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 20:09:57 12 Apr 2017 UTC: INFO: QC.py(180): Changed (1/718) 717 to QC_BAD because changed raw cond implies changed raw salinity 20:09:57 12 Apr 2017 UTC: INFO: QC.py(365): Changed (2/718) 716 717 to QC_INTERPOLATED because temperature spikes 20:09:57 12 Apr 2017 UTC: INFO: QC.py(377): Changed (1/718) 716 to QC_BAD because salinity below bound 20:09:57 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/718) 254:258 to QC_BAD because slow apogee CT flow 20:09:57 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3182): Changed (1/718) 253 to QC_BAD because stuck on the bottom 20:09:57 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/718) 1:6 to QC_BAD because prior to dive start 20:09:57 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/718) 718 to QC_BAD because end of climb 20:09:57 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/718) 1:6 253:258 716:718 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 20:09:57 12 Apr 2017 UTC: INFO: QC.py(180): Changed (15/718) 1:6 253:258 716:718 to QC_BAD because changed corrected salin implies changed speed 20:09:58 12 Apr 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 715 20:09:58 12 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 20:09:58 12 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 559 interp_salinity data_points in_between 132 163 % suspect thermal-inertia points 134 20:09:58 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.16 cm/s 20:09:58 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.38 cm/s 20:09:58 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 20:09:58 12 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (204/718) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 20:09:58 12 Apr 2017 UTC: INFO: QC.py(180): Changed (2/718) 716 717 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 20:09:58 12 Apr 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/718) 715 to QC_BAD because slow flow in SBE43 20:09:58 12 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (204/718) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 20:09:58 12 Apr 2017 UTC: INFO: QC.py(180): Changed (2/718) 716 717 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 20:09:58 12 Apr 2017 UTC: INFO: QC.py(180): Changed (15/718) 1:6 253:258 716:718 to QC_BAD because changed salinity implies changed optode oxygen 20:09:58 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 20:09:58 12 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 20:09:58 12 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 20:09:59 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 559: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.09% reduction 20:09:59 12 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.559 20:09:59 12 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:09:59 12 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:09:59 12 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:09:59 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 20:09:59 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 20:14:49 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 20:14:51 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 20:14:51 12 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 20:15:57 12 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:15:57 12 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:15:57 12 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:15:57 12 Apr 2017 UTC /home/sg626/p6260559.log /home/sg626/p6260559.eng /home/sg626/p6260559.asc /home/sg626/p6260559.pro /home/sg626/p6260559.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 20:15:57 12 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:15:57 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:15:57 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:15:57 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:15:57 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:15:57 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:15:57 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:15:57 12 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:15:57 12 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:15:57 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:15:57 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:15:57 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:15:57 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:15:57 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:15:57 12 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:15:57 12 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:15:57 12 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:15:57 12 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:15:57 12 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:15:57 12 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:15:57 12 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:15:57 12 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:15:57 12 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:15:57 12 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 20:15:57 12 Apr 2017 UTC 00:15:31 13 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 24795 00:15:31 13 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:18:51 13 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 24903 00:18:51 13 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:18:51 13 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:18:51 13 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:18:51 13 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:18:51 13 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170412141851 ] 00:18:51 13 Apr 2017 UTC: INFO: Base.py(1333): PID:24910 00:18:51 13 Apr 2017 UTC: INFO: Base.py(1375): Started processing 00:18:51 13 Apr 2017 UTC 00:18:51 13 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:18:53 13 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:18:53 13 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:18:53 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:18:53 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:560 calls_made:1 call_cycle:0 00:18:53 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:18:53 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:560 calls_made:1 call_cycle:0 00:18:53 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:18:53 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:560 calls_made:1 call_cycle:0 00:18:53 13 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:560 calls_made:1 call_cycle:0 2233.5750 -15800.4710 04/13/17 00:13:00 UTC) to sdrifter@soest.hawaii.edu 00:18:53 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:560 calls_made:1 call_cycle:0 00:18:53 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:18:53 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:560 calls_made:1 call_cycle:0 00:18:53 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:18:53 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:560 calls_made:1 call_cycle:0 00:18:53 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:18:53 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:560 calls_made:1 call_cycle:0 00:18:53 13 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:18:53 13 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:19:02 13 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:19:04 13 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:19:04 13 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:19:04 13 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:19:04 13 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:19:04 13 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:19:08 13 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0560lz 00:19:08 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0560lz.x00 00:19:08 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0560lz.x01 00:19:08 13 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0560lz.r in process_file_group 00:19:08 13 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260560.log 00:19:08 13 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:19:08 13 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0560dz 00:19:08 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0560dz.x00 00:19:08 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0560dz.x01 00:19:08 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0560dz.x02 00:19:08 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0560dz.x03 00:19:08 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0560dz.x04 00:19:08 13 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0560dz.r in process_file_group 00:19:09 13 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [560] 00:19:09 13 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [560] 00:19:09 13 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260560) for profiles 00:19:09 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 00:19:10 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/740) 738:740 to QC_BAD because CT out of water 00:19:10 13 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.067m) 00:19:10 13 Apr 2017 UTC: INFO: QC.py(365): Changed (2/740) 281 739 to QC_PROBABLY_BAD because raw temperature spikes 00:19:10 13 Apr 2017 UTC: INFO: QC.py(377): Changed (2/740) 739 740 to QC_BAD because raw salinity below bound 00:19:10 13 Apr 2017 UTC: INFO: QC.py(408): Changed (2/740) 581 620 to QC_PROBABLY_BAD because raw conductivity spikes 00:19:10 13 Apr 2017 UTC: INFO: QC.py(180): Changed (1/740) 281 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:19:10 13 Apr 2017 UTC: INFO: QC.py(180): Changed (2/740) 581 620 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 00:19:10 13 Apr 2017 UTC: INFO: QC.py(180): Changed (1/740) 738 to QC_BAD because changed raw cond implies changed raw salinity 00:19:10 13 Apr 2017 UTC: INFO: QC.py(365): Changed (2/740) 281 739 to QC_INTERPOLATED because temperature spikes 00:19:10 13 Apr 2017 UTC: INFO: QC.py(377): Changed (2/740) 739 740 to QC_BAD because salinity below bound 00:19:10 13 Apr 2017 UTC: INFO: QC.py(408): Changed (2/740) 581 620 to QC_INTERPOLATED because conductivity spikes 00:19:10 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/740) 279:283 to QC_BAD because slow apogee CT flow 00:19:10 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/740) 1:6 to QC_BAD because prior to dive start 00:19:10 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/740) 1:6 279:283 738:740 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:19:10 13 Apr 2017 UTC: INFO: QC.py(180): Changed (14/740) 1:6 279:283 738:740 to QC_BAD because changed corrected salin implies changed speed 00:19:10 13 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:19:10 13 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 560 interp_salinity data_points in_between 446 456 % suspect thermal-inertia points 453:455 00:19:10 13 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 560 interp_salinity data_points in_between 458 462 % suspect thermal-inertia points 459 00:19:10 13 Apr 2017 UTC: INFO: QC.py(180): Changed (2/740) 581 620 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 00:19:10 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.06 cm/s 00:19:10 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.34 cm/s 00:19:10 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:19:10 13 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (214/740) 153:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:19:11 13 Apr 2017 UTC: INFO: QC.py(180): Changed (2/740) 281 739 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:19:11 13 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (214/740) 153:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 00:19:11 13 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/740) 738 740 to QC_BAD because bad aa4330 oyxgen 00:19:11 13 Apr 2017 UTC: INFO: QC.py(180): Changed (2/740) 281 739 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:19:11 13 Apr 2017 UTC: INFO: QC.py(180): Changed (12/740) 1:6 279:283 739 to QC_BAD because changed salinity implies changed optode oxygen 00:19:11 13 Apr 2017 UTC: INFO: QC.py(180): Changed (2/740) 581 620 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 00:19:11 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:19:11 13 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:19:11 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 00:19:11 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 560: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.89% reduction 00:19:11 13 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.560 00:19:11 13 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:19:11 13 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:19:11 13 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:19:11 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 00:19:11 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 00:24:02 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 00:24:04 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 00:24:04 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 00:25:11 13 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:25:11 13 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:25:11 13 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:25:11 13 Apr 2017 UTC /home/sg626/p6260560.log /home/sg626/p6260560.eng /home/sg626/p6260560.asc /home/sg626/p6260560.pro /home/sg626/p6260560.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 00:25:11 13 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:25:11 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:25:11 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:25:11 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:25:11 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:25:11 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:25:11 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:25:11 13 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:25:11 13 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:25:11 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:25:11 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:25:11 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:25:11 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:25:11 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:25:11 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:25:11 13 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:25:11 13 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:25:11 13 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:25:11 13 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:25:11 13 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:25:11 13 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:25:11 13 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:25:11 13 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:25:11 13 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 00:25:11 13 Apr 2017 UTC 04:01:38 13 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 31959 04:01:39 13 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:04:56 13 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 32083 04:04:56 13 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:04:56 13 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:04:56 13 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:04:56 13 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:04:56 13 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170412180455 ] 04:04:56 13 Apr 2017 UTC: INFO: Base.py(1333): PID:32091 04:04:56 13 Apr 2017 UTC: INFO: Base.py(1375): Started processing 04:04:56 13 Apr 2017 UTC 04:04:56 13 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:04:58 13 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:04:58 13 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:04:58 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:04:58 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:561 calls_made:1 call_cycle:0 04:04:58 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:04:58 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:561 calls_made:1 call_cycle:0 04:04:58 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:04:58 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:561 calls_made:1 call_cycle:0 04:04:58 13 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:561 calls_made:1 call_cycle:0 2233.5420 -15759.7930 04/13/17 03:59:08 UTC) to sdrifter@soest.hawaii.edu 04:04:58 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:561 calls_made:1 call_cycle:0 04:04:58 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:04:58 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:561 calls_made:1 call_cycle:0 04:04:58 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:04:58 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:561 calls_made:1 call_cycle:0 04:04:58 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:04:58 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:561 calls_made:1 call_cycle:0 04:04:58 13 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:04:58 13 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:05:07 13 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:05:08 13 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:05:08 13 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:05:08 13 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:05:08 13 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:05:08 13 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:05:13 13 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0561lz 04:05:13 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0561lz.x00 04:05:13 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0561lz.x01 04:05:13 13 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0561lz.r in process_file_group 04:05:13 13 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260561.log 04:05:13 13 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:05:13 13 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0561dz 04:05:13 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0561dz.x00 04:05:13 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0561dz.x01 04:05:13 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0561dz.x02 04:05:13 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0561dz.x03 04:05:13 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0561dz.x04 04:05:13 13 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0561dz.r in process_file_group 04:05:14 13 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [561] 04:05:14 13 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [561] 04:05:14 13 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260561) for profiles 04:05:14 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 04:05:14 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (4/678) 675:678 to QC_BAD because CT out of water 04:05:14 13 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.093m) 04:05:14 13 Apr 2017 UTC: INFO: QC.py(365): Changed (3/678) 3 676 677 to QC_PROBABLY_BAD because raw temperature spikes 04:05:14 13 Apr 2017 UTC: INFO: QC.py(377): Changed (1/678) 676 to QC_BAD because raw salinity below bound 04:05:14 13 Apr 2017 UTC: INFO: QC.py(408): Changed (1/678) 2 to QC_PROBABLY_BAD because raw conductivity spikes 04:05:14 13 Apr 2017 UTC: INFO: QC.py(180): Changed (2/678) 3 677 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:05:14 13 Apr 2017 UTC: INFO: QC.py(180): Changed (1/678) 2 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 04:05:14 13 Apr 2017 UTC: INFO: QC.py(180): Changed (3/678) 675 677 678 to QC_BAD because changed raw cond implies changed raw salinity 04:05:14 13 Apr 2017 UTC: INFO: QC.py(365): Changed (3/678) 3 676 677 to QC_INTERPOLATED because temperature spikes 04:05:14 13 Apr 2017 UTC: INFO: QC.py(377): Changed (1/678) 676 to QC_BAD because salinity below bound 04:05:14 13 Apr 2017 UTC: INFO: QC.py(408): Changed (1/678) 2 to QC_INTERPOLATED because conductivity spikes 04:05:14 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/678) 245:249 to QC_BAD because slow apogee CT flow 04:05:14 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/678) 1:6 to QC_BAD because prior to dive start 04:05:14 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/678) 1:6 245:249 675:678 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:05:14 13 Apr 2017 UTC: INFO: QC.py(180): Changed (15/678) 1:6 245:249 675:678 to QC_BAD because changed corrected salin implies changed speed 04:05:15 13 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:05:15 13 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 561 interp_salinity data_points in_between 119 131 % suspect thermal-inertia points 127 04:05:15 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.80 cm/s 04:05:15 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.52 cm/s 04:05:15 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:05:15 13 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (191/678) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:05:15 13 Apr 2017 UTC: INFO: QC.py(180): Changed (3/678) 3 676 677 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:05:15 13 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (191/678) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 04:05:15 13 Apr 2017 UTC: INFO: QC.py(180): Changed (3/678) 3 676 677 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:05:15 13 Apr 2017 UTC: INFO: QC.py(180): Changed (15/678) 1:6 245:249 675:678 to QC_BAD because changed salinity implies changed optode oxygen 04:05:15 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:05:15 13 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:05:15 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 04:05:15 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 561: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.21% reduction 04:05:15 13 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.561 04:05:15 13 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:05:15 13 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:05:15 13 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:05:16 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 04:05:16 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 04:10:06 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 04:10:07 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 04:10:07 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 04:11:14 13 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:11:14 13 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:11:14 13 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:11:14 13 Apr 2017 UTC /home/sg626/p6260561.log /home/sg626/p6260561.eng /home/sg626/p6260561.asc /home/sg626/p6260561.pro /home/sg626/p6260561.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 04:11:14 13 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:11:14 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:11:14 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:11:14 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:11:14 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:11:14 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:11:14 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:11:14 13 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:11:14 13 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:11:14 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:11:14 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:11:14 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:11:14 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:11:14 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:11:14 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:11:14 13 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:11:14 13 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:11:14 13 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:11:14 13 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:11:14 13 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:11:14 13 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:11:14 13 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:11:14 13 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:11:14 13 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 04:11:14 13 Apr 2017 UTC 07:59:22 13 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 6819 07:59:22 13 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:02:34 13 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 7247 08:02:34 13 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:02:34 13 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:02:34 13 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:02:34 13 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:02:34 13 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170412220233 ] 08:02:34 13 Apr 2017 UTC: INFO: Base.py(1333): PID:7255 08:02:34 13 Apr 2017 UTC: INFO: Base.py(1375): Started processing 08:02:34 13 Apr 2017 UTC 08:02:34 13 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:02:35 13 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:02:35 13 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:02:35 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:02:35 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:562 calls_made:1 call_cycle:0 08:02:35 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:02:35 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:562 calls_made:1 call_cycle:0 08:02:35 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:02:35 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:562 calls_made:1 call_cycle:0 08:02:35 13 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:562 calls_made:1 call_cycle:0 2233.9350 -15800.8480 04/13/17 07:57:00 UTC) to sdrifter@soest.hawaii.edu 08:02:35 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:562 calls_made:1 call_cycle:0 08:02:35 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:02:35 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:562 calls_made:1 call_cycle:0 08:02:35 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:02:35 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:562 calls_made:1 call_cycle:0 08:02:35 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:02:35 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:562 calls_made:1 call_cycle:0 08:02:35 13 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:02:35 13 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:02:44 13 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:02:46 13 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:02:46 13 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:02:46 13 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:02:46 13 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:02:46 13 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:02:51 13 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0562lz 08:02:51 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0562lz.x00 08:02:51 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0562lz.x01 08:02:51 13 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0562lz.r in process_file_group 08:02:51 13 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260562.log 08:02:51 13 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:02:51 13 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0562dz 08:02:51 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0562dz.x00 08:02:51 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0562dz.x01 08:02:51 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0562dz.x02 08:02:51 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0562dz.x03 08:02:51 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0562dz.x04 08:02:51 13 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0562dz.r in process_file_group 08:02:51 13 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [562] 08:02:51 13 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [562] 08:02:52 13 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260562) for profiles 08:02:52 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:02:52 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/713) 711 713 to QC_BAD because CT out of water 08:02:52 13 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.142m) 08:02:52 13 Apr 2017 UTC: INFO: QC.py(365): Changed (4/713) 2 4 5 712 to QC_PROBABLY_BAD because raw temperature spikes 08:02:52 13 Apr 2017 UTC: INFO: QC.py(377): Changed (2/713) 712 713 to QC_BAD because raw salinity below bound 08:02:52 13 Apr 2017 UTC: INFO: QC.py(180): Changed (3/713) 2 4 5 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:02:52 13 Apr 2017 UTC: INFO: QC.py(180): Changed (1/713) 711 to QC_BAD because changed raw cond implies changed raw salinity 08:02:52 13 Apr 2017 UTC: INFO: QC.py(365): Changed (4/713) 2 4 5 712 to QC_INTERPOLATED because temperature spikes 08:02:52 13 Apr 2017 UTC: INFO: QC.py(377): Changed (2/713) 712 713 to QC_BAD because salinity below bound 08:02:52 13 Apr 2017 UTC: INFO: QC.py(388): Changed (1/713) 712 to QC_BAD because bad salinity indicates conductivity issues 08:02:52 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/713) 262:266 to QC_BAD because slow apogee CT flow 08:02:52 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/713) 1:6 to QC_BAD because prior to dive start 08:02:52 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/713) 710 to QC_BAD because end of climb 08:02:52 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/713) 1:6 262:266 710:713 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:02:52 13 Apr 2017 UTC: INFO: QC.py(180): Changed (15/713) 1:6 262:266 710:713 to QC_BAD because changed corrected salin implies changed speed 08:02:52 13 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:02:52 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.26 cm/s 08:02:52 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.03 cm/s 08:02:52 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:02:53 13 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (203/713) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:02:53 13 Apr 2017 UTC: INFO: QC.py(180): Changed (4/713) 2 4 5 712 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:02:53 13 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (203/713) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:02:53 13 Apr 2017 UTC: INFO: QC.py(180): Changed (4/713) 2 4 5 712 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:02:53 13 Apr 2017 UTC: INFO: QC.py(180): Changed (15/713) 1:6 262:266 710:713 to QC_BAD because changed salinity implies changed optode oxygen 08:02:53 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:02:53 13 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:02:53 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 08:02:53 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 562: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.10% reduction 08:02:53 13 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.562 08:02:53 13 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:02:53 13 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:02:53 13 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:02:53 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 08:02:53 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 08:07:41 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 08:07:43 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 08:07:43 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 08:08:49 13 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:08:49 13 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:08:49 13 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:08:49 13 Apr 2017 UTC /home/sg626/p6260562.log /home/sg626/p6260562.eng /home/sg626/p6260562.asc /home/sg626/p6260562.pro /home/sg626/p6260562.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 08:08:49 13 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:08:49 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:08:49 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:08:49 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:08:49 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:08:49 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:08:49 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:08:49 13 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:08:49 13 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:08:49 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:08:49 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:08:49 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:08:49 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:08:49 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:08:49 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:08:49 13 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:08:49 13 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:08:49 13 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:08:49 13 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:08:49 13 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:08:49 13 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:08:49 13 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:08:49 13 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:08:49 13 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 08:08:49 13 Apr 2017 UTC 12:02:03 13 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 14986 12:02:03 13 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:05:20 13 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 15116 12:05:20 13 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:05:20 13 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:05:20 13 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:05:20 13 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:05:20 13 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170413020519 ] 12:05:20 13 Apr 2017 UTC: INFO: Base.py(1333): PID:15123 12:05:20 13 Apr 2017 UTC: INFO: Base.py(1375): Started processing 12:05:20 13 Apr 2017 UTC 12:05:20 13 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:05:21 13 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:05:21 13 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:05:21 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:05:21 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:563 calls_made:1 call_cycle:0 12:05:21 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:05:21 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:563 calls_made:1 call_cycle:0 12:05:21 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:05:21 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:563 calls_made:1 call_cycle:0 12:05:21 13 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:563 calls_made:1 call_cycle:0 2232.7960 -15800.3160 04/13/17 11:59:30 UTC) to sdrifter@soest.hawaii.edu 12:05:21 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:563 calls_made:1 call_cycle:0 12:05:21 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:05:21 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:563 calls_made:1 call_cycle:0 12:05:21 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:05:21 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:563 calls_made:1 call_cycle:0 12:05:21 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:05:21 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:563 calls_made:1 call_cycle:0 12:05:21 13 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:05:21 13 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:05:30 13 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:05:32 13 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:05:32 13 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:05:32 13 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:05:32 13 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:05:32 13 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:05:37 13 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0563lz 12:05:37 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0563lz.x00 12:05:37 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0563lz.x01 12:05:37 13 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0563lz.r in process_file_group 12:05:37 13 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260563.log 12:05:37 13 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:05:37 13 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0563dz 12:05:37 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0563dz.x00 12:05:37 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0563dz.x01 12:05:37 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0563dz.x02 12:05:37 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0563dz.x03 12:05:37 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0563dz.x04 12:05:37 13 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0563dz.r in process_file_group 12:05:37 13 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [563] 12:05:37 13 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [563] 12:05:38 13 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260563) for profiles 12:05:38 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 12:05:38 13 Apr 2017 UTC: INFO: QC.py(365): Changed (6/707) 5 266 459 465 600 706 to QC_PROBABLY_BAD because raw temperature spikes 12:05:38 13 Apr 2017 UTC: INFO: QC.py(408): Changed (3/707) 433 465 600 to QC_PROBABLY_BAD because raw conductivity spikes 12:05:38 13 Apr 2017 UTC: INFO: QC.py(180): Changed (6/707) 5 266 459 465 600 706 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 12:05:38 13 Apr 2017 UTC: INFO: QC.py(180): Changed (1/707) 433 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 12:05:38 13 Apr 2017 UTC: INFO: QC.py(365): Changed (6/707) 5 266 459 465 600 706 to QC_INTERPOLATED because temperature spikes 12:05:38 13 Apr 2017 UTC: INFO: QC.py(408): Changed (3/707) 433 465 600 to QC_INTERPOLATED because conductivity spikes 12:05:38 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/707) 264:268 to QC_BAD because slow apogee CT flow 12:05:38 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/707) 1:6 to QC_BAD because prior to dive start 12:05:38 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/707) 1:6 264:268 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:05:38 13 Apr 2017 UTC: INFO: QC.py(180): Changed (11/707) 1:6 264:268 to QC_BAD because changed corrected salin implies changed speed 12:05:38 13 Apr 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 707 12:05:39 13 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:05:39 13 Apr 2017 UTC: INFO: QC.py(180): Changed (4/707) 459 465 600 706 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 12:05:39 13 Apr 2017 UTC: INFO: QC.py(180): Changed (1/707) 433 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 12:05:39 13 Apr 2017 UTC: INFO: QC.py(180): Changed (4/707) 459 465 600 706 to QC_INTERPOLATED because changed corrected temp implies changed speed 12:05:39 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.84 cm/s 12:05:39 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.55 cm/s 12:05:39 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:05:39 13 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (208/707) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:05:39 13 Apr 2017 UTC: INFO: QC.py(180): Changed (6/707) 5 266 459 465 600 706 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 12:05:39 13 Apr 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/707) 707 to QC_BAD because slow flow in SBE43 12:05:39 13 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (208/707) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 12:05:39 13 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/707) 676 to QC_BAD because bad aa4330 oyxgen 12:05:39 13 Apr 2017 UTC: INFO: QC.py(180): Changed (6/707) 5 266 459 465 600 706 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 12:05:39 13 Apr 2017 UTC: INFO: QC.py(180): Changed (11/707) 1:6 264:268 to QC_BAD because changed salinity implies changed optode oxygen 12:05:39 13 Apr 2017 UTC: INFO: QC.py(180): Changed (1/707) 433 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 12:05:39 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:05:39 13 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:05:39 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 12:05:39 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 563: Data set size for profile, binned and kkyy files reduced by 11 points, a 1.56% reduction 12:05:39 13 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.563 12:05:39 13 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:05:39 13 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:05:39 13 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:05:39 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 12:05:39 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 12:10:31 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 12:10:32 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 12:10:32 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 12:11:39 13 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:11:39 13 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:11:39 13 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 12:11:39 13 Apr 2017 UTC /home/sg626/p6260563.log /home/sg626/p6260563.eng /home/sg626/p6260563.asc /home/sg626/p6260563.pro /home/sg626/p6260563.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 12:11:39 13 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:11:39 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:11:39 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:11:39 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:11:39 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:11:39 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:11:39 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:11:39 13 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:11:39 13 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:11:39 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:11:39 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:11:39 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:11:39 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:11:39 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:11:39 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:11:39 13 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:11:39 13 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 12:11:39 13 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 12:11:39 13 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 12:11:39 13 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 12:11:39 13 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:11:39 13 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:11:39 13 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:11:39 13 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 12:11:39 13 Apr 2017 UTC 15:56:41 13 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 22158 15:56:41 13 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 15:59:53 13 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 22268 15:59:53 13 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 15:59:53 13 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 15:59:53 13 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 15:59:53 13 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 15:59:53 13 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170413055953 ] 15:59:53 13 Apr 2017 UTC: INFO: Base.py(1333): PID:22276 15:59:53 13 Apr 2017 UTC: INFO: Base.py(1375): Started processing 15:59:53 13 Apr 2017 UTC 15:59:53 13 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 15:59:55 13 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 15:59:55 13 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 15:59:55 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:59:55 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:564 calls_made:1 call_cycle:0 15:59:55 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:59:55 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:564 calls_made:1 call_cycle:0 15:59:55 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:59:55 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:564 calls_made:1 call_cycle:0 15:59:55 13 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:564 calls_made:1 call_cycle:0 2233.1500 -15800.5910 04/13/17 15:53:52 UTC) to sdrifter@soest.hawaii.edu 15:59:55 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:564 calls_made:1 call_cycle:0 15:59:55 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:59:55 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:564 calls_made:1 call_cycle:0 15:59:55 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:59:55 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:564 calls_made:1 call_cycle:0 15:59:55 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:59:55 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:564 calls_made:1 call_cycle:0 15:59:55 13 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:59:55 13 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:00:04 13 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:00:06 13 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:00:06 13 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:00:06 13 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:00:06 13 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:00:06 13 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:00:11 13 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0564lz 16:00:11 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0564lz.x00 16:00:11 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0564lz.x01 16:00:11 13 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0564lz.r in process_file_group 16:00:11 13 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260564.log 16:00:11 13 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:00:11 13 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0564dz 16:00:11 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0564dz.x00 16:00:11 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0564dz.x01 16:00:11 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0564dz.x02 16:00:11 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0564dz.x03 16:00:11 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0564dz.x04 16:00:11 13 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0564dz.r in process_file_group 16:00:11 13 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [564] 16:00:11 13 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [564] 16:00:12 13 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260564) for profiles 16:00:12 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:00:12 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/724) 723 to QC_BAD because CT out of water 16:00:12 13 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.054m) 16:00:12 13 Apr 2017 UTC: INFO: QC.py(365): Changed (4/724) 2 223 396 723 to QC_PROBABLY_BAD because raw temperature spikes 16:00:12 13 Apr 2017 UTC: INFO: QC.py(408): Changed (3/724) 108 223 396 to QC_PROBABLY_BAD because raw conductivity spikes 16:00:12 13 Apr 2017 UTC: INFO: QC.py(180): Changed (4/724) 2 223 396 723 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:00:12 13 Apr 2017 UTC: INFO: QC.py(180): Changed (1/724) 108 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 16:00:12 13 Apr 2017 UTC: INFO: QC.py(180): Changed (1/724) 723 to QC_BAD because changed raw cond implies changed raw salinity 16:00:12 13 Apr 2017 UTC: INFO: QC.py(365): Changed (4/724) 2 223 396 723 to QC_INTERPOLATED because temperature spikes 16:00:12 13 Apr 2017 UTC: INFO: QC.py(408): Changed (3/724) 108 223 396 to QC_INTERPOLATED because conductivity spikes 16:00:12 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/724) 265:269 to QC_BAD because slow apogee CT flow 16:00:12 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/724) 1:6 to QC_BAD because prior to dive start 16:00:12 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/724) 724 to QC_BAD because end of climb 16:00:12 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/724) 1:6 265:269 723 724 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:00:12 13 Apr 2017 UTC: INFO: QC.py(180): Changed (13/724) 1:6 265:269 723 724 to QC_BAD because changed corrected salin implies changed speed 16:00:12 13 Apr 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 722 16:00:13 13 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:00:13 13 Apr 2017 UTC: INFO: QC.py(180): Changed (2/724) 223 396 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 16:00:13 13 Apr 2017 UTC: INFO: QC.py(180): Changed (1/724) 108 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 16:00:13 13 Apr 2017 UTC: INFO: QC.py(180): Changed (2/724) 223 396 to QC_INTERPOLATED because changed corrected temp implies changed speed 16:00:13 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.54 cm/s 16:00:13 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.02 cm/s 16:00:13 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:00:13 13 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (199/724) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:00:13 13 Apr 2017 UTC: INFO: QC.py(180): Changed (3/724) 2 396 723 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:00:13 13 Apr 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/724) 722 to QC_BAD because slow flow in SBE43 16:00:13 13 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (199/724) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:00:13 13 Apr 2017 UTC: INFO: QC.py(180): Changed (3/724) 2 396 723 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:00:13 13 Apr 2017 UTC: INFO: QC.py(180): Changed (13/724) 1:6 265:269 723 724 to QC_BAD because changed salinity implies changed optode oxygen 16:00:13 13 Apr 2017 UTC: INFO: QC.py(180): Changed (1/724) 108 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 16:00:13 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:00:13 13 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:00:13 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:00:13 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 564: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.80% reduction 16:00:13 13 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.564 16:00:13 13 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:00:13 13 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:00:13 13 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:00:13 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:00:13 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:05:04 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 16:05:06 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:05:06 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:06:12 13 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:06:12 13 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:06:12 13 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:06:12 13 Apr 2017 UTC /home/sg626/p6260564.log /home/sg626/p6260564.eng /home/sg626/p6260564.asc /home/sg626/p6260564.pro /home/sg626/p6260564.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:06:12 13 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:06:12 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:06:12 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:06:12 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:06:12 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:06:12 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:06:12 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:06:12 13 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:06:12 13 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:06:12 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:06:12 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:06:12 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:06:12 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:06:12 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:06:12 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:06:12 13 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:06:12 13 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:06:12 13 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:06:12 13 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:06:12 13 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:06:12 13 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:06:12 13 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:06:12 13 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:06:12 13 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 16:06:12 13 Apr 2017 UTC 19:55:06 13 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 29819 19:55:06 13 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:58:23 13 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 29907 19:58:23 13 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:58:23 13 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:58:23 13 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:58:23 13 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:58:23 13 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170413095822 ] 19:58:23 13 Apr 2017 UTC: INFO: Base.py(1333): PID:29915 19:58:23 13 Apr 2017 UTC: INFO: Base.py(1375): Started processing 19:58:23 13 Apr 2017 UTC 19:58:23 13 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:58:24 13 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:58:24 13 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:58:24 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:58:24 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:565 calls_made:1 call_cycle:0 19:58:24 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:58:24 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:565 calls_made:1 call_cycle:0 19:58:24 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:58:24 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:565 calls_made:1 call_cycle:0 19:58:24 13 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:565 calls_made:1 call_cycle:0 2233.4240 -15800.3430 04/13/17 19:52:30 UTC) to sdrifter@soest.hawaii.edu 19:58:24 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:565 calls_made:1 call_cycle:0 19:58:24 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:58:24 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:565 calls_made:1 call_cycle:0 19:58:24 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:58:24 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:565 calls_made:1 call_cycle:0 19:58:24 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:58:24 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:565 calls_made:1 call_cycle:0 19:58:24 13 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:58:24 13 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:58:33 13 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:58:35 13 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:58:35 13 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:58:35 13 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:58:35 13 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:58:35 13 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:58:40 13 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0565lz 19:58:40 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0565lz.x00 19:58:40 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0565lz.x01 19:58:40 13 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0565lz.r in process_file_group 19:58:40 13 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260565.log 19:58:40 13 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:58:40 13 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0565dz 19:58:40 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0565dz.x00 19:58:40 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0565dz.x01 19:58:40 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0565dz.x02 19:58:40 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0565dz.x03 19:58:40 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0565dz.x04 19:58:40 13 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0565dz.r in process_file_group 19:58:40 13 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [565] 19:58:40 13 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [565] 19:58:41 13 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260565) for profiles 19:58:41 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 19:58:41 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/692) 690:692 to QC_BAD because CT out of water 19:58:41 13 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.178m) 19:58:41 13 Apr 2017 UTC: INFO: QC.py(365): Changed (5/692) 4 125 126 263 691 to QC_PROBABLY_BAD because raw temperature spikes 19:58:41 13 Apr 2017 UTC: INFO: QC.py(377): Changed (2/692) 691 692 to QC_BAD because raw salinity below bound 19:58:41 13 Apr 2017 UTC: INFO: QC.py(408): Changed (3/692) 229 242 295 to QC_PROBABLY_BAD because raw conductivity spikes 19:58:41 13 Apr 2017 UTC: INFO: QC.py(180): Changed (4/692) 4 125 126 263 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:58:41 13 Apr 2017 UTC: INFO: QC.py(180): Changed (3/692) 229 242 295 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 19:58:41 13 Apr 2017 UTC: INFO: QC.py(180): Changed (1/692) 690 to QC_BAD because changed raw cond implies changed raw salinity 19:58:41 13 Apr 2017 UTC: INFO: QC.py(365): Changed (5/692) 4 125 126 263 691 to QC_INTERPOLATED because temperature spikes 19:58:41 13 Apr 2017 UTC: INFO: QC.py(377): Changed (2/692) 691 692 to QC_BAD because salinity below bound 19:58:41 13 Apr 2017 UTC: INFO: QC.py(408): Changed (3/692) 229 242 295 to QC_INTERPOLATED because conductivity spikes 19:58:41 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/692) 262:266 to QC_BAD because slow apogee CT flow 19:58:41 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/692) 1:6 to QC_BAD because prior to dive start 19:58:41 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/692) 1:6 262:266 690:692 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:58:41 13 Apr 2017 UTC: INFO: QC.py(180): Changed (14/692) 1:6 262:266 690:692 to QC_BAD because changed corrected salin implies changed speed 19:58:42 13 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:58:42 13 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 565 interp_salinity data_points in_between 403 418 % suspect thermal-inertia points 407 19:58:42 13 Apr 2017 UTC: INFO: QC.py(180): Changed (2/692) 125 126 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 19:58:42 13 Apr 2017 UTC: INFO: QC.py(180): Changed (3/692) 229 242 295 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 19:58:42 13 Apr 2017 UTC: INFO: QC.py(180): Changed (2/692) 125 126 to QC_INTERPOLATED because changed corrected temp implies changed speed 19:58:42 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.92 cm/s 19:58:42 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.25 cm/s 19:58:42 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:58:42 13 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (210/692) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:58:42 13 Apr 2017 UTC: INFO: QC.py(180): Changed (4/692) 4 125 126 691 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 19:58:42 13 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (210/692) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 19:58:42 13 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/692) 691 to QC_BAD because bad aa4330 oyxgen 19:58:42 13 Apr 2017 UTC: INFO: QC.py(180): Changed (3/692) 4 125 126 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 19:58:42 13 Apr 2017 UTC: INFO: QC.py(180): Changed (13/692) 1:6 262:266 690 692 to QC_BAD because changed salinity implies changed optode oxygen 19:58:42 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:58:42 13 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:58:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 19:58:42 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 565: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.02% reduction 19:58:42 13 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.565 19:58:42 13 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:58:42 13 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:58:42 13 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:58:42 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 19:58:42 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 20:03:35 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 20:03:37 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 20:03:37 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 20:04:43 13 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:04:43 13 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:04:43 13 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:04:43 13 Apr 2017 UTC /home/sg626/p6260565.log /home/sg626/p6260565.eng /home/sg626/p6260565.asc /home/sg626/p6260565.pro /home/sg626/p6260565.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 20:04:43 13 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:04:43 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:04:43 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:04:43 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:04:43 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:04:43 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:04:43 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:04:43 13 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:04:43 13 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:04:43 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:04:43 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:04:43 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:04:43 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:04:43 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:04:43 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:04:43 13 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:04:43 13 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:04:43 13 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:04:43 13 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:04:43 13 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:04:43 13 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:04:43 13 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:04:43 13 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:04:43 13 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 20:04:43 13 Apr 2017 UTC 23:44:05 13 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 4917 23:44:05 13 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 23:47:24 13 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 5013 23:47:24 13 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:47:24 13 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:47:24 13 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:47:24 13 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:47:24 13 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170413134723 ] 23:47:24 13 Apr 2017 UTC: INFO: Base.py(1333): PID:5021 23:47:24 13 Apr 2017 UTC: INFO: Base.py(1375): Started processing 23:47:24 13 Apr 2017 UTC 23:47:24 13 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:47:25 13 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:47:25 13 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:47:25 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:47:25 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:566 calls_made:1 call_cycle:0 23:47:25 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:47:25 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:566 calls_made:1 call_cycle:0 23:47:25 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:47:25 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:566 calls_made:1 call_cycle:0 23:47:25 13 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:566 calls_made:1 call_cycle:0 2233.5590 -15800.2400 04/13/17 23:41:39 UTC) to sdrifter@soest.hawaii.edu 23:47:25 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:566 calls_made:1 call_cycle:0 23:47:25 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:47:25 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:566 calls_made:1 call_cycle:0 23:47:25 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:47:25 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:566 calls_made:1 call_cycle:0 23:47:25 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:47:25 13 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:566 calls_made:1 call_cycle:0 23:47:25 13 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:47:25 13 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:47:34 13 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:47:36 13 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:47:36 13 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:47:36 13 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:47:36 13 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:47:36 13 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:47:41 13 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0566lz 23:47:41 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0566lz.x00 23:47:41 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0566lz.x01 23:47:41 13 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0566lz.r in process_file_group 23:47:41 13 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260566.log 23:47:41 13 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:47:41 13 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0566dz 23:47:41 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0566dz.x00 23:47:41 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0566dz.x01 23:47:41 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0566dz.x02 23:47:41 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0566dz.x03 23:47:41 13 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0566dz.x04 23:47:41 13 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0566dz.r in process_file_group 23:47:41 13 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [566] 23:47:41 13 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [566] 23:47:42 13 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260566) for profiles 23:47:42 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 23:47:42 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/673) 671:673 to QC_BAD because CT out of water 23:47:42 13 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.105m) 23:47:42 13 Apr 2017 UTC: INFO: QC.py(365): Changed (12/673) 2 4 220 232:235 291 381 382 532 672 to QC_PROBABLY_BAD because raw temperature spikes 23:47:42 13 Apr 2017 UTC: INFO: QC.py(377): Changed (2/673) 672 673 to QC_BAD because raw salinity below bound 23:47:42 13 Apr 2017 UTC: INFO: QC.py(408): Changed (10/673) 64 220 232:235 291 381 382 532 to QC_PROBABLY_BAD because raw conductivity spikes 23:47:42 13 Apr 2017 UTC: INFO: QC.py(180): Changed (11/673) 2 4 220 232:235 291 381 382 532 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 23:47:42 13 Apr 2017 UTC: INFO: QC.py(180): Changed (1/673) 64 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 23:47:42 13 Apr 2017 UTC: INFO: QC.py(180): Changed (1/673) 671 to QC_BAD because changed raw cond implies changed raw salinity 23:47:42 13 Apr 2017 UTC: INFO: QC.py(365): Changed (12/673) 2 4 220 232:235 291 381 382 532 672 to QC_INTERPOLATED because temperature spikes 23:47:42 13 Apr 2017 UTC: INFO: QC.py(377): Changed (2/673) 672 673 to QC_BAD because salinity below bound 23:47:42 13 Apr 2017 UTC: INFO: QC.py(408): Changed (10/673) 64 220 232:235 291 381 382 532 to QC_INTERPOLATED because conductivity spikes 23:47:42 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/673) 257:261 to QC_BAD because slow apogee CT flow 23:47:42 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/673) 1:6 to QC_BAD because prior to dive start 23:47:42 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/673) 1:6 257:261 671:673 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 23:47:42 13 Apr 2017 UTC: INFO: QC.py(180): Changed (14/673) 1:6 257:261 671:673 to QC_BAD because changed corrected salin implies changed speed 23:47:42 13 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 23:47:42 13 Apr 2017 UTC: INFO: QC.py(180): Changed (9/673) 220 232:235 291 381 382 532 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 23:47:42 13 Apr 2017 UTC: INFO: QC.py(180): Changed (1/673) 64 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 23:47:42 13 Apr 2017 UTC: INFO: QC.py(180): Changed (9/673) 220 232:235 291 381 382 532 to QC_INTERPOLATED because changed corrected temp implies changed speed 23:47:42 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.10 cm/s 23:47:42 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.21 cm/s 23:47:42 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 23:47:42 13 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (200/673) 139 140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 23:47:42 13 Apr 2017 UTC: INFO: QC.py(180): Changed (6/673) 2 4 291 381 532 672 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 23:47:42 13 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (200/673) 139 140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 23:47:42 13 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/673) 673 to QC_BAD because bad aa4330 oyxgen 23:47:42 13 Apr 2017 UTC: INFO: QC.py(180): Changed (6/673) 2 4 291 381 532 672 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 23:47:42 13 Apr 2017 UTC: INFO: QC.py(180): Changed (13/673) 1:6 257:261 671 672 to QC_BAD because changed salinity implies changed optode oxygen 23:47:42 13 Apr 2017 UTC: INFO: QC.py(180): Changed (1/673) 64 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 23:47:42 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 23:47:42 13 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 23:47:42 13 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 23:47:43 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 566: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.08% reduction 23:47:43 13 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.566 23:47:43 13 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:47:43 13 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:47:43 13 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:47:43 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 23:47:43 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 23:52:34 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 23:52:35 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 23:52:35 13 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 23:53:41 13 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:53:41 13 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:53:41 13 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:53:41 13 Apr 2017 UTC /home/sg626/p6260566.log /home/sg626/p6260566.eng /home/sg626/p6260566.asc /home/sg626/p6260566.pro /home/sg626/p6260566.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 23:53:41 13 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:53:41 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:53:41 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:53:41 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:53:41 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:53:41 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:53:41 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:53:41 13 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:53:41 13 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:53:41 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:53:41 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:53:41 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:53:41 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:53:41 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:53:41 13 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:53:41 13 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:53:41 13 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:53:41 13 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:53:41 13 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:53:41 13 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:53:41 13 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:53:41 13 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:53:41 13 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:53:41 13 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 23:53:41 13 Apr 2017 UTC 03:40:00 14 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 12242 03:40:00 14 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:43:07 14 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 12444 03:43:07 14 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:43:07 14 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:43:07 14 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:43:07 14 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:43:07 14 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170413174306 ] 03:43:07 14 Apr 2017 UTC: INFO: Base.py(1333): PID:12452 03:43:07 14 Apr 2017 UTC: INFO: Base.py(1375): Started processing 03:43:07 14 Apr 2017 UTC 03:43:07 14 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:43:08 14 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:43:08 14 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:43:08 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:43:08 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:567 calls_made:1 call_cycle:0 03:43:08 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:43:08 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:567 calls_made:1 call_cycle:0 03:43:08 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:43:08 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:567 calls_made:1 call_cycle:0 03:43:08 14 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:567 calls_made:1 call_cycle:0 2233.7490 -15800.3440 04/14/17 03:37:18 UTC) to sdrifter@soest.hawaii.edu 03:43:09 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:567 calls_made:1 call_cycle:0 03:43:09 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:43:09 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:567 calls_made:1 call_cycle:0 03:43:09 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:43:09 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:567 calls_made:1 call_cycle:0 03:43:09 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:43:09 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:567 calls_made:1 call_cycle:0 03:43:09 14 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:43:09 14 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:43:18 14 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:43:19 14 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:43:19 14 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:43:19 14 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:43:19 14 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:43:19 14 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:43:24 14 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0567lz 03:43:24 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0567lz.x00 03:43:24 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0567lz.x01 03:43:24 14 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0567lz.r in process_file_group 03:43:24 14 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260567.log 03:43:24 14 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:43:24 14 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0567dz 03:43:24 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0567dz.x00 03:43:24 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0567dz.x01 03:43:24 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0567dz.x02 03:43:24 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0567dz.x03 03:43:24 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0567dz.x04 03:43:24 14 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0567dz.r in process_file_group 03:43:25 14 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [567] 03:43:25 14 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [567] 03:43:25 14 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260567) for profiles 03:43:25 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 03:43:25 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (4/689) 686:689 to QC_BAD because CT out of water 03:43:25 14 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.188m) 03:43:25 14 Apr 2017 UTC: INFO: QC.py(365): Changed (9/689) 232 233 260 282 283 311 686:688 to QC_PROBABLY_BAD because raw temperature spikes 03:43:25 14 Apr 2017 UTC: INFO: QC.py(377): Changed (1/689) 689 to QC_BAD because raw salinity below bound 03:43:25 14 Apr 2017 UTC: INFO: QC.py(408): Changed (6/689) 2 50 232 282 283 311 to QC_PROBABLY_BAD because raw conductivity spikes 03:43:25 14 Apr 2017 UTC: INFO: QC.py(180): Changed (9/689) 232 233 260 282 283 311 686:688 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 03:43:25 14 Apr 2017 UTC: INFO: QC.py(180): Changed (2/689) 2 50 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 03:43:25 14 Apr 2017 UTC: INFO: QC.py(180): Changed (3/689) 686:688 to QC_BAD because changed raw cond implies changed raw salinity 03:43:25 14 Apr 2017 UTC: INFO: QC.py(365): Changed (9/689) 232 233 260 282 283 311 686:688 to QC_INTERPOLATED because temperature spikes 03:43:25 14 Apr 2017 UTC: INFO: QC.py(377): Changed (1/689) 689 to QC_BAD because salinity below bound 03:43:25 14 Apr 2017 UTC: INFO: QC.py(408): Changed (6/689) 2 50 232 282 283 311 to QC_INTERPOLATED because conductivity spikes 03:43:25 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/689) 258:262 to QC_BAD because slow apogee CT flow 03:43:25 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/689) 1:6 to QC_BAD because prior to dive start 03:43:25 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/689) 1:6 258:262 686:689 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:43:25 14 Apr 2017 UTC: INFO: QC.py(180): Changed (15/689) 1:6 258:262 686:689 to QC_BAD because changed corrected salin implies changed speed 03:43:26 14 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 03:43:26 14 Apr 2017 UTC: INFO: QC.py(180): Changed (5/689) 232 233 282 283 311 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 03:43:26 14 Apr 2017 UTC: INFO: QC.py(180): Changed (1/689) 50 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 03:43:26 14 Apr 2017 UTC: INFO: QC.py(180): Changed (5/689) 232 233 282 283 311 to QC_INTERPOLATED because changed corrected temp implies changed speed 03:43:26 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.96 cm/s 03:43:26 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.09 cm/s 03:43:26 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:43:26 14 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (205/689) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:43:26 14 Apr 2017 UTC: INFO: QC.py(180): Changed (4/689) 311 686:688 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:43:26 14 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (205/689) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 03:43:26 14 Apr 2017 UTC: INFO: QC.py(180): Changed (4/689) 311 686:688 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 03:43:26 14 Apr 2017 UTC: INFO: QC.py(180): Changed (15/689) 1:6 258:262 686:689 to QC_BAD because changed salinity implies changed optode oxygen 03:43:26 14 Apr 2017 UTC: INFO: QC.py(180): Changed (1/689) 50 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 03:43:26 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:43:26 14 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:43:26 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 03:43:26 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 567: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.18% reduction 03:43:26 14 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.567 03:43:26 14 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:43:26 14 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:43:26 14 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:43:27 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 03:43:27 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 03:48:17 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 03:48:19 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 03:48:19 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 03:49:25 14 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:49:25 14 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:49:25 14 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:49:25 14 Apr 2017 UTC /home/sg626/p6260567.log /home/sg626/p6260567.eng /home/sg626/p6260567.asc /home/sg626/p6260567.pro /home/sg626/p6260567.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 03:49:25 14 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:49:25 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:49:25 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:49:25 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:49:25 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:49:25 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:49:25 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:49:25 14 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:49:25 14 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:49:25 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:49:25 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:49:25 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:49:25 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:49:25 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:49:25 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:49:25 14 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:49:25 14 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:49:25 14 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:49:25 14 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:49:25 14 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:49:25 14 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:49:25 14 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:49:25 14 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:49:25 14 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 03:49:25 14 Apr 2017 UTC 07:30:11 14 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 19897 07:30:11 14 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:33:32 14 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 20021 07:33:32 14 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:33:32 14 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:33:32 14 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:33:32 14 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:33:32 14 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170413213332 ] 07:33:32 14 Apr 2017 UTC: INFO: Base.py(1333): PID:20029 07:33:32 14 Apr 2017 UTC: INFO: Base.py(1375): Started processing 07:33:32 14 Apr 2017 UTC 07:33:32 14 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:33:34 14 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:33:34 14 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:33:34 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:33:34 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:568 calls_made:1 call_cycle:0 07:33:34 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:33:34 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:568 calls_made:1 call_cycle:0 07:33:34 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:33:34 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:568 calls_made:1 call_cycle:0 07:33:34 14 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:568 calls_made:1 call_cycle:0 2233.8810 -15759.7350 04/14/17 07:27:44 UTC) to sdrifter@soest.hawaii.edu 07:33:34 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:568 calls_made:1 call_cycle:0 07:33:34 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:33:34 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:568 calls_made:1 call_cycle:0 07:33:34 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:33:34 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:568 calls_made:1 call_cycle:0 07:33:34 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:33:34 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:568 calls_made:1 call_cycle:0 07:33:34 14 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:33:34 14 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:33:43 14 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:33:45 14 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:33:45 14 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:33:45 14 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:33:45 14 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:33:45 14 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:33:50 14 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0568lz 07:33:50 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0568lz.x00 07:33:50 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0568lz.x01 07:33:50 14 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0568lz.r in process_file_group 07:33:50 14 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260568.log 07:33:50 14 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:33:50 14 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0568dz 07:33:50 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0568dz.x00 07:33:50 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0568dz.x01 07:33:50 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0568dz.x02 07:33:50 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0568dz.x03 07:33:50 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0568dz.x04 07:33:50 14 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0568dz.r in process_file_group 07:33:50 14 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [568] 07:33:50 14 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [568] 07:33:50 14 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260568) for profiles 07:33:50 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 07:33:51 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/708) 707 708 to QC_BAD because CT out of water 07:33:51 14 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.045m) 07:33:51 14 Apr 2017 UTC: INFO: QC.py(365): Changed (10/708) 2 3 229 231 232 255 272:274 455 to QC_PROBABLY_BAD because raw temperature spikes 07:33:51 14 Apr 2017 UTC: INFO: QC.py(377): Changed (1/708) 708 to QC_BAD because raw salinity below bound 07:33:51 14 Apr 2017 UTC: INFO: QC.py(408): Changed (7/708) 229 231 232 272:274 455 to QC_PROBABLY_BAD because raw conductivity spikes 07:33:51 14 Apr 2017 UTC: INFO: QC.py(180): Changed (10/708) 2 3 229 231 232 255 272:274 455 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:33:51 14 Apr 2017 UTC: INFO: QC.py(180): Changed (1/708) 707 to QC_BAD because changed raw cond implies changed raw salinity 07:33:51 14 Apr 2017 UTC: INFO: QC.py(365): Changed (10/708) 2 3 229 231 232 255 272:274 455 to QC_INTERPOLATED because temperature spikes 07:33:51 14 Apr 2017 UTC: INFO: QC.py(377): Changed (1/708) 708 to QC_BAD because salinity below bound 07:33:51 14 Apr 2017 UTC: INFO: QC.py(408): Changed (7/708) 229 231 232 272:274 455 to QC_INTERPOLATED because conductivity spikes 07:33:51 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/708) 253:257 to QC_BAD because slow apogee CT flow 07:33:51 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/708) 1:6 to QC_BAD because prior to dive start 07:33:51 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/708) 1:6 253:257 707 708 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:33:51 14 Apr 2017 UTC: INFO: QC.py(180): Changed (13/708) 1:6 253:257 707 708 to QC_BAD because changed corrected salin implies changed speed 07:33:51 14 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:33:51 14 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 568 interp_salinity data_points in_between 390 397 % suspect thermal-inertia points 391 392 07:33:51 14 Apr 2017 UTC: INFO: QC.py(180): Changed (7/708) 229 231 232 272:274 455 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 07:33:51 14 Apr 2017 UTC: INFO: QC.py(180): Changed (7/708) 229 231 232 272:274 455 to QC_INTERPOLATED because changed corrected temp implies changed speed 07:33:51 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.44 cm/s 07:33:51 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.19 cm/s 07:33:51 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:33:51 14 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (195/708) 135 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:33:51 14 Apr 2017 UTC: INFO: QC.py(180): Changed (4/708) 2 3 231 455 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:33:51 14 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (195/708) 135 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 07:33:51 14 Apr 2017 UTC: INFO: QC.py(180): Changed (4/708) 2 3 231 455 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:33:51 14 Apr 2017 UTC: INFO: QC.py(180): Changed (13/708) 1:6 253:257 707 708 to QC_BAD because changed salinity implies changed optode oxygen 07:33:51 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:33:51 14 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:33:51 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 07:33:52 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 568: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.84% reduction 07:33:52 14 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.568 07:33:52 14 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:33:52 14 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:33:52 14 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:33:52 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 07:33:52 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:38:48 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 07:38:50 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:38:50 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:39:57 14 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:39:57 14 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:39:57 14 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:39:57 14 Apr 2017 UTC /home/sg626/p6260568.log /home/sg626/p6260568.eng /home/sg626/p6260568.asc /home/sg626/p6260568.pro /home/sg626/p6260568.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:39:57 14 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:39:57 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:39:57 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:39:57 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:39:57 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:39:57 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:39:57 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:39:57 14 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:39:57 14 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:39:57 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:39:57 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:39:57 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:39:57 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:39:57 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:39:57 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:39:57 14 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:39:57 14 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:39:57 14 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:39:57 14 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:39:57 14 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:39:57 14 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:39:57 14 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:39:57 14 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:39:57 14 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 07:39:57 14 Apr 2017 UTC 11:17:24 14 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 27191 11:17:24 14 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 11:20:42 14 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 27471 11:20:42 14 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:20:42 14 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 11:20:42 14 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 11:20:42 14 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:20:42 14 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170414012042 ] 11:20:42 14 Apr 2017 UTC: INFO: Base.py(1333): PID:27478 11:20:43 14 Apr 2017 UTC: INFO: Base.py(1375): Started processing 11:20:43 14 Apr 2017 UTC 11:20:43 14 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 11:20:44 14 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 11:20:44 14 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:20:44 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:20:44 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:569 calls_made:1 call_cycle:0 11:20:44 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:20:44 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:569 calls_made:1 call_cycle:0 11:20:44 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:20:44 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:569 calls_made:1 call_cycle:0 11:20:44 14 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:569 calls_made:1 call_cycle:0 2233.7890 -15801.7850 04/14/17 11:15:00 UTC) to sdrifter@soest.hawaii.edu 11:20:44 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:569 calls_made:1 call_cycle:0 11:20:44 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:20:44 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:569 calls_made:1 call_cycle:0 11:20:44 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:20:44 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:569 calls_made:1 call_cycle:0 11:20:44 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:20:44 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:569 calls_made:1 call_cycle:0 11:20:44 14 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:20:44 14 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:20:53 14 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:20:55 14 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:20:55 14 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 11:20:55 14 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:20:55 14 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:20:55 14 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 11:21:00 14 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0569lz 11:21:00 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0569lz.x00 11:21:00 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0569lz.x01 11:21:00 14 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0569lz.r in process_file_group 11:21:00 14 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260569.log 11:21:00 14 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 11:21:00 14 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0569dz 11:21:00 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0569dz.x00 11:21:00 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0569dz.x01 11:21:00 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0569dz.x02 11:21:00 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0569dz.x03 11:21:00 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0569dz.x04 11:21:00 14 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0569dz.r in process_file_group 11:21:00 14 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [569] 11:21:00 14 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [569] 11:21:01 14 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260569) for profiles 11:21:01 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 11:21:01 14 Apr 2017 UTC: INFO: QC.py(365): Changed (4/684) 2 285 514 515 to QC_PROBABLY_BAD because raw temperature spikes 11:21:01 14 Apr 2017 UTC: INFO: QC.py(408): Changed (7/684) 210 211 285 514 515 536 673 to QC_PROBABLY_BAD because raw conductivity spikes 11:21:01 14 Apr 2017 UTC: INFO: QC.py(180): Changed (4/684) 2 285 514 515 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 11:21:01 14 Apr 2017 UTC: INFO: QC.py(180): Changed (4/684) 210 211 536 673 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 11:21:01 14 Apr 2017 UTC: INFO: QC.py(365): Changed (4/684) 2 285 514 515 to QC_INTERPOLATED because temperature spikes 11:21:01 14 Apr 2017 UTC: INFO: QC.py(408): Changed (7/684) 210 211 285 514 515 536 673 to QC_INTERPOLATED because conductivity spikes 11:21:01 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/684) 261:265 to QC_BAD because slow apogee CT flow 11:21:01 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/684) 1:6 to QC_BAD because prior to dive start 11:21:01 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/684) 1:6 261:265 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 11:21:01 14 Apr 2017 UTC: INFO: QC.py(180): Changed (11/684) 1:6 261:265 to QC_BAD because changed corrected salin implies changed speed 11:21:02 14 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 11:21:02 14 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 569 interp_salinity data_points in_between 366 381 % suspect thermal-inertia points 372 11:21:02 14 Apr 2017 UTC: INFO: QC.py(180): Changed (3/684) 285 514 515 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 11:21:02 14 Apr 2017 UTC: INFO: QC.py(180): Changed (4/684) 210 211 536 673 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 11:21:02 14 Apr 2017 UTC: INFO: QC.py(180): Changed (3/684) 285 514 515 to QC_INTERPOLATED because changed corrected temp implies changed speed 11:21:02 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.03 cm/s 11:21:02 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.27 cm/s 11:21:02 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 11:21:02 14 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (191/684) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 11:21:02 14 Apr 2017 UTC: INFO: QC.py(180): Changed (3/684) 2 514 515 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 11:21:02 14 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (191/684) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 11:21:02 14 Apr 2017 UTC: INFO: QC.py(180): Changed (3/684) 2 514 515 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 11:21:02 14 Apr 2017 UTC: INFO: QC.py(180): Changed (11/684) 1:6 261:265 to QC_BAD because changed salinity implies changed optode oxygen 11:21:02 14 Apr 2017 UTC: INFO: QC.py(180): Changed (3/684) 211 536 673 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 11:21:02 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 11:21:02 14 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 11:21:02 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 11:21:02 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 569: Data set size for profile, binned and kkyy files reduced by 11 points, a 1.61% reduction 11:21:02 14 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.569 11:21:02 14 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:21:02 14 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:21:02 14 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:21:02 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 11:21:02 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 11:25:55 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 11:25:57 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 11:25:57 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 11:27:03 14 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:27:03 14 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:27:03 14 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:27:03 14 Apr 2017 UTC /home/sg626/p6260569.log /home/sg626/p6260569.eng /home/sg626/p6260569.asc /home/sg626/p6260569.pro /home/sg626/p6260569.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 11:27:03 14 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:27:03 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:27:03 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:27:03 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:27:03 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:27:03 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:27:03 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:27:03 14 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:27:03 14 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:27:03 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:27:03 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:27:03 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:27:03 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:27:03 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:27:03 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:27:03 14 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:27:03 14 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 11:27:03 14 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 11:27:03 14 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 11:27:03 14 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 11:27:03 14 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:27:03 14 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:27:03 14 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:27:03 14 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 11:27:03 14 Apr 2017 UTC 14:55:52 14 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 1781 14:55:52 14 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:59:03 14 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 1924 14:59:03 14 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:59:03 14 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 14:59:03 14 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 14:59:03 14 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:59:03 14 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170414045903 ] 14:59:03 14 Apr 2017 UTC: INFO: Base.py(1333): PID:1932 14:59:03 14 Apr 2017 UTC: INFO: Base.py(1375): Started processing 14:59:03 14 Apr 2017 UTC 14:59:03 14 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 14:59:05 14 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 14:59:05 14 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:59:05 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:59:05 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:570 calls_made:1 call_cycle:0 14:59:05 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:59:05 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:570 calls_made:1 call_cycle:0 14:59:05 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:59:05 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:570 calls_made:1 call_cycle:0 14:59:05 14 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:570 calls_made:1 call_cycle:0 2232.9360 -15801.0790 04/14/17 14:53:31 UTC) to sdrifter@soest.hawaii.edu 14:59:05 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:570 calls_made:1 call_cycle:0 14:59:05 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:59:05 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:570 calls_made:1 call_cycle:0 14:59:05 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:59:05 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:570 calls_made:1 call_cycle:0 14:59:05 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:59:05 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:570 calls_made:1 call_cycle:0 14:59:05 14 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:59:05 14 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:59:14 14 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:59:16 14 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:59:16 14 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 14:59:16 14 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:59:16 14 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:59:16 14 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 14:59:21 14 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0570lz 14:59:21 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0570lz.x00 14:59:21 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0570lz.x01 14:59:21 14 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0570lz.r in process_file_group 14:59:21 14 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260570.log 14:59:21 14 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 14:59:21 14 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0570dz 14:59:21 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0570dz.x00 14:59:21 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0570dz.x01 14:59:21 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0570dz.x02 14:59:21 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0570dz.x03 14:59:21 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0570dz.x04 14:59:21 14 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0570dz.r in process_file_group 14:59:21 14 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [570] 14:59:21 14 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [570] 14:59:22 14 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260570) for profiles 14:59:22 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 14:59:22 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/651) 650 651 to QC_BAD because CT out of water 14:59:22 14 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.062m) 14:59:22 14 Apr 2017 UTC: INFO: QC.py(365): Changed (7/651) 2 3 99 297 456 458 459 to QC_PROBABLY_BAD because raw temperature spikes 14:59:22 14 Apr 2017 UTC: INFO: QC.py(408): Changed (7/651) 2 65 99 128 456 458 459 to QC_PROBABLY_BAD because raw conductivity spikes 14:59:22 14 Apr 2017 UTC: INFO: QC.py(180): Changed (7/651) 2 3 99 297 456 458 459 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:59:22 14 Apr 2017 UTC: INFO: QC.py(180): Changed (2/651) 65 128 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 14:59:22 14 Apr 2017 UTC: INFO: QC.py(180): Changed (2/651) 650 651 to QC_BAD because changed raw cond implies changed raw salinity 14:59:22 14 Apr 2017 UTC: INFO: QC.py(365): Changed (7/651) 2 3 99 297 456 458 459 to QC_INTERPOLATED because temperature spikes 14:59:22 14 Apr 2017 UTC: INFO: QC.py(408): Changed (7/651) 2 65 99 128 456 458 459 to QC_INTERPOLATED because conductivity spikes 14:59:22 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/651) 267:271 to QC_BAD because slow apogee CT flow 14:59:22 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/651) 1:6 to QC_BAD because prior to dive start 14:59:22 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/651) 649 to QC_BAD because end of climb 14:59:22 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/651) 1:6 267:271 649:651 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:59:22 14 Apr 2017 UTC: INFO: QC.py(180): Changed (14/651) 1:6 267:271 649:651 to QC_BAD because changed corrected salin implies changed speed 14:59:22 14 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:59:22 14 Apr 2017 UTC: INFO: QC.py(180): Changed (5/651) 99 297 456 458 459 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 14:59:22 14 Apr 2017 UTC: INFO: QC.py(180): Changed (2/651) 65 128 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 14:59:22 14 Apr 2017 UTC: INFO: QC.py(180): Changed (5/651) 99 297 456 458 459 to QC_INTERPOLATED because changed corrected temp implies changed speed 14:59:22 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.49 cm/s 14:59:22 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.47 cm/s 14:59:22 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:59:22 14 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (186/651) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:59:22 14 Apr 2017 UTC: INFO: QC.py(180): Changed (6/651) 2 3 99 456 458 459 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 14:59:22 14 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (186/651) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 14:59:22 14 Apr 2017 UTC: INFO: QC.py(180): Changed (6/651) 2 3 99 456 458 459 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 14:59:22 14 Apr 2017 UTC: INFO: QC.py(180): Changed (14/651) 1:6 267:271 649:651 to QC_BAD because changed salinity implies changed optode oxygen 14:59:22 14 Apr 2017 UTC: INFO: QC.py(180): Changed (2/651) 65 128 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 14:59:22 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:59:22 14 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:59:22 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 14:59:23 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 570: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.15% reduction 14:59:23 14 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.570 14:59:23 14 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:59:23 14 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:59:23 14 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:59:23 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 14:59:23 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 15:04:20 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 15:04:22 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 15:04:22 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 15:05:29 14 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 15:05:29 14 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 15:05:29 14 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 15:05:29 14 Apr 2017 UTC /home/sg626/p6260570.log /home/sg626/p6260570.eng /home/sg626/p6260570.asc /home/sg626/p6260570.pro /home/sg626/p6260570.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 15:05:29 14 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 15:05:29 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:05:29 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:05:29 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:05:29 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:05:29 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:05:29 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:05:29 14 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:05:29 14 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 15:05:29 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:05:29 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:05:29 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:05:29 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:05:29 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:05:29 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:05:29 14 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:05:29 14 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 15:05:29 14 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 15:05:29 14 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 15:05:29 14 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 15:05:29 14 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 15:05:29 14 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 15:05:29 14 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 15:05:29 14 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 15:05:29 14 Apr 2017 UTC 18:47:14 14 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 9441 18:47:14 14 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 18:50:17 14 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 9696 18:50:17 14 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:50:17 14 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 18:50:17 14 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 18:50:17 14 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:50:17 14 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170414085016 ] 18:50:17 14 Apr 2017 UTC: INFO: Base.py(1333): PID:9704 18:50:17 14 Apr 2017 UTC: INFO: Base.py(1375): Started processing 18:50:17 14 Apr 2017 UTC 18:50:17 14 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 18:50:18 14 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 18:50:18 14 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:50:18 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:50:18 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:571 calls_made:1 call_cycle:0 18:50:18 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:50:18 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:571 calls_made:1 call_cycle:0 18:50:18 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:50:18 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:571 calls_made:1 call_cycle:0 18:50:18 14 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:571 calls_made:1 call_cycle:0 2233.1580 -15800.3030 04/14/17 18:44:51 UTC) to sdrifter@soest.hawaii.edu 18:50:19 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:571 calls_made:1 call_cycle:0 18:50:19 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:50:19 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:571 calls_made:1 call_cycle:0 18:50:19 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:50:19 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:571 calls_made:1 call_cycle:0 18:50:19 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:50:19 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:571 calls_made:1 call_cycle:0 18:50:19 14 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:50:19 14 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:50:28 14 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:50:29 14 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:50:29 14 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 18:50:29 14 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:50:29 14 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:50:29 14 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 18:50:34 14 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0571lz 18:50:34 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0571lz.x00 18:50:34 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0571lz.x01 18:50:34 14 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0571lz.r in process_file_group 18:50:34 14 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260571.log 18:50:34 14 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 18:50:34 14 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0571dz 18:50:34 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0571dz.x00 18:50:34 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0571dz.x01 18:50:34 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0571dz.x02 18:50:34 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0571dz.x03 18:50:34 14 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0571dz.r in process_file_group 18:50:35 14 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [571] 18:50:35 14 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [571] 18:50:35 14 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260571) for profiles 18:50:35 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 18:50:35 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/652) 651 652 to QC_BAD because CT out of water 18:50:35 14 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.132m) 18:50:35 14 Apr 2017 UTC: INFO: QC.py(365): Changed (3/652) 2 238 323 to QC_PROBABLY_BAD because raw temperature spikes 18:50:35 14 Apr 2017 UTC: INFO: QC.py(377): Changed (1/652) 652 to QC_BAD because raw salinity below bound 18:50:35 14 Apr 2017 UTC: INFO: QC.py(408): Changed (3/652) 238 289 323 to QC_PROBABLY_BAD because raw conductivity spikes 18:50:35 14 Apr 2017 UTC: INFO: QC.py(180): Changed (3/652) 2 238 323 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 18:50:35 14 Apr 2017 UTC: INFO: QC.py(180): Changed (1/652) 289 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 18:50:35 14 Apr 2017 UTC: INFO: QC.py(180): Changed (1/652) 651 to QC_BAD because changed raw cond implies changed raw salinity 18:50:35 14 Apr 2017 UTC: INFO: QC.py(365): Changed (3/652) 2 238 323 to QC_INTERPOLATED because temperature spikes 18:50:35 14 Apr 2017 UTC: INFO: QC.py(377): Changed (1/652) 652 to QC_BAD because salinity below bound 18:50:35 14 Apr 2017 UTC: INFO: QC.py(408): Changed (3/652) 238 289 323 to QC_INTERPOLATED because conductivity spikes 18:50:35 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/652) 264:269 to QC_BAD because slow apogee CT flow 18:50:35 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/652) 1:6 to QC_BAD because prior to dive start 18:50:35 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/652) 1:6 264:269 651 652 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 18:50:35 14 Apr 2017 UTC: INFO: QC.py(180): Changed (14/652) 1:6 264:269 651 652 to QC_BAD because changed corrected salin implies changed speed 18:50:36 14 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 18:50:36 14 Apr 2017 UTC: INFO: QC.py(180): Changed (2/652) 238 323 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 18:50:36 14 Apr 2017 UTC: INFO: QC.py(180): Changed (1/652) 289 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 18:50:36 14 Apr 2017 UTC: INFO: QC.py(180): Changed (2/652) 238 323 to QC_INTERPOLATED because changed corrected temp implies changed speed 18:50:36 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.27 cm/s 18:50:36 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.85 cm/s 18:50:36 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 18:50:36 14 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (204/652) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 18:50:36 14 Apr 2017 UTC: INFO: QC.py(180): Changed (1/652) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 18:50:36 14 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (204/652) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 18:50:36 14 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/652) 652 to QC_BAD because bad aa4330 oyxgen 18:50:36 14 Apr 2017 UTC: INFO: QC.py(180): Changed (1/652) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 18:50:36 14 Apr 2017 UTC: INFO: QC.py(180): Changed (13/652) 1:6 264:269 651 to QC_BAD because changed salinity implies changed optode oxygen 18:50:36 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 18:50:36 14 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 18:50:36 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 18:50:36 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 571: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.15% reduction 18:50:36 14 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.571 18:50:36 14 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:50:36 14 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:50:36 14 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:50:37 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 18:50:37 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 18:55:31 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 18:55:33 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 18:55:33 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 18:56:40 14 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:56:40 14 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:56:40 14 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:56:40 14 Apr 2017 UTC /home/sg626/p6260571.log /home/sg626/p6260571.eng /home/sg626/p6260571.asc /home/sg626/p6260571.pro /home/sg626/p6260571.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 18:56:40 14 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:56:40 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:56:40 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:56:40 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:56:40 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:56:40 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:56:40 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:56:40 14 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:56:40 14 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:56:40 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:56:40 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:56:40 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:56:40 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:56:40 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:56:40 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:56:40 14 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:56:40 14 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 18:56:40 14 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 18:56:40 14 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 18:56:40 14 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 18:56:40 14 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:56:40 14 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:56:40 14 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:56:40 14 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 18:56:40 14 Apr 2017 UTC 22:39:25 14 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 16629 22:39:25 14 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:42:41 14 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 16844 22:42:41 14 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:42:41 14 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:42:41 14 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:42:41 14 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:42:41 14 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170414124241 ] 22:42:41 14 Apr 2017 UTC: INFO: Base.py(1333): PID:16852 22:42:41 14 Apr 2017 UTC: INFO: Base.py(1375): Started processing 22:42:41 14 Apr 2017 UTC 22:42:41 14 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:42:43 14 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:42:43 14 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:42:43 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:42:43 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:572 calls_made:1 call_cycle:0 22:42:43 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:42:43 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:572 calls_made:1 call_cycle:0 22:42:43 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:42:43 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:572 calls_made:1 call_cycle:0 22:42:43 14 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:572 calls_made:1 call_cycle:0 2233.3730 -15800.6310 04/14/17 22:37:01 UTC) to sdrifter@soest.hawaii.edu 22:42:43 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:572 calls_made:1 call_cycle:0 22:42:43 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:42:43 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:572 calls_made:1 call_cycle:0 22:42:43 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:42:43 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:572 calls_made:1 call_cycle:0 22:42:43 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:42:43 14 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:572 calls_made:1 call_cycle:0 22:42:43 14 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:42:43 14 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:42:52 14 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:42:54 14 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:42:54 14 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:42:54 14 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:42:54 14 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:42:54 14 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:42:59 14 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0572lz 22:42:59 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0572lz.x00 22:42:59 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0572lz.x01 22:42:59 14 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0572lz.r in process_file_group 22:42:59 14 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260572.log 22:42:59 14 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 22:42:59 14 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0572dz 22:42:59 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0572dz.x00 22:42:59 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0572dz.x01 22:42:59 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0572dz.x02 22:42:59 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0572dz.x03 22:42:59 14 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0572dz.x04 22:42:59 14 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0572dz.r in process_file_group 22:42:59 14 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [572] 22:42:59 14 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [572] 22:43:00 14 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260572) for profiles 22:43:00 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 22:43:00 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/695) 693:695 to QC_BAD because CT out of water 22:43:00 14 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.103m) 22:43:00 14 Apr 2017 UTC: INFO: QC.py(365): Changed (6/695) 4 248 249 305 693 694 to QC_PROBABLY_BAD because raw temperature spikes 22:43:00 14 Apr 2017 UTC: INFO: QC.py(377): Changed (2/695) 694 695 to QC_BAD because raw salinity below bound 22:43:00 14 Apr 2017 UTC: INFO: QC.py(408): Changed (4/695) 214 248 249 305 to QC_PROBABLY_BAD because raw conductivity spikes 22:43:00 14 Apr 2017 UTC: INFO: QC.py(180): Changed (5/695) 4 248 249 305 693 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 22:43:00 14 Apr 2017 UTC: INFO: QC.py(180): Changed (1/695) 214 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 22:43:00 14 Apr 2017 UTC: INFO: QC.py(180): Changed (1/695) 693 to QC_BAD because changed raw cond implies changed raw salinity 22:43:00 14 Apr 2017 UTC: INFO: QC.py(365): Changed (6/695) 4 248 249 305 693 694 to QC_INTERPOLATED because temperature spikes 22:43:00 14 Apr 2017 UTC: INFO: QC.py(377): Changed (2/695) 694 695 to QC_BAD because salinity below bound 22:43:00 14 Apr 2017 UTC: INFO: QC.py(408): Changed (4/695) 214 248 249 305 to QC_INTERPOLATED because conductivity spikes 22:43:00 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/695) 259:263 to QC_BAD because slow apogee CT flow 22:43:00 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/695) 1:6 to QC_BAD because prior to dive start 22:43:00 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/695) 1:6 259:263 693:695 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:43:00 14 Apr 2017 UTC: INFO: QC.py(180): Changed (14/695) 1:6 259:263 693:695 to QC_BAD because changed corrected salin implies changed speed 22:43:01 14 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:43:01 14 Apr 2017 UTC: INFO: QC.py(180): Changed (3/695) 248 249 305 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 22:43:01 14 Apr 2017 UTC: INFO: QC.py(180): Changed (1/695) 214 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 22:43:01 14 Apr 2017 UTC: INFO: QC.py(180): Changed (3/695) 248 249 305 to QC_INTERPOLATED because changed corrected temp implies changed speed 22:43:01 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.36 cm/s 22:43:01 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.11 cm/s 22:43:01 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:43:01 14 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (198/695) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:43:01 14 Apr 2017 UTC: INFO: QC.py(180): Changed (3/695) 4 693 694 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 22:43:01 14 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (198/695) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 22:43:01 14 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (3/695) 692:694 to QC_BAD because bad aa4330 oyxgen 22:43:01 14 Apr 2017 UTC: INFO: QC.py(180): Changed (1/695) 4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 22:43:01 14 Apr 2017 UTC: INFO: QC.py(180): Changed (12/695) 1:6 259:263 695 to QC_BAD because changed salinity implies changed optode oxygen 22:43:01 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:43:01 14 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 22:43:01 14 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 22:43:01 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 572: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.01% reduction 22:43:01 14 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.572 22:43:01 14 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:43:01 14 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:43:01 14 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:43:01 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 22:43:01 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 22:47:55 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 22:47:57 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 22:47:57 14 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 22:49:04 14 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:49:04 14 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:49:04 14 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:49:04 14 Apr 2017 UTC /home/sg626/p6260572.log /home/sg626/p6260572.eng /home/sg626/p6260572.asc /home/sg626/p6260572.pro /home/sg626/p6260572.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 22:49:04 14 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:49:04 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:49:04 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:49:04 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:49:04 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:49:04 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:49:04 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:49:04 14 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:49:04 14 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:49:04 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:49:04 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:49:04 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:49:04 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:49:04 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:49:04 14 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:49:04 14 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:49:04 14 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:49:04 14 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:49:04 14 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:49:04 14 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:49:04 14 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:49:04 14 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:49:04 14 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:49:04 14 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 22:49:04 14 Apr 2017 UTC 02:27:34 15 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 23577 02:27:34 15 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:30:47 15 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 23856 02:30:47 15 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:30:47 15 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:30:47 15 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:30:47 15 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:30:47 15 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170414163047 ] 02:30:47 15 Apr 2017 UTC: INFO: Base.py(1333): PID:23864 02:30:48 15 Apr 2017 UTC: INFO: Base.py(1375): Started processing 02:30:48 15 Apr 2017 UTC 02:30:48 15 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:30:49 15 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:30:49 15 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:30:49 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:30:49 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:573 calls_made:1 call_cycle:0 02:30:49 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:30:49 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:573 calls_made:1 call_cycle:0 02:30:49 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:30:49 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:573 calls_made:1 call_cycle:0 02:30:49 15 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:573 calls_made:1 call_cycle:0 2233.4200 -15800.3160 04/15/17 02:25:11 UTC) to sdrifter@soest.hawaii.edu 02:30:49 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:573 calls_made:1 call_cycle:0 02:30:49 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:30:49 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:573 calls_made:1 call_cycle:0 02:30:49 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:30:49 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:573 calls_made:1 call_cycle:0 02:30:49 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:30:49 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:573 calls_made:1 call_cycle:0 02:30:49 15 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:30:49 15 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:30:59 15 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:31:00 15 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:31:00 15 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:31:00 15 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:31:00 15 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:31:00 15 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:31:05 15 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0573lz 02:31:05 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0573lz.x00 02:31:05 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0573lz.x01 02:31:05 15 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0573lz.r in process_file_group 02:31:05 15 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260573.log 02:31:05 15 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 02:31:05 15 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0573dz 02:31:05 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0573dz.x00 02:31:05 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0573dz.x01 02:31:05 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0573dz.x02 02:31:05 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0573dz.x03 02:31:05 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0573dz.x04 02:31:05 15 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0573dz.r in process_file_group 02:31:06 15 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [573] 02:31:06 15 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [573] 02:31:06 15 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260573) for profiles 02:31:06 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 02:31:06 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/679) 678 679 to QC_BAD because CT out of water 02:31:06 15 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.118m) 02:31:06 15 Apr 2017 UTC: INFO: QC.py(365): Changed (6/679) 3 4 218 221 284 286 to QC_PROBABLY_BAD because raw temperature spikes 02:31:06 15 Apr 2017 UTC: INFO: QC.py(408): Changed (7/679) 2 5 218 220 221 223 284 to QC_PROBABLY_BAD because raw conductivity spikes 02:31:06 15 Apr 2017 UTC: INFO: QC.py(180): Changed (6/679) 3 4 218 221 284 286 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:31:06 15 Apr 2017 UTC: INFO: QC.py(180): Changed (4/679) 2 5 220 223 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 02:31:06 15 Apr 2017 UTC: INFO: QC.py(180): Changed (2/679) 678 679 to QC_BAD because changed raw cond implies changed raw salinity 02:31:06 15 Apr 2017 UTC: INFO: QC.py(365): Changed (6/679) 3 4 218 221 284 286 to QC_INTERPOLATED because temperature spikes 02:31:06 15 Apr 2017 UTC: INFO: QC.py(408): Changed (7/679) 2 5 218 220 221 223 284 to QC_INTERPOLATED because conductivity spikes 02:31:06 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/679) 254:258 to QC_BAD because slow apogee CT flow 02:31:06 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/679) 1:6 to QC_BAD because prior to dive start 02:31:06 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/679) 1:6 254:258 678 679 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:31:06 15 Apr 2017 UTC: INFO: QC.py(180): Changed (13/679) 1:6 254:258 678 679 to QC_BAD because changed corrected salin implies changed speed 02:31:07 15 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:31:07 15 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 573 interp_salinity data_points in_between 370 389 % suspect thermal-inertia points 383 02:31:07 15 Apr 2017 UTC: INFO: QC.py(180): Changed (4/679) 218 221 284 286 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 02:31:07 15 Apr 2017 UTC: INFO: QC.py(180): Changed (2/679) 220 223 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 02:31:07 15 Apr 2017 UTC: INFO: QC.py(180): Changed (4/679) 218 221 284 286 to QC_INTERPOLATED because changed corrected temp implies changed speed 02:31:07 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.94 cm/s 02:31:07 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.98 cm/s 02:31:07 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:31:07 15 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (196/679) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:31:07 15 Apr 2017 UTC: INFO: QC.py(180): Changed (4/679) 3 4 221 286 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:31:07 15 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (196/679) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 02:31:07 15 Apr 2017 UTC: INFO: QC.py(180): Changed (4/679) 3 4 221 286 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:31:07 15 Apr 2017 UTC: INFO: QC.py(180): Changed (13/679) 1:6 254:258 678 679 to QC_BAD because changed salinity implies changed optode oxygen 02:31:07 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:31:07 15 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:31:07 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 02:31:07 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 573: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.91% reduction 02:31:07 15 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.573 02:31:07 15 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:31:07 15 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:31:07 15 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:31:08 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 02:31:08 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 02:36:03 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 02:36:05 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 02:36:05 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 02:37:12 15 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:37:12 15 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:37:12 15 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:37:12 15 Apr 2017 UTC /home/sg626/p6260573.log /home/sg626/p6260573.eng /home/sg626/p6260573.asc /home/sg626/p6260573.pro /home/sg626/p6260573.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 02:37:12 15 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:37:12 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:37:12 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:37:12 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:37:12 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:37:12 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:37:12 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:37:12 15 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:37:12 15 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:37:12 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:37:12 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:37:12 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:37:12 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:37:12 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:37:12 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:37:12 15 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:37:12 15 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:37:12 15 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:37:12 15 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:37:12 15 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:37:12 15 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:37:12 15 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:37:12 15 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:37:12 15 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 02:37:12 15 Apr 2017 UTC 06:16:10 15 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 30866 06:16:10 15 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:16:35 15 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 30951 06:16:35 15 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:16:35 15 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 06:16:35 15 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 06:16:35 15 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:16:35 15 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170414201634 ] 06:16:35 15 Apr 2017 UTC: INFO: Base.py(1333): PID:30959 06:16:35 15 Apr 2017 UTC: INFO: Base.py(1375): Started processing 06:16:35 15 Apr 2017 UTC 06:16:35 15 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 06:16:36 15 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 06:16:36 15 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:16:36 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:16:36 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 06:16:36 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:16:36 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 06:16:36 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:16:36 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 06:16:36 15 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (No GPS fix available for this call) to sdrifter@soest.hawaii.edu 06:16:36 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 06:16:36 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:16:36 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 06:16:36 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:16:36 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 06:16:36 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:16:36 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 06:16:36 15 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:16:36 15 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:16:46 15 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:16:47 15 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:16:47 15 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 06:16:47 15 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:16:47 15 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:16:47 15 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 06:16:53 15 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 06:16:53 15 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 06:16:53 15 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 06:16:53 15 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.573 06:16:53 15 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:16:53 15 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:16:53 15 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:16:53 15 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:16:53 15 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:16:53 15 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:16:53 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:16:53 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:16:53 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:16:53 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:16:53 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:16:53 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:16:53 15 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:16:53 15 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:16:53 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:16:53 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:16:53 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:16:53 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:16:53 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:16:53 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:16:53 15 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:16:53 15 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 06:16:53 15 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 06:16:53 15 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 06:16:53 15 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 06:16:53 15 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:16:53 15 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:16:53 15 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:16:53 15 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 06:16:53 15 Apr 2017 UTC 06:22:25 15 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 31411 06:22:25 15 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:25:44 15 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 31535 06:25:44 15 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:25:44 15 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 06:25:44 15 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 06:25:44 15 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:25:44 15 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170414202543 ] 06:25:44 15 Apr 2017 UTC: INFO: Base.py(1333): PID:31543 06:25:44 15 Apr 2017 UTC: INFO: Base.py(1375): Started processing 06:25:44 15 Apr 2017 UTC 06:25:44 15 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 06:25:45 15 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 06:25:45 15 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:25:45 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:25:45 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:574 calls_made:4 call_cycle:0 06:25:45 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:25:45 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:574 calls_made:4 call_cycle:0 06:25:45 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:25:45 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:574 calls_made:4 call_cycle:0 06:25:45 15 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:574 calls_made:4 call_cycle:0 2233.7260 -15800.1460 04/15/17 06:13:18 UTC) to sdrifter@soest.hawaii.edu 06:25:45 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:574 calls_made:4 call_cycle:0 06:25:45 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:25:45 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:574 calls_made:4 call_cycle:0 06:25:45 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:25:45 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:574 calls_made:4 call_cycle:0 06:25:45 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:25:45 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:574 calls_made:4 call_cycle:0 06:25:45 15 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:25:45 15 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:25:54 15 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:25:56 15 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:25:56 15 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 06:25:56 15 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:25:56 15 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:25:56 15 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 06:26:01 15 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0574lz 06:26:01 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0574lz.x00 06:26:01 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0574lz.x01 06:26:01 15 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0574lz.r in process_file_group 06:26:01 15 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260574.log 06:26:01 15 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 06:26:01 15 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0574dz 06:26:01 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0574dz.x00 06:26:01 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0574dz.x01 06:26:01 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0574dz.x02 06:26:01 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0574dz.x03 06:26:01 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0574dz.x04 06:26:01 15 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0574dz.r in process_file_group 06:26:02 15 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [574] 06:26:02 15 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [574] 06:26:02 15 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260574) for profiles 06:26:02 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 06:26:02 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (4/696) 691 692 695 696 to QC_BAD because CT out of water 06:26:02 15 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.126m) 06:26:02 15 Apr 2017 UTC: INFO: QC.py(365): Changed (9/696) 220 230 233 234 268 276 277 692 693 to QC_PROBABLY_BAD because raw temperature spikes 06:26:02 15 Apr 2017 UTC: INFO: QC.py(408): Changed (7/696) 230 233 268 276 277 466 693 to QC_PROBABLY_BAD because raw conductivity spikes 06:26:02 15 Apr 2017 UTC: INFO: QC.py(180): Changed (9/696) 220 230 233 234 268 276 277 692 693 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 06:26:02 15 Apr 2017 UTC: INFO: QC.py(180): Changed (1/696) 466 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 06:26:02 15 Apr 2017 UTC: INFO: QC.py(180): Changed (4/696) 691 692 695 696 to QC_BAD because changed raw cond implies changed raw salinity 06:26:02 15 Apr 2017 UTC: INFO: QC.py(365): Changed (9/696) 220 230 233 234 268 276 277 692 693 to QC_INTERPOLATED because temperature spikes 06:26:02 15 Apr 2017 UTC: INFO: QC.py(408): Changed (7/696) 230 233 268 276 277 466 693 to QC_INTERPOLATED because conductivity spikes 06:26:02 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/696) 251:255 to QC_BAD because slow apogee CT flow 06:26:02 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/696) 1:6 to QC_BAD because prior to dive start 06:26:02 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/696) 693 694 to QC_BAD because end of climb 06:26:02 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (17/696) 1:6 251:255 691:696 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 06:26:02 15 Apr 2017 UTC: INFO: QC.py(180): Changed (17/696) 1:6 251:255 691:696 to QC_BAD because changed corrected salin implies changed speed 06:26:03 15 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 06:26:03 15 Apr 2017 UTC: INFO: QC.py(180): Changed (7/696) 220 230 233 234 268 276 277 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 06:26:03 15 Apr 2017 UTC: INFO: QC.py(180): Changed (1/696) 466 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 06:26:03 15 Apr 2017 UTC: INFO: QC.py(180): Changed (7/696) 220 230 233 234 268 276 277 to QC_INTERPOLATED because changed corrected temp implies changed speed 06:26:03 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.15 cm/s 06:26:03 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.33 cm/s 06:26:03 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 06:26:03 15 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (192/696) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 06:26:03 15 Apr 2017 UTC: INFO: QC.py(180): Changed (3/696) 276 692 693 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 06:26:03 15 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (192/696) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 06:26:03 15 Apr 2017 UTC: INFO: QC.py(180): Changed (3/696) 276 692 693 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 06:26:03 15 Apr 2017 UTC: INFO: QC.py(180): Changed (17/696) 1:6 251:255 691:696 to QC_BAD because changed salinity implies changed optode oxygen 06:26:03 15 Apr 2017 UTC: INFO: QC.py(180): Changed (1/696) 466 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 06:26:03 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 06:26:03 15 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 06:26:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 06:26:03 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 574: Data set size for profile, binned and kkyy files reduced by 17 points, a 2.44% reduction 06:26:03 15 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.574 06:26:03 15 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:26:03 15 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:26:03 15 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:26:04 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 06:26:04 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 06:31:00 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 06:31:02 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 06:31:02 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 06:32:09 15 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:32:09 15 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:32:09 15 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 06:32:09 15 Apr 2017 UTC /home/sg626/p6260574.log /home/sg626/p6260574.eng /home/sg626/p6260574.asc /home/sg626/p6260574.pro /home/sg626/p6260574.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 06:32:09 15 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:32:09 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:32:09 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:32:09 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:32:09 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:32:09 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:32:09 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:32:09 15 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:32:09 15 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:32:09 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:32:09 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:32:09 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:32:09 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:32:09 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:32:09 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:32:09 15 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:32:09 15 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 06:32:09 15 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 06:32:09 15 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 06:32:09 15 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 06:32:09 15 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:32:09 15 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:32:09 15 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:32:09 15 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 06:32:09 15 Apr 2017 UTC 10:16:27 15 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 6525 10:16:27 15 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:19:44 15 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 6638 10:19:44 15 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:19:44 15 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:19:44 15 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:19:44 15 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:19:44 15 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170415001943 ] 10:19:44 15 Apr 2017 UTC: INFO: Base.py(1333): PID:6646 10:19:44 15 Apr 2017 UTC: INFO: Base.py(1375): Started processing 10:19:44 15 Apr 2017 UTC 10:19:44 15 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:19:46 15 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:19:46 15 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:19:46 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:19:46 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:575 calls_made:1 call_cycle:0 10:19:46 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:19:46 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:575 calls_made:1 call_cycle:0 10:19:46 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:19:46 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:575 calls_made:1 call_cycle:0 10:19:46 15 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:575 calls_made:1 call_cycle:0 2233.9220 -15800.4010 04/15/17 10:14:00 UTC) to sdrifter@soest.hawaii.edu 10:19:46 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:575 calls_made:1 call_cycle:0 10:19:46 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:19:46 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:575 calls_made:1 call_cycle:0 10:19:46 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:19:46 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:575 calls_made:1 call_cycle:0 10:19:46 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:19:46 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:575 calls_made:1 call_cycle:0 10:19:46 15 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:19:46 15 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:19:55 15 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:19:56 15 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:19:56 15 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:19:56 15 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:19:57 15 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:19:57 15 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:20:02 15 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0575lz 10:20:02 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0575lz.x00 10:20:02 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0575lz.x01 10:20:02 15 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0575lz.r in process_file_group 10:20:02 15 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260575.log 10:20:02 15 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:20:02 15 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0575dz 10:20:02 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0575dz.x00 10:20:02 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0575dz.x01 10:20:02 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0575dz.x02 10:20:02 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0575dz.x03 10:20:02 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0575dz.x04 10:20:02 15 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0575dz.r in process_file_group 10:20:02 15 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [575] 10:20:02 15 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [575] 10:20:02 15 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260575) for profiles 10:20:02 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 10:20:02 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/677) 676 677 to QC_BAD because CT out of water 10:20:02 15 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.074m) 10:20:03 15 Apr 2017 UTC: INFO: QC.py(365): Changed (9/677) 2 223 230 231 252 255 274 276 676 to QC_PROBABLY_BAD because raw temperature spikes 10:20:03 15 Apr 2017 UTC: INFO: QC.py(408): Changed (6/677) 91 207 230 231 255 276 to QC_PROBABLY_BAD because raw conductivity spikes 10:20:03 15 Apr 2017 UTC: INFO: QC.py(180): Changed (9/677) 2 223 230 231 252 255 274 276 676 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 10:20:03 15 Apr 2017 UTC: INFO: QC.py(180): Changed (2/677) 91 207 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 10:20:03 15 Apr 2017 UTC: INFO: QC.py(180): Changed (2/677) 676 677 to QC_BAD because changed raw cond implies changed raw salinity 10:20:03 15 Apr 2017 UTC: INFO: QC.py(365): Changed (9/677) 2 223 230 231 252 255 274 276 676 to QC_INTERPOLATED because temperature spikes 10:20:03 15 Apr 2017 UTC: INFO: QC.py(408): Changed (6/677) 91 207 230 231 255 276 to QC_INTERPOLATED because conductivity spikes 10:20:03 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/677) 266:270 to QC_BAD because slow apogee CT flow 10:20:03 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/677) 1:6 to QC_BAD because prior to dive start 10:20:03 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/677) 675 to QC_BAD because end of climb 10:20:03 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/677) 1:6 266:270 675:677 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:20:03 15 Apr 2017 UTC: INFO: QC.py(180): Changed (14/677) 1:6 266:270 675:677 to QC_BAD because changed corrected salin implies changed speed 10:20:03 15 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 10:20:03 15 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 575 interp_salinity data_points in_between 431 439 % suspect thermal-inertia points 434 10:20:03 15 Apr 2017 UTC: INFO: QC.py(180): Changed (7/677) 223 230 231 252 255 274 276 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 10:20:03 15 Apr 2017 UTC: INFO: QC.py(180): Changed (2/677) 91 207 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 10:20:03 15 Apr 2017 UTC: INFO: QC.py(180): Changed (7/677) 223 230 231 252 255 274 276 to QC_INTERPOLATED because changed corrected temp implies changed speed 10:20:03 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.88 cm/s 10:20:03 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.27 cm/s 10:20:03 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:20:03 15 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (200/677) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:20:03 15 Apr 2017 UTC: INFO: QC.py(180): Changed (4/677) 2 231 276 676 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 10:20:03 15 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (200/677) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 10:20:03 15 Apr 2017 UTC: INFO: QC.py(180): Changed (4/677) 2 231 276 676 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 10:20:03 15 Apr 2017 UTC: INFO: QC.py(180): Changed (14/677) 1:6 266:270 675:677 to QC_BAD because changed salinity implies changed optode oxygen 10:20:03 15 Apr 2017 UTC: INFO: QC.py(180): Changed (1/677) 91 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 10:20:03 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:20:03 15 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:20:03 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 10:20:04 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 575: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.07% reduction 10:20:04 15 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.575 10:20:04 15 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:20:04 15 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:20:04 15 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:20:04 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 10:20:04 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 10:25:03 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 10:25:05 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 10:25:05 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 10:26:13 15 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:26:13 15 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:26:13 15 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 10:26:13 15 Apr 2017 UTC /home/sg626/p6260575.log /home/sg626/p6260575.eng /home/sg626/p6260575.asc /home/sg626/p6260575.pro /home/sg626/p6260575.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 10:26:13 15 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:26:13 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:26:13 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:26:13 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:26:13 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:26:13 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:26:13 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:26:13 15 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:26:13 15 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:26:13 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:26:13 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:26:13 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:26:13 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:26:13 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:26:13 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:26:13 15 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:26:13 15 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:26:13 15 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:26:13 15 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:26:13 15 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:26:13 15 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:26:13 15 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:26:13 15 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:26:13 15 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 10:26:13 15 Apr 2017 UTC 14:18:53 15 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 13951 14:18:53 15 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:22:08 15 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 14234 14:22:08 15 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:22:08 15 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 14:22:08 15 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 14:22:08 15 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:22:08 15 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170415042208 ] 14:22:08 15 Apr 2017 UTC: INFO: Base.py(1333): PID:14242 14:22:08 15 Apr 2017 UTC: INFO: Base.py(1375): Started processing 14:22:08 15 Apr 2017 UTC 14:22:08 15 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 14:22:10 15 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 14:22:10 15 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:22:10 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:22:10 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:576 calls_made:1 call_cycle:0 14:22:10 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:22:10 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:576 calls_made:1 call_cycle:0 14:22:10 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:22:10 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:576 calls_made:1 call_cycle:0 14:22:10 15 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:576 calls_made:1 call_cycle:0 2233.2560 -15759.7090 04/15/17 14:16:23 UTC) to sdrifter@soest.hawaii.edu 14:22:10 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:576 calls_made:1 call_cycle:0 14:22:10 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:22:10 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:576 calls_made:1 call_cycle:0 14:22:10 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:22:10 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:576 calls_made:1 call_cycle:0 14:22:10 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:22:10 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:576 calls_made:1 call_cycle:0 14:22:10 15 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:22:10 15 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:22:19 15 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:22:21 15 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:22:21 15 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 14:22:21 15 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:22:21 15 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:22:21 15 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 14:22:26 15 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0576lz 14:22:26 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0576lz.x00 14:22:26 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0576lz.x01 14:22:26 15 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0576lz.r in process_file_group 14:22:26 15 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260576.log 14:22:26 15 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 14:22:26 15 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0576dz 14:22:26 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0576dz.x00 14:22:26 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0576dz.x01 14:22:26 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0576dz.x02 14:22:26 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0576dz.x03 14:22:26 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0576dz.x04 14:22:26 15 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0576dz.r in process_file_group 14:22:26 15 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [576] 14:22:26 15 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [576] 14:22:26 15 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260576) for profiles 14:22:26 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 14:22:27 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/705) 703:705 to QC_BAD because CT out of water 14:22:27 15 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.118m) 14:22:27 15 Apr 2017 UTC: INFO: QC.py(365): Changed (4/705) 2 4 271 704 to QC_PROBABLY_BAD because raw temperature spikes 14:22:27 15 Apr 2017 UTC: INFO: QC.py(377): Changed (1/705) 705 to QC_BAD because raw salinity below bound 14:22:27 15 Apr 2017 UTC: INFO: QC.py(180): Changed (4/705) 2 4 271 704 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:22:27 15 Apr 2017 UTC: INFO: QC.py(180): Changed (2/705) 703 704 to QC_BAD because changed raw cond implies changed raw salinity 14:22:27 15 Apr 2017 UTC: INFO: QC.py(365): Changed (4/705) 2 4 271 704 to QC_INTERPOLATED because temperature spikes 14:22:27 15 Apr 2017 UTC: INFO: QC.py(377): Changed (1/705) 705 to QC_BAD because salinity below bound 14:22:27 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/705) 269:273 to QC_BAD because slow apogee CT flow 14:22:27 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/705) 1:6 to QC_BAD because prior to dive start 14:22:27 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/705) 702 to QC_BAD because end of climb 14:22:27 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/705) 1:6 269:273 702:705 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:22:27 15 Apr 2017 UTC: INFO: QC.py(180): Changed (15/705) 1:6 269:273 702:705 to QC_BAD because changed corrected salin implies changed speed 14:22:27 15 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:22:27 15 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 576 interp_salinity data_points in_between 421 439 % suspect thermal-inertia points 432 433 14:22:27 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.12 cm/s 14:22:27 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.48 cm/s 14:22:27 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:22:27 15 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (212/705) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:22:27 15 Apr 2017 UTC: INFO: QC.py(180): Changed (4/705) 2 4 271 704 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 14:22:27 15 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (212/705) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 14:22:27 15 Apr 2017 UTC: INFO: QC.py(180): Changed (4/705) 2 4 271 704 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 14:22:27 15 Apr 2017 UTC: INFO: QC.py(180): Changed (15/705) 1:6 269:273 702:705 to QC_BAD because changed salinity implies changed optode oxygen 14:22:27 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:22:27 15 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:22:27 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 14:22:28 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 576: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.13% reduction 14:22:28 15 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.576 14:22:28 15 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:22:28 15 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:22:28 15 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:22:28 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 14:22:28 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 14:27:25 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 14:27:27 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 14:27:27 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 14:28:36 15 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:28:36 15 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:28:36 15 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:28:36 15 Apr 2017 UTC /home/sg626/p6260576.log /home/sg626/p6260576.eng /home/sg626/p6260576.asc /home/sg626/p6260576.pro /home/sg626/p6260576.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 14:28:36 15 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:28:36 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:28:36 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:28:36 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:28:36 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:28:36 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:28:36 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:28:36 15 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:28:36 15 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:28:36 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:28:36 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:28:36 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:28:36 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:28:36 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:28:36 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:28:36 15 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:28:36 15 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:28:36 15 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:28:36 15 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:28:36 15 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:28:36 15 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:28:36 15 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:28:36 15 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:28:36 15 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 14:28:36 15 Apr 2017 UTC 18:12:46 15 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 22300 18:12:46 15 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 18:16:24 15 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 22501 18:16:24 15 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:16:24 15 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 18:16:24 15 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 18:16:24 15 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:16:24 15 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170415081624 ] 18:16:25 15 Apr 2017 UTC: INFO: Base.py(1333): PID:22509 18:16:25 15 Apr 2017 UTC: INFO: Base.py(1375): Started processing 18:16:25 15 Apr 2017 UTC 18:16:25 15 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 18:16:26 15 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 18:16:26 15 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:16:26 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:16:26 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:577 calls_made:1 call_cycle:0 18:16:26 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:16:26 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:577 calls_made:1 call_cycle:0 18:16:26 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:16:26 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:577 calls_made:1 call_cycle:0 18:16:26 15 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:577 calls_made:1 call_cycle:0 2233.5130 -15800.9150 04/15/17 18:10:19 UTC) to sdrifter@soest.hawaii.edu 18:16:26 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:577 calls_made:1 call_cycle:0 18:16:26 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:16:26 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:577 calls_made:1 call_cycle:0 18:16:26 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:16:26 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:577 calls_made:1 call_cycle:0 18:16:26 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:16:26 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:577 calls_made:1 call_cycle:0 18:16:26 15 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:16:26 15 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:16:36 15 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:16:37 15 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:16:37 15 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 18:16:37 15 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:16:37 15 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:16:37 15 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 18:16:42 15 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0577lz 18:16:42 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0577lz.x00 18:16:42 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0577lz.x01 18:16:42 15 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0577lz.r in process_file_group 18:16:42 15 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260577.log 18:16:42 15 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 18:16:42 15 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0577dz 18:16:42 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0577dz.x00 18:16:42 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0577dz.x01 18:16:42 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0577dz.x02 18:16:42 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0577dz.x03 18:16:42 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0577dz.x04 18:16:42 15 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0577dz.r in process_file_group 18:16:43 15 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [577] 18:16:43 15 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [577] 18:16:43 15 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260577) for profiles 18:16:43 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 18:16:43 15 Apr 2017 UTC: INFO: QC.py(365): Changed (3/709) 130 131 444 to QC_PROBABLY_BAD because raw temperature spikes 18:16:43 15 Apr 2017 UTC: INFO: QC.py(408): Changed (4/709) 129:131 444 to QC_PROBABLY_BAD because raw conductivity spikes 18:16:43 15 Apr 2017 UTC: INFO: QC.py(180): Changed (3/709) 130 131 444 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 18:16:43 15 Apr 2017 UTC: INFO: QC.py(180): Changed (1/709) 129 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 18:16:43 15 Apr 2017 UTC: INFO: QC.py(365): Changed (3/709) 130 131 444 to QC_INTERPOLATED because temperature spikes 18:16:43 15 Apr 2017 UTC: INFO: QC.py(408): Changed (4/709) 129:131 444 to QC_INTERPOLATED because conductivity spikes 18:16:43 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/709) 254:258 to QC_BAD because slow apogee CT flow 18:16:43 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (5/709) 1:5 to QC_BAD because prior to dive start 18:16:43 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (10/709) 1:5 254:258 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 18:16:43 15 Apr 2017 UTC: INFO: QC.py(180): Changed (10/709) 1:5 254:258 to QC_BAD because changed corrected salin implies changed speed 18:16:44 15 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 18:16:44 15 Apr 2017 UTC: INFO: QC.py(180): Changed (3/709) 130 131 444 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 18:16:44 15 Apr 2017 UTC: INFO: QC.py(180): Changed (1/709) 129 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 18:16:44 15 Apr 2017 UTC: INFO: QC.py(180): Changed (3/709) 130 131 444 to QC_INTERPOLATED because changed corrected temp implies changed speed 18:16:44 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.57 cm/s 18:16:44 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.29 cm/s 18:16:44 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 18:16:44 15 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (199/709) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 18:16:44 15 Apr 2017 UTC: INFO: QC.py(180): Changed (3/709) 130 131 444 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 18:16:44 15 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (199/709) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 18:16:44 15 Apr 2017 UTC: INFO: QC.py(180): Changed (3/709) 130 131 444 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 18:16:44 15 Apr 2017 UTC: INFO: QC.py(180): Changed (10/709) 1:5 254:258 to QC_BAD because changed salinity implies changed optode oxygen 18:16:44 15 Apr 2017 UTC: INFO: QC.py(180): Changed (1/709) 129 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 18:16:44 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 18:16:44 15 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 18:16:44 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 18:16:44 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 577: Data set size for profile, binned and kkyy files reduced by 10 points, a 1.41% reduction 18:16:45 15 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.577 18:16:45 15 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:16:45 15 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:16:45 15 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:16:45 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 18:16:45 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 18:21:44 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 18:21:46 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 18:21:46 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 18:22:55 15 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:22:55 15 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:22:55 15 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:22:55 15 Apr 2017 UTC /home/sg626/p6260577.log /home/sg626/p6260577.eng /home/sg626/p6260577.asc /home/sg626/p6260577.pro /home/sg626/p6260577.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 18:22:55 15 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:22:55 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:22:55 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:22:55 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:22:55 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:22:55 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:22:55 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:22:55 15 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:22:55 15 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:22:55 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:22:55 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:22:55 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:22:55 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:22:55 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:22:55 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:22:55 15 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:22:55 15 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 18:22:55 15 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 18:22:55 15 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 18:22:55 15 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 18:22:55 15 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:22:55 15 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:22:55 15 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:22:55 15 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 18:22:55 15 Apr 2017 UTC 22:10:41 15 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 29758 22:10:41 15 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:14:01 15 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 29872 22:14:01 15 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:14:01 15 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:14:01 15 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:14:01 15 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:14:01 15 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170415121401 ] 22:14:01 15 Apr 2017 UTC: INFO: Base.py(1333): PID:29880 22:14:02 15 Apr 2017 UTC: INFO: Base.py(1375): Started processing 22:14:02 15 Apr 2017 UTC 22:14:02 15 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:14:03 15 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:14:03 15 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:14:03 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:14:03 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:578 calls_made:1 call_cycle:0 22:14:03 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:14:03 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:578 calls_made:1 call_cycle:0 22:14:03 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:14:03 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:578 calls_made:1 call_cycle:0 22:14:03 15 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:578 calls_made:1 call_cycle:0 2233.0900 -15800.2290 04/15/17 22:08:00 UTC) to sdrifter@soest.hawaii.edu 22:14:03 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:578 calls_made:1 call_cycle:0 22:14:03 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:14:03 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:578 calls_made:1 call_cycle:0 22:14:03 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:14:03 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:578 calls_made:1 call_cycle:0 22:14:03 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:14:03 15 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:578 calls_made:1 call_cycle:0 22:14:03 15 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:14:03 15 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:14:13 15 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:14:14 15 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:14:14 15 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:14:14 15 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:14:14 15 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:14:14 15 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:14:19 15 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0578lz 22:14:19 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0578lz.x00 22:14:19 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0578lz.x01 22:14:19 15 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0578lz.r in process_file_group 22:14:19 15 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260578.log 22:14:19 15 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 22:14:19 15 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0578dz 22:14:19 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0578dz.x00 22:14:19 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0578dz.x01 22:14:19 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0578dz.x02 22:14:19 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0578dz.x03 22:14:19 15 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0578dz.x04 22:14:19 15 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0578dz.r in process_file_group 22:14:20 15 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [578] 22:14:20 15 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [578] 22:14:20 15 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260578) for profiles 22:14:20 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 22:14:20 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/725) 724 725 to QC_BAD because CT out of water 22:14:20 15 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.169m) 22:14:20 15 Apr 2017 UTC: INFO: QC.py(365): Changed (1/725) 263 to QC_PROBABLY_BAD because raw temperature spikes 22:14:20 15 Apr 2017 UTC: INFO: QC.py(377): Changed (1/725) 725 to QC_BAD because raw salinity below bound 22:14:20 15 Apr 2017 UTC: INFO: QC.py(408): Changed (2/725) 113 263 to QC_PROBABLY_BAD because raw conductivity spikes 22:14:20 15 Apr 2017 UTC: INFO: QC.py(180): Changed (1/725) 263 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 22:14:20 15 Apr 2017 UTC: INFO: QC.py(180): Changed (1/725) 113 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 22:14:20 15 Apr 2017 UTC: INFO: QC.py(180): Changed (1/725) 724 to QC_BAD because changed raw cond implies changed raw salinity 22:14:20 15 Apr 2017 UTC: INFO: QC.py(365): Changed (1/725) 263 to QC_INTERPOLATED because temperature spikes 22:14:20 15 Apr 2017 UTC: INFO: QC.py(377): Changed (1/725) 725 to QC_BAD because salinity below bound 22:14:20 15 Apr 2017 UTC: INFO: QC.py(408): Changed (2/725) 113 263 to QC_INTERPOLATED because conductivity spikes 22:14:20 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/725) 270:274 to QC_BAD because slow apogee CT flow 22:14:20 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/725) 1:6 to QC_BAD because prior to dive start 22:14:20 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/725) 1:6 270:274 724 725 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:14:20 15 Apr 2017 UTC: INFO: QC.py(180): Changed (13/725) 1:6 270:274 724 725 to QC_BAD because changed corrected salin implies changed speed 22:14:21 15 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:14:21 15 Apr 2017 UTC: INFO: QC.py(180): Changed (1/725) 263 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 22:14:21 15 Apr 2017 UTC: INFO: QC.py(180): Changed (1/725) 113 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 22:14:21 15 Apr 2017 UTC: INFO: QC.py(180): Changed (1/725) 263 to QC_INTERPOLATED because changed corrected temp implies changed speed 22:14:21 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.64 cm/s 22:14:21 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.24 cm/s 22:14:21 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:14:21 15 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (200/725) 153:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:14:21 15 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (200/725) 153:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 22:14:21 15 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/725) 724 to QC_BAD because bad aa4330 oyxgen 22:14:21 15 Apr 2017 UTC: INFO: QC.py(180): Changed (12/725) 1:6 270:274 725 to QC_BAD because changed salinity implies changed optode oxygen 22:14:21 15 Apr 2017 UTC: INFO: QC.py(180): Changed (1/725) 113 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 22:14:21 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:14:21 15 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 22:14:21 15 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 22:14:21 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 578: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.79% reduction 22:14:21 15 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.578 22:14:21 15 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:14:21 15 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:14:21 15 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:14:22 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 22:14:22 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 22:19:22 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 22:19:24 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 22:19:24 15 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 22:20:32 15 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:20:32 15 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:20:32 15 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:20:32 15 Apr 2017 UTC /home/sg626/p6260578.log /home/sg626/p6260578.eng /home/sg626/p6260578.asc /home/sg626/p6260578.pro /home/sg626/p6260578.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 22:20:32 15 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:20:32 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:20:32 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:20:32 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:20:32 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:20:32 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:20:32 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:20:32 15 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:20:32 15 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:20:32 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:20:32 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:20:32 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:20:32 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:20:32 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:20:32 15 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:20:32 15 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:20:32 15 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:20:32 15 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:20:32 15 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:20:32 15 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:20:32 15 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:20:32 15 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:20:32 15 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:20:32 15 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 22:20:32 15 Apr 2017 UTC 02:11:36 16 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 6462 02:11:36 16 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:14:50 16 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 6688 02:14:50 16 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:14:50 16 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:14:50 16 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:14:50 16 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:14:50 16 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170415161450 ] 02:14:50 16 Apr 2017 UTC: INFO: Base.py(1333): PID:6696 02:14:50 16 Apr 2017 UTC: INFO: Base.py(1375): Started processing 02:14:50 16 Apr 2017 UTC 02:14:50 16 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:14:52 16 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:14:52 16 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:14:52 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:14:52 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:579 calls_made:1 call_cycle:0 02:14:52 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:14:52 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:579 calls_made:1 call_cycle:0 02:14:52 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:14:52 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:579 calls_made:1 call_cycle:0 02:14:52 16 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:579 calls_made:1 call_cycle:0 2233.4700 -15800.4100 04/16/17 02:09:01 UTC) to sdrifter@soest.hawaii.edu 02:14:52 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:579 calls_made:1 call_cycle:0 02:14:52 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:14:52 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:579 calls_made:1 call_cycle:0 02:14:52 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:14:52 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:579 calls_made:1 call_cycle:0 02:14:52 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:14:52 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:579 calls_made:1 call_cycle:0 02:14:52 16 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:14:52 16 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:15:01 16 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:15:03 16 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:15:03 16 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:15:03 16 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:15:03 16 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:15:03 16 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:15:08 16 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0579lz 02:15:08 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0579lz.x00 02:15:08 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0579lz.x01 02:15:08 16 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0579lz.r in process_file_group 02:15:08 16 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260579.log 02:15:08 16 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 02:15:08 16 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0579dz 02:15:08 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0579dz.x00 02:15:08 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0579dz.x01 02:15:08 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0579dz.x02 02:15:08 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0579dz.x03 02:15:08 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0579dz.x04 02:15:08 16 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0579dz.r in process_file_group 02:15:09 16 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [579] 02:15:09 16 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [579] 02:15:09 16 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260579) for profiles 02:15:09 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 02:15:09 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/705) 703:705 to QC_BAD because CT out of water 02:15:09 16 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.106m) 02:15:09 16 Apr 2017 UTC: INFO: QC.py(365): Changed (8/705) 2 236 238 284 285 299 703 704 to QC_PROBABLY_BAD because raw temperature spikes 02:15:09 16 Apr 2017 UTC: INFO: QC.py(377): Changed (1/705) 703 to QC_BAD because raw salinity below bound 02:15:09 16 Apr 2017 UTC: INFO: QC.py(408): Changed (2/705) 236 238 to QC_PROBABLY_BAD because raw conductivity spikes 02:15:09 16 Apr 2017 UTC: INFO: QC.py(180): Changed (7/705) 2 236 238 284 285 299 704 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:15:09 16 Apr 2017 UTC: INFO: QC.py(180): Changed (2/705) 704 705 to QC_BAD because changed raw cond implies changed raw salinity 02:15:09 16 Apr 2017 UTC: INFO: QC.py(365): Changed (8/705) 2 236 238 284 285 299 703 704 to QC_INTERPOLATED because temperature spikes 02:15:09 16 Apr 2017 UTC: INFO: QC.py(377): Changed (1/705) 703 to QC_BAD because salinity below bound 02:15:09 16 Apr 2017 UTC: INFO: QC.py(408): Changed (2/705) 236 238 to QC_INTERPOLATED because conductivity spikes 02:15:09 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/705) 282:286 to QC_BAD because slow apogee CT flow 02:15:09 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/705) 1:6 to QC_BAD because prior to dive start 02:15:09 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/705) 1:6 282:286 703:705 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:15:09 16 Apr 2017 UTC: INFO: QC.py(180): Changed (14/705) 1:6 282:286 703:705 to QC_BAD because changed corrected salin implies changed speed 02:15:10 16 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:15:10 16 Apr 2017 UTC: INFO: QC.py(180): Changed (3/705) 236 238 299 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 02:15:10 16 Apr 2017 UTC: INFO: QC.py(180): Changed (3/705) 236 238 299 to QC_INTERPOLATED because changed corrected temp implies changed speed 02:15:10 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.42 cm/s 02:15:10 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.54 cm/s 02:15:10 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:15:10 16 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (211/705) 153:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:15:10 16 Apr 2017 UTC: INFO: QC.py(180): Changed (4/705) 2 236 703 704 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:15:10 16 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (211/705) 153:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 02:15:10 16 Apr 2017 UTC: INFO: QC.py(180): Changed (4/705) 2 236 703 704 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:15:10 16 Apr 2017 UTC: INFO: QC.py(180): Changed (14/705) 1:6 282:286 703:705 to QC_BAD because changed salinity implies changed optode oxygen 02:15:10 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:15:10 16 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:15:10 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 02:15:10 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 579: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.99% reduction 02:15:10 16 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.579 02:15:10 16 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:15:10 16 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:15:10 16 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:15:11 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 02:15:11 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 02:20:11 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 02:20:13 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 02:20:13 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 02:21:21 16 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:21:21 16 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:21:21 16 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:21:21 16 Apr 2017 UTC /home/sg626/p6260579.log /home/sg626/p6260579.eng /home/sg626/p6260579.asc /home/sg626/p6260579.pro /home/sg626/p6260579.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 02:21:21 16 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:21:21 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:21:21 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:21:21 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:21:21 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:21:21 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:21:21 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:21:21 16 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:21:21 16 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:21:21 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:21:21 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:21:21 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:21:21 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:21:21 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:21:21 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:21:21 16 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:21:21 16 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:21:21 16 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:21:21 16 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:21:21 16 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:21:21 16 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:21:21 16 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:21:21 16 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:21:21 16 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 02:21:21 16 Apr 2017 UTC 06:07:33 16 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 15250 06:07:33 16 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:10:54 16 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 15645 06:10:54 16 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:10:54 16 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 06:10:54 16 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 06:10:54 16 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:10:54 16 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170415201053 ] 06:10:54 16 Apr 2017 UTC: INFO: Base.py(1333): PID:15653 06:10:54 16 Apr 2017 UTC: INFO: Base.py(1375): Started processing 06:10:54 16 Apr 2017 UTC 06:10:54 16 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 06:10:56 16 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 06:10:56 16 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:10:56 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:10:56 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:580 calls_made:2 call_cycle:0 06:10:56 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:10:56 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:580 calls_made:2 call_cycle:0 06:10:56 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:10:56 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:580 calls_made:2 call_cycle:0 06:10:56 16 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:580 calls_made:2 call_cycle:0 2233.2400 -15800.0760 04/16/17 06:02:46 UTC) to sdrifter@soest.hawaii.edu 06:10:56 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:580 calls_made:2 call_cycle:0 06:10:56 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:10:56 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:580 calls_made:2 call_cycle:0 06:10:56 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:10:56 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:580 calls_made:2 call_cycle:0 06:10:56 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:10:56 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:580 calls_made:2 call_cycle:0 06:10:56 16 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:10:56 16 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:11:05 16 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:11:07 16 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:11:07 16 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 06:11:07 16 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:11:07 16 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:11:07 16 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 06:11:12 16 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0580lz 06:11:12 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0580lz.x00 06:11:12 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0580lz.x01 06:11:12 16 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0580lz.r in process_file_group 06:11:12 16 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260580.log 06:11:12 16 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 06:11:12 16 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0580dz 06:11:12 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0580dz.x00 06:11:12 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0580dz.x01 06:11:12 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0580dz.x02 06:11:12 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0580dz.x03 06:11:12 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0580dz.x04 06:11:12 16 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0580dz.r in process_file_group 06:11:12 16 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [580] 06:11:12 16 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [580] 06:11:13 16 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260580) for profiles 06:11:13 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 06:11:13 16 Apr 2017 UTC: INFO: QC.py(365): Changed (2/689) 2 224 to QC_PROBABLY_BAD because raw temperature spikes 06:11:13 16 Apr 2017 UTC: INFO: QC.py(408): Changed (1/689) 224 to QC_PROBABLY_BAD because raw conductivity spikes 06:11:13 16 Apr 2017 UTC: INFO: QC.py(180): Changed (2/689) 2 224 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 06:11:13 16 Apr 2017 UTC: INFO: QC.py(365): Changed (2/689) 2 224 to QC_INTERPOLATED because temperature spikes 06:11:13 16 Apr 2017 UTC: INFO: QC.py(408): Changed (1/689) 224 to QC_INTERPOLATED because conductivity spikes 06:11:13 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/689) 266:270 to QC_BAD because slow apogee CT flow 06:11:13 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (5/689) 1:5 to QC_BAD because prior to dive start 06:11:13 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (10/689) 1:5 266:270 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 06:11:13 16 Apr 2017 UTC: INFO: QC.py(180): Changed (10/689) 1:5 266:270 to QC_BAD because changed corrected salin implies changed speed 06:11:14 16 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 06:11:14 16 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 580 interp_salinity data_points in_between 366 391 % suspect thermal-inertia points 389 06:11:14 16 Apr 2017 UTC: INFO: QC.py(180): Changed (1/689) 224 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 06:11:14 16 Apr 2017 UTC: INFO: QC.py(180): Changed (1/689) 224 to QC_INTERPOLATED because changed corrected temp implies changed speed 06:11:14 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.60 cm/s 06:11:14 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.30 cm/s 06:11:14 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 06:11:14 16 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (202/689) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 06:11:14 16 Apr 2017 UTC: INFO: QC.py(180): Changed (1/689) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 06:11:14 16 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (202/689) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 06:11:14 16 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/689) 542 to QC_BAD because bad aa4330 oyxgen 06:11:14 16 Apr 2017 UTC: INFO: QC.py(180): Changed (1/689) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 06:11:14 16 Apr 2017 UTC: INFO: QC.py(180): Changed (10/689) 1:5 266:270 to QC_BAD because changed salinity implies changed optode oxygen 06:11:14 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 06:11:14 16 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 06:11:14 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 06:11:14 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 580: Data set size for profile, binned and kkyy files reduced by 10 points, a 1.45% reduction 06:11:14 16 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.580 06:11:14 16 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:11:14 16 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:11:14 16 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:11:14 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 06:11:14 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 06:16:15 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 06:16:17 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 06:16:17 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 06:17:26 16 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:17:26 16 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:17:26 16 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 06:17:26 16 Apr 2017 UTC /home/sg626/p6260580.log /home/sg626/p6260580.eng /home/sg626/p6260580.asc /home/sg626/p6260580.pro /home/sg626/p6260580.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 06:17:26 16 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:17:26 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:17:26 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:17:26 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:17:26 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:17:26 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:17:26 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:17:26 16 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:17:26 16 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:17:26 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:17:26 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:17:26 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:17:26 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:17:26 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:17:26 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:17:26 16 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:17:26 16 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 06:17:26 16 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 06:17:26 16 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 06:17:26 16 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 06:17:26 16 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:17:26 16 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:17:26 16 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:17:26 16 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 06:17:26 16 Apr 2017 UTC 10:06:00 16 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 26125 10:06:00 16 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:09:24 16 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 26332 10:09:24 16 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:09:24 16 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:09:24 16 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:09:24 16 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:09:24 16 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170416000924 ] 10:09:24 16 Apr 2017 UTC: INFO: Base.py(1333): PID:26339 10:09:24 16 Apr 2017 UTC: INFO: Base.py(1375): Started processing 10:09:24 16 Apr 2017 UTC 10:09:24 16 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:09:26 16 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:09:26 16 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:09:26 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:09:26 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:581 calls_made:1 call_cycle:0 10:09:26 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:09:26 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:581 calls_made:1 call_cycle:0 10:09:26 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:09:26 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:581 calls_made:1 call_cycle:0 10:09:26 16 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:581 calls_made:1 call_cycle:0 2233.4900 -15800.8220 04/16/17 10:03:00 UTC) to sdrifter@soest.hawaii.edu 10:09:26 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:581 calls_made:1 call_cycle:0 10:09:26 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:09:26 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:581 calls_made:1 call_cycle:0 10:09:26 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:09:26 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:581 calls_made:1 call_cycle:0 10:09:26 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:09:26 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:581 calls_made:1 call_cycle:0 10:09:26 16 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:09:26 16 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:09:35 16 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:09:37 16 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:09:37 16 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:09:37 16 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:09:37 16 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:09:37 16 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:09:42 16 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0581lz 10:09:42 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0581lz.x00 10:09:42 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0581lz.x01 10:09:42 16 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0581lz.r in process_file_group 10:09:42 16 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260581.log 10:09:42 16 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:09:42 16 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0581dz 10:09:42 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0581dz.x00 10:09:42 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0581dz.x01 10:09:42 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0581dz.x02 10:09:42 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0581dz.x03 10:09:42 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0581dz.x04 10:09:42 16 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0581dz.r in process_file_group 10:09:42 16 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [581] 10:09:42 16 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [581] 10:09:43 16 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260581) for profiles 10:09:43 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 10:09:43 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/692) 691 692 to QC_BAD because CT out of water 10:09:43 16 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.097m) 10:09:43 16 Apr 2017 UTC: INFO: QC.py(365): Changed (3/692) 5 277 691 to QC_PROBABLY_BAD because raw temperature spikes 10:09:43 16 Apr 2017 UTC: INFO: QC.py(408): Changed (1/692) 277 to QC_PROBABLY_BAD because raw conductivity spikes 10:09:43 16 Apr 2017 UTC: INFO: QC.py(180): Changed (3/692) 5 277 691 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 10:09:43 16 Apr 2017 UTC: INFO: QC.py(180): Changed (2/692) 691 692 to QC_BAD because changed raw cond implies changed raw salinity 10:09:43 16 Apr 2017 UTC: INFO: QC.py(365): Changed (3/692) 5 277 691 to QC_INTERPOLATED because temperature spikes 10:09:43 16 Apr 2017 UTC: INFO: QC.py(408): Changed (1/692) 277 to QC_INTERPOLATED because conductivity spikes 10:09:43 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/692) 261:265 to QC_BAD because slow apogee CT flow 10:09:43 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/692) 1:6 to QC_BAD because prior to dive start 10:09:43 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/692) 690 to QC_BAD because end of climb 10:09:43 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/692) 1:6 261:265 690:692 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:09:43 16 Apr 2017 UTC: INFO: QC.py(180): Changed (14/692) 1:6 261:265 690:692 to QC_BAD because changed corrected salin implies changed speed 10:09:44 16 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 10:09:44 16 Apr 2017 UTC: INFO: QC.py(180): Changed (1/692) 277 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 10:09:44 16 Apr 2017 UTC: INFO: QC.py(180): Changed (1/692) 277 to QC_INTERPOLATED because changed corrected temp implies changed speed 10:09:44 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.09 cm/s 10:09:44 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.65 cm/s 10:09:44 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:09:44 16 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (205/692) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:09:44 16 Apr 2017 UTC: INFO: QC.py(180): Changed (2/692) 5 691 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 10:09:44 16 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (205/692) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 10:09:44 16 Apr 2017 UTC: INFO: QC.py(180): Changed (2/692) 5 691 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 10:09:44 16 Apr 2017 UTC: INFO: QC.py(180): Changed (14/692) 1:6 261:265 690:692 to QC_BAD because changed salinity implies changed optode oxygen 10:09:44 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:09:44 16 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:09:44 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 10:09:44 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 581: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.02% reduction 10:09:44 16 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.581 10:09:44 16 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:09:44 16 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:09:44 16 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:09:45 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 10:09:45 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 10:14:46 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 10:14:48 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 10:14:48 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 10:15:57 16 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:15:57 16 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:15:57 16 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 10:15:57 16 Apr 2017 UTC /home/sg626/p6260581.log /home/sg626/p6260581.eng /home/sg626/p6260581.asc /home/sg626/p6260581.pro /home/sg626/p6260581.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 10:15:57 16 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:15:57 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:15:57 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:15:57 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:15:57 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:15:57 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:15:57 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:15:57 16 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:15:57 16 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:15:57 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:15:57 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:15:57 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:15:57 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:15:57 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:15:57 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:15:57 16 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:15:57 16 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:15:57 16 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:15:57 16 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:15:57 16 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:15:57 16 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:15:57 16 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:15:57 16 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:15:57 16 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 10:15:57 16 Apr 2017 UTC 13:56:07 16 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 3002 13:56:07 16 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:59:19 16 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 3137 13:59:19 16 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:59:19 16 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:59:19 16 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:59:19 16 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:59:20 16 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170416035919 ] 13:59:20 16 Apr 2017 UTC: INFO: Base.py(1333): PID:3145 13:59:20 16 Apr 2017 UTC: INFO: Base.py(1375): Started processing 13:59:20 16 Apr 2017 UTC 13:59:20 16 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:59:21 16 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:59:21 16 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:59:21 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:59:21 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:582 calls_made:1 call_cycle:0 13:59:21 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:59:21 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:582 calls_made:1 call_cycle:0 13:59:21 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:59:21 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:582 calls_made:1 call_cycle:0 13:59:21 16 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:582 calls_made:1 call_cycle:0 2233.1520 -15800.5880 04/16/17 13:53:38 UTC) to sdrifter@soest.hawaii.edu 13:59:21 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:582 calls_made:1 call_cycle:0 13:59:21 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:59:21 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:582 calls_made:1 call_cycle:0 13:59:21 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:59:21 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:582 calls_made:1 call_cycle:0 13:59:21 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:59:21 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:582 calls_made:1 call_cycle:0 13:59:21 16 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:59:21 16 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:59:31 16 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:59:32 16 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:59:32 16 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:59:32 16 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:59:32 16 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:59:32 16 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:59:38 16 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0582lz 13:59:38 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0582lz.x00 13:59:38 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0582lz.x01 13:59:38 16 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0582lz.r in process_file_group 13:59:38 16 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260582.log 13:59:38 16 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:59:38 16 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0582dz 13:59:38 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0582dz.x00 13:59:38 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0582dz.x01 13:59:38 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0582dz.x02 13:59:38 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0582dz.x03 13:59:38 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0582dz.x04 13:59:38 16 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0582dz.r in process_file_group 13:59:38 16 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [582] 13:59:38 16 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [582] 13:59:38 16 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260582) for profiles 13:59:38 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:59:38 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/654) 652:654 to QC_BAD because CT out of water 13:59:38 16 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.094m) 13:59:38 16 Apr 2017 UTC: INFO: QC.py(365): Changed (3/654) 2 3 653 to QC_PROBABLY_BAD because raw temperature spikes 13:59:38 16 Apr 2017 UTC: INFO: QC.py(408): Changed (1/654) 213 to QC_PROBABLY_BAD because raw conductivity spikes 13:59:38 16 Apr 2017 UTC: INFO: QC.py(180): Changed (3/654) 2 3 653 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:59:38 16 Apr 2017 UTC: INFO: QC.py(180): Changed (1/654) 213 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 13:59:38 16 Apr 2017 UTC: INFO: QC.py(180): Changed (3/654) 652:654 to QC_BAD because changed raw cond implies changed raw salinity 13:59:38 16 Apr 2017 UTC: INFO: QC.py(365): Changed (3/654) 2 3 653 to QC_INTERPOLATED because temperature spikes 13:59:38 16 Apr 2017 UTC: INFO: QC.py(408): Changed (1/654) 213 to QC_INTERPOLATED because conductivity spikes 13:59:38 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/654) 270:274 to QC_BAD because slow apogee CT flow 13:59:38 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/654) 1:6 to QC_BAD because prior to dive start 13:59:38 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/654) 1:6 270:274 652:654 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:59:38 16 Apr 2017 UTC: INFO: QC.py(180): Changed (14/654) 1:6 270:274 652:654 to QC_BAD because changed corrected salin implies changed speed 13:59:39 16 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:59:39 16 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 582 interp_salinity data_points in_between 383 411 % suspect thermal-inertia points 399 13:59:39 16 Apr 2017 UTC: INFO: QC.py(180): Changed (1/654) 213 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 13:59:39 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.69 cm/s 13:59:39 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.93 cm/s 13:59:39 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:59:39 16 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (203/654) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:59:39 16 Apr 2017 UTC: INFO: QC.py(180): Changed (3/654) 2 3 653 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:59:39 16 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (203/654) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:59:39 16 Apr 2017 UTC: INFO: QC.py(180): Changed (3/654) 2 3 653 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:59:39 16 Apr 2017 UTC: INFO: QC.py(180): Changed (14/654) 1:6 270:274 652:654 to QC_BAD because changed salinity implies changed optode oxygen 13:59:39 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:59:39 16 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:59:39 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:59:40 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 582: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.14% reduction 13:59:40 16 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.582 13:59:40 16 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:59:40 16 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:59:40 16 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:59:40 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:59:40 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 14:04:42 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 14:04:44 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 14:04:44 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 14:05:53 16 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:05:53 16 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:05:53 16 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:05:53 16 Apr 2017 UTC /home/sg626/p6260582.log /home/sg626/p6260582.eng /home/sg626/p6260582.asc /home/sg626/p6260582.pro /home/sg626/p6260582.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 14:05:53 16 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:05:53 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:05:53 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:05:53 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:05:53 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:05:53 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:05:53 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:05:53 16 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:05:53 16 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:05:53 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:05:53 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:05:53 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:05:53 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:05:53 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:05:53 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:05:53 16 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:05:53 16 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:05:53 16 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:05:53 16 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:05:53 16 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:05:53 16 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:05:53 16 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:05:53 16 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:05:53 16 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 14:05:53 16 Apr 2017 UTC 17:43:40 16 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 10405 17:43:40 16 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:46:50 16 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 10512 17:46:50 16 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:46:50 16 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:46:50 16 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:46:50 16 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:46:50 16 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170416074649 ] 17:46:50 16 Apr 2017 UTC: INFO: Base.py(1333): PID:10520 17:46:50 16 Apr 2017 UTC: INFO: Base.py(1375): Started processing 17:46:50 16 Apr 2017 UTC 17:46:50 16 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:46:52 16 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:46:52 16 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:46:52 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:46:52 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:583 calls_made:1 call_cycle:0 17:46:52 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:46:52 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:583 calls_made:1 call_cycle:0 17:46:52 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:46:52 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:583 calls_made:1 call_cycle:0 17:46:52 16 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:583 calls_made:1 call_cycle:0 2233.1590 -15800.5010 04/16/17 17:41:00 UTC) to sdrifter@soest.hawaii.edu 17:46:52 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:583 calls_made:1 call_cycle:0 17:46:52 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:46:52 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:583 calls_made:1 call_cycle:0 17:46:52 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:46:52 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:583 calls_made:1 call_cycle:0 17:46:52 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:46:52 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:583 calls_made:1 call_cycle:0 17:46:52 16 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:46:52 16 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:47:01 16 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:47:03 16 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:47:03 16 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:47:03 16 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:47:03 16 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:47:03 16 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:47:08 16 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0583lz 17:47:08 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0583lz.x00 17:47:08 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0583lz.x01 17:47:08 16 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0583lz.r in process_file_group 17:47:08 16 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260583.log 17:47:08 16 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:47:08 16 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0583dz 17:47:08 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0583dz.x00 17:47:08 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0583dz.x01 17:47:08 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0583dz.x02 17:47:08 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0583dz.x03 17:47:08 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0583dz.x04 17:47:08 16 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0583dz.r in process_file_group 17:47:08 16 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [583] 17:47:08 16 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [583] 17:47:09 16 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260583) for profiles 17:47:09 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:47:09 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/647) 645:647 to QC_BAD because CT out of water 17:47:09 16 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.130m) 17:47:09 16 Apr 2017 UTC: INFO: QC.py(365): Changed (6/647) 2:4 305 306 646 to QC_PROBABLY_BAD because raw temperature spikes 17:47:09 16 Apr 2017 UTC: INFO: QC.py(377): Changed (2/647) 645 647 to QC_BAD because raw salinity below bound 17:47:09 16 Apr 2017 UTC: INFO: QC.py(408): Changed (3/647) 305 306 414 to QC_PROBABLY_BAD because raw conductivity spikes 17:47:09 16 Apr 2017 UTC: INFO: QC.py(180): Changed (6/647) 2:4 305 306 646 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:47:09 16 Apr 2017 UTC: INFO: QC.py(180): Changed (1/647) 414 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 17:47:09 16 Apr 2017 UTC: INFO: QC.py(180): Changed (1/647) 646 to QC_BAD because changed raw cond implies changed raw salinity 17:47:09 16 Apr 2017 UTC: INFO: QC.py(365): Changed (6/647) 2:4 305 306 646 to QC_INTERPOLATED because temperature spikes 17:47:09 16 Apr 2017 UTC: INFO: QC.py(377): Changed (2/647) 645 647 to QC_BAD because salinity below bound 17:47:09 16 Apr 2017 UTC: INFO: QC.py(408): Changed (3/647) 305 306 414 to QC_INTERPOLATED because conductivity spikes 17:47:09 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/647) 257:261 to QC_BAD because slow apogee CT flow 17:47:09 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/647) 1:6 to QC_BAD because prior to dive start 17:47:09 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/647) 1:6 257:261 645:647 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:47:09 16 Apr 2017 UTC: INFO: QC.py(180): Changed (14/647) 1:6 257:261 645:647 to QC_BAD because changed corrected salin implies changed speed 17:47:09 16 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:47:09 16 Apr 2017 UTC: INFO: QC.py(180): Changed (2/647) 305 306 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 17:47:09 16 Apr 2017 UTC: INFO: QC.py(180): Changed (1/647) 414 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 17:47:09 16 Apr 2017 UTC: INFO: QC.py(180): Changed (2/647) 305 306 to QC_INTERPOLATED because changed corrected temp implies changed speed 17:47:09 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.12 cm/s 17:47:09 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.17 cm/s 17:47:09 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:47:09 16 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (197/647) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:47:09 16 Apr 2017 UTC: INFO: QC.py(180): Changed (5/647) 2:4 306 646 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:47:09 16 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (197/647) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:47:09 16 Apr 2017 UTC: INFO: QC.py(180): Changed (5/647) 2:4 306 646 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:47:09 16 Apr 2017 UTC: INFO: QC.py(180): Changed (14/647) 1:6 257:261 645:647 to QC_BAD because changed salinity implies changed optode oxygen 17:47:09 16 Apr 2017 UTC: INFO: QC.py(180): Changed (1/647) 414 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 17:47:09 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:47:09 16 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:47:09 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:47:10 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 583: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.16% reduction 17:47:10 16 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.583 17:47:10 16 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:47:10 16 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:47:10 16 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:47:10 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:47:10 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:52:13 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 17:52:14 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:52:14 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:53:24 16 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:53:24 16 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:53:24 16 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:53:24 16 Apr 2017 UTC /home/sg626/p6260583.log /home/sg626/p6260583.eng /home/sg626/p6260583.asc /home/sg626/p6260583.pro /home/sg626/p6260583.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:53:24 16 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:53:24 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:53:24 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:53:24 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:53:24 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:53:24 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:53:24 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:53:24 16 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:53:24 16 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:53:24 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:53:24 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:53:24 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:53:24 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:53:24 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:53:24 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:53:24 16 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:53:24 16 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:53:24 16 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:53:24 16 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:53:24 16 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:53:24 16 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:53:24 16 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:53:24 16 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:53:24 16 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 17:53:24 16 Apr 2017 UTC 21:35:32 16 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 17671 21:35:32 16 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:38:52 16 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 17795 21:38:52 16 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:38:52 16 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:38:52 16 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:38:52 16 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:38:52 16 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170416113852 ] 21:38:52 16 Apr 2017 UTC: INFO: Base.py(1333): PID:17803 21:38:52 16 Apr 2017 UTC: INFO: Base.py(1375): Started processing 21:38:52 16 Apr 2017 UTC 21:38:52 16 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:38:54 16 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:38:54 16 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:38:54 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:38:54 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:584 calls_made:1 call_cycle:0 21:38:54 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:38:54 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:584 calls_made:1 call_cycle:0 21:38:54 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:38:54 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:584 calls_made:1 call_cycle:0 21:38:54 16 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:584 calls_made:1 call_cycle:0 2233.2970 -15800.1720 04/16/17 21:33:00 UTC) to sdrifter@soest.hawaii.edu 21:38:54 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:584 calls_made:1 call_cycle:0 21:38:54 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:38:54 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:584 calls_made:1 call_cycle:0 21:38:54 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:38:54 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:584 calls_made:1 call_cycle:0 21:38:54 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:38:54 16 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:584 calls_made:1 call_cycle:0 21:38:54 16 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:38:54 16 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:39:03 16 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:39:05 16 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:39:05 16 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:39:05 16 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:39:05 16 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:39:05 16 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:39:10 16 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0584lz 21:39:10 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0584lz.x00 21:39:10 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0584lz.x01 21:39:10 16 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0584lz.r in process_file_group 21:39:10 16 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260584.log 21:39:10 16 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:39:10 16 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0584dz 21:39:10 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0584dz.x00 21:39:10 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0584dz.x01 21:39:10 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0584dz.x02 21:39:10 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0584dz.x03 21:39:10 16 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0584dz.x04 21:39:10 16 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0584dz.r in process_file_group 21:39:11 16 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [584] 21:39:11 16 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [584] 21:39:11 16 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260584) for profiles 21:39:11 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:39:11 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/658) 657 658 to QC_BAD because CT out of water 21:39:11 16 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.055m) 21:39:11 16 Apr 2017 UTC: INFO: QC.py(365): Changed (10/658) 2 3 212 217 220 221 284 655:657 to QC_PROBABLY_BAD because raw temperature spikes 21:39:11 16 Apr 2017 UTC: INFO: QC.py(408): Changed (5/658) 212 216 217 221 284 to QC_PROBABLY_BAD because raw conductivity spikes 21:39:11 16 Apr 2017 UTC: INFO: QC.py(180): Changed (10/658) 2 3 212 217 220 221 284 655:657 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:39:11 16 Apr 2017 UTC: INFO: QC.py(180): Changed (1/658) 216 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 21:39:11 16 Apr 2017 UTC: INFO: QC.py(180): Changed (2/658) 657 658 to QC_BAD because changed raw cond implies changed raw salinity 21:39:11 16 Apr 2017 UTC: INFO: QC.py(365): Changed (10/658) 2 3 212 217 220 221 284 655:657 to QC_INTERPOLATED because temperature spikes 21:39:11 16 Apr 2017 UTC: INFO: QC.py(408): Changed (5/658) 212 216 217 221 284 to QC_INTERPOLATED because conductivity spikes 21:39:11 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/658) 263:268 to QC_BAD because slow apogee CT flow 21:39:11 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/658) 1:6 to QC_BAD because prior to dive start 21:39:11 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/658) 655 656 to QC_BAD because end of climb 21:39:11 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/658) 1:6 263:268 655:658 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:39:11 16 Apr 2017 UTC: INFO: QC.py(180): Changed (16/658) 1:6 263:268 655:658 to QC_BAD because changed corrected salin implies changed speed 21:39:12 16 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:39:12 16 Apr 2017 UTC: INFO: QC.py(180): Changed (5/658) 212 217 220 221 284 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 21:39:12 16 Apr 2017 UTC: INFO: QC.py(180): Changed (1/658) 216 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 21:39:12 16 Apr 2017 UTC: INFO: QC.py(180): Changed (5/658) 212 217 220 221 284 to QC_INTERPOLATED because changed corrected temp implies changed speed 21:39:12 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.56 cm/s 21:39:12 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.34 cm/s 21:39:12 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:39:12 16 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (205/658) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:39:12 16 Apr 2017 UTC: INFO: QC.py(180): Changed (6/658) 2 3 221 655:657 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:39:12 16 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (205/658) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:39:12 16 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/658) 652 657 to QC_BAD because bad aa4330 oyxgen 21:39:12 16 Apr 2017 UTC: INFO: QC.py(180): Changed (5/658) 2 3 221 655 656 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:39:12 16 Apr 2017 UTC: INFO: QC.py(180): Changed (15/658) 1:6 263:268 655 656 658 to QC_BAD because changed salinity implies changed optode oxygen 21:39:12 16 Apr 2017 UTC: INFO: QC.py(180): Changed (1/658) 216 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 21:39:12 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:39:12 16 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:39:12 16 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:39:12 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 584: Data set size for profile, binned and kkyy files reduced by 16 points, a 2.43% reduction 21:39:12 16 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.584 21:39:12 16 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:39:12 16 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:39:12 16 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:39:13 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:39:13 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 21:44:17 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 21:44:19 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 21:44:19 16 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 21:45:29 16 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:45:29 16 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:45:29 16 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:45:29 16 Apr 2017 UTC /home/sg626/p6260584.log /home/sg626/p6260584.eng /home/sg626/p6260584.asc /home/sg626/p6260584.pro /home/sg626/p6260584.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 21:45:29 16 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:45:29 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:45:29 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:45:29 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:45:29 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:45:29 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:45:29 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:45:29 16 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:45:29 16 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:45:29 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:45:29 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:45:29 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:45:29 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:45:29 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:45:29 16 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:45:29 16 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:45:29 16 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:45:29 16 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:45:29 16 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:45:29 16 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:45:29 16 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:45:29 16 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:45:29 16 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:45:29 16 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 21:45:29 16 Apr 2017 UTC 01:30:51 17 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 24953 01:30:51 17 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:34:12 17 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 25061 01:34:12 17 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:34:12 17 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:34:12 17 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:34:12 17 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:34:12 17 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170416153411 ] 01:34:12 17 Apr 2017 UTC: INFO: Base.py(1333): PID:25069 01:34:12 17 Apr 2017 UTC: INFO: Base.py(1375): Started processing 01:34:12 17 Apr 2017 UTC 01:34:12 17 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:34:14 17 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:34:14 17 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:34:14 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:34:14 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:585 calls_made:1 call_cycle:0 01:34:14 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:34:14 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:585 calls_made:1 call_cycle:0 01:34:14 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:34:14 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:585 calls_made:1 call_cycle:0 01:34:14 17 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:585 calls_made:1 call_cycle:0 2233.3060 -15800.5300 04/17/17 01:28:19 UTC) to sdrifter@soest.hawaii.edu 01:34:14 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:585 calls_made:1 call_cycle:0 01:34:14 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:34:14 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:585 calls_made:1 call_cycle:0 01:34:14 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:34:14 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:585 calls_made:1 call_cycle:0 01:34:14 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:34:14 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:585 calls_made:1 call_cycle:0 01:34:14 17 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:34:14 17 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:34:23 17 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:34:25 17 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:34:25 17 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:34:25 17 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:34:25 17 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:34:25 17 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:34:30 17 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0585lz 01:34:30 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0585lz.x00 01:34:30 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0585lz.x01 01:34:30 17 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0585lz.r in process_file_group 01:34:30 17 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260585.log 01:34:30 17 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:34:30 17 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0585dz 01:34:30 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0585dz.x00 01:34:30 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0585dz.x01 01:34:30 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0585dz.x02 01:34:30 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0585dz.x03 01:34:30 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0585dz.x04 01:34:30 17 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0585dz.r in process_file_group 01:34:31 17 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [585] 01:34:31 17 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [585] 01:34:31 17 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260585) for profiles 01:34:31 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:34:31 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/683) 682 683 to QC_BAD because CT out of water 01:34:31 17 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.162m) 01:34:31 17 Apr 2017 UTC: INFO: QC.py(365): Changed (7/683) 214 223 224 232 310 681 682 to QC_PROBABLY_BAD because raw temperature spikes 01:34:31 17 Apr 2017 UTC: INFO: QC.py(377): Changed (1/683) 683 to QC_BAD because raw salinity below bound 01:34:31 17 Apr 2017 UTC: INFO: QC.py(408): Changed (2/683) 223 310 to QC_PROBABLY_BAD because raw conductivity spikes 01:34:31 17 Apr 2017 UTC: INFO: QC.py(180): Changed (7/683) 214 223 224 232 310 681 682 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:34:31 17 Apr 2017 UTC: INFO: QC.py(180): Changed (1/683) 682 to QC_BAD because changed raw cond implies changed raw salinity 01:34:31 17 Apr 2017 UTC: INFO: QC.py(365): Changed (7/683) 214 223 224 232 310 681 682 to QC_INTERPOLATED because temperature spikes 01:34:31 17 Apr 2017 UTC: INFO: QC.py(377): Changed (1/683) 683 to QC_BAD because salinity below bound 01:34:31 17 Apr 2017 UTC: INFO: QC.py(408): Changed (2/683) 223 310 to QC_INTERPOLATED because conductivity spikes 01:34:31 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/683) 269:273 to QC_BAD because slow apogee CT flow 01:34:31 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/683) 1:6 to QC_BAD because prior to dive start 01:34:31 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/683) 680 681 to QC_BAD because end of climb 01:34:31 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/683) 1:6 269:273 680:683 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:34:31 17 Apr 2017 UTC: INFO: QC.py(180): Changed (15/683) 1:6 269:273 680:683 to QC_BAD because changed corrected salin implies changed speed 01:34:32 17 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:34:32 17 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 585 interp_salinity data_points in_between 140 168 % suspect thermal-inertia points 142 01:34:32 17 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 585 interp_salinity data_points in_between 363 411 % suspect thermal-inertia points 394 395 01:34:32 17 Apr 2017 UTC: INFO: QC.py(180): Changed (5/683) 214 223 224 232 310 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 01:34:32 17 Apr 2017 UTC: INFO: QC.py(180): Changed (5/683) 214 223 224 232 310 to QC_INTERPOLATED because changed corrected temp implies changed speed 01:34:32 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.82 cm/s 01:34:32 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.06 cm/s 01:34:32 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:34:32 17 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (206/683) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:34:32 17 Apr 2017 UTC: INFO: QC.py(180): Changed (2/683) 681 682 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 01:34:32 17 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (206/683) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 01:34:32 17 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/683) 680 to QC_BAD because bad aa4330 oyxgen 01:34:32 17 Apr 2017 UTC: INFO: QC.py(180): Changed (2/683) 681 682 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 01:34:32 17 Apr 2017 UTC: INFO: QC.py(180): Changed (14/683) 1:6 269:273 681:683 to QC_BAD because changed salinity implies changed optode oxygen 01:34:32 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:34:32 17 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:34:32 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:34:32 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 585: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.20% reduction 01:34:32 17 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.585 01:34:32 17 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:34:32 17 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:34:32 17 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:34:33 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:34:33 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 01:39:37 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 01:39:39 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 01:39:39 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 01:40:49 17 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:40:49 17 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:40:49 17 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:40:49 17 Apr 2017 UTC /home/sg626/p6260585.log /home/sg626/p6260585.eng /home/sg626/p6260585.asc /home/sg626/p6260585.pro /home/sg626/p6260585.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 01:40:49 17 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:40:49 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:40:49 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:40:49 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:40:49 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:40:49 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:40:49 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:40:49 17 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:40:49 17 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:40:49 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:40:49 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:40:49 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:40:49 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:40:49 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:40:49 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:40:49 17 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:40:49 17 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:40:49 17 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:40:49 17 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:40:49 17 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:40:49 17 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:40:49 17 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:40:49 17 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:40:49 17 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 01:40:49 17 Apr 2017 UTC 05:26:52 17 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 32052 05:26:52 17 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:30:03 17 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 32308 05:30:03 17 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:30:03 17 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:30:03 17 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:30:03 17 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:30:03 17 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170416193002 ] 05:30:03 17 Apr 2017 UTC: INFO: Base.py(1333): PID:32316 05:30:03 17 Apr 2017 UTC: INFO: Base.py(1375): Started processing 05:30:03 17 Apr 2017 UTC 05:30:03 17 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:30:05 17 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:30:05 17 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:30:05 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:30:05 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:586 calls_made:1 call_cycle:0 05:30:05 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:30:05 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:586 calls_made:1 call_cycle:0 05:30:05 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:30:05 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:586 calls_made:1 call_cycle:0 05:30:05 17 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:586 calls_made:1 call_cycle:0 2233.0360 -15800.4450 04/17/17 05:24:00 UTC) to sdrifter@soest.hawaii.edu 05:30:05 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:586 calls_made:1 call_cycle:0 05:30:05 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:30:05 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:586 calls_made:1 call_cycle:0 05:30:05 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:30:05 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:586 calls_made:1 call_cycle:0 05:30:05 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:30:05 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:586 calls_made:1 call_cycle:0 05:30:05 17 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:30:05 17 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:30:14 17 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:30:16 17 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:30:16 17 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:30:16 17 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:30:16 17 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:30:16 17 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:30:21 17 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0586lz 05:30:21 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0586lz.x00 05:30:21 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0586lz.x01 05:30:21 17 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0586lz.r in process_file_group 05:30:21 17 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260586.log 05:30:21 17 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:30:21 17 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0586dz 05:30:21 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0586dz.x00 05:30:21 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0586dz.x01 05:30:21 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0586dz.x02 05:30:21 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0586dz.x03 05:30:21 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0586dz.x04 05:30:21 17 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0586dz.r in process_file_group 05:30:22 17 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [586] 05:30:22 17 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [586] 05:30:22 17 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260586) for profiles 05:30:22 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:30:22 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/687) 685 686 to QC_BAD because CT out of water 05:30:22 17 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.147m) 05:30:22 17 Apr 2017 UTC: INFO: QC.py(365): Changed (5/687) 206 215 300 302 310 to QC_PROBABLY_BAD because raw temperature spikes 05:30:22 17 Apr 2017 UTC: INFO: QC.py(377): Changed (1/687) 686 to QC_BAD because raw salinity below bound 05:30:22 17 Apr 2017 UTC: INFO: QC.py(408): Changed (7/687) 206 214 215 299 300 302 310 to QC_PROBABLY_BAD because raw conductivity spikes 05:30:22 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/687) 687 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 05:30:22 17 Apr 2017 UTC: INFO: QC.py(180): Changed (5/687) 206 215 300 302 310 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:30:22 17 Apr 2017 UTC: INFO: QC.py(180): Changed (2/687) 214 299 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 05:30:22 17 Apr 2017 UTC: INFO: QC.py(180): Changed (2/687) 685 687 to QC_BAD because changed raw cond implies changed raw salinity 05:30:22 17 Apr 2017 UTC: INFO: QC.py(365): Changed (5/687) 206 215 300 302 310 to QC_INTERPOLATED because temperature spikes 05:30:22 17 Apr 2017 UTC: INFO: QC.py(377): Changed (1/687) 686 to QC_BAD because salinity below bound 05:30:22 17 Apr 2017 UTC: INFO: QC.py(408): Changed (7/687) 206 214 215 299 300 302 310 to QC_INTERPOLATED because conductivity spikes 05:30:22 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/687) 687 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 05:30:22 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/687) 258:262 to QC_BAD because slow apogee CT flow 05:30:22 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/687) 1:6 to QC_BAD because prior to dive start 05:30:22 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/687) 683 684 to QC_BAD because end of climb 05:30:22 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/687) 1:6 258:262 683:687 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:30:22 17 Apr 2017 UTC: INFO: QC.py(180): Changed (16/687) 1:6 258:262 683:687 to QC_BAD because changed corrected salin implies changed speed 05:30:23 17 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:30:23 17 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 586 interp_salinity data_points in_between 361 399 % suspect thermal-inertia points 377 05:30:23 17 Apr 2017 UTC: INFO: QC.py(180): Changed (5/687) 206 215 300 302 310 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 05:30:23 17 Apr 2017 UTC: INFO: QC.py(180): Changed (2/687) 214 299 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 05:30:23 17 Apr 2017 UTC: INFO: QC.py(180): Changed (5/687) 206 215 300 302 310 to QC_INTERPOLATED because changed corrected temp implies changed speed 05:30:23 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.69 cm/s 05:30:23 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.20 cm/s 05:30:23 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:30:23 17 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (204/687) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:30:23 17 Apr 2017 UTC: INFO: QC.py(180): Changed (1/687) 206 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:30:23 17 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (204/687) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:30:23 17 Apr 2017 UTC: INFO: QC.py(180): Changed (1/687) 206 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:30:23 17 Apr 2017 UTC: INFO: QC.py(180): Changed (16/687) 1:6 258:262 683:687 to QC_BAD because changed salinity implies changed optode oxygen 05:30:23 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:30:23 17 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:30:23 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 05:30:23 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 586: Data set size for profile, binned and kkyy files reduced by 16 points, a 2.33% reduction 05:30:23 17 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.586 05:30:23 17 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:30:23 17 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:30:23 17 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:30:24 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 05:30:24 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 05:35:26 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 05:35:28 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 05:35:28 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 05:36:37 17 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:36:37 17 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:36:37 17 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:36:37 17 Apr 2017 UTC /home/sg626/p6260586.log /home/sg626/p6260586.eng /home/sg626/p6260586.asc /home/sg626/p6260586.pro /home/sg626/p6260586.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 05:36:37 17 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:36:37 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:36:37 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:36:37 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:36:37 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:36:37 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:36:37 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:36:37 17 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:36:37 17 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:36:37 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:36:37 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:36:37 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:36:37 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:36:37 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:36:37 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:36:37 17 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:36:37 17 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:36:37 17 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:36:37 17 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:36:37 17 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:36:37 17 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:36:37 17 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:36:37 17 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:36:37 17 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 05:36:37 17 Apr 2017 UTC 09:16:28 17 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 7208 09:16:28 17 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:19:45 17 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 7329 09:19:45 17 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:19:45 17 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:19:45 17 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:19:45 17 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:19:45 17 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170416231945 ] 09:19:45 17 Apr 2017 UTC: INFO: Base.py(1333): PID:7337 09:19:45 17 Apr 2017 UTC: INFO: Base.py(1375): Started processing 09:19:45 17 Apr 2017 UTC 09:19:45 17 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:19:47 17 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:19:47 17 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:19:47 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:19:47 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:587 calls_made:1 call_cycle:0 09:19:47 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:19:47 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:587 calls_made:1 call_cycle:0 09:19:47 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:19:47 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:587 calls_made:1 call_cycle:0 09:19:47 17 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:587 calls_made:1 call_cycle:0 2233.3970 -15800.6120 04/17/17 09:14:00 UTC) to sdrifter@soest.hawaii.edu 09:19:47 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:587 calls_made:1 call_cycle:0 09:19:47 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:19:47 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:587 calls_made:1 call_cycle:0 09:19:47 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:19:47 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:587 calls_made:1 call_cycle:0 09:19:47 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:19:47 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:587 calls_made:1 call_cycle:0 09:19:47 17 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:19:47 17 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:19:57 17 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:19:58 17 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:19:58 17 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:19:58 17 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:19:58 17 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:19:58 17 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:20:04 17 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0587lz 09:20:04 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0587lz.x00 09:20:04 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0587lz.x01 09:20:04 17 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0587lz.r in process_file_group 09:20:04 17 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260587.log 09:20:04 17 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 09:20:04 17 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0587dz 09:20:04 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0587dz.x00 09:20:04 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0587dz.x01 09:20:04 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0587dz.x02 09:20:04 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0587dz.x03 09:20:04 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0587dz.x04 09:20:04 17 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0587dz.r in process_file_group 09:20:04 17 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [587] 09:20:04 17 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [587] 09:20:04 17 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260587) for profiles 09:20:04 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 09:20:04 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/688) 685 686 688 to QC_BAD because CT out of water 09:20:04 17 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.123m) 09:20:04 17 Apr 2017 UTC: INFO: QC.py(365): Changed (6/688) 5 135 293 305 307 686 to QC_PROBABLY_BAD because raw temperature spikes 09:20:04 17 Apr 2017 UTC: INFO: QC.py(377): Changed (1/688) 687 to QC_BAD because raw salinity below bound 09:20:04 17 Apr 2017 UTC: INFO: QC.py(388): Changed (1/688) 687 to QC_BAD because bad raw salinity indicates raw conductivity issues 09:20:04 17 Apr 2017 UTC: INFO: QC.py(408): Changed (3/688) 135 305 307 to QC_PROBABLY_BAD because raw conductivity spikes 09:20:05 17 Apr 2017 UTC: INFO: QC.py(180): Changed (6/688) 5 135 293 305 307 686 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 09:20:05 17 Apr 2017 UTC: INFO: QC.py(180): Changed (3/688) 685 686 688 to QC_BAD because changed raw cond implies changed raw salinity 09:20:05 17 Apr 2017 UTC: INFO: QC.py(365): Changed (6/688) 5 135 293 305 307 686 to QC_INTERPOLATED because temperature spikes 09:20:05 17 Apr 2017 UTC: INFO: QC.py(377): Changed (1/688) 687 to QC_BAD because salinity below bound 09:20:05 17 Apr 2017 UTC: INFO: QC.py(388): Changed (1/688) 687 to QC_BAD because bad salinity indicates conductivity issues 09:20:05 17 Apr 2017 UTC: INFO: QC.py(408): Changed (3/688) 135 305 307 to QC_INTERPOLATED because conductivity spikes 09:20:05 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/688) 266:270 to QC_BAD because slow apogee CT flow 09:20:05 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/688) 1:6 to QC_BAD because prior to dive start 09:20:05 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/688) 1:6 266:270 685:688 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:20:05 17 Apr 2017 UTC: INFO: QC.py(180): Changed (15/688) 1:6 266:270 685:688 to QC_BAD because changed corrected salin implies changed speed 09:20:05 17 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:20:05 17 Apr 2017 UTC: INFO: QC.py(180): Changed (4/688) 135 293 305 307 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 09:20:05 17 Apr 2017 UTC: INFO: QC.py(180): Changed (4/688) 135 293 305 307 to QC_INTERPOLATED because changed corrected temp implies changed speed 09:20:05 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.06 cm/s 09:20:05 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.13 cm/s 09:20:05 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:20:05 17 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (198/688) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:20:05 17 Apr 2017 UTC: INFO: QC.py(180): Changed (3/688) 5 135 686 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:20:05 17 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (198/688) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 09:20:05 17 Apr 2017 UTC: INFO: QC.py(180): Changed (3/688) 5 135 686 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:20:05 17 Apr 2017 UTC: INFO: QC.py(180): Changed (15/688) 1:6 266:270 685:688 to QC_BAD because changed salinity implies changed optode oxygen 09:20:05 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:20:05 17 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:20:05 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 09:20:06 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 587: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.18% reduction 09:20:06 17 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.587 09:20:06 17 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:20:06 17 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:20:06 17 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:20:06 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 09:20:06 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 09:25:10 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 09:25:12 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 09:25:12 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 09:26:22 17 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:26:22 17 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:26:22 17 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:26:22 17 Apr 2017 UTC /home/sg626/p6260587.log /home/sg626/p6260587.eng /home/sg626/p6260587.asc /home/sg626/p6260587.pro /home/sg626/p6260587.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 09:26:22 17 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:26:22 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:26:22 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:26:22 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:26:22 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:26:22 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:26:22 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:26:22 17 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:26:22 17 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:26:22 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:26:22 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 09:26:22 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:26:22 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 09:26:22 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:26:22 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 09:26:22 17 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:26:22 17 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:26:22 17 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:26:22 17 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:26:22 17 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:26:22 17 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:26:22 17 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:26:22 17 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:26:22 17 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 09:26:22 17 Apr 2017 UTC 13:09:30 17 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 14979 13:09:30 17 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:12:45 17 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 15254 13:12:45 17 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:12:45 17 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:12:45 17 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:12:45 17 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:12:45 17 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170417031244 ] 13:12:45 17 Apr 2017 UTC: INFO: Base.py(1333): PID:15262 13:12:45 17 Apr 2017 UTC: INFO: Base.py(1375): Started processing 13:12:45 17 Apr 2017 UTC 13:12:45 17 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:12:46 17 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:12:46 17 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:12:46 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:12:46 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:588 calls_made:1 call_cycle:0 13:12:46 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:12:46 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:588 calls_made:1 call_cycle:0 13:12:46 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:12:46 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:588 calls_made:1 call_cycle:0 13:12:46 17 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:588 calls_made:1 call_cycle:0 2233.3020 -15800.4980 04/17/17 13:07:01 UTC) to sdrifter@soest.hawaii.edu 13:12:46 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:588 calls_made:1 call_cycle:0 13:12:46 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:12:46 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:588 calls_made:1 call_cycle:0 13:12:46 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:12:46 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:588 calls_made:1 call_cycle:0 13:12:46 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:12:46 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:588 calls_made:1 call_cycle:0 13:12:46 17 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:12:46 17 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:12:56 17 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:12:58 17 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:12:58 17 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:12:58 17 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:12:58 17 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:12:58 17 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:13:03 17 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0588lz 13:13:03 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0588lz.x00 13:13:03 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0588lz.x01 13:13:03 17 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0588lz.r in process_file_group 13:13:03 17 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260588.log 13:13:03 17 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:13:03 17 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0588dz 13:13:03 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0588dz.x00 13:13:03 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0588dz.x01 13:13:03 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0588dz.x02 13:13:03 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0588dz.x03 13:13:03 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0588dz.x04 13:13:03 17 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0588dz.r in process_file_group 13:13:03 17 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [588] 13:13:03 17 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [588] 13:13:03 17 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260588) for profiles 13:13:03 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:13:04 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/689) 687 688 to QC_BAD because CT out of water 13:13:04 17 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.113m) 13:13:04 17 Apr 2017 UTC: INFO: QC.py(365): Changed (4/689) 3 245 314 688 to QC_PROBABLY_BAD because raw temperature spikes 13:13:04 17 Apr 2017 UTC: INFO: QC.py(408): Changed (1/689) 245 to QC_PROBABLY_BAD because raw conductivity spikes 13:13:04 17 Apr 2017 UTC: INFO: QC.py(180): Changed (4/689) 3 245 314 688 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:13:04 17 Apr 2017 UTC: INFO: QC.py(180): Changed (2/689) 687 688 to QC_BAD because changed raw cond implies changed raw salinity 13:13:04 17 Apr 2017 UTC: INFO: QC.py(365): Changed (4/689) 3 245 314 688 to QC_INTERPOLATED because temperature spikes 13:13:04 17 Apr 2017 UTC: INFO: QC.py(408): Changed (1/689) 245 to QC_INTERPOLATED because conductivity spikes 13:13:04 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/689) 277:282 to QC_BAD because slow apogee CT flow 13:13:04 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/689) 1:6 to QC_BAD because prior to dive start 13:13:04 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/689) 689 to QC_BAD because end of climb 13:13:04 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/689) 1:6 277:282 687:689 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:13:04 17 Apr 2017 UTC: INFO: QC.py(180): Changed (15/689) 1:6 277:282 687:689 to QC_BAD because changed corrected salin implies changed speed 13:13:04 17 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:13:04 17 Apr 2017 UTC: INFO: QC.py(180): Changed (2/689) 245 314 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 13:13:04 17 Apr 2017 UTC: INFO: QC.py(180): Changed (2/689) 245 314 to QC_INTERPOLATED because changed corrected temp implies changed speed 13:13:04 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.41 cm/s 13:13:04 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.35 cm/s 13:13:04 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:13:04 17 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (202/689) 153:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:13:04 17 Apr 2017 UTC: INFO: QC.py(180): Changed (2/689) 3 688 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:13:04 17 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (202/689) 153:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:13:04 17 Apr 2017 UTC: INFO: QC.py(180): Changed (2/689) 3 688 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:13:04 17 Apr 2017 UTC: INFO: QC.py(180): Changed (15/689) 1:6 277:282 687:689 to QC_BAD because changed salinity implies changed optode oxygen 13:13:04 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:13:04 17 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:13:04 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:13:05 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 588: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.18% reduction 13:13:05 17 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.588 13:13:05 17 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:13:05 17 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:13:05 17 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:13:05 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:13:05 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:18:08 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 13:18:10 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:18:10 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:19:20 17 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:19:20 17 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:19:20 17 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:19:20 17 Apr 2017 UTC /home/sg626/p6260588.log /home/sg626/p6260588.eng /home/sg626/p6260588.asc /home/sg626/p6260588.pro /home/sg626/p6260588.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:19:20 17 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:19:20 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:19:20 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:19:20 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:19:20 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:19:20 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:19:20 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:19:20 17 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:19:20 17 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:19:20 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:19:20 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:19:20 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:19:20 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:19:20 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:19:20 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:19:20 17 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:19:20 17 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:19:20 17 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:19:20 17 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:19:20 17 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:19:20 17 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:19:20 17 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:19:20 17 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:19:20 17 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 13:19:20 17 Apr 2017 UTC 16:53:52 17 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 22015 16:53:52 17 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:56:54 17 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 22129 16:56:54 17 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:56:54 17 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:56:54 17 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:56:54 17 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:56:54 17 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170417065653 ] 16:56:54 17 Apr 2017 UTC: INFO: Base.py(1333): PID:22137 16:56:54 17 Apr 2017 UTC: INFO: Base.py(1375): Started processing 16:56:54 17 Apr 2017 UTC 16:56:54 17 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:56:55 17 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:56:55 17 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:56:55 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:56:55 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:589 calls_made:1 call_cycle:0 16:56:55 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:56:55 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:589 calls_made:1 call_cycle:0 16:56:55 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:56:55 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:589 calls_made:1 call_cycle:0 16:56:55 17 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:589 calls_made:1 call_cycle:0 2233.4610 -15800.3360 04/17/17 16:51:30 UTC) to sdrifter@soest.hawaii.edu 16:56:55 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:589 calls_made:1 call_cycle:0 16:56:55 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:56:55 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:589 calls_made:1 call_cycle:0 16:56:55 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:56:55 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:589 calls_made:1 call_cycle:0 16:56:55 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:56:55 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:589 calls_made:1 call_cycle:0 16:56:55 17 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:56:55 17 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:57:05 17 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:57:06 17 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:57:06 17 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:57:06 17 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:57:06 17 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:57:06 17 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:57:12 17 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0589lz 16:57:12 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0589lz.x00 16:57:12 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0589lz.x01 16:57:12 17 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0589lz.r in process_file_group 16:57:12 17 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260589.log 16:57:12 17 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:57:12 17 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0589dz 16:57:12 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0589dz.x00 16:57:12 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0589dz.x01 16:57:12 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0589dz.x02 16:57:12 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0589dz.x03 16:57:12 17 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0589dz.r in process_file_group 16:57:12 17 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [589] 16:57:12 17 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [589] 16:57:13 17 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260589) for profiles 16:57:13 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:57:13 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/636) 635 to QC_BAD because CT out of water 16:57:13 17 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.073m) 16:57:13 17 Apr 2017 UTC: INFO: QC.py(365): Changed (9/636) 3 4 236 265 286 292 293 297 635 to QC_PROBABLY_BAD because raw temperature spikes 16:57:13 17 Apr 2017 UTC: INFO: QC.py(377): Changed (1/636) 635 to QC_BAD because raw salinity below bound 16:57:13 17 Apr 2017 UTC: INFO: QC.py(408): Changed (7/636) 236 265 268 292 293 297 299 to QC_PROBABLY_BAD because raw conductivity spikes 16:57:13 17 Apr 2017 UTC: INFO: QC.py(180): Changed (8/636) 3 4 236 265 286 292 293 297 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:57:13 17 Apr 2017 UTC: INFO: QC.py(180): Changed (2/636) 268 299 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 16:57:13 17 Apr 2017 UTC: INFO: QC.py(365): Changed (9/636) 3 4 236 265 286 292 293 297 635 to QC_INTERPOLATED because temperature spikes 16:57:13 17 Apr 2017 UTC: INFO: QC.py(377): Changed (1/636) 635 to QC_BAD because salinity below bound 16:57:13 17 Apr 2017 UTC: INFO: QC.py(408): Changed (7/636) 236 265 268 292 293 297 299 to QC_INTERPOLATED because conductivity spikes 16:57:13 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/636) 267:271 to QC_BAD because slow apogee CT flow 16:57:13 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/636) 1:6 to QC_BAD because prior to dive start 16:57:13 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/636) 636 to QC_BAD because end of climb 16:57:13 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/636) 1:6 267:271 635 636 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:57:13 17 Apr 2017 UTC: INFO: QC.py(180): Changed (13/636) 1:6 267:271 635 636 to QC_BAD because changed corrected salin implies changed speed 16:57:13 17 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:57:13 17 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 589 interp_salinity data_points in_between 420 426 % suspect thermal-inertia points 423 424 16:57:13 17 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 589 interp_salinity data_points in_between 430 436 % suspect thermal-inertia points 431:433 16:57:13 17 Apr 2017 UTC: INFO: QC.py(180): Changed (6/636) 236 265 286 292 293 297 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 16:57:13 17 Apr 2017 UTC: INFO: QC.py(180): Changed (1/636) 299 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 16:57:13 17 Apr 2017 UTC: INFO: QC.py(180): Changed (6/636) 236 265 286 292 293 297 to QC_INTERPOLATED because changed corrected temp implies changed speed 16:57:13 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.85 cm/s 16:57:13 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.38 cm/s 16:57:13 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:57:13 17 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (194/636) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:57:13 17 Apr 2017 UTC: INFO: QC.py(180): Changed (5/636) 3 4 236 286 635 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:57:13 17 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (194/636) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:57:13 17 Apr 2017 UTC: INFO: QC.py(180): Changed (5/636) 3 4 236 286 635 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:57:13 17 Apr 2017 UTC: INFO: QC.py(180): Changed (13/636) 1:6 267:271 635 636 to QC_BAD because changed salinity implies changed optode oxygen 16:57:13 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:57:13 17 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:57:13 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:57:14 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 589: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.04% reduction 16:57:14 17 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.589 16:57:14 17 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:57:14 17 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:57:14 17 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:57:14 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:57:14 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:02:19 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 17:02:20 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:02:20 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:03:30 17 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:03:30 17 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:03:30 17 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:03:30 17 Apr 2017 UTC /home/sg626/p6260589.log /home/sg626/p6260589.eng /home/sg626/p6260589.asc /home/sg626/p6260589.pro /home/sg626/p6260589.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:03:30 17 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:03:30 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:03:30 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:03:30 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:03:30 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:03:30 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:03:30 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:03:30 17 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:03:30 17 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:03:30 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:03:30 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:03:30 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:03:30 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:03:30 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:03:30 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:03:30 17 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:03:30 17 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:03:30 17 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:03:30 17 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:03:30 17 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:03:30 17 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:03:30 17 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:03:30 17 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:03:30 17 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 17:03:30 17 Apr 2017 UTC 20:58:09 17 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 29651 20:58:10 17 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:01:21 17 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 30097 21:01:21 17 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:01:21 17 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:01:21 17 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:01:21 17 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:01:21 17 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170417110121 ] 21:01:21 17 Apr 2017 UTC: INFO: Base.py(1333): PID:30106 21:01:22 17 Apr 2017 UTC: INFO: Base.py(1375): Started processing 21:01:22 17 Apr 2017 UTC 21:01:22 17 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:01:23 17 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:01:23 17 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:01:23 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:01:23 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:590 calls_made:1 call_cycle:0 21:01:23 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:01:23 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:590 calls_made:1 call_cycle:0 21:01:23 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:01:23 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:590 calls_made:1 call_cycle:0 21:01:23 17 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:590 calls_made:1 call_cycle:0 2233.7740 -15800.5560 04/17/17 20:55:30 UTC) to sdrifter@soest.hawaii.edu 21:01:23 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:590 calls_made:1 call_cycle:0 21:01:23 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:01:23 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:590 calls_made:1 call_cycle:0 21:01:23 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:01:23 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:590 calls_made:1 call_cycle:0 21:01:23 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:01:23 17 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:590 calls_made:1 call_cycle:0 21:01:23 17 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:01:23 17 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:01:33 17 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:01:35 17 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:01:35 17 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:01:35 17 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:01:35 17 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:01:35 17 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:01:40 17 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0590lz 21:01:40 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0590lz.x00 21:01:40 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0590lz.x01 21:01:40 17 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0590lz.r in process_file_group 21:01:40 17 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260590.log 21:01:40 17 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:01:40 17 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0590dz 21:01:40 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0590dz.x00 21:01:40 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0590dz.x01 21:01:40 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0590dz.x02 21:01:40 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0590dz.x03 21:01:40 17 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0590dz.x04 21:01:40 17 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0590dz.r in process_file_group 21:01:40 17 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [590] 21:01:40 17 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [590] 21:01:41 17 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260590) for profiles 21:01:41 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:01:41 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/699) 699 to QC_BAD because CT out of water 21:01:41 17 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.004m) 21:01:41 17 Apr 2017 UTC: INFO: QC.py(365): Changed (4/699) 276 696:698 to QC_PROBABLY_BAD because raw temperature spikes 21:01:41 17 Apr 2017 UTC: INFO: QC.py(377): Changed (1/699) 697 to QC_BAD because raw salinity below bound 21:01:41 17 Apr 2017 UTC: INFO: QC.py(408): Changed (4/699) 244 257 320 697 to QC_PROBABLY_BAD because raw conductivity spikes 21:01:41 17 Apr 2017 UTC: INFO: QC.py(180): Changed (3/699) 276 696 698 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:01:41 17 Apr 2017 UTC: INFO: QC.py(180): Changed (3/699) 244 257 320 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 21:01:41 17 Apr 2017 UTC: INFO: QC.py(180): Changed (1/699) 699 to QC_BAD because changed raw cond implies changed raw salinity 21:01:41 17 Apr 2017 UTC: INFO: QC.py(365): Changed (4/699) 276 696:698 to QC_INTERPOLATED because temperature spikes 21:01:41 17 Apr 2017 UTC: INFO: QC.py(377): Changed (1/699) 697 to QC_BAD because salinity below bound 21:01:41 17 Apr 2017 UTC: INFO: QC.py(388): Changed (1/699) 697 to QC_BAD because bad salinity indicates conductivity issues 21:01:41 17 Apr 2017 UTC: INFO: QC.py(408): Changed (3/699) 244 257 320 to QC_INTERPOLATED because conductivity spikes 21:01:41 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/699) 274:278 to QC_BAD because slow apogee CT flow 21:01:41 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/699) 1:6 to QC_BAD because prior to dive start 21:01:41 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/699) 696 698 to QC_BAD because end of climb 21:01:41 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/699) 1:6 274:278 696:699 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:01:41 17 Apr 2017 UTC: INFO: QC.py(180): Changed (15/699) 1:6 274:278 696:699 to QC_BAD because changed corrected salin implies changed speed 21:01:42 17 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:01:42 17 Apr 2017 UTC: INFO: QC.py(180): Changed (3/699) 244 257 320 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 21:01:42 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.93 cm/s 21:01:42 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.34 cm/s 21:01:42 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:01:42 17 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (214/699) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:01:42 17 Apr 2017 UTC: INFO: QC.py(180): Changed (4/699) 276 696:698 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:01:42 17 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (214/699) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:01:42 17 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/699) 695 696 to QC_BAD because bad aa4330 oyxgen 21:01:42 17 Apr 2017 UTC: INFO: QC.py(180): Changed (3/699) 276 697 698 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:01:42 17 Apr 2017 UTC: INFO: QC.py(180): Changed (14/699) 1:6 274:278 697:699 to QC_BAD because changed salinity implies changed optode oxygen 21:01:42 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:01:42 17 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:01:42 17 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:01:42 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 590: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.15% reduction 21:01:42 17 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.590 21:01:42 17 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:01:42 17 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:01:42 17 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:01:43 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:01:43 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 21:06:49 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 21:06:51 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 21:06:51 17 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 21:08:02 17 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:08:02 17 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:08:02 17 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:08:02 17 Apr 2017 UTC /home/sg626/p6260590.log /home/sg626/p6260590.eng /home/sg626/p6260590.asc /home/sg626/p6260590.pro /home/sg626/p6260590.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 21:08:02 17 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:08:02 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:08:02 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:08:02 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:08:02 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:08:02 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:08:02 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:08:02 17 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:08:02 17 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:08:02 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:08:02 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:08:02 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:08:02 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:08:02 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:08:02 17 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:08:02 17 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:08:02 17 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:08:02 17 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:08:02 17 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:08:02 17 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:08:02 17 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:08:02 17 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:08:02 17 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:08:02 17 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 21:08:02 17 Apr 2017 UTC 01:05:20 18 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 5923 01:05:21 18 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:08:45 18 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 6049 01:08:45 18 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:08:45 18 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:08:45 18 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:08:45 18 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:08:45 18 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170417150844 ] 01:08:45 18 Apr 2017 UTC: INFO: Base.py(1333): PID:6058 01:08:45 18 Apr 2017 UTC: INFO: Base.py(1375): Started processing 01:08:45 18 Apr 2017 UTC 01:08:45 18 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:08:46 18 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:08:46 18 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:08:46 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:08:46 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:591 calls_made:2 call_cycle:0 01:08:46 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:08:46 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:591 calls_made:2 call_cycle:0 01:08:46 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:08:46 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:591 calls_made:2 call_cycle:0 01:08:46 18 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:591 calls_made:2 call_cycle:0 2233.6910 -15800.1760 04/18/17 01:00:30 UTC) to sdrifter@soest.hawaii.edu 01:08:47 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:591 calls_made:2 call_cycle:0 01:08:47 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:08:47 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:591 calls_made:2 call_cycle:0 01:08:47 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:08:47 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:591 calls_made:2 call_cycle:0 01:08:47 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:08:47 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:591 calls_made:2 call_cycle:0 01:08:47 18 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:08:47 18 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:08:56 18 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:08:58 18 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:08:58 18 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:08:58 18 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:08:58 18 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:08:58 18 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:09:03 18 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0591lz 01:09:03 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0591lz.x00 01:09:03 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0591lz.x01 01:09:03 18 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0591lz.r in process_file_group 01:09:03 18 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260591.log 01:09:03 18 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 01:09:03 18 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0591dz 01:09:03 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0591dz.x00 01:09:03 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0591dz.x01 01:09:03 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0591dz.x02 01:09:03 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0591dz.x03 01:09:03 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0591dz.x04 01:09:03 18 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0591dz.r in process_file_group 01:09:04 18 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [591] 01:09:04 18 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [591] 01:09:04 18 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260591) for profiles 01:09:04 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 01:09:04 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/712) 712 to QC_BAD because CT out of water 01:09:04 18 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.064m) 01:09:04 18 Apr 2017 UTC: INFO: QC.py(365): Changed (3/712) 2 3 453 to QC_PROBABLY_BAD because raw temperature spikes 01:09:04 18 Apr 2017 UTC: INFO: QC.py(408): Changed (2/712) 453 488 to QC_PROBABLY_BAD because raw conductivity spikes 01:09:04 18 Apr 2017 UTC: INFO: QC.py(180): Changed (3/712) 2 3 453 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:09:04 18 Apr 2017 UTC: INFO: QC.py(180): Changed (1/712) 488 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 01:09:04 18 Apr 2017 UTC: INFO: QC.py(180): Changed (1/712) 712 to QC_BAD because changed raw cond implies changed raw salinity 01:09:04 18 Apr 2017 UTC: INFO: QC.py(365): Changed (3/712) 2 3 453 to QC_INTERPOLATED because temperature spikes 01:09:04 18 Apr 2017 UTC: INFO: QC.py(408): Changed (2/712) 453 488 to QC_INTERPOLATED because conductivity spikes 01:09:04 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/712) 269:273 to QC_BAD because slow apogee CT flow 01:09:04 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/712) 1:6 to QC_BAD because prior to dive start 01:09:04 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/712) 711 to QC_BAD because end of climb 01:09:04 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/712) 1:6 269:273 711 712 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:09:04 18 Apr 2017 UTC: INFO: QC.py(180): Changed (13/712) 1:6 269:273 711 712 to QC_BAD because changed corrected salin implies changed speed 01:09:05 18 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:09:05 18 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 591 interp_salinity data_points in_between 415 422 % suspect thermal-inertia points 416 01:09:05 18 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 591 interp_salinity data_points in_between 428 444 % suspect thermal-inertia points 439:443 01:09:05 18 Apr 2017 UTC: INFO: QC.py(180): Changed (1/712) 453 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 01:09:05 18 Apr 2017 UTC: INFO: QC.py(180): Changed (1/712) 488 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 01:09:05 18 Apr 2017 UTC: INFO: QC.py(180): Changed (1/712) 453 to QC_INTERPOLATED because changed corrected temp implies changed speed 01:09:05 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.04 cm/s 01:09:05 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.66 cm/s 01:09:05 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:09:05 18 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (215/712) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:09:05 18 Apr 2017 UTC: INFO: QC.py(180): Changed (3/712) 2 3 453 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 01:09:05 18 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (215/712) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 01:09:05 18 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/712) 587 709 to QC_BAD because bad aa4330 oyxgen 01:09:05 18 Apr 2017 UTC: INFO: QC.py(180): Changed (3/712) 2 3 453 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 01:09:05 18 Apr 2017 UTC: INFO: QC.py(180): Changed (13/712) 1:6 269:273 711 712 to QC_BAD because changed salinity implies changed optode oxygen 01:09:05 18 Apr 2017 UTC: INFO: QC.py(180): Changed (1/712) 488 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 01:09:05 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:09:05 18 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:09:05 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 01:09:06 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 591: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.83% reduction 01:09:06 18 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.591 01:09:06 18 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:09:06 18 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:09:06 18 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:09:06 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 01:09:06 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 01:14:14 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 01:14:16 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 01:14:16 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 01:15:27 18 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:15:27 18 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:15:27 18 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:15:27 18 Apr 2017 UTC /home/sg626/p6260591.log /home/sg626/p6260591.eng /home/sg626/p6260591.asc /home/sg626/p6260591.pro /home/sg626/p6260591.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 01:15:27 18 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:15:27 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:15:27 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:15:27 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:15:27 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:15:27 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:15:27 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:15:27 18 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:15:27 18 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:15:27 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:15:27 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:15:27 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:15:27 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:15:27 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:15:27 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:15:27 18 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:15:27 18 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:15:27 18 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:15:27 18 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:15:27 18 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:15:27 18 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:15:27 18 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:15:27 18 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:15:27 18 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 01:15:27 18 Apr 2017 UTC 04:55:49 18 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 12900 04:55:49 18 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:59:04 18 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 13031 04:59:04 18 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:59:04 18 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:59:04 18 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:59:04 18 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:59:04 18 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170417185904 ] 04:59:04 18 Apr 2017 UTC: INFO: Base.py(1333): PID:13039 04:59:04 18 Apr 2017 UTC: INFO: Base.py(1375): Started processing 04:59:04 18 Apr 2017 UTC 04:59:04 18 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:59:06 18 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:59:06 18 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:59:06 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:59:06 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:592 calls_made:1 call_cycle:0 04:59:06 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:59:06 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:592 calls_made:1 call_cycle:0 04:59:06 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:59:06 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:592 calls_made:1 call_cycle:0 04:59:06 18 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:592 calls_made:1 call_cycle:0 2234.3160 -15759.9470 04/18/17 04:53:25 UTC) to sdrifter@soest.hawaii.edu 04:59:06 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:592 calls_made:1 call_cycle:0 04:59:06 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:59:06 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:592 calls_made:1 call_cycle:0 04:59:06 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:59:06 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:592 calls_made:1 call_cycle:0 04:59:06 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:59:06 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:592 calls_made:1 call_cycle:0 04:59:06 18 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:59:06 18 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:59:16 18 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:59:17 18 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:59:17 18 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:59:17 18 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:59:17 18 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:59:17 18 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:59:23 18 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0592lz 04:59:23 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0592lz.x00 04:59:23 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0592lz.x01 04:59:23 18 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0592lz.r in process_file_group 04:59:23 18 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260592.log 04:59:23 18 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:59:23 18 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0592dz 04:59:23 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0592dz.x00 04:59:23 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0592dz.x01 04:59:23 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0592dz.x02 04:59:23 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0592dz.x03 04:59:23 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0592dz.x04 04:59:23 18 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0592dz.r in process_file_group 04:59:23 18 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [592] 04:59:23 18 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [592] 04:59:23 18 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260592) for profiles 04:59:23 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 04:59:23 18 Apr 2017 UTC: INFO: QC.py(365): Changed (3/663) 101 120 312 to QC_PROBABLY_BAD because raw temperature spikes 04:59:23 18 Apr 2017 UTC: INFO: QC.py(408): Changed (2/663) 312 662 to QC_PROBABLY_BAD because raw conductivity spikes 04:59:23 18 Apr 2017 UTC: INFO: QC.py(180): Changed (3/663) 101 120 312 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:59:23 18 Apr 2017 UTC: INFO: QC.py(180): Changed (1/663) 662 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 04:59:23 18 Apr 2017 UTC: INFO: QC.py(365): Changed (3/663) 101 120 312 to QC_INTERPOLATED because temperature spikes 04:59:24 18 Apr 2017 UTC: INFO: QC.py(408): Changed (2/663) 312 662 to QC_INTERPOLATED because conductivity spikes 04:59:24 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/663) 259:263 to QC_BAD because slow apogee CT flow 04:59:24 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/663) 1:6 to QC_BAD because prior to dive start 04:59:24 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (3/663) 661:663 to QC_BAD because end of climb 04:59:24 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/663) 1:6 259:263 661:663 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:59:24 18 Apr 2017 UTC: INFO: QC.py(180): Changed (14/663) 1:6 259:263 661:663 to QC_BAD because changed corrected salin implies changed speed 04:59:24 18 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:59:24 18 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 592 interp_salinity data_points in_between 122 136 % suspect thermal-inertia points 126 127 04:59:24 18 Apr 2017 UTC: INFO: QC.py(180): Changed (3/663) 101 120 312 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 04:59:24 18 Apr 2017 UTC: INFO: QC.py(180): Changed (3/663) 101 120 312 to QC_INTERPOLATED because changed corrected temp implies changed speed 04:59:24 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.60 cm/s 04:59:24 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.54 cm/s 04:59:24 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:59:24 18 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (201/663) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:59:24 18 Apr 2017 UTC: INFO: QC.py(180): Changed (2/663) 101 120 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:59:24 18 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (201/663) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 04:59:24 18 Apr 2017 UTC: INFO: QC.py(180): Changed (2/663) 101 120 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:59:24 18 Apr 2017 UTC: INFO: QC.py(180): Changed (14/663) 1:6 259:263 661:663 to QC_BAD because changed salinity implies changed optode oxygen 04:59:24 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:59:24 18 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:59:24 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 04:59:25 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 592: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.11% reduction 04:59:25 18 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.592 04:59:25 18 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:59:25 18 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:59:25 18 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:59:25 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 04:59:25 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 05:04:31 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 05:04:33 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 05:04:33 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 05:05:44 18 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:05:44 18 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:05:44 18 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:05:44 18 Apr 2017 UTC /home/sg626/p6260592.log /home/sg626/p6260592.eng /home/sg626/p6260592.asc /home/sg626/p6260592.pro /home/sg626/p6260592.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 05:05:44 18 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:05:44 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:05:44 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:05:44 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:05:44 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:05:44 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:05:44 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:05:44 18 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:05:44 18 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:05:44 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:05:44 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:05:44 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:05:44 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:05:44 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:05:44 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:05:44 18 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:05:44 18 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:05:44 18 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:05:44 18 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:05:44 18 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:05:44 18 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:05:44 18 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:05:44 18 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:05:44 18 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 05:05:44 18 Apr 2017 UTC 08:45:59 18 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 22385 08:45:59 18 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:49:08 18 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 22596 08:49:08 18 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:49:08 18 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:49:08 18 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:49:08 18 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:49:08 18 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170417224908 ] 08:49:08 18 Apr 2017 UTC: INFO: Base.py(1333): PID:22605 08:49:08 18 Apr 2017 UTC: INFO: Base.py(1375): Started processing 08:49:08 18 Apr 2017 UTC 08:49:08 18 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:49:10 18 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:49:10 18 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:49:10 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:49:10 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:593 calls_made:1 call_cycle:0 08:49:10 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:49:10 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:593 calls_made:1 call_cycle:0 08:49:10 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:49:10 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:593 calls_made:1 call_cycle:0 08:49:10 18 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:593 calls_made:1 call_cycle:0 2232.3180 -15800.6760 04/18/17 08:43:31 UTC) to sdrifter@soest.hawaii.edu 08:49:10 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:593 calls_made:1 call_cycle:0 08:49:10 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:49:10 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:593 calls_made:1 call_cycle:0 08:49:10 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:49:10 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:593 calls_made:1 call_cycle:0 08:49:10 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:49:10 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:593 calls_made:1 call_cycle:0 08:49:10 18 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:49:10 18 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:49:20 18 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:49:21 18 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:49:21 18 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:49:21 18 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:49:21 18 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:49:21 18 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:49:27 18 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0593lz 08:49:27 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0593lz.x00 08:49:27 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0593lz.x01 08:49:27 18 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0593lz.r in process_file_group 08:49:27 18 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260593.log 08:49:27 18 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:49:27 18 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0593dz 08:49:27 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0593dz.x00 08:49:27 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0593dz.x01 08:49:27 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0593dz.x02 08:49:27 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0593dz.x03 08:49:27 18 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0593dz.r in process_file_group 08:49:27 18 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [593] 08:49:27 18 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [593] 08:49:27 18 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260593) for profiles 08:49:27 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:49:27 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/643) 643 to QC_BAD because CT out of water 08:49:27 18 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.023m) 08:49:28 18 Apr 2017 UTC: INFO: QC.py(365): Changed (7/643) 2:5 121 408 574 to QC_PROBABLY_BAD because raw temperature spikes 08:49:28 18 Apr 2017 UTC: INFO: QC.py(377): Changed (1/643) 643 to QC_BAD because raw salinity below bound 08:49:28 18 Apr 2017 UTC: INFO: QC.py(408): Changed (2/643) 121 408 to QC_PROBABLY_BAD because raw conductivity spikes 08:49:28 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/643) 642 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 08:49:28 18 Apr 2017 UTC: INFO: QC.py(180): Changed (7/643) 2:5 121 408 574 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:49:28 18 Apr 2017 UTC: INFO: QC.py(180): Changed (1/643) 642 to QC_BAD because changed raw cond implies changed raw salinity 08:49:28 18 Apr 2017 UTC: INFO: QC.py(365): Changed (7/643) 2:5 121 408 574 to QC_INTERPOLATED because temperature spikes 08:49:28 18 Apr 2017 UTC: INFO: QC.py(377): Changed (1/643) 643 to QC_BAD because salinity below bound 08:49:28 18 Apr 2017 UTC: INFO: QC.py(408): Changed (2/643) 121 408 to QC_INTERPOLATED because conductivity spikes 08:49:28 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/643) 642 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 08:49:28 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/643) 249:253 to QC_BAD because slow apogee CT flow 08:49:28 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/643) 1:6 to QC_BAD because prior to dive start 08:49:28 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/643) 1:6 249:253 642 643 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:49:28 18 Apr 2017 UTC: INFO: QC.py(180): Changed (13/643) 1:6 249:253 642 643 to QC_BAD because changed corrected salin implies changed speed 08:49:28 18 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:49:28 18 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 593 interp_salinity data_points in_between 350 401 % suspect thermal-inertia points 384 385 08:49:28 18 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 593 interp_salinity data_points in_between 566 640 % suspect thermal-inertia points 571 08:49:28 18 Apr 2017 UTC: INFO: QC.py(180): Changed (3/643) 121 408 574 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 08:49:28 18 Apr 2017 UTC: INFO: QC.py(180): Changed (3/643) 121 408 574 to QC_INTERPOLATED because changed corrected temp implies changed speed 08:49:28 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.53 cm/s 08:49:28 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.64 cm/s 08:49:28 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:49:28 18 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (202/643) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:49:28 18 Apr 2017 UTC: INFO: QC.py(180): Changed (7/643) 2:5 121 408 574 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:49:28 18 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (202/643) 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:49:28 18 Apr 2017 UTC: INFO: QC.py(180): Changed (7/643) 2:5 121 408 574 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:49:28 18 Apr 2017 UTC: INFO: QC.py(180): Changed (13/643) 1:6 249:253 642 643 to QC_BAD because changed salinity implies changed optode oxygen 08:49:28 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:49:28 18 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:49:28 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 08:49:29 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 593: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.02% reduction 08:49:29 18 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.593 08:49:29 18 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:49:29 18 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:49:29 18 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:49:29 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 08:49:29 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 08:54:35 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 08:54:36 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 08:54:36 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 08:55:47 18 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:55:47 18 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:55:47 18 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:55:47 18 Apr 2017 UTC /home/sg626/p6260593.log /home/sg626/p6260593.eng /home/sg626/p6260593.asc /home/sg626/p6260593.pro /home/sg626/p6260593.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 08:55:47 18 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:55:47 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:55:47 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:55:47 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:55:47 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:55:47 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:55:47 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:55:47 18 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:55:47 18 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:55:47 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:55:47 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:55:47 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:55:47 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:55:47 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:55:47 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:55:47 18 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:55:47 18 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:55:47 18 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:55:47 18 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:55:47 18 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:55:47 18 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:55:47 18 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:55:47 18 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:55:47 18 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 08:55:47 18 Apr 2017 UTC 12:28:25 18 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 355 12:28:25 18 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:31:55 18 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 589 12:31:55 18 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:31:55 18 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:31:55 18 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:31:55 18 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:31:55 18 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170418023154 ] 12:31:55 18 Apr 2017 UTC: INFO: Base.py(1333): PID:598 12:31:55 18 Apr 2017 UTC: INFO: Base.py(1375): Started processing 12:31:55 18 Apr 2017 UTC 12:31:55 18 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:31:57 18 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:31:57 18 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:31:57 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:31:57 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:594 calls_made:1 call_cycle:0 12:31:57 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:31:57 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:594 calls_made:1 call_cycle:0 12:31:57 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:31:57 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:594 calls_made:1 call_cycle:0 12:31:57 18 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:594 calls_made:1 call_cycle:0 2232.8050 -15801.0150 04/18/17 12:25:49 UTC) to sdrifter@soest.hawaii.edu 12:31:57 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:594 calls_made:1 call_cycle:0 12:31:57 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:31:57 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:594 calls_made:1 call_cycle:0 12:31:57 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:31:57 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:594 calls_made:1 call_cycle:0 12:31:57 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:31:57 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:594 calls_made:1 call_cycle:0 12:31:57 18 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:31:57 18 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:32:06 18 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:32:08 18 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:32:08 18 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:32:08 18 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:32:08 18 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:32:08 18 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:32:14 18 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0594lz 12:32:14 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0594lz.x00 12:32:14 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0594lz.x01 12:32:14 18 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0594lz.r in process_file_group 12:32:14 18 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260594.log 12:32:14 18 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:32:14 18 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0594dz 12:32:14 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0594dz.x00 12:32:14 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0594dz.x01 12:32:14 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0594dz.x02 12:32:14 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0594dz.x03 12:32:14 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0594dz.x04 12:32:14 18 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0594dz.r in process_file_group 12:32:14 18 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [594] 12:32:14 18 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [594] 12:32:14 18 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260594) for profiles 12:32:14 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 12:32:14 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/672) 672 to QC_BAD because CT out of water 12:32:14 18 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.122m) 12:32:14 18 Apr 2017 UTC: INFO: QC.py(365): Changed (3/672) 4 5 114 to QC_PROBABLY_BAD because raw temperature spikes 12:32:14 18 Apr 2017 UTC: INFO: QC.py(377): Changed (1/672) 672 to QC_BAD because raw salinity below bound 12:32:14 18 Apr 2017 UTC: INFO: QC.py(408): Changed (1/672) 114 to QC_PROBABLY_BAD because raw conductivity spikes 12:32:14 18 Apr 2017 UTC: INFO: QC.py(180): Changed (3/672) 4 5 114 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 12:32:14 18 Apr 2017 UTC: INFO: QC.py(365): Changed (3/672) 4 5 114 to QC_INTERPOLATED because temperature spikes 12:32:14 18 Apr 2017 UTC: INFO: QC.py(377): Changed (1/672) 672 to QC_BAD because salinity below bound 12:32:14 18 Apr 2017 UTC: INFO: QC.py(408): Changed (1/672) 114 to QC_INTERPOLATED because conductivity spikes 12:32:14 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/672) 264:268 to QC_BAD because slow apogee CT flow 12:32:14 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/672) 1:6 to QC_BAD because prior to dive start 12:32:14 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/672) 671 to QC_BAD because end of climb 12:32:15 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/672) 1:6 264:268 671 672 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:32:15 18 Apr 2017 UTC: INFO: QC.py(180): Changed (13/672) 1:6 264:268 671 672 to QC_BAD because changed corrected salin implies changed speed 12:32:15 18 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:32:15 18 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 594 interp_salinity data_points in_between 387 404 % suspect thermal-inertia points 391:397 12:32:15 18 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 594 interp_salinity data_points in_between 602 607 % suspect thermal-inertia points 603 12:32:15 18 Apr 2017 UTC: INFO: QC.py(180): Changed (1/672) 114 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 12:32:15 18 Apr 2017 UTC: INFO: QC.py(180): Changed (1/672) 114 to QC_INTERPOLATED because changed corrected temp implies changed speed 12:32:15 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.23 cm/s 12:32:15 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.49 cm/s 12:32:15 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:32:15 18 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (188/672) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:32:15 18 Apr 2017 UTC: INFO: QC.py(180): Changed (3/672) 4 5 114 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 12:32:15 18 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (188/672) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 12:32:15 18 Apr 2017 UTC: INFO: QC.py(180): Changed (3/672) 4 5 114 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 12:32:15 18 Apr 2017 UTC: INFO: QC.py(180): Changed (13/672) 1:6 264:268 671 672 to QC_BAD because changed salinity implies changed optode oxygen 12:32:15 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:32:15 18 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:32:15 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 12:32:16 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 594: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.93% reduction 12:32:16 18 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.594 12:32:16 18 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:32:16 18 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:32:16 18 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:32:16 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 12:32:16 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 12:37:25 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 12:37:27 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 12:37:27 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 12:38:40 18 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:38:40 18 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:38:40 18 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 12:38:40 18 Apr 2017 UTC /home/sg626/p6260594.log /home/sg626/p6260594.eng /home/sg626/p6260594.asc /home/sg626/p6260594.pro /home/sg626/p6260594.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 12:38:40 18 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:38:40 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:38:40 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:38:40 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:38:40 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:38:40 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:38:40 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:38:40 18 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:38:40 18 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:38:40 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:38:40 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:38:40 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:38:40 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:38:40 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:38:40 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:38:40 18 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:38:40 18 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 12:38:40 18 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 12:38:40 18 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 12:38:40 18 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 12:38:40 18 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:38:40 18 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:38:40 18 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:38:40 18 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 12:38:40 18 Apr 2017 UTC 16:18:07 18 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 7638 16:18:07 18 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:21:16 18 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 7913 16:21:16 18 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:21:16 18 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:21:16 18 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:21:16 18 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:21:16 18 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170418062115 ] 16:21:16 18 Apr 2017 UTC: INFO: Base.py(1333): PID:7920 16:21:16 18 Apr 2017 UTC: INFO: Base.py(1375): Started processing 16:21:16 18 Apr 2017 UTC 16:21:16 18 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:21:18 18 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:21:18 18 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:21:18 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:21:18 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:595 calls_made:1 call_cycle:0 16:21:18 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:21:18 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:595 calls_made:1 call_cycle:0 16:21:18 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:21:18 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:595 calls_made:1 call_cycle:0 16:21:18 18 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:595 calls_made:1 call_cycle:0 2232.9690 -15800.9760 04/18/17 16:15:40 UTC) to sdrifter@soest.hawaii.edu 16:21:18 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:595 calls_made:1 call_cycle:0 16:21:18 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:21:18 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:595 calls_made:1 call_cycle:0 16:21:18 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:21:18 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:595 calls_made:1 call_cycle:0 16:21:18 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:21:18 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:595 calls_made:1 call_cycle:0 16:21:18 18 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:21:18 18 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:21:28 18 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:21:30 18 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:21:30 18 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:21:30 18 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:21:30 18 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:21:30 18 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:21:35 18 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0595lz 16:21:35 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0595lz.x00 16:21:35 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0595lz.x01 16:21:35 18 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0595lz.r in process_file_group 16:21:35 18 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260595.log 16:21:35 18 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:21:35 18 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0595dz 16:21:35 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0595dz.x00 16:21:35 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0595dz.x01 16:21:35 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0595dz.x02 16:21:35 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0595dz.x03 16:21:35 18 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0595dz.r in process_file_group 16:21:35 18 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [595] 16:21:35 18 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [595] 16:21:36 18 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260595) for profiles 16:21:36 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:21:36 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/646) 645 to QC_BAD because CT out of water 16:21:36 18 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.010m) 16:21:36 18 Apr 2017 UTC: INFO: QC.py(408): Changed (1/646) 70 to QC_PROBABLY_BAD because raw conductivity spikes 16:21:36 18 Apr 2017 UTC: INFO: QC.py(180): Changed (1/646) 70 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 16:21:36 18 Apr 2017 UTC: INFO: QC.py(180): Changed (1/646) 645 to QC_BAD because changed raw cond implies changed raw salinity 16:21:36 18 Apr 2017 UTC: INFO: QC.py(408): Changed (1/646) 70 to QC_INTERPOLATED because conductivity spikes 16:21:36 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/646) 256:260 to QC_BAD because slow apogee CT flow 16:21:36 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/646) 1:6 to QC_BAD because prior to dive start 16:21:36 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/646) 644 646 to QC_BAD because end of climb 16:21:36 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/646) 1:6 256:260 644:646 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:21:36 18 Apr 2017 UTC: INFO: QC.py(180): Changed (14/646) 1:6 256:260 644:646 to QC_BAD because changed corrected salin implies changed speed 16:21:37 18 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:21:37 18 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 595 interp_salinity data_points in_between 399 411 % suspect thermal-inertia points 402 406:408 16:21:37 18 Apr 2017 UTC: INFO: QC.py(180): Changed (1/646) 70 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 16:21:37 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.13 cm/s 16:21:37 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.73 cm/s 16:21:37 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:21:37 18 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (203/646) 134 135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:21:37 18 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (203/646) 134 135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:21:37 18 Apr 2017 UTC: INFO: QC.py(180): Changed (14/646) 1:6 256:260 644:646 to QC_BAD because changed salinity implies changed optode oxygen 16:21:37 18 Apr 2017 UTC: INFO: QC.py(180): Changed (1/646) 70 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 16:21:37 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:21:37 18 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:21:37 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:21:37 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 595: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.17% reduction 16:21:37 18 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.595 16:21:38 18 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:21:38 18 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:21:38 18 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:21:38 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:21:38 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:26:43 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 16:26:45 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:26:45 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:27:58 18 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:27:58 18 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:27:58 18 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:27:58 18 Apr 2017 UTC /home/sg626/p6260595.log /home/sg626/p6260595.eng /home/sg626/p6260595.asc /home/sg626/p6260595.pro /home/sg626/p6260595.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:27:58 18 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:27:58 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:27:58 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:27:58 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:27:58 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:27:58 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:27:58 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:27:58 18 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:27:58 18 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:27:58 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:27:58 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:27:58 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:27:58 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:27:58 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:27:58 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:27:58 18 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:27:58 18 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:27:58 18 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:27:58 18 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:27:58 18 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:27:58 18 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:27:58 18 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:27:58 18 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:27:58 18 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 16:27:58 18 Apr 2017 UTC 20:20:48 18 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 15848 20:20:48 18 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:22:11 18 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 15933 20:22:11 18 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:22:11 18 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:22:11 18 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:22:11 18 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:22:11 18 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170418102211 ] 20:22:11 18 Apr 2017 UTC: INFO: Base.py(1333): PID:15940 20:22:11 18 Apr 2017 UTC: INFO: Base.py(1375): Started processing 20:22:11 18 Apr 2017 UTC 20:22:11 18 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:22:13 18 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:22:13 18 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:22:13 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:22:13 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:596 calls_made:1 call_cycle:0 20:22:13 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:22:13 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:596 calls_made:1 call_cycle:0 20:22:13 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:22:13 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:596 calls_made:1 call_cycle:0 20:22:13 18 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:596 calls_made:1 call_cycle:0 2233.4450 -15801.0320 04/18/17 20:18:18 UTC) to sdrifter@soest.hawaii.edu 20:22:13 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:596 calls_made:1 call_cycle:0 20:22:13 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:22:13 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:596 calls_made:1 call_cycle:0 20:22:13 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:22:13 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:596 calls_made:1 call_cycle:0 20:22:13 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:22:13 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:596 calls_made:1 call_cycle:0 20:22:13 18 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:22:13 18 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:22:23 18 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:22:24 18 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:22:24 18 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:22:24 18 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:22:24 18 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:22:24 18 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:22:30 18 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0596lz 20:22:30 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0596lz.1a.x00 20:22:30 18 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0596lz.r in process_file_group 20:22:30 18 Apr 2017 UTC: ERROR: BaseGZip.py(125): ./sg0596lz.r not a gzipped file 20:22:30 18 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0596lz.r - skipping 20:22:30 18 Apr 2017 UTC: ERROR: Base.py(243): Could not process sg0596lz - skipping 20:22:30 18 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:22:30 18 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0596lz 20:22:30 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0596lz.1a.x00 20:22:30 18 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0596lz.r in process_file_group 20:22:30 18 Apr 2017 UTC: ERROR: BaseGZip.py(125): ./sg0596lz.r not a gzipped file 20:22:30 18 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0596lz.r - skipping 20:22:30 18 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0596lz - skipping 20:22:30 18 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 20:22:30 18 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 20:22:30 18 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 20:22:30 18 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.596 20:22:30 18 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:22:30 18 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:22:30 18 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:22:30 18 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:22:30 18 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:22:30 18 Apr 2017 UTC: ERROR: Base.py(1960): Dive [596] failed to process completely. The following files were not processed completely: /home/sg626/sg0596lz.r Glider logout not seen - retransmissions from glider possible Consult baselog_170418102211 for details. 20:22:30 18 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:22:30 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:22:30 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:22:30 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:22:30 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:22:30 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:22:30 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:22:30 18 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:22:30 18 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:22:30 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:22:30 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:22:30 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:22:30 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:22:30 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:22:30 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:22:30 18 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:22:30 18 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:22:30 18 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:22:30 18 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:22:30 18 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:22:30 18 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:22:30 18 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:22:30 18 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:22:30 18 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 20:22:30 18 Apr 2017 UTC 20:24:39 18 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 16211 20:24:39 18 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:28:01 18 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 16354 20:28:01 18 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:28:01 18 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:28:01 18 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:28:01 18 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:28:01 18 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170418102800 ] 20:28:01 18 Apr 2017 UTC: INFO: Base.py(1333): PID:16361 20:28:01 18 Apr 2017 UTC: INFO: Base.py(1375): Started processing 20:28:01 18 Apr 2017 UTC 20:28:01 18 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:28:02 18 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:28:02 18 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:28:02 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:28:02 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:596 calls_made:2 call_cycle:0 20:28:02 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:28:02 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:596 calls_made:2 call_cycle:0 20:28:02 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:28:02 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:596 calls_made:2 call_cycle:0 20:28:02 18 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:596 calls_made:2 call_cycle:0 2233.4450 -15801.0320 04/18/17 20:18:18 UTC) to sdrifter@soest.hawaii.edu 20:28:02 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:596 calls_made:2 call_cycle:0 20:28:02 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:28:02 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:596 calls_made:2 call_cycle:0 20:28:02 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:28:02 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:596 calls_made:2 call_cycle:0 20:28:02 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:28:02 18 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:596 calls_made:2 call_cycle:0 20:28:02 18 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:28:02 18 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:28:12 18 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:28:14 18 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:28:14 18 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:28:14 18 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:28:14 18 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:28:14 18 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:28:19 18 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0596lz 20:28:19 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0596lz.x00 20:28:19 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0596lz.x01 20:28:19 18 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0596lz.r in process_file_group 20:28:19 18 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260596.log 20:28:19 18 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:28:19 18 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0596dz 20:28:19 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0596dz.x00 20:28:19 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0596dz.x01 20:28:19 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0596dz.x02 20:28:19 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0596dz.x03 20:28:19 18 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0596dz.x04 20:28:19 18 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0596dz.r in process_file_group 20:28:20 18 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [596] 20:28:20 18 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [596] 20:28:20 18 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260596) for profiles 20:28:20 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 20:28:20 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/683) 681 to QC_BAD because CT out of water 20:28:20 18 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.041m) 20:28:20 18 Apr 2017 UTC: INFO: QC.py(365): Changed (5/683) 2 3 267 681 682 to QC_PROBABLY_BAD because raw temperature spikes 20:28:20 18 Apr 2017 UTC: INFO: QC.py(180): Changed (5/683) 2 3 267 681 682 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 20:28:20 18 Apr 2017 UTC: INFO: QC.py(180): Changed (1/683) 681 to QC_BAD because changed raw cond implies changed raw salinity 20:28:20 18 Apr 2017 UTC: INFO: QC.py(365): Changed (5/683) 2 3 267 681 682 to QC_INTERPOLATED because temperature spikes 20:28:20 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/683) 265:269 to QC_BAD because slow apogee CT flow 20:28:20 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/683) 1:6 to QC_BAD because prior to dive start 20:28:20 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/683) 682 683 to QC_BAD because end of climb 20:28:20 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/683) 1:6 265:269 681:683 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 20:28:20 18 Apr 2017 UTC: INFO: QC.py(180): Changed (14/683) 1:6 265:269 681:683 to QC_BAD because changed corrected salin implies changed speed 20:28:21 18 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 20:28:21 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.60 cm/s 20:28:21 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.44 cm/s 20:28:21 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 20:28:21 18 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (215/683) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 20:28:21 18 Apr 2017 UTC: INFO: QC.py(180): Changed (4/683) 2 3 681 682 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 20:28:21 18 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (215/683) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 20:28:21 18 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (4/683) 680:683 to QC_BAD because bad aa4330 oyxgen 20:28:21 18 Apr 2017 UTC: INFO: QC.py(180): Changed (2/683) 2 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 20:28:21 18 Apr 2017 UTC: INFO: QC.py(180): Changed (11/683) 1:6 265:269 to QC_BAD because changed salinity implies changed optode oxygen 20:28:21 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 20:28:21 18 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 20:28:21 18 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 20:28:21 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 596: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.05% reduction 20:28:21 18 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.596 20:28:21 18 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:28:21 18 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:28:21 18 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:28:22 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 20:28:22 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 20:33:28 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 20:33:30 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 20:33:30 18 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 20:34:43 18 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:34:43 18 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:34:43 18 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:34:43 18 Apr 2017 UTC /home/sg626/p6260596.log /home/sg626/p6260596.eng /home/sg626/p6260596.asc /home/sg626/p6260596.pro /home/sg626/p6260596.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 20:34:43 18 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:34:43 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:34:43 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:34:43 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:34:43 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:34:43 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:34:43 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:34:43 18 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:34:43 18 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:34:43 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:34:43 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:34:43 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:34:43 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:34:43 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:34:43 18 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:34:43 18 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:34:43 18 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:34:43 18 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:34:43 18 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:34:43 18 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:34:43 18 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:34:43 18 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:34:43 18 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:34:43 18 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 20:34:43 18 Apr 2017 UTC 00:25:47 19 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 24020 00:25:47 19 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:29:17 19 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 24148 00:29:17 19 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:29:17 19 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:29:17 19 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:29:17 19 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:29:17 19 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170418142916 ] 00:29:17 19 Apr 2017 UTC: INFO: Base.py(1333): PID:24155 00:29:17 19 Apr 2017 UTC: INFO: Base.py(1375): Started processing 00:29:17 19 Apr 2017 UTC 00:29:17 19 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:29:18 19 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:29:18 19 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:29:18 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:29:18 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:597 calls_made:2 call_cycle:0 00:29:18 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:29:18 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:597 calls_made:2 call_cycle:0 00:29:18 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:29:18 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:597 calls_made:2 call_cycle:0 00:29:18 19 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:597 calls_made:2 call_cycle:0 2233.6030 -15800.5440 04/19/17 00:20:31 UTC) to sdrifter@soest.hawaii.edu 00:29:18 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:597 calls_made:2 call_cycle:0 00:29:18 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:29:18 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:597 calls_made:2 call_cycle:0 00:29:18 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:29:18 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:597 calls_made:2 call_cycle:0 00:29:18 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:29:18 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:597 calls_made:2 call_cycle:0 00:29:18 19 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:29:18 19 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:29:28 19 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:29:30 19 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:29:30 19 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:29:30 19 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:29:30 19 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:29:30 19 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:29:35 19 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0597lz 00:29:35 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0597lz.x00 00:29:35 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0597lz.x01 00:29:35 19 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0597lz.r in process_file_group 00:29:35 19 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260597.log 00:29:35 19 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:29:35 19 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0597dz 00:29:35 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0597dz.x00 00:29:35 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0597dz.x01 00:29:35 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0597dz.x02 00:29:35 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0597dz.x03 00:29:35 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0597dz.x04 00:29:35 19 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0597dz.r in process_file_group 00:29:36 19 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [597] 00:29:36 19 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [597] 00:29:36 19 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260597) for profiles 00:29:36 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 00:29:36 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/675) 673 675 to QC_BAD because CT out of water 00:29:36 19 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.072m) 00:29:36 19 Apr 2017 UTC: INFO: QC.py(365): Changed (8/675) 3 271 464 487 488 671 673 674 to QC_PROBABLY_BAD because raw temperature spikes 00:29:36 19 Apr 2017 UTC: INFO: QC.py(408): Changed (2/675) 3 487 to QC_PROBABLY_BAD because raw conductivity spikes 00:29:36 19 Apr 2017 UTC: INFO: QC.py(180): Changed (8/675) 3 271 464 487 488 671 673 674 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:29:36 19 Apr 2017 UTC: INFO: QC.py(180): Changed (2/675) 673 675 to QC_BAD because changed raw cond implies changed raw salinity 00:29:36 19 Apr 2017 UTC: INFO: QC.py(365): Changed (8/675) 3 271 464 487 488 671 673 674 to QC_INTERPOLATED because temperature spikes 00:29:36 19 Apr 2017 UTC: INFO: QC.py(408): Changed (2/675) 3 487 to QC_INTERPOLATED because conductivity spikes 00:29:36 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/675) 270:274 to QC_BAD because slow apogee CT flow 00:29:36 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/675) 1:6 to QC_BAD because prior to dive start 00:29:36 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/675) 674 to QC_BAD because end of climb 00:29:36 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/675) 1:6 270:274 673:675 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:29:36 19 Apr 2017 UTC: INFO: QC.py(180): Changed (14/675) 1:6 270:274 673:675 to QC_BAD because changed corrected salin implies changed speed 00:29:37 19 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:29:37 19 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 597 interp_salinity data_points in_between 412 425 % suspect thermal-inertia points 419 00:29:37 19 Apr 2017 UTC: INFO: QC.py(180): Changed (4/675) 464 487 488 671 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 00:29:37 19 Apr 2017 UTC: INFO: QC.py(180): Changed (4/675) 464 487 488 671 to QC_INTERPOLATED because changed corrected temp implies changed speed 00:29:37 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.55 cm/s 00:29:37 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.39 cm/s 00:29:37 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:29:37 19 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (208/675) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:29:37 19 Apr 2017 UTC: INFO: QC.py(180): Changed (8/675) 3 271 464 487 488 671 673 674 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:29:37 19 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (208/675) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 00:29:37 19 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (3/675) 671 672 674 to QC_BAD because bad aa4330 oyxgen 00:29:37 19 Apr 2017 UTC: INFO: QC.py(180): Changed (6/675) 3 271 464 487 488 673 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:29:37 19 Apr 2017 UTC: INFO: QC.py(180): Changed (13/675) 1:6 270:274 673 675 to QC_BAD because changed salinity implies changed optode oxygen 00:29:37 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:29:37 19 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:29:37 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 00:29:38 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 597: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.07% reduction 00:29:38 19 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.597 00:29:38 19 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:29:38 19 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:29:38 19 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:29:38 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 00:29:38 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 00:34:48 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 00:34:49 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 00:34:49 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 00:36:02 19 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:36:02 19 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:36:02 19 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:36:02 19 Apr 2017 UTC /home/sg626/p6260597.log /home/sg626/p6260597.eng /home/sg626/p6260597.asc /home/sg626/p6260597.pro /home/sg626/p6260597.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 00:36:02 19 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:36:02 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:36:02 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:36:02 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:36:02 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:36:02 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:36:02 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:36:02 19 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:36:02 19 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:36:02 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:36:02 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:36:02 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:36:02 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:36:02 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:36:02 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:36:02 19 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:36:02 19 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:36:02 19 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:36:02 19 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:36:02 19 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:36:02 19 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:36:02 19 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:36:02 19 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:36:02 19 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 00:36:02 19 Apr 2017 UTC 04:32:16 19 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 31784 04:32:16 19 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:35:35 19 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 31915 04:35:35 19 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:35:35 19 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:35:35 19 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:35:35 19 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:35:35 19 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170418183534 ] 04:35:35 19 Apr 2017 UTC: INFO: Base.py(1333): PID:31923 04:35:35 19 Apr 2017 UTC: INFO: Base.py(1375): Started processing 04:35:35 19 Apr 2017 UTC 04:35:35 19 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:35:37 19 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:35:37 19 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:35:37 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:35:37 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:598 calls_made:1 call_cycle:0 04:35:37 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:35:37 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:598 calls_made:1 call_cycle:0 04:35:37 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:35:37 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:598 calls_made:1 call_cycle:0 04:35:37 19 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:598 calls_made:1 call_cycle:0 2233.9580 -15800.1310 04/19/17 04:29:49 UTC) to sdrifter@soest.hawaii.edu 04:35:37 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:598 calls_made:1 call_cycle:0 04:35:37 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:35:37 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:598 calls_made:1 call_cycle:0 04:35:37 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:35:37 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:598 calls_made:1 call_cycle:0 04:35:37 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:35:37 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:598 calls_made:1 call_cycle:0 04:35:37 19 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:35:37 19 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:35:46 19 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:35:48 19 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:35:48 19 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:35:48 19 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:35:48 19 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:35:48 19 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:35:54 19 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0598lz 04:35:54 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0598lz.x00 04:35:54 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0598lz.x01 04:35:54 19 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0598lz.r in process_file_group 04:35:54 19 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260598.log 04:35:54 19 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:35:54 19 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0598dz 04:35:54 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0598dz.x00 04:35:54 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0598dz.x01 04:35:54 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0598dz.x02 04:35:54 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0598dz.x03 04:35:54 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0598dz.x04 04:35:54 19 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0598dz.r in process_file_group 04:35:54 19 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [598] 04:35:54 19 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [598] 04:35:54 19 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260598) for profiles 04:35:54 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 04:35:55 19 Apr 2017 UTC: INFO: QC.py(365): Changed (2/710) 274 474 to QC_PROBABLY_BAD because raw temperature spikes 04:35:55 19 Apr 2017 UTC: INFO: QC.py(377): Changed (1/710) 710 to QC_BAD because raw salinity below bound 04:35:55 19 Apr 2017 UTC: INFO: QC.py(388): Changed (1/710) 710 to QC_BAD because bad raw salinity indicates raw conductivity issues 04:35:55 19 Apr 2017 UTC: INFO: QC.py(408): Changed (1/710) 474 to QC_PROBABLY_BAD because raw conductivity spikes 04:35:55 19 Apr 2017 UTC: INFO: QC.py(180): Changed (2/710) 274 474 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:35:55 19 Apr 2017 UTC: INFO: QC.py(365): Changed (2/710) 274 474 to QC_INTERPOLATED because temperature spikes 04:35:55 19 Apr 2017 UTC: INFO: QC.py(377): Changed (1/710) 710 to QC_BAD because salinity below bound 04:35:55 19 Apr 2017 UTC: INFO: QC.py(388): Changed (1/710) 710 to QC_BAD because bad salinity indicates conductivity issues 04:35:55 19 Apr 2017 UTC: INFO: QC.py(408): Changed (1/710) 474 to QC_INTERPOLATED because conductivity spikes 04:35:55 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/710) 272:276 to QC_BAD because slow apogee CT flow 04:35:55 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/710) 1:6 to QC_BAD because prior to dive start 04:35:55 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/710) 709 to QC_BAD because end of climb 04:35:55 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/710) 1:6 272:276 709 710 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:35:55 19 Apr 2017 UTC: INFO: QC.py(180): Changed (13/710) 1:6 272:276 709 710 to QC_BAD because changed corrected salin implies changed speed 04:35:55 19 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:35:55 19 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 598 interp_salinity data_points in_between 121 132 % suspect thermal-inertia points 129 130 04:35:55 19 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 598 interp_salinity data_points in_between 445 452 % suspect thermal-inertia points 449 450 04:35:55 19 Apr 2017 UTC: INFO: QC.py(180): Changed (1/710) 474 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 04:35:55 19 Apr 2017 UTC: INFO: QC.py(180): Changed (1/710) 474 to QC_INTERPOLATED because changed corrected temp implies changed speed 04:35:55 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.27 cm/s 04:35:55 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.94 cm/s 04:35:55 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:35:55 19 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (216/710) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:35:55 19 Apr 2017 UTC: INFO: QC.py(180): Changed (1/710) 474 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:35:55 19 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (216/710) 143:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 04:35:55 19 Apr 2017 UTC: INFO: QC.py(180): Changed (1/710) 474 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:35:55 19 Apr 2017 UTC: INFO: QC.py(180): Changed (13/710) 1:6 272:276 709 710 to QC_BAD because changed salinity implies changed optode oxygen 04:35:55 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:35:55 19 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:35:56 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 04:35:56 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 598: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.83% reduction 04:35:56 19 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.598 04:35:56 19 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:35:56 19 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:35:56 19 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:35:57 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 04:35:57 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 04:41:03 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 04:41:05 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 04:41:05 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 04:42:18 19 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:42:18 19 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:42:18 19 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:42:18 19 Apr 2017 UTC /home/sg626/p6260598.log /home/sg626/p6260598.eng /home/sg626/p6260598.asc /home/sg626/p6260598.pro /home/sg626/p6260598.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 04:42:18 19 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:42:18 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:42:18 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:42:18 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:42:18 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:42:18 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:42:18 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:42:18 19 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:42:18 19 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:42:18 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:42:18 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:42:18 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:42:18 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:42:18 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:42:18 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:42:18 19 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:42:18 19 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:42:18 19 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:42:18 19 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:42:18 19 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:42:18 19 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:42:18 19 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:42:18 19 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:42:18 19 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 04:42:18 19 Apr 2017 UTC 08:17:58 19 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 6620 08:17:58 19 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:21:18 19 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 6865 08:21:18 19 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:21:18 19 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:21:18 19 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:21:18 19 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:21:18 19 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170418222117 ] 08:21:18 19 Apr 2017 UTC: INFO: Base.py(1333): PID:6872 08:21:18 19 Apr 2017 UTC: INFO: Base.py(1375): Started processing 08:21:18 19 Apr 2017 UTC 08:21:18 19 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:21:19 19 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:21:19 19 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:21:19 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:21:19 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:599 calls_made:1 call_cycle:0 08:21:19 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:21:19 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:599 calls_made:1 call_cycle:0 08:21:19 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:21:19 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:599 calls_made:1 call_cycle:0 08:21:19 19 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:599 calls_made:1 call_cycle:0 2233.5580 -15759.1800 04/19/17 08:15:30 UTC) to sdrifter@soest.hawaii.edu 08:21:19 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:599 calls_made:1 call_cycle:0 08:21:19 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:21:19 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:599 calls_made:1 call_cycle:0 08:21:19 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:21:19 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:599 calls_made:1 call_cycle:0 08:21:19 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:21:19 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:599 calls_made:1 call_cycle:0 08:21:19 19 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:21:19 19 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:21:29 19 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:21:31 19 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:21:31 19 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:21:31 19 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:21:31 19 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:21:31 19 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:21:36 19 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0599lz 08:21:36 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0599lz.x00 08:21:36 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0599lz.x01 08:21:36 19 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0599lz.r in process_file_group 08:21:36 19 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260599.log 08:21:36 19 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:21:36 19 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0599dz 08:21:36 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0599dz.x00 08:21:36 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0599dz.x01 08:21:36 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0599dz.x02 08:21:36 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0599dz.x03 08:21:36 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0599dz.x04 08:21:36 19 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0599dz.r in process_file_group 08:21:37 19 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [599] 08:21:37 19 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [599] 08:21:37 19 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260599) for profiles 08:21:37 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:21:37 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/670) 668:670 to QC_BAD because CT out of water 08:21:37 19 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.172m) 08:21:37 19 Apr 2017 UTC: INFO: QC.py(365): Changed (1/670) 2 to QC_PROBABLY_BAD because raw temperature spikes 08:21:37 19 Apr 2017 UTC: INFO: QC.py(377): Changed (2/670) 669 670 to QC_BAD because raw salinity below bound 08:21:37 19 Apr 2017 UTC: INFO: QC.py(180): Changed (1/670) 2 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:21:37 19 Apr 2017 UTC: INFO: QC.py(180): Changed (1/670) 668 to QC_BAD because changed raw cond implies changed raw salinity 08:21:37 19 Apr 2017 UTC: INFO: QC.py(365): Changed (1/670) 2 to QC_INTERPOLATED because temperature spikes 08:21:37 19 Apr 2017 UTC: INFO: QC.py(377): Changed (2/670) 669 670 to QC_BAD because salinity below bound 08:21:37 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/670) 252:256 to QC_BAD because slow apogee CT flow 08:21:37 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/670) 1:6 to QC_BAD because prior to dive start 08:21:37 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/670) 1:6 252:256 668:670 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:21:37 19 Apr 2017 UTC: INFO: QC.py(180): Changed (14/670) 1:6 252:256 668:670 to QC_BAD because changed corrected salin implies changed speed 08:21:38 19 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:21:38 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.27 cm/s 08:21:38 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.36 cm/s 08:21:38 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:21:38 19 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (192/670) 134 135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:21:38 19 Apr 2017 UTC: INFO: QC.py(180): Changed (1/670) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:21:38 19 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (192/670) 134 135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:21:38 19 Apr 2017 UTC: INFO: QC.py(180): Changed (1/670) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:21:38 19 Apr 2017 UTC: INFO: QC.py(180): Changed (14/670) 1:6 252:256 668:670 to QC_BAD because changed salinity implies changed optode oxygen 08:21:38 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:21:38 19 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:21:38 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 08:21:38 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 599: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.09% reduction 08:21:39 19 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.599 08:21:39 19 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:21:39 19 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:21:39 19 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:21:39 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 08:21:39 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 08:26:47 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 08:26:49 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 08:26:49 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 08:28:01 19 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:28:01 19 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:28:01 19 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:28:01 19 Apr 2017 UTC /home/sg626/p6260599.log /home/sg626/p6260599.eng /home/sg626/p6260599.asc /home/sg626/p6260599.pro /home/sg626/p6260599.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 08:28:01 19 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:28:01 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:28:01 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:28:01 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:28:01 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:28:01 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:28:01 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:28:01 19 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:28:01 19 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:28:01 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:28:01 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:28:01 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:28:01 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:28:01 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:28:01 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:28:01 19 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:28:01 19 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:28:01 19 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:28:01 19 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:28:01 19 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:28:01 19 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:28:01 19 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:28:01 19 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:28:01 19 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 08:28:01 19 Apr 2017 UTC 12:18:04 19 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 14150 12:18:04 19 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:21:28 19 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 14429 12:21:28 19 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:21:28 19 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:21:28 19 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:21:28 19 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:21:28 19 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170419022127 ] 12:21:28 19 Apr 2017 UTC: INFO: Base.py(1333): PID:14437 12:21:28 19 Apr 2017 UTC: INFO: Base.py(1375): Started processing 12:21:28 19 Apr 2017 UTC 12:21:28 19 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:21:30 19 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:21:30 19 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:21:30 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:21:30 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:600 calls_made:1 call_cycle:0 12:21:30 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:21:30 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:600 calls_made:1 call_cycle:0 12:21:30 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:21:30 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:600 calls_made:1 call_cycle:0 12:21:30 19 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:600 calls_made:1 call_cycle:0 2233.7520 -15801.3350 04/19/17 12:15:31 UTC) to sdrifter@soest.hawaii.edu 12:21:30 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:600 calls_made:1 call_cycle:0 12:21:30 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:21:30 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:600 calls_made:1 call_cycle:0 12:21:30 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:21:30 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:600 calls_made:1 call_cycle:0 12:21:30 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:21:30 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:600 calls_made:1 call_cycle:0 12:21:30 19 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:21:30 19 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:21:39 19 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:21:41 19 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:21:41 19 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:21:41 19 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:21:41 19 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:21:41 19 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:21:47 19 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0600lz 12:21:47 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0600lz.x00 12:21:47 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0600lz.x01 12:21:47 19 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0600lz.r in process_file_group 12:21:47 19 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260600.log 12:21:47 19 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:21:47 19 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0600dz 12:21:47 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0600dz.x00 12:21:47 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0600dz.x01 12:21:47 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0600dz.x02 12:21:47 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0600dz.x03 12:21:47 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0600dz.x04 12:21:47 19 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0600dz.r in process_file_group 12:21:47 19 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [600] 12:21:47 19 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [600] 12:21:47 19 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260600) for profiles 12:21:47 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 12:21:47 19 Apr 2017 UTC: INFO: QC.py(365): Changed (1/726) 633 to QC_PROBABLY_BAD because raw temperature spikes 12:21:47 19 Apr 2017 UTC: INFO: QC.py(180): Changed (1/726) 633 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 12:21:47 19 Apr 2017 UTC: INFO: QC.py(365): Changed (1/726) 633 to QC_INTERPOLATED because temperature spikes 12:21:47 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/726) 270:274 to QC_BAD because slow apogee CT flow 12:21:47 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/726) 1:6 to QC_BAD because prior to dive start 12:21:47 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/726) 1:6 270:274 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:21:47 19 Apr 2017 UTC: INFO: QC.py(180): Changed (11/726) 1:6 270:274 to QC_BAD because changed corrected salin implies changed speed 12:21:48 19 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:21:48 19 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 600 interp_salinity data_points in_between 359 411 % suspect thermal-inertia points 391:393 12:21:48 19 Apr 2017 UTC: INFO: QC.py(180): Changed (1/726) 633 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 12:21:48 19 Apr 2017 UTC: INFO: QC.py(180): Changed (1/726) 633 to QC_INTERPOLATED because changed corrected temp implies changed speed 12:21:48 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.59 cm/s 12:21:48 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.29 cm/s 12:21:48 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:21:48 19 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (204/726) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:21:48 19 Apr 2017 UTC: INFO: QC.py(180): Changed (1/726) 633 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 12:21:48 19 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (204/726) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 12:21:48 19 Apr 2017 UTC: INFO: QC.py(180): Changed (1/726) 633 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 12:21:48 19 Apr 2017 UTC: INFO: QC.py(180): Changed (11/726) 1:6 270:274 to QC_BAD because changed salinity implies changed optode oxygen 12:21:48 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:21:48 19 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:21:48 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 12:21:49 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 600: Data set size for profile, binned and kkyy files reduced by 11 points, a 1.52% reduction 12:21:49 19 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.600 12:21:49 19 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:21:49 19 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:21:49 19 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:21:49 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 12:21:49 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 12:27:03 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 12:27:04 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 12:27:04 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 12:28:17 19 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:28:17 19 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:28:17 19 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 12:28:17 19 Apr 2017 UTC /home/sg626/p6260600.log /home/sg626/p6260600.eng /home/sg626/p6260600.asc /home/sg626/p6260600.pro /home/sg626/p6260600.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 12:28:17 19 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:28:17 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:28:17 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:28:17 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:28:17 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:28:17 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:28:17 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:28:17 19 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:28:17 19 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:28:17 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:28:17 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:28:17 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:28:17 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:28:17 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:28:17 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:28:17 19 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:28:17 19 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 12:28:17 19 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 12:28:17 19 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 12:28:17 19 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 12:28:17 19 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:28:17 19 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:28:17 19 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:28:17 19 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 12:28:17 19 Apr 2017 UTC 16:05:28 19 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 21132 16:05:28 19 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:08:45 19 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 21255 16:08:45 19 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:08:45 19 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:08:45 19 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:08:45 19 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:08:45 19 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170419060845 ] 16:08:45 19 Apr 2017 UTC: INFO: Base.py(1333): PID:21263 16:08:45 19 Apr 2017 UTC: INFO: Base.py(1375): Started processing 16:08:45 19 Apr 2017 UTC 16:08:45 19 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:08:47 19 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:08:47 19 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:08:47 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:08:47 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:601 calls_made:1 call_cycle:0 16:08:47 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:08:47 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:601 calls_made:1 call_cycle:0 16:08:47 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:08:47 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:601 calls_made:1 call_cycle:0 16:08:47 19 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:601 calls_made:1 call_cycle:0 2233.2080 -15800.5990 04/19/17 16:03:00 UTC) to sdrifter@soest.hawaii.edu 16:08:47 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:601 calls_made:1 call_cycle:0 16:08:47 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:08:47 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:601 calls_made:1 call_cycle:0 16:08:47 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:08:47 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:601 calls_made:1 call_cycle:0 16:08:47 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:08:47 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:601 calls_made:1 call_cycle:0 16:08:47 19 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:08:47 19 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:08:56 19 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:08:58 19 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:08:58 19 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:08:58 19 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:08:58 19 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:08:58 19 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:09:04 19 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0601lz 16:09:04 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0601lz.x00 16:09:04 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0601lz.x01 16:09:04 19 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0601lz.r in process_file_group 16:09:04 19 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260601.log 16:09:04 19 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:09:04 19 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0601dz 16:09:04 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0601dz.x00 16:09:04 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0601dz.x01 16:09:04 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0601dz.x02 16:09:04 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0601dz.x03 16:09:04 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0601dz.x04 16:09:04 19 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0601dz.r in process_file_group 16:09:04 19 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [601] 16:09:04 19 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [601] 16:09:04 19 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260601) for profiles 16:09:04 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:09:05 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/688) 687 688 to QC_BAD because CT out of water 16:09:05 19 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.095m) 16:09:05 19 Apr 2017 UTC: INFO: QC.py(365): Changed (2/688) 3 267 to QC_PROBABLY_BAD because raw temperature spikes 16:09:05 19 Apr 2017 UTC: INFO: QC.py(377): Changed (1/688) 688 to QC_BAD because raw salinity below bound 16:09:05 19 Apr 2017 UTC: INFO: QC.py(180): Changed (2/688) 3 267 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:09:05 19 Apr 2017 UTC: INFO: QC.py(180): Changed (1/688) 687 to QC_BAD because changed raw cond implies changed raw salinity 16:09:05 19 Apr 2017 UTC: INFO: QC.py(365): Changed (2/688) 3 267 to QC_INTERPOLATED because temperature spikes 16:09:05 19 Apr 2017 UTC: INFO: QC.py(377): Changed (1/688) 688 to QC_BAD because salinity below bound 16:09:05 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/688) 265:269 to QC_BAD because slow apogee CT flow 16:09:05 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/688) 1:6 to QC_BAD because prior to dive start 16:09:05 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/688) 1:6 265:269 687 688 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:09:05 19 Apr 2017 UTC: INFO: QC.py(180): Changed (13/688) 1:6 265:269 687 688 to QC_BAD because changed corrected salin implies changed speed 16:09:05 19 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:09:05 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.92 cm/s 16:09:05 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.59 cm/s 16:09:05 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:09:05 19 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (195/688) 154 155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:09:05 19 Apr 2017 UTC: INFO: QC.py(180): Changed (1/688) 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:09:05 19 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (195/688) 154 155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:09:05 19 Apr 2017 UTC: INFO: QC.py(180): Changed (1/688) 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:09:05 19 Apr 2017 UTC: INFO: QC.py(180): Changed (13/688) 1:6 265:269 687 688 to QC_BAD because changed salinity implies changed optode oxygen 16:09:05 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:09:05 19 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:09:05 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:09:06 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 601: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.89% reduction 16:09:06 19 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.601 16:09:06 19 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:09:06 19 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:09:06 19 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:09:07 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:09:07 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:14:23 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 16:14:25 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:14:25 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:15:39 19 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:15:39 19 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:15:39 19 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:15:39 19 Apr 2017 UTC /home/sg626/p6260601.log /home/sg626/p6260601.eng /home/sg626/p6260601.asc /home/sg626/p6260601.pro /home/sg626/p6260601.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:15:39 19 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:15:39 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:15:39 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:15:39 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:15:39 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:15:39 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:15:39 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:15:39 19 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:15:39 19 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:15:39 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:15:39 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:15:39 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:15:39 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:15:39 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:15:39 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:15:39 19 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:15:39 19 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:15:39 19 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:15:39 19 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:15:39 19 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:15:39 19 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:15:39 19 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:15:39 19 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:15:39 19 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 16:15:39 19 Apr 2017 UTC 20:00:45 19 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 28247 20:00:45 19 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:04:07 19 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 28536 20:04:07 19 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:04:07 19 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:04:07 19 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:04:07 19 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:04:07 19 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170419100406 ] 20:04:07 19 Apr 2017 UTC: INFO: Base.py(1333): PID:28544 20:04:07 19 Apr 2017 UTC: INFO: Base.py(1375): Started processing 20:04:07 19 Apr 2017 UTC 20:04:07 19 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:04:08 19 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:04:08 19 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:04:08 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:04:08 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:602 calls_made:1 call_cycle:0 20:04:08 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:04:08 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:602 calls_made:1 call_cycle:0 20:04:08 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:04:08 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:602 calls_made:1 call_cycle:0 20:04:08 19 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:602 calls_made:1 call_cycle:0 2233.6090 -15800.3890 04/19/17 19:58:19 UTC) to sdrifter@soest.hawaii.edu 20:04:09 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:602 calls_made:1 call_cycle:0 20:04:09 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:04:09 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:602 calls_made:1 call_cycle:0 20:04:09 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:04:09 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:602 calls_made:1 call_cycle:0 20:04:09 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:04:09 19 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:602 calls_made:1 call_cycle:0 20:04:09 19 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:04:09 19 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:04:18 19 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:04:20 19 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:04:20 19 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:04:20 19 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:04:20 19 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:04:20 19 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:04:25 19 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0602lz 20:04:25 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0602lz.x00 20:04:25 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0602lz.x01 20:04:25 19 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0602lz.r in process_file_group 20:04:25 19 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260602.log 20:04:25 19 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:04:25 19 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0602dz 20:04:25 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0602dz.x00 20:04:25 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0602dz.x01 20:04:25 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0602dz.x02 20:04:25 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0602dz.x03 20:04:25 19 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0602dz.x04 20:04:25 19 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0602dz.r in process_file_group 20:04:26 19 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [602] 20:04:26 19 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [602] 20:04:26 19 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260602) for profiles 20:04:26 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 20:04:26 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/691) 691 to QC_BAD because CT out of water 20:04:26 19 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.069m) 20:04:26 19 Apr 2017 UTC: INFO: QC.py(365): Changed (4/691) 2:5 to QC_PROBABLY_BAD because raw temperature spikes 20:04:26 19 Apr 2017 UTC: INFO: QC.py(180): Changed (4/691) 2:5 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 20:04:26 19 Apr 2017 UTC: INFO: QC.py(180): Changed (1/691) 691 to QC_BAD because changed raw cond implies changed raw salinity 20:04:26 19 Apr 2017 UTC: INFO: QC.py(365): Changed (4/691) 2:5 to QC_INTERPOLATED because temperature spikes 20:04:26 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/691) 263:268 to QC_BAD because slow apogee CT flow 20:04:26 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/691) 1:6 to QC_BAD because prior to dive start 20:04:26 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/691) 1:6 263:268 691 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 20:04:26 19 Apr 2017 UTC: INFO: QC.py(180): Changed (13/691) 1:6 263:268 691 to QC_BAD because changed corrected salin implies changed speed 20:04:27 19 Apr 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 690 20:04:27 19 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 20:04:27 19 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 602 interp_salinity data_points in_between 405 418 % suspect thermal-inertia points 20:04:27 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.24 cm/s 20:04:27 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.34 cm/s 20:04:27 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 20:04:27 19 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (205/691) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 20:04:27 19 Apr 2017 UTC: INFO: QC.py(180): Changed (4/691) 2:5 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 20:04:27 19 Apr 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/691) 690 to QC_BAD because slow flow in SBE43 20:04:27 19 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (205/691) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 20:04:27 19 Apr 2017 UTC: INFO: QC.py(180): Changed (4/691) 2:5 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 20:04:27 19 Apr 2017 UTC: INFO: QC.py(180): Changed (13/691) 1:6 263:268 691 to QC_BAD because changed salinity implies changed optode oxygen 20:04:27 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 20:04:27 19 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 20:04:27 19 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 20:04:28 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 602: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.88% reduction 20:04:28 19 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.602 20:04:28 19 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:04:28 19 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:04:28 19 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:04:28 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 20:04:28 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 20:09:37 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 20:09:39 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 20:09:39 19 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 20:10:53 19 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:10:53 19 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:10:53 19 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:10:53 19 Apr 2017 UTC /home/sg626/p6260602.log /home/sg626/p6260602.eng /home/sg626/p6260602.asc /home/sg626/p6260602.pro /home/sg626/p6260602.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 20:10:53 19 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:10:53 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:10:53 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:10:53 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:10:53 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:10:53 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:10:53 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:10:53 19 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:10:53 19 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:10:53 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:10:53 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:10:53 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:10:53 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:10:53 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:10:53 19 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:10:53 19 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:10:53 19 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:10:53 19 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:10:53 19 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:10:53 19 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:10:53 19 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:10:53 19 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:10:53 19 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:10:53 19 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 20:10:53 19 Apr 2017 UTC 00:05:45 20 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 3896 00:05:45 20 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:09:02 20 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 4062 00:09:02 20 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:09:02 20 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:09:02 20 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:09:02 20 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:09:02 20 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170419140902 ] 00:09:02 20 Apr 2017 UTC: INFO: Base.py(1333): PID:4070 00:09:02 20 Apr 2017 UTC: INFO: Base.py(1375): Started processing 00:09:02 20 Apr 2017 UTC 00:09:02 20 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:09:04 20 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:09:04 20 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:09:04 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:09:04 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:603 calls_made:1 call_cycle:0 00:09:04 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:09:04 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:603 calls_made:1 call_cycle:0 00:09:04 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:09:04 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:603 calls_made:1 call_cycle:0 00:09:04 20 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:603 calls_made:1 call_cycle:0 2233.8450 -15800.0580 04/20/17 00:03:18 UTC) to sdrifter@soest.hawaii.edu 00:09:04 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:603 calls_made:1 call_cycle:0 00:09:04 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:09:04 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:603 calls_made:1 call_cycle:0 00:09:04 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:09:04 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:603 calls_made:1 call_cycle:0 00:09:04 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:09:04 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:603 calls_made:1 call_cycle:0 00:09:04 20 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:09:04 20 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:09:14 20 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:09:16 20 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:09:16 20 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:09:16 20 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:09:16 20 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:09:16 20 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:09:21 20 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0603lz 00:09:21 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0603lz.x00 00:09:21 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0603lz.x01 00:09:21 20 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0603lz.r in process_file_group 00:09:21 20 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260603.log 00:09:21 20 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:09:21 20 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0603dz 00:09:21 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0603dz.x00 00:09:21 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0603dz.x01 00:09:21 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0603dz.x02 00:09:21 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0603dz.x03 00:09:21 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0603dz.x04 00:09:21 20 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0603dz.r in process_file_group 00:09:22 20 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [603] 00:09:22 20 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [603] 00:09:22 20 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260603) for profiles 00:09:22 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 00:09:22 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/707) 705:707 to QC_BAD because CT out of water 00:09:22 20 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.143m) 00:09:22 20 Apr 2017 UTC: INFO: QC.py(365): Changed (3/707) 4 325 705 to QC_PROBABLY_BAD because raw temperature spikes 00:09:22 20 Apr 2017 UTC: INFO: QC.py(377): Changed (1/707) 706 to QC_BAD because raw salinity below bound 00:09:22 20 Apr 2017 UTC: INFO: QC.py(408): Changed (1/707) 325 to QC_PROBABLY_BAD because raw conductivity spikes 00:09:22 20 Apr 2017 UTC: INFO: QC.py(180): Changed (3/707) 4 325 705 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:09:22 20 Apr 2017 UTC: INFO: QC.py(180): Changed (2/707) 705 707 to QC_BAD because changed raw cond implies changed raw salinity 00:09:22 20 Apr 2017 UTC: INFO: QC.py(365): Changed (3/707) 4 325 705 to QC_INTERPOLATED because temperature spikes 00:09:22 20 Apr 2017 UTC: INFO: QC.py(377): Changed (1/707) 706 to QC_BAD because salinity below bound 00:09:22 20 Apr 2017 UTC: INFO: QC.py(408): Changed (1/707) 325 to QC_INTERPOLATED because conductivity spikes 00:09:22 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/707) 275:279 to QC_BAD because slow apogee CT flow 00:09:22 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/707) 1:6 to QC_BAD because prior to dive start 00:09:22 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/707) 704 to QC_BAD because end of climb 00:09:22 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/707) 1:6 275:279 704:707 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:09:22 20 Apr 2017 UTC: INFO: QC.py(180): Changed (15/707) 1:6 275:279 704:707 to QC_BAD because changed corrected salin implies changed speed 00:09:23 20 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:09:23 20 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 603 interp_salinity data_points in_between 399 415 % suspect thermal-inertia points 405 406 00:09:23 20 Apr 2017 UTC: INFO: QC.py(180): Changed (1/707) 325 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 00:09:23 20 Apr 2017 UTC: INFO: QC.py(180): Changed (1/707) 325 to QC_INTERPOLATED because changed corrected temp implies changed speed 00:09:23 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.78 cm/s 00:09:23 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.42 cm/s 00:09:23 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:09:23 20 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (213/707) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:09:23 20 Apr 2017 UTC: INFO: QC.py(180): Changed (2/707) 4 705 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:09:23 20 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (213/707) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 00:09:23 20 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/707) 704 to QC_BAD because bad aa4330 oyxgen 00:09:23 20 Apr 2017 UTC: INFO: QC.py(180): Changed (2/707) 4 705 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:09:23 20 Apr 2017 UTC: INFO: QC.py(180): Changed (14/707) 1:6 275:279 705:707 to QC_BAD because changed salinity implies changed optode oxygen 00:09:23 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:09:23 20 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:09:23 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 00:09:23 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 603: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.12% reduction 00:09:24 20 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.603 00:09:24 20 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:09:24 20 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:09:24 20 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:09:24 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 00:09:24 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 00:14:40 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 00:14:42 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 00:14:42 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 00:15:55 20 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:15:55 20 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:15:55 20 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:15:55 20 Apr 2017 UTC /home/sg626/p6260603.log /home/sg626/p6260603.eng /home/sg626/p6260603.asc /home/sg626/p6260603.pro /home/sg626/p6260603.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 00:15:55 20 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:15:55 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:15:55 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:15:55 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:15:55 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:15:55 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:15:55 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:15:55 20 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:15:55 20 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:15:55 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:15:55 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:15:55 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:15:55 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:15:55 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:15:55 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:15:55 20 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:15:55 20 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:15:55 20 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:15:55 20 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:15:55 20 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:15:55 20 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:15:55 20 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:15:55 20 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:15:55 20 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 00:15:55 20 Apr 2017 UTC 04:04:56 20 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 11218 04:04:56 20 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:08:22 20 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 11337 04:08:22 20 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:08:22 20 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:08:22 20 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:08:22 20 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:08:22 20 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170419180822 ] 04:08:22 20 Apr 2017 UTC: INFO: Base.py(1333): PID:11345 04:08:22 20 Apr 2017 UTC: INFO: Base.py(1375): Started processing 04:08:22 20 Apr 2017 UTC 04:08:22 20 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:08:24 20 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:08:24 20 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:08:24 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:08:24 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:604 calls_made:1 call_cycle:0 04:08:24 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:08:24 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:604 calls_made:1 call_cycle:0 04:08:24 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:08:24 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:604 calls_made:1 call_cycle:0 04:08:24 20 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:604 calls_made:1 call_cycle:0 2234.8650 -15800.6870 04/20/17 04:02:24 UTC) to sdrifter@soest.hawaii.edu 04:08:24 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:604 calls_made:1 call_cycle:0 04:08:24 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:08:24 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:604 calls_made:1 call_cycle:0 04:08:24 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:08:24 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:604 calls_made:1 call_cycle:0 04:08:24 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:08:24 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:604 calls_made:1 call_cycle:0 04:08:24 20 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:08:24 20 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:08:34 20 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:08:36 20 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:08:36 20 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:08:36 20 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:08:36 20 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:08:36 20 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:08:42 20 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0604lz 04:08:42 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0604lz.x00 04:08:42 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0604lz.x01 04:08:42 20 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0604lz.r in process_file_group 04:08:42 20 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260604.log 04:08:42 20 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:08:42 20 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0604dz 04:08:42 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0604dz.x00 04:08:42 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0604dz.x01 04:08:42 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0604dz.x02 04:08:42 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0604dz.x03 04:08:42 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0604dz.x04 04:08:42 20 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0604dz.r in process_file_group 04:08:42 20 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [604] 04:08:42 20 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [604] 04:08:42 20 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260604) for profiles 04:08:42 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 04:08:42 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/712) 711 712 to QC_BAD because CT out of water 04:08:42 20 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.080m) 04:08:42 20 Apr 2017 UTC: INFO: QC.py(365): Changed (2/712) 2 3 to QC_PROBABLY_BAD because raw temperature spikes 04:08:42 20 Apr 2017 UTC: INFO: QC.py(377): Changed (1/712) 712 to QC_BAD because raw salinity below bound 04:08:42 20 Apr 2017 UTC: INFO: QC.py(180): Changed (2/712) 2 3 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:08:42 20 Apr 2017 UTC: INFO: QC.py(180): Changed (1/712) 711 to QC_BAD because changed raw cond implies changed raw salinity 04:08:42 20 Apr 2017 UTC: INFO: QC.py(365): Changed (2/712) 2 3 to QC_INTERPOLATED because temperature spikes 04:08:42 20 Apr 2017 UTC: INFO: QC.py(377): Changed (1/712) 712 to QC_BAD because salinity below bound 04:08:42 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/712) 260:264 to QC_BAD because slow apogee CT flow 04:08:42 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/712) 1:6 to QC_BAD because prior to dive start 04:08:42 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/712) 1:6 260:264 711 712 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:08:42 20 Apr 2017 UTC: INFO: QC.py(180): Changed (13/712) 1:6 260:264 711 712 to QC_BAD because changed corrected salin implies changed speed 04:08:43 20 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:08:43 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.11 cm/s 04:08:43 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.53 cm/s 04:08:43 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:08:43 20 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (205/712) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:08:43 20 Apr 2017 UTC: INFO: QC.py(180): Changed (2/712) 2 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:08:43 20 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (205/712) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 04:08:43 20 Apr 2017 UTC: INFO: QC.py(180): Changed (2/712) 2 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:08:43 20 Apr 2017 UTC: INFO: QC.py(180): Changed (13/712) 1:6 260:264 711 712 to QC_BAD because changed salinity implies changed optode oxygen 04:08:43 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:08:43 20 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:08:43 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 04:08:44 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 604: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.83% reduction 04:08:44 20 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.604 04:08:44 20 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:08:44 20 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:08:44 20 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:08:44 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 04:08:44 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 04:13:55 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 04:13:57 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 04:13:57 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 04:15:12 20 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:15:12 20 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:15:12 20 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:15:12 20 Apr 2017 UTC /home/sg626/p6260604.log /home/sg626/p6260604.eng /home/sg626/p6260604.asc /home/sg626/p6260604.pro /home/sg626/p6260604.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 04:15:12 20 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:15:12 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:15:12 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:15:12 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:15:12 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:15:12 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:15:12 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:15:12 20 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:15:12 20 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:15:12 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:15:12 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:15:12 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:15:12 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:15:12 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:15:12 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:15:12 20 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:15:12 20 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:15:12 20 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:15:12 20 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:15:12 20 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:15:12 20 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:15:12 20 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:15:12 20 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:15:12 20 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 04:15:12 20 Apr 2017 UTC 07:57:42 20 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 18477 07:57:42 20 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:00:50 20 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 18670 08:00:50 20 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:00:50 20 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:00:50 20 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:00:50 20 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:00:50 20 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170419220050 ] 08:00:50 20 Apr 2017 UTC: INFO: Base.py(1333): PID:18678 08:00:50 20 Apr 2017 UTC: INFO: Base.py(1375): Started processing 08:00:50 20 Apr 2017 UTC 08:00:50 20 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:00:52 20 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:00:52 20 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:00:52 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:00:52 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:605 calls_made:2 call_cycle:0 08:00:52 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:00:52 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:605 calls_made:2 call_cycle:0 08:00:52 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:00:52 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:605 calls_made:2 call_cycle:0 08:00:52 20 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:605 calls_made:2 call_cycle:0 2233.0710 -15800.6470 04/20/17 07:53:30 UTC) to sdrifter@soest.hawaii.edu 08:00:52 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:605 calls_made:2 call_cycle:0 08:00:52 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:00:52 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:605 calls_made:2 call_cycle:0 08:00:52 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:00:52 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:605 calls_made:2 call_cycle:0 08:00:52 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:00:52 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:605 calls_made:2 call_cycle:0 08:00:52 20 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:00:52 20 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:01:02 20 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:01:04 20 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:01:04 20 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:01:04 20 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:01:04 20 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:01:04 20 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:01:10 20 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0605lz 08:01:10 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0605lz.x00 08:01:10 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0605lz.x01 08:01:10 20 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0605lz.r in process_file_group 08:01:10 20 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260605.log 08:01:10 20 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:01:10 20 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0605dz 08:01:10 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0605dz.x00 08:01:10 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0605dz.x01 08:01:10 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0605dz.x02 08:01:10 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0605dz.x03 08:01:10 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0605dz.x04 08:01:10 20 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0605dz.r in process_file_group 08:01:10 20 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [605] 08:01:10 20 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [605] 08:01:11 20 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260605) for profiles 08:01:11 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:01:11 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/676) 674:676 to QC_BAD because CT out of water 08:01:11 20 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.191m) 08:01:11 20 Apr 2017 UTC: INFO: QC.py(365): Changed (2/676) 2 675 to QC_PROBABLY_BAD because raw temperature spikes 08:01:11 20 Apr 2017 UTC: INFO: QC.py(377): Changed (1/676) 675 to QC_BAD because raw salinity below bound 08:01:11 20 Apr 2017 UTC: INFO: QC.py(408): Changed (1/676) 249 to QC_PROBABLY_BAD because raw conductivity spikes 08:01:11 20 Apr 2017 UTC: INFO: QC.py(180): Changed (1/676) 2 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:01:11 20 Apr 2017 UTC: INFO: QC.py(180): Changed (1/676) 249 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 08:01:11 20 Apr 2017 UTC: INFO: QC.py(180): Changed (2/676) 674 676 to QC_BAD because changed raw cond implies changed raw salinity 08:01:11 20 Apr 2017 UTC: INFO: QC.py(365): Changed (2/676) 2 675 to QC_INTERPOLATED because temperature spikes 08:01:11 20 Apr 2017 UTC: INFO: QC.py(377): Changed (1/676) 675 to QC_BAD because salinity below bound 08:01:11 20 Apr 2017 UTC: INFO: QC.py(408): Changed (1/676) 249 to QC_INTERPOLATED because conductivity spikes 08:01:11 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/676) 248:252 to QC_BAD because slow apogee CT flow 08:01:11 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/676) 1:6 to QC_BAD because prior to dive start 08:01:11 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/676) 1:6 248:252 674:676 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:01:11 20 Apr 2017 UTC: INFO: QC.py(180): Changed (14/676) 1:6 248:252 674:676 to QC_BAD because changed corrected salin implies changed speed 08:01:12 20 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:01:12 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.21 cm/s 08:01:12 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.43 cm/s 08:01:12 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:01:12 20 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (204/676) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:01:12 20 Apr 2017 UTC: INFO: QC.py(180): Changed (2/676) 2 675 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:01:12 20 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (204/676) 132:135 137:140 142:145 147:150 152:155 157:160 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:01:12 20 Apr 2017 UTC: INFO: QC.py(180): Changed (2/676) 2 675 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:01:12 20 Apr 2017 UTC: INFO: QC.py(180): Changed (14/676) 1:6 248:252 674:676 to QC_BAD because changed salinity implies changed optode oxygen 08:01:12 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:01:12 20 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:01:12 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 08:01:12 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 605: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.07% reduction 08:01:12 20 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.605 08:01:12 20 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:01:12 20 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:01:12 20 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:01:13 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 08:01:13 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 08:06:26 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 08:06:28 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 08:06:28 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 08:07:42 20 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:07:42 20 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:07:42 20 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:07:42 20 Apr 2017 UTC /home/sg626/p6260605.log /home/sg626/p6260605.eng /home/sg626/p6260605.asc /home/sg626/p6260605.pro /home/sg626/p6260605.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 08:07:42 20 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:07:42 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:07:42 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:07:42 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:07:42 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:07:42 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:07:42 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:07:42 20 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:07:42 20 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:07:42 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:07:42 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:07:42 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:07:42 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:07:42 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:07:42 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:07:42 20 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:07:42 20 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:07:42 20 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:07:42 20 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:07:42 20 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:07:42 20 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:07:42 20 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:07:42 20 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:07:42 20 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 08:07:42 20 Apr 2017 UTC 11:48:32 20 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 25812 11:48:32 20 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 11:51:51 20 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 26091 11:51:51 20 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:51:51 20 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 11:51:51 20 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 11:51:51 20 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:51:51 20 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170420015150 ] 11:51:51 20 Apr 2017 UTC: INFO: Base.py(1333): PID:26098 11:51:51 20 Apr 2017 UTC: INFO: Base.py(1375): Started processing 11:51:51 20 Apr 2017 UTC 11:51:51 20 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 11:51:52 20 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 11:51:52 20 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:51:52 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:51:52 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:606 calls_made:1 call_cycle:0 11:51:52 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:51:52 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:606 calls_made:1 call_cycle:0 11:51:52 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:51:52 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:606 calls_made:1 call_cycle:0 11:51:52 20 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:606 calls_made:1 call_cycle:0 2233.8820 -15800.3890 04/20/17 11:46:00 UTC) to sdrifter@soest.hawaii.edu 11:51:52 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:606 calls_made:1 call_cycle:0 11:51:52 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:51:52 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:606 calls_made:1 call_cycle:0 11:51:52 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:51:52 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:606 calls_made:1 call_cycle:0 11:51:52 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:51:52 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:606 calls_made:1 call_cycle:0 11:51:52 20 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:51:52 20 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:52:02 20 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:52:04 20 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:52:04 20 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 11:52:04 20 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:52:04 20 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:52:04 20 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 11:52:10 20 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0606lz 11:52:10 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0606lz.x00 11:52:10 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0606lz.x01 11:52:10 20 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0606lz.r in process_file_group 11:52:10 20 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260606.log 11:52:10 20 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 11:52:10 20 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0606dz 11:52:10 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0606dz.x00 11:52:10 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0606dz.x01 11:52:10 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0606dz.x02 11:52:10 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0606dz.x03 11:52:10 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0606dz.x04 11:52:10 20 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0606dz.r in process_file_group 11:52:10 20 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [606] 11:52:10 20 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [606] 11:52:10 20 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260606) for profiles 11:52:10 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 11:52:11 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/669) 668 669 to QC_BAD because CT out of water 11:52:11 20 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.136m) 11:52:11 20 Apr 2017 UTC: INFO: QC.py(365): Changed (2/669) 2 300 to QC_PROBABLY_BAD because raw temperature spikes 11:52:11 20 Apr 2017 UTC: INFO: QC.py(377): Changed (1/669) 669 to QC_BAD because raw salinity below bound 11:52:11 20 Apr 2017 UTC: INFO: QC.py(408): Changed (1/669) 300 to QC_PROBABLY_BAD because raw conductivity spikes 11:52:11 20 Apr 2017 UTC: INFO: QC.py(180): Changed (2/669) 2 300 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 11:52:11 20 Apr 2017 UTC: INFO: QC.py(180): Changed (1/669) 668 to QC_BAD because changed raw cond implies changed raw salinity 11:52:11 20 Apr 2017 UTC: INFO: QC.py(365): Changed (2/669) 2 300 to QC_INTERPOLATED because temperature spikes 11:52:11 20 Apr 2017 UTC: INFO: QC.py(377): Changed (1/669) 669 to QC_BAD because salinity below bound 11:52:11 20 Apr 2017 UTC: INFO: QC.py(408): Changed (1/669) 300 to QC_INTERPOLATED because conductivity spikes 11:52:11 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/669) 263:267 to QC_BAD because slow apogee CT flow 11:52:11 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/669) 1:6 to QC_BAD because prior to dive start 11:52:11 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/669) 1:6 263:267 668 669 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 11:52:11 20 Apr 2017 UTC: INFO: QC.py(180): Changed (13/669) 1:6 263:267 668 669 to QC_BAD because changed corrected salin implies changed speed 11:52:11 20 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 11:52:11 20 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 606 interp_salinity data_points in_between 367 398 % suspect thermal-inertia points 389 11:52:11 20 Apr 2017 UTC: INFO: QC.py(180): Changed (1/669) 300 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 11:52:11 20 Apr 2017 UTC: INFO: QC.py(180): Changed (1/669) 300 to QC_INTERPOLATED because changed corrected temp implies changed speed 11:52:11 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.16 cm/s 11:52:11 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.32 cm/s 11:52:11 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 11:52:11 20 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (201/669) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 11:52:11 20 Apr 2017 UTC: INFO: QC.py(180): Changed (1/669) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 11:52:11 20 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (201/669) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 11:52:11 20 Apr 2017 UTC: INFO: QC.py(180): Changed (1/669) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 11:52:11 20 Apr 2017 UTC: INFO: QC.py(180): Changed (13/669) 1:6 263:267 668 669 to QC_BAD because changed salinity implies changed optode oxygen 11:52:11 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 11:52:11 20 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 11:52:11 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 11:52:12 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 606: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.94% reduction 11:52:12 20 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.606 11:52:12 20 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:52:12 20 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:52:12 20 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:52:12 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 11:52:12 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 11:57:25 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 11:57:27 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 11:57:27 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 11:58:42 20 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:58:42 20 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:58:42 20 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:58:42 20 Apr 2017 UTC /home/sg626/p6260606.log /home/sg626/p6260606.eng /home/sg626/p6260606.asc /home/sg626/p6260606.pro /home/sg626/p6260606.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 11:58:42 20 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:58:42 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:58:42 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:58:42 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:58:42 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:58:42 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:58:42 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:58:42 20 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:58:42 20 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:58:42 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:58:42 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:58:42 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:58:42 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:58:42 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:58:42 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:58:42 20 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:58:42 20 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 11:58:42 20 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 11:58:42 20 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 11:58:42 20 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 11:58:42 20 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:58:42 20 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:58:42 20 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:58:42 20 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 11:58:42 20 Apr 2017 UTC 15:45:59 20 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 1200 15:45:59 20 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 15:49:11 20 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 1307 15:49:11 20 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 15:49:11 20 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 15:49:11 20 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 15:49:11 20 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 15:49:11 20 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170420054910 ] 15:49:11 20 Apr 2017 UTC: INFO: Base.py(1333): PID:1315 15:49:11 20 Apr 2017 UTC: INFO: Base.py(1375): Started processing 15:49:11 20 Apr 2017 UTC 15:49:11 20 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 15:49:12 20 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 15:49:12 20 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 15:49:12 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:49:12 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:607 calls_made:1 call_cycle:0 15:49:12 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:49:12 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:607 calls_made:1 call_cycle:0 15:49:12 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:49:12 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:607 calls_made:1 call_cycle:0 15:49:12 20 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:607 calls_made:1 call_cycle:0 2233.8750 -15759.5150 04/20/17 15:43:30 UTC) to sdrifter@soest.hawaii.edu 15:49:12 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:607 calls_made:1 call_cycle:0 15:49:12 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:49:12 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:607 calls_made:1 call_cycle:0 15:49:12 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:49:12 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:607 calls_made:1 call_cycle:0 15:49:12 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:49:12 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:607 calls_made:1 call_cycle:0 15:49:12 20 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:49:12 20 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 15:49:22 20 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 15:49:24 20 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 15:49:24 20 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 15:49:24 20 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 15:49:24 20 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 15:49:24 20 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 15:49:30 20 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0607lz 15:49:30 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0607lz.x00 15:49:30 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0607lz.x01 15:49:30 20 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0607lz.r in process_file_group 15:49:30 20 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260607.log 15:49:30 20 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 15:49:30 20 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0607dz 15:49:30 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0607dz.x00 15:49:30 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0607dz.x01 15:49:30 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0607dz.x02 15:49:30 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0607dz.x03 15:49:30 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0607dz.x04 15:49:30 20 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0607dz.r in process_file_group 15:49:30 20 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [607] 15:49:30 20 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [607] 15:49:30 20 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260607) for profiles 15:49:30 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 15:49:31 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/683) 681:683 to QC_BAD because CT out of water 15:49:31 20 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.073m) 15:49:31 20 Apr 2017 UTC: INFO: QC.py(365): Changed (5/683) 2:4 302 680 to QC_PROBABLY_BAD because raw temperature spikes 15:49:31 20 Apr 2017 UTC: INFO: QC.py(377): Changed (1/683) 683 to QC_BAD because raw salinity below bound 15:49:31 20 Apr 2017 UTC: INFO: QC.py(408): Changed (1/683) 302 to QC_PROBABLY_BAD because raw conductivity spikes 15:49:31 20 Apr 2017 UTC: INFO: QC.py(180): Changed (5/683) 2:4 302 680 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 15:49:31 20 Apr 2017 UTC: INFO: QC.py(180): Changed (2/683) 681 682 to QC_BAD because changed raw cond implies changed raw salinity 15:49:31 20 Apr 2017 UTC: INFO: QC.py(365): Changed (5/683) 2:4 302 680 to QC_INTERPOLATED because temperature spikes 15:49:31 20 Apr 2017 UTC: INFO: QC.py(377): Changed (1/683) 683 to QC_BAD because salinity below bound 15:49:31 20 Apr 2017 UTC: INFO: QC.py(408): Changed (1/683) 302 to QC_INTERPOLATED because conductivity spikes 15:49:31 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/683) 257:261 to QC_BAD because slow apogee CT flow 15:49:31 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/683) 1:6 to QC_BAD because prior to dive start 15:49:31 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/683) 680 to QC_BAD because end of climb 15:49:31 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/683) 1:6 257:261 680:683 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 15:49:31 20 Apr 2017 UTC: INFO: QC.py(180): Changed (15/683) 1:6 257:261 680:683 to QC_BAD because changed corrected salin implies changed speed 15:49:31 20 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 15:49:31 20 Apr 2017 UTC: INFO: QC.py(180): Changed (1/683) 302 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 15:49:31 20 Apr 2017 UTC: INFO: QC.py(180): Changed (1/683) 302 to QC_INTERPOLATED because changed corrected temp implies changed speed 15:49:31 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.56 cm/s 15:49:31 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.57 cm/s 15:49:31 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 15:49:31 20 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (205/683) 135 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 15:49:31 20 Apr 2017 UTC: INFO: QC.py(180): Changed (4/683) 2:4 680 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 15:49:31 20 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (205/683) 135 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 15:49:31 20 Apr 2017 UTC: INFO: QC.py(180): Changed (4/683) 2:4 680 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 15:49:31 20 Apr 2017 UTC: INFO: QC.py(180): Changed (15/683) 1:6 257:261 680:683 to QC_BAD because changed salinity implies changed optode oxygen 15:49:31 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 15:49:31 20 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 15:49:31 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 15:49:32 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 607: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.20% reduction 15:49:32 20 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.607 15:49:32 20 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 15:49:32 20 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 15:49:32 20 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 15:49:32 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 15:49:32 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 15:54:47 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 15:54:49 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 15:54:49 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 15:56:04 20 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 15:56:04 20 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 15:56:04 20 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 15:56:04 20 Apr 2017 UTC /home/sg626/p6260607.log /home/sg626/p6260607.eng /home/sg626/p6260607.asc /home/sg626/p6260607.pro /home/sg626/p6260607.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 15:56:04 20 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 15:56:04 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:56:04 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:56:04 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:56:04 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:56:04 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:56:04 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:56:04 20 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:56:04 20 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 15:56:04 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:56:04 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:56:04 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:56:04 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:56:04 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:56:04 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:56:04 20 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:56:04 20 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 15:56:04 20 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 15:56:04 20 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 15:56:04 20 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 15:56:04 20 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 15:56:04 20 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 15:56:04 20 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 15:56:04 20 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 15:56:04 20 Apr 2017 UTC 19:44:19 20 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 9095 19:44:19 20 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:47:43 20 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 9228 19:47:43 20 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:47:43 20 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:47:43 20 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:47:43 20 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:47:43 20 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170420094742 ] 19:47:43 20 Apr 2017 UTC: INFO: Base.py(1333): PID:9235 19:47:43 20 Apr 2017 UTC: INFO: Base.py(1375): Started processing 19:47:43 20 Apr 2017 UTC 19:47:43 20 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:47:45 20 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:47:45 20 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:47:45 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:47:45 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:608 calls_made:1 call_cycle:0 19:47:45 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:47:45 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:608 calls_made:1 call_cycle:0 19:47:45 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:47:45 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:608 calls_made:1 call_cycle:0 19:47:45 20 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:608 calls_made:1 call_cycle:0 2233.5550 -15801.6590 04/20/17 19:41:48 UTC) to sdrifter@soest.hawaii.edu 19:47:45 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:608 calls_made:1 call_cycle:0 19:47:45 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:47:45 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:608 calls_made:1 call_cycle:0 19:47:45 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:47:45 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:608 calls_made:1 call_cycle:0 19:47:45 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:47:45 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:608 calls_made:1 call_cycle:0 19:47:45 20 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:47:45 20 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:47:55 20 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:47:56 20 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:47:56 20 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:47:56 20 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:47:56 20 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:47:56 20 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:48:02 20 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0608lz 19:48:02 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0608lz.x00 19:48:02 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0608lz.x01 19:48:02 20 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0608lz.r in process_file_group 19:48:02 20 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260608.log 19:48:02 20 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:48:02 20 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0608dz 19:48:02 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0608dz.x00 19:48:02 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0608dz.x01 19:48:02 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0608dz.x02 19:48:02 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0608dz.x03 19:48:02 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0608dz.x04 19:48:02 20 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0608dz.r in process_file_group 19:48:03 20 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [608] 19:48:03 20 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [608] 19:48:03 20 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260608) for profiles 19:48:03 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 19:48:03 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/707) 705:707 to QC_BAD because CT out of water 19:48:03 20 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.100m) 19:48:03 20 Apr 2017 UTC: INFO: QC.py(365): Changed (3/707) 3 4 706 to QC_PROBABLY_BAD because raw temperature spikes 19:48:03 20 Apr 2017 UTC: INFO: QC.py(377): Changed (1/707) 707 to QC_BAD because raw salinity below bound 19:48:03 20 Apr 2017 UTC: INFO: QC.py(408): Changed (1/707) 222 to QC_PROBABLY_BAD because raw conductivity spikes 19:48:03 20 Apr 2017 UTC: INFO: QC.py(180): Changed (3/707) 3 4 706 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:48:03 20 Apr 2017 UTC: INFO: QC.py(180): Changed (1/707) 222 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 19:48:03 20 Apr 2017 UTC: INFO: QC.py(180): Changed (2/707) 705 706 to QC_BAD because changed raw cond implies changed raw salinity 19:48:03 20 Apr 2017 UTC: INFO: QC.py(365): Changed (3/707) 3 4 706 to QC_INTERPOLATED because temperature spikes 19:48:03 20 Apr 2017 UTC: INFO: QC.py(377): Changed (1/707) 707 to QC_BAD because salinity below bound 19:48:03 20 Apr 2017 UTC: INFO: QC.py(408): Changed (1/707) 222 to QC_INTERPOLATED because conductivity spikes 19:48:03 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/707) 268:272 to QC_BAD because slow apogee CT flow 19:48:03 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/707) 1:6 to QC_BAD because prior to dive start 19:48:03 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/707) 1:6 268:272 705:707 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:48:03 20 Apr 2017 UTC: INFO: QC.py(180): Changed (14/707) 1:6 268:272 705:707 to QC_BAD because changed corrected salin implies changed speed 19:48:04 20 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:48:04 20 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 608 interp_salinity data_points in_between 368 397 % suspect thermal-inertia points 395 19:48:04 20 Apr 2017 UTC: INFO: QC.py(180): Changed (1/707) 222 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 19:48:04 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.52 cm/s 19:48:04 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.38 cm/s 19:48:04 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:48:04 20 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (208/707) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:48:04 20 Apr 2017 UTC: INFO: QC.py(180): Changed (3/707) 3 4 706 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 19:48:04 20 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (208/707) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 19:48:04 20 Apr 2017 UTC: INFO: QC.py(180): Changed (3/707) 3 4 706 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 19:48:04 20 Apr 2017 UTC: INFO: QC.py(180): Changed (14/707) 1:6 268:272 705:707 to QC_BAD because changed salinity implies changed optode oxygen 19:48:04 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:48:04 20 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:48:04 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 19:48:04 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 608: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.98% reduction 19:48:04 20 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.608 19:48:04 20 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:48:04 20 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:48:04 20 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:48:05 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 19:48:05 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 19:53:19 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 19:53:21 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 19:53:21 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 19:54:35 20 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:54:35 20 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:54:35 20 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:54:35 20 Apr 2017 UTC /home/sg626/p6260608.log /home/sg626/p6260608.eng /home/sg626/p6260608.asc /home/sg626/p6260608.pro /home/sg626/p6260608.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 19:54:35 20 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:54:35 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:54:35 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:54:35 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:54:35 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:54:35 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:54:35 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:54:35 20 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:54:35 20 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:54:35 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:54:35 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:54:35 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:54:35 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:54:35 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:54:35 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:54:35 20 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:54:35 20 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:54:35 20 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:54:35 20 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:54:35 20 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:54:35 20 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:54:35 20 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:54:35 20 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:54:35 20 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 19:54:35 20 Apr 2017 UTC 23:34:02 20 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 16246 23:34:02 20 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 23:37:20 20 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 16371 23:37:20 20 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:37:20 20 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:37:20 20 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:37:20 20 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:37:20 20 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170420133720 ] 23:37:20 20 Apr 2017 UTC: INFO: Base.py(1333): PID:16378 23:37:20 20 Apr 2017 UTC: INFO: Base.py(1375): Started processing 23:37:20 20 Apr 2017 UTC 23:37:20 20 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:37:22 20 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:37:22 20 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:37:22 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:37:22 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:609 calls_made:1 call_cycle:0 23:37:22 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:37:22 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:609 calls_made:1 call_cycle:0 23:37:22 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:37:22 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:609 calls_made:1 call_cycle:0 23:37:22 20 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:609 calls_made:1 call_cycle:0 2233.2760 -15801.0340 04/20/17 23:31:30 UTC) to sdrifter@soest.hawaii.edu 23:37:22 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:609 calls_made:1 call_cycle:0 23:37:22 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:37:22 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:609 calls_made:1 call_cycle:0 23:37:22 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:37:22 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:609 calls_made:1 call_cycle:0 23:37:22 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:37:22 20 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:609 calls_made:1 call_cycle:0 23:37:22 20 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:37:22 20 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:37:32 20 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:37:34 20 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:37:34 20 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:37:34 20 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:37:34 20 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:37:34 20 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:37:40 20 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0609lz 23:37:40 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0609lz.x00 23:37:40 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0609lz.x01 23:37:40 20 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0609lz.r in process_file_group 23:37:40 20 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260609.log 23:37:40 20 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:37:40 20 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0609dz 23:37:40 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0609dz.x00 23:37:40 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0609dz.x01 23:37:40 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0609dz.x02 23:37:40 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0609dz.x03 23:37:40 20 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0609dz.x04 23:37:40 20 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0609dz.r in process_file_group 23:37:40 20 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [609] 23:37:40 20 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [609] 23:37:41 20 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260609) for profiles 23:37:41 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 23:37:41 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/685) 685 to QC_BAD because CT out of water 23:37:41 20 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.022m) 23:37:41 20 Apr 2017 UTC: INFO: QC.py(365): Changed (1/685) 3 to QC_PROBABLY_BAD because raw temperature spikes 23:37:41 20 Apr 2017 UTC: INFO: QC.py(408): Changed (1/685) 207 to QC_PROBABLY_BAD because raw conductivity spikes 23:37:41 20 Apr 2017 UTC: INFO: QC.py(180): Changed (1/685) 3 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 23:37:41 20 Apr 2017 UTC: INFO: QC.py(180): Changed (1/685) 207 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 23:37:41 20 Apr 2017 UTC: INFO: QC.py(180): Changed (1/685) 685 to QC_BAD because changed raw cond implies changed raw salinity 23:37:41 20 Apr 2017 UTC: INFO: QC.py(365): Changed (1/685) 3 to QC_INTERPOLATED because temperature spikes 23:37:41 20 Apr 2017 UTC: INFO: QC.py(408): Changed (1/685) 207 to QC_INTERPOLATED because conductivity spikes 23:37:41 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/685) 257:261 to QC_BAD because slow apogee CT flow 23:37:41 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/685) 1:6 to QC_BAD because prior to dive start 23:37:41 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/685) 684 to QC_BAD because end of climb 23:37:41 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/685) 1:6 257:261 684 685 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 23:37:41 20 Apr 2017 UTC: INFO: QC.py(180): Changed (13/685) 1:6 257:261 684 685 to QC_BAD because changed corrected salin implies changed speed 23:37:41 20 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 23:37:41 20 Apr 2017 UTC: INFO: QC.py(180): Changed (1/685) 207 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 23:37:41 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.61 cm/s 23:37:41 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.42 cm/s 23:37:41 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 23:37:41 20 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (199/685) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 23:37:41 20 Apr 2017 UTC: INFO: QC.py(180): Changed (1/685) 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 23:37:41 20 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (199/685) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 23:37:41 20 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (3/685) 681 682 685 to QC_BAD because bad aa4330 oyxgen 23:37:41 20 Apr 2017 UTC: INFO: QC.py(180): Changed (1/685) 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 23:37:41 20 Apr 2017 UTC: INFO: QC.py(180): Changed (12/685) 1:6 257:261 684 to QC_BAD because changed salinity implies changed optode oxygen 23:37:41 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 23:37:41 20 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 23:37:41 20 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 23:37:42 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 609: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.90% reduction 23:37:42 20 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.609 23:37:42 20 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:37:42 20 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:37:42 20 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:37:42 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 23:37:42 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 23:42:59 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 23:43:01 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 23:43:01 20 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 23:44:16 20 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:44:16 20 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:44:16 20 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:44:16 20 Apr 2017 UTC /home/sg626/p6260609.log /home/sg626/p6260609.eng /home/sg626/p6260609.asc /home/sg626/p6260609.pro /home/sg626/p6260609.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 23:44:16 20 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:44:16 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:44:16 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:44:16 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:44:16 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:44:16 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:44:16 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:44:16 20 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:44:16 20 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:44:16 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:44:16 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:44:16 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:44:16 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:44:16 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:44:16 20 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:44:16 20 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:44:16 20 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:44:16 20 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:44:16 20 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:44:16 20 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:44:16 20 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:44:16 20 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:44:16 20 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:44:16 20 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 23:44:16 20 Apr 2017 UTC 03:32:47 21 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 23781 03:32:47 21 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:36:04 21 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 23903 03:36:04 21 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:36:04 21 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:36:04 21 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:36:04 21 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:36:04 21 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170420173603 ] 03:36:04 21 Apr 2017 UTC: INFO: Base.py(1333): PID:23911 03:36:04 21 Apr 2017 UTC: INFO: Base.py(1375): Started processing 03:36:04 21 Apr 2017 UTC 03:36:04 21 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:36:05 21 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:36:05 21 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:36:05 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:36:05 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:610 calls_made:1 call_cycle:0 03:36:05 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:36:05 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:610 calls_made:1 call_cycle:0 03:36:05 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:36:05 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:610 calls_made:1 call_cycle:0 03:36:05 21 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:610 calls_made:1 call_cycle:0 2233.5260 -15800.7680 04/21/17 03:30:18 UTC) to sdrifter@soest.hawaii.edu 03:36:06 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:610 calls_made:1 call_cycle:0 03:36:06 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:36:06 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:610 calls_made:1 call_cycle:0 03:36:06 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:36:06 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:610 calls_made:1 call_cycle:0 03:36:06 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:36:06 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:610 calls_made:1 call_cycle:0 03:36:06 21 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:36:06 21 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:36:15 21 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:36:17 21 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:36:17 21 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:36:17 21 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:36:17 21 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:36:17 21 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:36:23 21 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0610lz 03:36:23 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0610lz.x00 03:36:23 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0610lz.x01 03:36:23 21 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0610lz.r in process_file_group 03:36:23 21 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260610.log 03:36:23 21 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:36:23 21 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0610dz 03:36:23 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0610dz.x00 03:36:23 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0610dz.x01 03:36:23 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0610dz.x02 03:36:23 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0610dz.x03 03:36:23 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0610dz.x04 03:36:23 21 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0610dz.r in process_file_group 03:36:23 21 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [610] 03:36:23 21 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [610] 03:36:24 21 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260610) for profiles 03:36:24 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 03:36:24 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (4/718) 715:718 to QC_BAD because CT out of water 03:36:24 21 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.130m) 03:36:24 21 Apr 2017 UTC: INFO: QC.py(365): Changed (3/718) 2 257 717 to QC_PROBABLY_BAD because raw temperature spikes 03:36:24 21 Apr 2017 UTC: INFO: QC.py(377): Changed (2/718) 716 717 to QC_BAD because raw salinity below bound 03:36:24 21 Apr 2017 UTC: INFO: QC.py(180): Changed (2/718) 2 257 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 03:36:24 21 Apr 2017 UTC: INFO: QC.py(180): Changed (2/718) 715 718 to QC_BAD because changed raw cond implies changed raw salinity 03:36:24 21 Apr 2017 UTC: INFO: QC.py(365): Changed (3/718) 2 257 717 to QC_INTERPOLATED because temperature spikes 03:36:24 21 Apr 2017 UTC: INFO: QC.py(377): Changed (2/718) 716 717 to QC_BAD because salinity below bound 03:36:24 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/718) 255:259 to QC_BAD because slow apogee CT flow 03:36:24 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/718) 1:6 to QC_BAD because prior to dive start 03:36:24 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/718) 714 to QC_BAD because end of climb 03:36:24 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/718) 1:6 255:259 714:718 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:36:24 21 Apr 2017 UTC: INFO: QC.py(180): Changed (16/718) 1:6 255:259 714:718 to QC_BAD because changed corrected salin implies changed speed 03:36:24 21 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 03:36:24 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.35 cm/s 03:36:24 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.38 cm/s 03:36:24 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:36:24 21 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (205/718) 135 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:36:24 21 Apr 2017 UTC: INFO: QC.py(180): Changed (2/718) 2 717 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:36:24 21 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (205/718) 135 137:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 03:36:24 21 Apr 2017 UTC: INFO: QC.py(180): Changed (2/718) 2 717 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 03:36:24 21 Apr 2017 UTC: INFO: QC.py(180): Changed (16/718) 1:6 255:259 714:718 to QC_BAD because changed salinity implies changed optode oxygen 03:36:24 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:36:24 21 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:36:24 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 03:36:25 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 610: Data set size for profile, binned and kkyy files reduced by 16 points, a 2.23% reduction 03:36:25 21 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.610 03:36:25 21 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:36:25 21 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:36:25 21 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:36:25 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 03:36:25 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 03:41:41 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 03:41:43 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 03:41:43 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 03:42:58 21 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:42:58 21 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:42:58 21 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:42:58 21 Apr 2017 UTC /home/sg626/p6260610.log /home/sg626/p6260610.eng /home/sg626/p6260610.asc /home/sg626/p6260610.pro /home/sg626/p6260610.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 03:42:58 21 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:42:58 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:42:58 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:42:58 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:42:58 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:42:58 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:42:58 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:42:58 21 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:42:58 21 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:42:58 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:42:58 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:42:58 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:42:58 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:42:58 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:42:58 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:42:58 21 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:42:58 21 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:42:58 21 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:42:58 21 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:42:58 21 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:42:58 21 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:42:58 21 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:42:58 21 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:42:58 21 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 03:42:58 21 Apr 2017 UTC 07:30:48 21 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 32153 07:30:48 21 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:34:33 21 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 32274 07:34:33 21 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:34:33 21 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:34:33 21 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:34:33 21 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:34:33 21 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170420213433 ] 07:34:33 21 Apr 2017 UTC: INFO: Base.py(1333): PID:32281 07:34:33 21 Apr 2017 UTC: INFO: Base.py(1375): Started processing 07:34:33 21 Apr 2017 UTC 07:34:33 21 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:34:35 21 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:34:35 21 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:34:35 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:34:35 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:611 calls_made:1 call_cycle:0 07:34:35 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:34:35 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:611 calls_made:1 call_cycle:0 07:34:35 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:34:35 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:611 calls_made:1 call_cycle:0 07:34:35 21 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:611 calls_made:1 call_cycle:0 2233.7720 -15800.2210 04/21/17 07:28:08 UTC) to sdrifter@soest.hawaii.edu 07:34:35 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:611 calls_made:1 call_cycle:0 07:34:35 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:34:35 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:611 calls_made:1 call_cycle:0 07:34:35 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:34:35 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:611 calls_made:1 call_cycle:0 07:34:35 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:34:35 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:611 calls_made:1 call_cycle:0 07:34:35 21 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:34:35 21 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:34:45 21 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:34:47 21 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:34:47 21 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:34:47 21 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:34:47 21 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:34:47 21 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:34:53 21 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0611lz 07:34:53 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0611lz.x00 07:34:53 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0611lz.x01 07:34:53 21 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0611lz.r in process_file_group 07:34:53 21 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260611.log 07:34:53 21 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:34:53 21 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0611dz 07:34:53 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0611dz.x00 07:34:53 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0611dz.x01 07:34:53 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0611dz.x02 07:34:53 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0611dz.x03 07:34:53 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0611dz.x04 07:34:53 21 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0611dz.r in process_file_group 07:34:53 21 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [611] 07:34:53 21 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [611] 07:34:54 21 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260611) for profiles 07:34:54 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 07:34:54 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/704) 702:704 to QC_BAD because CT out of water 07:34:54 21 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.130m) 07:34:54 21 Apr 2017 UTC: INFO: QC.py(365): Changed (6/704) 2 4 258 476 541 702 to QC_PROBABLY_BAD because raw temperature spikes 07:34:54 21 Apr 2017 UTC: INFO: QC.py(377): Changed (3/704) 702:704 to QC_BAD because raw salinity below bound 07:34:54 21 Apr 2017 UTC: INFO: QC.py(180): Changed (5/704) 2 4 258 476 541 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:34:54 21 Apr 2017 UTC: INFO: QC.py(365): Changed (6/704) 2 4 258 476 541 702 to QC_INTERPOLATED because temperature spikes 07:34:54 21 Apr 2017 UTC: INFO: QC.py(377): Changed (3/704) 702:704 to QC_BAD because salinity below bound 07:34:54 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/704) 256:260 to QC_BAD because slow apogee CT flow 07:34:54 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/704) 1:6 to QC_BAD because prior to dive start 07:34:54 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/704) 701 to QC_BAD because end of climb 07:34:54 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/704) 1:6 256:260 701:704 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:34:54 21 Apr 2017 UTC: INFO: QC.py(180): Changed (15/704) 1:6 256:260 701:704 to QC_BAD because changed corrected salin implies changed speed 07:34:54 21 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:34:54 21 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 611 interp_salinity data_points in_between 395 400 % suspect thermal-inertia points 396:399 07:34:54 21 Apr 2017 UTC: INFO: QC.py(180): Changed (2/704) 476 541 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 07:34:54 21 Apr 2017 UTC: INFO: QC.py(180): Changed (2/704) 476 541 to QC_INTERPOLATED because changed corrected temp implies changed speed 07:34:54 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.19 cm/s 07:34:54 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.52 cm/s 07:34:54 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:34:54 21 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (204/704) 139 140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:34:54 21 Apr 2017 UTC: INFO: QC.py(180): Changed (5/704) 2 4 476 541 702 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:34:54 21 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (204/704) 139 140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 07:34:55 21 Apr 2017 UTC: INFO: QC.py(180): Changed (5/704) 2 4 476 541 702 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:34:55 21 Apr 2017 UTC: INFO: QC.py(180): Changed (15/704) 1:6 256:260 701:704 to QC_BAD because changed salinity implies changed optode oxygen 07:34:55 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:34:55 21 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:34:55 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 07:34:55 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 611: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.13% reduction 07:34:55 21 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.611 07:34:55 21 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:34:55 21 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:34:55 21 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:34:55 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 07:34:55 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:40:10 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 07:40:12 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:40:12 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:41:27 21 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:41:27 21 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:41:27 21 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:41:27 21 Apr 2017 UTC /home/sg626/p6260611.log /home/sg626/p6260611.eng /home/sg626/p6260611.asc /home/sg626/p6260611.pro /home/sg626/p6260611.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:41:27 21 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:41:27 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:41:27 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:41:27 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:41:27 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:41:27 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:41:27 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:41:27 21 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:41:27 21 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:41:27 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:41:27 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:41:27 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:41:27 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:41:27 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:41:27 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:41:27 21 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:41:27 21 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:41:27 21 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:41:27 21 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:41:27 21 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:41:27 21 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:41:27 21 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:41:27 21 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:41:27 21 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 07:41:27 21 Apr 2017 UTC 11:18:40 21 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 7013 11:18:40 21 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 11:21:48 21 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 7292 11:21:48 21 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:21:48 21 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 11:21:48 21 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 11:21:48 21 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:21:48 21 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170421012148 ] 11:21:48 21 Apr 2017 UTC: INFO: Base.py(1333): PID:7299 11:21:48 21 Apr 2017 UTC: INFO: Base.py(1375): Started processing 11:21:48 21 Apr 2017 UTC 11:21:49 21 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 11:21:50 21 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 11:21:50 21 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:21:50 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:21:50 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:612 calls_made:1 call_cycle:0 11:21:50 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:21:50 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:612 calls_made:1 call_cycle:0 11:21:50 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:21:50 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:612 calls_made:1 call_cycle:0 11:21:50 21 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:612 calls_made:1 call_cycle:0 2234.7110 -15759.9840 04/21/17 11:16:18 UTC) to sdrifter@soest.hawaii.edu 11:21:50 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:612 calls_made:1 call_cycle:0 11:21:50 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:21:50 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:612 calls_made:1 call_cycle:0 11:21:50 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:21:50 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:612 calls_made:1 call_cycle:0 11:21:50 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:21:50 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:612 calls_made:1 call_cycle:0 11:21:50 21 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:21:50 21 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:22:00 21 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:22:02 21 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:22:02 21 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 11:22:02 21 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:22:02 21 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:22:02 21 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 11:22:08 21 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0612lz 11:22:08 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0612lz.x00 11:22:08 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0612lz.x01 11:22:08 21 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0612lz.r in process_file_group 11:22:08 21 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260612.log 11:22:08 21 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 11:22:08 21 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0612dz 11:22:08 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0612dz.x00 11:22:08 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0612dz.x01 11:22:08 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0612dz.x02 11:22:08 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0612dz.x03 11:22:08 21 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0612dz.r in process_file_group 11:22:08 21 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [612] 11:22:08 21 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [612] 11:22:09 21 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260612) for profiles 11:22:09 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 11:22:09 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/631) 629:631 to QC_BAD because CT out of water 11:22:09 21 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.163m) 11:22:09 21 Apr 2017 UTC: INFO: QC.py(365): Changed (1/631) 3 to QC_PROBABLY_BAD because raw temperature spikes 11:22:09 21 Apr 2017 UTC: INFO: QC.py(377): Changed (1/631) 630 to QC_BAD because raw salinity below bound 11:22:09 21 Apr 2017 UTC: INFO: QC.py(408): Changed (2/631) 102 103 to QC_PROBABLY_BAD because raw conductivity spikes 11:22:09 21 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <247 pt uncorrectable 968.3m SUSPECT weak conductivity anomaly n:-0.31 p:0.30> 11:22:09 21 Apr 2017 UTC: INFO: QC.py(180): Changed (1/631) 3 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 11:22:09 21 Apr 2017 UTC: INFO: QC.py(180): Changed (2/631) 102 103 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 11:22:09 21 Apr 2017 UTC: INFO: QC.py(180): Changed (2/631) 629 631 to QC_BAD because changed raw cond implies changed raw salinity 11:22:09 21 Apr 2017 UTC: INFO: QC.py(365): Changed (1/631) 3 to QC_INTERPOLATED because temperature spikes 11:22:09 21 Apr 2017 UTC: INFO: QC.py(377): Changed (1/631) 630 to QC_BAD because salinity below bound 11:22:09 21 Apr 2017 UTC: INFO: QC.py(408): Changed (2/631) 102 103 to QC_INTERPOLATED because conductivity spikes 11:22:09 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/631) 257:261 to QC_BAD because slow apogee CT flow 11:22:09 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/631) 1:6 to QC_BAD because prior to dive start 11:22:09 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/631) 1:6 257:261 629:631 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 11:22:09 21 Apr 2017 UTC: INFO: QC.py(180): Changed (14/631) 1:6 257:261 629:631 to QC_BAD because changed corrected salin implies changed speed 11:22:09 21 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 11:22:09 21 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 612 interp_salinity data_points in_between 123 153 % suspect thermal-inertia points 135 11:22:09 21 Apr 2017 UTC: INFO: QC.py(180): Changed (2/631) 102 103 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 11:22:09 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.48 cm/s 11:22:09 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.38 cm/s 11:22:09 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 11:22:09 21 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (203/631) 139 140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 11:22:09 21 Apr 2017 UTC: INFO: QC.py(180): Changed (1/631) 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 11:22:09 21 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (203/631) 139 140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 11:22:09 21 Apr 2017 UTC: INFO: QC.py(180): Changed (1/631) 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 11:22:09 21 Apr 2017 UTC: INFO: QC.py(180): Changed (14/631) 1:6 257:261 629:631 to QC_BAD because changed salinity implies changed optode oxygen 11:22:09 21 Apr 2017 UTC: INFO: QC.py(180): Changed (2/631) 102 103 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 11:22:09 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 11:22:09 21 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 11:22:09 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 11:22:10 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 612: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.22% reduction 11:22:10 21 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.612 11:22:10 21 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:22:10 21 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:22:10 21 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:22:10 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 11:22:10 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 11:27:30 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 11:27:32 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 11:27:32 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 11:28:47 21 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:28:47 21 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:28:47 21 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:28:47 21 Apr 2017 UTC /home/sg626/p6260612.log /home/sg626/p6260612.eng /home/sg626/p6260612.asc /home/sg626/p6260612.pro /home/sg626/p6260612.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 11:28:47 21 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:28:47 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:28:47 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:28:47 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:28:47 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:28:47 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:28:47 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:28:47 21 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:28:47 21 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:28:47 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:28:47 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:28:47 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:28:47 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:28:47 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:28:47 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:28:47 21 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:28:47 21 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 11:28:47 21 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 11:28:47 21 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 11:28:47 21 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 11:28:47 21 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:28:47 21 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:28:47 21 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:28:47 21 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 11:28:47 21 Apr 2017 UTC 15:20:56 21 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 16461 15:20:56 21 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 15:22:55 21 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 16563 15:22:55 21 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 15:22:55 21 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 15:22:55 21 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 15:22:55 21 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 15:22:55 21 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170421052255 ] 15:22:55 21 Apr 2017 UTC: INFO: Base.py(1333): PID:16571 15:22:55 21 Apr 2017 UTC: INFO: Base.py(1375): Started processing 15:22:55 21 Apr 2017 UTC 15:22:55 21 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 15:22:57 21 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 15:22:57 21 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 15:22:57 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:22:57 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:613 calls_made:2 call_cycle:0 15:22:57 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:22:57 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:613 calls_made:2 call_cycle:0 15:22:57 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:22:57 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:613 calls_made:2 call_cycle:0 15:22:57 21 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:613 calls_made:2 call_cycle:0 2233.0030 -15801.0350 04/21/17 15:15:10 UTC) to sdrifter@soest.hawaii.edu 15:22:57 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:613 calls_made:2 call_cycle:0 15:22:57 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:22:57 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:613 calls_made:2 call_cycle:0 15:22:57 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:22:57 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:613 calls_made:2 call_cycle:0 15:22:57 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:22:57 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:613 calls_made:2 call_cycle:0 15:22:57 21 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:22:57 21 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 15:23:07 21 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 15:23:09 21 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 15:23:09 21 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 15:23:09 21 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 15:23:09 21 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 15:23:09 21 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 15:23:15 21 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 15:23:15 21 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 15:23:15 21 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 15:23:15 21 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.613 15:23:15 21 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 15:23:15 21 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 15:23:15 21 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 15:23:15 21 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 15:23:15 21 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 15:23:15 21 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 15:23:15 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:23:15 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:23:15 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:23:15 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:23:15 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:23:15 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:23:15 21 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:23:15 21 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 15:23:15 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:23:15 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:23:15 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:23:15 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:23:15 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:23:15 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:23:15 21 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:23:15 21 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 15:23:15 21 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 15:23:15 21 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 15:23:15 21 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 15:23:15 21 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 15:23:15 21 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 15:23:15 21 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 15:23:15 21 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 15:23:15 21 Apr 2017 UTC 15:27:45 21 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 16854 15:27:45 21 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 15:30:18 21 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 17103 15:30:18 21 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 15:30:18 21 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 15:30:18 21 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 15:30:18 21 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 15:30:18 21 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170421053018 ] 15:30:18 21 Apr 2017 UTC: INFO: Base.py(1333): PID:17112 15:30:18 21 Apr 2017 UTC: INFO: Base.py(1375): Started processing 15:30:18 21 Apr 2017 UTC 15:30:18 21 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 15:30:20 21 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 15:30:20 21 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 15:30:20 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:30:20 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:613 calls_made:4 call_cycle:0 15:30:20 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:30:20 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:613 calls_made:4 call_cycle:0 15:30:20 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:30:20 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:613 calls_made:4 call_cycle:0 15:30:20 21 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:613 calls_made:4 call_cycle:0 2233.0030 -15801.0350 04/21/17 15:15:10 UTC) to sdrifter@soest.hawaii.edu 15:30:20 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:613 calls_made:4 call_cycle:0 15:30:20 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:30:20 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:613 calls_made:4 call_cycle:0 15:30:20 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:30:20 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:613 calls_made:4 call_cycle:0 15:30:20 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:30:20 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:613 calls_made:4 call_cycle:0 15:30:20 21 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:30:20 21 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 15:30:30 21 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 15:30:32 21 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 15:30:32 21 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 15:30:32 21 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 15:30:32 21 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 15:30:32 21 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 15:30:38 21 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0613lz 15:30:38 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0613lz.x00 15:30:38 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0613lz.x01 15:30:38 21 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0613lz.r in process_file_group 15:30:38 21 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260613.log 15:30:38 21 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 15:30:38 21 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0613dz 15:30:38 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0613dz.x00 15:30:38 21 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0613dz.r in process_file_group 15:30:38 21 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0613dz.r - expected 0x3145678559, generated 0x8daa1a91 15:30:38 21 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0613dz.r - expected 0xf1f97a7c, generated 0x64 15:30:38 21 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0613dz.r - skipping 15:30:38 21 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0613dz - skipping 15:30:38 21 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 15:30:38 21 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [613] 15:30:38 21 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 15:30:38 21 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.613 15:30:38 21 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 15:30:38 21 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 15:30:38 21 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 15:30:38 21 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 15:30:38 21 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 15:30:38 21 Apr 2017 UTC: ERROR: Base.py(1960): Dive [613] failed to process completely. The following files were not processed completely: /home/sg626/sg0613dz.r Glider logout not seen - retransmissions from glider possible Consult baselog_170421053018 for details. 15:30:38 21 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 15:30:38 21 Apr 2017 UTC /home/sg626/p6260613.log 15:30:38 21 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 15:30:38 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:30:38 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:30:38 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:30:38 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:30:38 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:30:38 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:30:38 21 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:30:38 21 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 15:30:38 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:30:38 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:30:38 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:30:38 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:30:38 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:30:38 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:30:38 21 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:30:38 21 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 15:30:38 21 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 15:30:38 21 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 15:30:38 21 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 15:30:38 21 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 15:30:38 21 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 15:30:38 21 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 15:30:38 21 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 15:30:38 21 Apr 2017 UTC 19:32:13 21 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 26763 19:32:13 21 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:37:18 21 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 26918 19:37:18 21 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:37:18 21 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:37:18 21 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:37:18 21 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:37:18 21 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170421093717 ] 19:37:18 21 Apr 2017 UTC: INFO: Base.py(1333): PID:26926 19:37:18 21 Apr 2017 UTC: INFO: Base.py(1375): Started processing 19:37:18 21 Apr 2017 UTC 19:37:18 21 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:37:19 21 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:37:19 21 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:37:19 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:37:19 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:614 calls_made:1 call_cycle:0 19:37:19 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:37:19 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:614 calls_made:1 call_cycle:0 19:37:19 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:37:19 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:614 calls_made:1 call_cycle:0 19:37:19 21 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:614 calls_made:1 call_cycle:0 2233.3620 -15800.7780 04/21/17 19:29:07 UTC) to sdrifter@soest.hawaii.edu 19:37:19 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:614 calls_made:1 call_cycle:0 19:37:19 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:37:19 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:614 calls_made:1 call_cycle:0 19:37:19 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:37:19 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:614 calls_made:1 call_cycle:0 19:37:19 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:37:19 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:614 calls_made:1 call_cycle:0 19:37:19 21 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:37:19 21 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:37:29 21 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:37:31 21 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:37:31 21 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:37:31 21 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:37:31 21 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:37:31 21 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:37:37 21 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:37:37 21 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0613dz 19:37:37 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0613dz.x00 19:37:37 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0613dz.x01 19:37:37 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0613dz.x02 19:37:37 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0613dz.x03 19:37:37 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0613dz.x04 19:37:37 21 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0613dz.r in process_file_group 19:37:37 21 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0614lz 19:37:37 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0614lz.x00 19:37:37 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0614lz.x01 19:37:37 21 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0614lz.r in process_file_group 19:37:37 21 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260614.log 19:37:37 21 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:37:37 21 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0614dz 19:37:37 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0614dz.x00 19:37:37 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0614dz.x01 19:37:37 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0614dz.x02 19:37:37 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0614dz.x03 19:37:37 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0614dz.x04 19:37:37 21 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0614dz.r in process_file_group 19:37:38 21 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [613, 614] 19:37:38 21 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [613, 614] 19:37:38 21 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260613) for profiles 19:37:38 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 19:37:39 21 Apr 2017 UTC: INFO: QC.py(365): Changed (5/700) 2:5 572 to QC_PROBABLY_BAD because raw temperature spikes 19:37:39 21 Apr 2017 UTC: INFO: QC.py(180): Changed (5/700) 2:5 572 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:37:39 21 Apr 2017 UTC: INFO: QC.py(365): Changed (5/700) 2:5 572 to QC_INTERPOLATED because temperature spikes 19:37:39 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/700) 260:264 to QC_BAD because slow apogee CT flow 19:37:39 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/700) 1:6 to QC_BAD because prior to dive start 19:37:39 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/700) 699 700 to QC_BAD because end of climb 19:37:39 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/700) 1:6 260:264 699 700 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:37:39 21 Apr 2017 UTC: INFO: QC.py(180): Changed (13/700) 1:6 260:264 699 700 to QC_BAD because changed corrected salin implies changed speed 19:37:39 21 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:37:39 21 Apr 2017 UTC: INFO: QC.py(180): Changed (1/700) 572 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 19:37:39 21 Apr 2017 UTC: INFO: QC.py(180): Changed (1/700) 572 to QC_INTERPOLATED because changed corrected temp implies changed speed 19:37:39 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.66 cm/s 19:37:39 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.43 cm/s 19:37:39 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:37:39 21 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (208/700) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:37:39 21 Apr 2017 UTC: INFO: QC.py(180): Changed (5/700) 2:5 572 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 19:37:39 21 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (208/700) 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 19:37:39 21 Apr 2017 UTC: INFO: QC.py(180): Changed (5/700) 2:5 572 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 19:37:39 21 Apr 2017 UTC: INFO: QC.py(180): Changed (13/700) 1:6 260:264 699 700 to QC_BAD because changed salinity implies changed optode oxygen 19:37:39 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:37:39 21 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:37:39 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 19:37:40 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 613: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.86% reduction 19:37:40 21 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260614) for profiles 19:37:40 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 19:37:40 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/722) 721 to QC_BAD because CT out of water 19:37:40 21 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.084m) 19:37:40 21 Apr 2017 UTC: INFO: QC.py(365): Changed (3/722) 2 55 721 to QC_PROBABLY_BAD because raw temperature spikes 19:37:40 21 Apr 2017 UTC: INFO: QC.py(408): Changed (1/722) 55 to QC_PROBABLY_BAD because raw conductivity spikes 19:37:40 21 Apr 2017 UTC: INFO: QC.py(180): Changed (3/722) 2 55 721 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:37:40 21 Apr 2017 UTC: INFO: QC.py(180): Changed (1/722) 721 to QC_BAD because changed raw cond implies changed raw salinity 19:37:40 21 Apr 2017 UTC: INFO: QC.py(365): Changed (3/722) 2 55 721 to QC_INTERPOLATED because temperature spikes 19:37:40 21 Apr 2017 UTC: INFO: QC.py(408): Changed (1/722) 55 to QC_INTERPOLATED because conductivity spikes 19:37:40 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/722) 272:276 to QC_BAD because slow apogee CT flow 19:37:40 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/722) 1:6 to QC_BAD because prior to dive start 19:37:40 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/722) 720 722 to QC_BAD because end of climb 19:37:40 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/722) 1:6 272:276 720:722 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:37:40 21 Apr 2017 UTC: INFO: QC.py(180): Changed (14/722) 1:6 272:276 720:722 to QC_BAD because changed corrected salin implies changed speed 19:37:41 21 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:37:41 21 Apr 2017 UTC: INFO: QC.py(180): Changed (1/722) 55 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 19:37:41 21 Apr 2017 UTC: INFO: QC.py(180): Changed (1/722) 55 to QC_INTERPOLATED because changed corrected temp implies changed speed 19:37:41 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.33 cm/s 19:37:41 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.17 cm/s 19:37:41 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:37:41 21 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (210/722) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:37:41 21 Apr 2017 UTC: INFO: QC.py(180): Changed (3/722) 2 55 721 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 19:37:41 21 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (210/722) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 19:37:41 21 Apr 2017 UTC: INFO: QC.py(180): Changed (3/722) 2 55 721 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 19:37:41 21 Apr 2017 UTC: INFO: QC.py(180): Changed (14/722) 1:6 272:276 720:722 to QC_BAD because changed salinity implies changed optode oxygen 19:37:41 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:37:41 21 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 19:37:41 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 614: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.94% reduction 19:37:41 21 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.614 19:37:41 21 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:37:41 21 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:37:41 21 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:37:41 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 19:37:41 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 19:42:59 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 19:43:01 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 19:43:01 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 19:44:17 21 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:44:17 21 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:44:17 21 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:44:17 21 Apr 2017 UTC /home/sg626/p6260613.eng /home/sg626/p6260614.log /home/sg626/p6260614.eng /home/sg626/p6260613.asc /home/sg626/p6260614.asc /home/sg626/p6260613.pro /home/sg626/p6260613.nc /home/sg626/p6260614.pro /home/sg626/p6260614.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 19:44:17 21 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:44:17 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:44:17 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:44:17 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:44:17 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:44:17 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:44:17 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:44:17 21 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:44:17 21 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:44:17 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:44:17 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:44:17 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:44:17 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:44:17 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:44:17 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:44:17 21 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:44:17 21 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:44:17 21 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:44:17 21 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:44:17 21 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:44:17 21 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:44:17 21 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:44:17 21 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:44:17 21 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 19:44:17 21 Apr 2017 UTC 23:36:55 21 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 2085 23:36:55 21 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 23:40:14 21 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 2443 23:40:14 21 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:40:14 21 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:40:14 21 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:40:14 21 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:40:14 21 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170421134013 ] 23:40:14 21 Apr 2017 UTC: INFO: Base.py(1333): PID:2450 23:40:14 21 Apr 2017 UTC: INFO: Base.py(1375): Started processing 23:40:14 21 Apr 2017 UTC 23:40:14 21 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:40:16 21 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:40:16 21 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:40:16 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:40:16 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:615 calls_made:1 call_cycle:0 23:40:16 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:40:16 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:615 calls_made:1 call_cycle:0 23:40:16 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:40:16 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:615 calls_made:1 call_cycle:0 23:40:16 21 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:615 calls_made:1 call_cycle:0 2233.8580 -15800.4790 04/21/17 23:34:27 UTC) to sdrifter@soest.hawaii.edu 23:40:16 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:615 calls_made:1 call_cycle:0 23:40:16 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:40:16 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:615 calls_made:1 call_cycle:0 23:40:16 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:40:16 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:615 calls_made:1 call_cycle:0 23:40:16 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:40:16 21 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:615 calls_made:1 call_cycle:0 23:40:16 21 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:40:16 21 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:40:26 21 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:40:28 21 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:40:28 21 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:40:28 21 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:40:28 21 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:40:28 21 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:40:34 21 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0615lz 23:40:34 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0615lz.x00 23:40:34 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0615lz.x01 23:40:34 21 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0615lz.r in process_file_group 23:40:34 21 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260615.log 23:40:34 21 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:40:34 21 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0615dz 23:40:34 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0615dz.x00 23:40:34 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0615dz.x01 23:40:34 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0615dz.x02 23:40:34 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0615dz.x03 23:40:34 21 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0615dz.x04 23:40:34 21 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0615dz.r in process_file_group 23:40:34 21 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [615] 23:40:34 21 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [615] 23:40:34 21 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260615) for profiles 23:40:34 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 23:40:34 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/717) 715:717 to QC_BAD because CT out of water 23:40:34 21 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.102m) 23:40:34 21 Apr 2017 UTC: INFO: QC.py(365): Changed (4/717) 2 3 715 716 to QC_PROBABLY_BAD because raw temperature spikes 23:40:34 21 Apr 2017 UTC: INFO: QC.py(180): Changed (4/717) 2 3 715 716 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 23:40:34 21 Apr 2017 UTC: INFO: QC.py(180): Changed (3/717) 715:717 to QC_BAD because changed raw cond implies changed raw salinity 23:40:34 21 Apr 2017 UTC: INFO: QC.py(365): Changed (4/717) 2 3 715 716 to QC_INTERPOLATED because temperature spikes 23:40:34 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/717) 274:278 to QC_BAD because slow apogee CT flow 23:40:34 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/717) 1:7 to QC_BAD because prior to dive start 23:40:34 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/717) 714 to QC_BAD because end of climb 23:40:34 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/717) 1:7 274:278 714:717 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 23:40:34 21 Apr 2017 UTC: INFO: QC.py(180): Changed (16/717) 1:7 274:278 714:717 to QC_BAD because changed corrected salin implies changed speed 23:40:35 21 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 23:40:35 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.51 cm/s 23:40:35 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.17 cm/s 23:40:35 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 23:40:35 21 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (210/717) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 23:40:35 21 Apr 2017 UTC: INFO: QC.py(180): Changed (4/717) 2 3 715 716 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 23:40:35 21 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (210/717) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 23:40:35 21 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/717) 714 715 to QC_BAD because bad aa4330 oyxgen 23:40:35 21 Apr 2017 UTC: INFO: QC.py(180): Changed (3/717) 2 3 716 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 23:40:35 21 Apr 2017 UTC: INFO: QC.py(180): Changed (14/717) 1:7 274:278 716 717 to QC_BAD because changed salinity implies changed optode oxygen 23:40:35 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 23:40:35 21 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 23:40:35 21 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 23:40:36 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 615: Data set size for profile, binned and kkyy files reduced by 16 points, a 2.23% reduction 23:40:36 21 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.615 23:40:36 21 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:40:36 21 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:40:36 21 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:40:36 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 23:40:36 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 23:45:55 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 23:45:57 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 23:45:57 21 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 23:47:13 21 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:47:13 21 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:47:13 21 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:47:13 21 Apr 2017 UTC /home/sg626/p6260615.log /home/sg626/p6260615.eng /home/sg626/p6260615.asc /home/sg626/p6260615.pro /home/sg626/p6260615.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 23:47:13 21 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:47:13 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:47:13 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:47:13 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:47:13 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:47:13 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:47:13 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:47:13 21 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:47:13 21 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:47:13 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:47:13 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:47:13 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:47:13 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:47:13 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:47:13 21 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:47:13 21 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:47:13 21 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:47:13 21 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:47:13 21 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:47:13 21 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:47:13 21 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:47:13 21 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:47:13 21 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:47:13 21 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 23:47:13 21 Apr 2017 UTC 03:38:28 22 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 10777 03:38:28 22 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:41:54 22 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 11056 03:41:54 22 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:41:54 22 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:41:54 22 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:41:54 22 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:41:54 22 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170421174153 ] 03:41:54 22 Apr 2017 UTC: INFO: Base.py(1333): PID:11064 03:41:54 22 Apr 2017 UTC: INFO: Base.py(1375): Started processing 03:41:54 22 Apr 2017 UTC 03:41:54 22 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:41:56 22 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:41:56 22 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:41:56 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:41:56 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:616 calls_made:2 call_cycle:0 03:41:56 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:41:56 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:616 calls_made:2 call_cycle:0 03:41:56 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:41:56 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:616 calls_made:2 call_cycle:0 03:41:56 22 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:616 calls_made:2 call_cycle:0 2233.8790 -15800.0560 04/22/17 03:33:30 UTC) to sdrifter@soest.hawaii.edu 03:41:56 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:616 calls_made:2 call_cycle:0 03:41:56 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:41:56 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:616 calls_made:2 call_cycle:0 03:41:56 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:41:56 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:616 calls_made:2 call_cycle:0 03:41:56 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:41:56 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:616 calls_made:2 call_cycle:0 03:41:56 22 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:41:56 22 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:42:06 22 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:42:07 22 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:42:07 22 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:42:07 22 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:42:08 22 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:42:08 22 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:42:13 22 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0616lz 03:42:13 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0616lz.x00 03:42:13 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0616lz.x01 03:42:13 22 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0616lz.r in process_file_group 03:42:13 22 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260616.log 03:42:13 22 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:42:13 22 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0616dz 03:42:13 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0616dz.x00 03:42:13 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0616dz.x01 03:42:13 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0616dz.x02 03:42:13 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0616dz.x03 03:42:13 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0616dz.x04 03:42:13 22 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0616dz.r in process_file_group 03:42:14 22 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [616] 03:42:14 22 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [616] 03:42:14 22 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260616) for profiles 03:42:14 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 03:42:14 22 Apr 2017 UTC: INFO: QC.py(365): Changed (2/699) 3 255 to QC_PROBABLY_BAD because raw temperature spikes 03:42:14 22 Apr 2017 UTC: INFO: QC.py(180): Changed (2/699) 3 255 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 03:42:14 22 Apr 2017 UTC: INFO: QC.py(365): Changed (2/699) 3 255 to QC_INTERPOLATED because temperature spikes 03:42:14 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/699) 253:257 to QC_BAD because slow apogee CT flow 03:42:14 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/699) 1:6 to QC_BAD because prior to dive start 03:42:14 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/699) 1:6 253:257 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:42:14 22 Apr 2017 UTC: INFO: QC.py(180): Changed (11/699) 1:6 253:257 to QC_BAD because changed corrected salin implies changed speed 03:42:14 22 Apr 2017 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 699 03:42:15 22 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 03:42:15 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.79 cm/s 03:42:15 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.54 cm/s 03:42:15 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:42:15 22 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (203/699) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:42:15 22 Apr 2017 UTC: INFO: QC.py(180): Changed (1/699) 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:42:15 22 Apr 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/699) 699 to QC_BAD because slow flow in SBE43 03:42:15 22 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (203/699) 138:140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 03:42:15 22 Apr 2017 UTC: INFO: QC.py(180): Changed (1/699) 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 03:42:15 22 Apr 2017 UTC: INFO: QC.py(180): Changed (11/699) 1:6 253:257 to QC_BAD because changed salinity implies changed optode oxygen 03:42:15 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:42:15 22 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:42:15 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 03:42:15 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 616: Data set size for profile, binned and kkyy files reduced by 11 points, a 1.57% reduction 03:42:15 22 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.616 03:42:15 22 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:42:15 22 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:42:15 22 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:42:16 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 03:42:16 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 03:47:36 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 03:47:38 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 03:47:38 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 03:48:56 22 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:48:56 22 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:48:56 22 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:48:56 22 Apr 2017 UTC /home/sg626/p6260616.log /home/sg626/p6260616.eng /home/sg626/p6260616.asc /home/sg626/p6260616.pro /home/sg626/p6260616.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 03:48:56 22 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:48:56 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:48:56 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:48:56 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:48:56 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:48:56 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:48:56 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:48:56 22 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:48:56 22 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:48:56 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:48:56 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:48:56 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:48:56 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:48:56 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:48:56 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:48:56 22 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:48:56 22 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:48:56 22 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:48:56 22 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:48:56 22 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:48:56 22 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:48:56 22 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:48:56 22 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:48:56 22 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 03:48:56 22 Apr 2017 UTC 07:31:05 22 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 18368 07:31:05 22 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:34:19 22 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 18494 07:34:19 22 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:34:19 22 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:34:19 22 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:34:19 22 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:34:19 22 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170421213418 ] 07:34:19 22 Apr 2017 UTC: INFO: Base.py(1333): PID:18501 07:34:19 22 Apr 2017 UTC: INFO: Base.py(1375): Started processing 07:34:19 22 Apr 2017 UTC 07:34:19 22 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:34:20 22 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:34:20 22 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:34:20 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:34:20 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:617 calls_made:1 call_cycle:0 07:34:20 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:34:20 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:617 calls_made:1 call_cycle:0 07:34:20 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:34:20 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:617 calls_made:1 call_cycle:0 07:34:20 22 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:617 calls_made:1 call_cycle:0 2234.4080 -15800.3180 04/22/17 07:28:38 UTC) to sdrifter@soest.hawaii.edu 07:34:21 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:617 calls_made:1 call_cycle:0 07:34:21 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:34:21 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:617 calls_made:1 call_cycle:0 07:34:21 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:34:21 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:617 calls_made:1 call_cycle:0 07:34:21 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:34:21 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:617 calls_made:1 call_cycle:0 07:34:21 22 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:34:21 22 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:34:31 22 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:34:33 22 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:34:33 22 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:34:33 22 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:34:33 22 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:34:33 22 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:34:38 22 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0617lz 07:34:38 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0617lz.x00 07:34:38 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0617lz.x01 07:34:38 22 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0617lz.r in process_file_group 07:34:38 22 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260617.log 07:34:38 22 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:34:38 22 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0617dz 07:34:38 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0617dz.x00 07:34:38 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0617dz.x01 07:34:38 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0617dz.x02 07:34:38 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0617dz.x03 07:34:38 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0617dz.x04 07:34:38 22 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0617dz.r in process_file_group 07:34:39 22 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [617] 07:34:39 22 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [617] 07:34:39 22 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260617) for profiles 07:34:39 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 07:34:39 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/701) 698 700 701 to QC_BAD because CT out of water 07:34:39 22 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.208m) 07:34:39 22 Apr 2017 UTC: INFO: QC.py(365): Changed (5/701) 2 3 697 699 700 to QC_PROBABLY_BAD because raw temperature spikes 07:34:39 22 Apr 2017 UTC: INFO: QC.py(377): Changed (2/701) 700 701 to QC_BAD because raw salinity below bound 07:34:39 22 Apr 2017 UTC: INFO: QC.py(408): Changed (1/701) 269 to QC_PROBABLY_BAD because raw conductivity spikes 07:34:39 22 Apr 2017 UTC: INFO: QC.py(180): Changed (4/701) 2 3 697 699 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:34:39 22 Apr 2017 UTC: INFO: QC.py(180): Changed (1/701) 269 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 07:34:39 22 Apr 2017 UTC: INFO: QC.py(180): Changed (1/701) 698 to QC_BAD because changed raw cond implies changed raw salinity 07:34:39 22 Apr 2017 UTC: INFO: QC.py(365): Changed (5/701) 2 3 697 699 700 to QC_INTERPOLATED because temperature spikes 07:34:39 22 Apr 2017 UTC: INFO: QC.py(377): Changed (2/701) 700 701 to QC_BAD because salinity below bound 07:34:39 22 Apr 2017 UTC: INFO: QC.py(408): Changed (1/701) 269 to QC_INTERPOLATED because conductivity spikes 07:34:39 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/701) 267:271 to QC_BAD because slow apogee CT flow 07:34:39 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/701) 1:6 to QC_BAD because prior to dive start 07:34:39 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/701) 697 699 to QC_BAD because end of climb 07:34:39 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/701) 1:6 267:271 697:701 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:34:39 22 Apr 2017 UTC: INFO: QC.py(180): Changed (16/701) 1:6 267:271 697:701 to QC_BAD because changed corrected salin implies changed speed 07:34:40 22 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:34:40 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.80 cm/s 07:34:40 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.19 cm/s 07:34:40 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:34:40 22 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (197/701) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:34:40 22 Apr 2017 UTC: INFO: QC.py(180): Changed (5/701) 2 3 697 699 700 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:34:40 22 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (197/701) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 07:34:40 22 Apr 2017 UTC: INFO: QC.py(180): Changed (5/701) 2 3 697 699 700 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:34:40 22 Apr 2017 UTC: INFO: QC.py(180): Changed (16/701) 1:6 267:271 697:701 to QC_BAD because changed salinity implies changed optode oxygen 07:34:40 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:34:40 22 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:34:40 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 07:34:41 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 617: Data set size for profile, binned and kkyy files reduced by 16 points, a 2.28% reduction 07:34:41 22 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.617 07:34:41 22 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:34:41 22 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:34:41 22 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:34:41 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 07:34:41 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:39:58 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 07:40:00 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:40:00 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:41:17 22 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:41:17 22 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:41:17 22 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:41:17 22 Apr 2017 UTC /home/sg626/p6260617.log /home/sg626/p6260617.eng /home/sg626/p6260617.asc /home/sg626/p6260617.pro /home/sg626/p6260617.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:41:17 22 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:41:17 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:41:17 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:41:17 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:41:17 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:41:17 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:41:17 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:41:17 22 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:41:17 22 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:41:17 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:41:17 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:41:17 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:41:17 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:41:17 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:41:17 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:41:17 22 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:41:17 22 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:41:17 22 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:41:17 22 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:41:17 22 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:41:17 22 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:41:17 22 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:41:17 22 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:41:17 22 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 07:41:17 22 Apr 2017 UTC 11:31:27 22 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 26260 11:31:27 22 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 11:35:01 22 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 26395 11:35:01 22 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:35:01 22 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 11:35:01 22 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 11:35:01 22 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:35:01 22 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170422013500 ] 11:35:01 22 Apr 2017 UTC: INFO: Base.py(1333): PID:26402 11:35:01 22 Apr 2017 UTC: INFO: Base.py(1375): Started processing 11:35:01 22 Apr 2017 UTC 11:35:01 22 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 11:35:02 22 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 11:35:02 22 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:35:02 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:35:02 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:618 calls_made:2 call_cycle:0 11:35:02 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:35:02 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:618 calls_made:2 call_cycle:0 11:35:02 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:35:02 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:618 calls_made:2 call_cycle:0 11:35:02 22 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:618 calls_made:2 call_cycle:0 2233.0980 -15800.5730 04/22/17 11:26:30 UTC) to sdrifter@soest.hawaii.edu 11:35:02 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:618 calls_made:2 call_cycle:0 11:35:02 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:35:02 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:618 calls_made:2 call_cycle:0 11:35:02 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:35:02 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:618 calls_made:2 call_cycle:0 11:35:02 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:35:02 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:618 calls_made:2 call_cycle:0 11:35:02 22 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:35:02 22 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:35:12 22 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:35:14 22 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:35:14 22 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 11:35:14 22 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:35:14 22 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:35:14 22 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 11:35:20 22 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0618lz 11:35:20 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0618lz.x00 11:35:20 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0618lz.x01 11:35:20 22 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0618lz.r in process_file_group 11:35:20 22 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260618.log 11:35:20 22 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 11:35:20 22 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0618dz 11:35:20 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0618dz.x00 11:35:20 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0618dz.x01 11:35:20 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0618dz.x02 11:35:20 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0618dz.x03 11:35:20 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0618dz.x04 11:35:20 22 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0618dz.r in process_file_group 11:35:21 22 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [618] 11:35:21 22 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [618] 11:35:21 22 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260618) for profiles 11:35:21 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 11:35:21 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/684) 682:684 to QC_BAD because CT out of water 11:35:21 22 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.188m) 11:35:21 22 Apr 2017 UTC: INFO: QC.py(365): Changed (3/684) 2 3 520 to QC_PROBABLY_BAD because raw temperature spikes 11:35:21 22 Apr 2017 UTC: INFO: QC.py(377): Changed (1/684) 684 to QC_BAD because raw salinity below bound 11:35:21 22 Apr 2017 UTC: INFO: QC.py(408): Changed (1/684) 520 to QC_PROBABLY_BAD because raw conductivity spikes 11:35:21 22 Apr 2017 UTC: INFO: QC.py(180): Changed (3/684) 2 3 520 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 11:35:21 22 Apr 2017 UTC: INFO: QC.py(180): Changed (2/684) 682 683 to QC_BAD because changed raw cond implies changed raw salinity 11:35:21 22 Apr 2017 UTC: INFO: QC.py(365): Changed (3/684) 2 3 520 to QC_INTERPOLATED because temperature spikes 11:35:21 22 Apr 2017 UTC: INFO: QC.py(377): Changed (1/684) 684 to QC_BAD because salinity below bound 11:35:21 22 Apr 2017 UTC: INFO: QC.py(408): Changed (1/684) 520 to QC_INTERPOLATED because conductivity spikes 11:35:21 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/684) 263:267 to QC_BAD because slow apogee CT flow 11:35:21 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/684) 1:6 to QC_BAD because prior to dive start 11:35:21 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/684) 1:6 263:267 682:684 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 11:35:21 22 Apr 2017 UTC: INFO: QC.py(180): Changed (14/684) 1:6 263:267 682:684 to QC_BAD because changed corrected salin implies changed speed 11:35:22 22 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 11:35:22 22 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 618 interp_salinity data_points in_between 416 424 % suspect thermal-inertia points 418:420 11:35:22 22 Apr 2017 UTC: INFO: QC.py(180): Changed (1/684) 520 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 11:35:22 22 Apr 2017 UTC: INFO: QC.py(180): Changed (1/684) 520 to QC_INTERPOLATED because changed corrected temp implies changed speed 11:35:22 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.49 cm/s 11:35:22 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.62 cm/s 11:35:22 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 11:35:22 22 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (209/684) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 11:35:22 22 Apr 2017 UTC: INFO: QC.py(180): Changed (3/684) 2 3 520 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 11:35:22 22 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (209/684) 144 145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 11:35:22 22 Apr 2017 UTC: INFO: QC.py(180): Changed (3/684) 2 3 520 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 11:35:22 22 Apr 2017 UTC: INFO: QC.py(180): Changed (14/684) 1:6 263:267 682:684 to QC_BAD because changed salinity implies changed optode oxygen 11:35:22 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 11:35:22 22 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 11:35:22 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 11:35:22 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 618: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.05% reduction 11:35:22 22 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.618 11:35:22 22 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:35:22 22 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:35:22 22 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:35:23 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 11:35:23 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 11:40:44 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 11:40:46 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 11:40:46 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 11:42:04 22 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:42:04 22 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:42:04 22 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:42:04 22 Apr 2017 UTC /home/sg626/p6260618.log /home/sg626/p6260618.eng /home/sg626/p6260618.asc /home/sg626/p6260618.pro /home/sg626/p6260618.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 11:42:04 22 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:42:04 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:42:04 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:42:04 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:42:04 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:42:04 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:42:04 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:42:04 22 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:42:04 22 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:42:04 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:42:04 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:42:04 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:42:04 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:42:04 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:42:04 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:42:04 22 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:42:04 22 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 11:42:04 22 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 11:42:04 22 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 11:42:04 22 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 11:42:04 22 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:42:04 22 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:42:04 22 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:42:04 22 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 11:42:04 22 Apr 2017 UTC 15:33:29 22 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 1326 15:33:29 22 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 15:34:38 22 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 1426 15:34:38 22 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 15:34:38 22 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 15:34:38 22 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 15:34:38 22 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 15:34:38 22 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170422053437 ] 15:34:38 22 Apr 2017 UTC: INFO: Base.py(1333): PID:1437 15:34:38 22 Apr 2017 UTC: INFO: Base.py(1375): Started processing 15:34:38 22 Apr 2017 UTC 15:34:38 22 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 15:34:40 22 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 15:34:40 22 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 15:34:40 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:34:40 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:619 calls_made:1 call_cycle:0 15:34:40 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:34:40 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:619 calls_made:1 call_cycle:0 15:34:40 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:34:40 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:619 calls_made:1 call_cycle:0 15:34:40 22 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:619 calls_made:1 call_cycle:0 2234.0720 -15800.5310 04/22/17 15:31:01 UTC) to sdrifter@soest.hawaii.edu 15:34:40 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:619 calls_made:1 call_cycle:0 15:34:40 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:34:40 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:619 calls_made:1 call_cycle:0 15:34:40 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:34:40 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:619 calls_made:1 call_cycle:0 15:34:40 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:34:40 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:619 calls_made:1 call_cycle:0 15:34:40 22 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:34:40 22 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 15:34:50 22 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 15:34:52 22 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 15:34:52 22 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 15:34:52 22 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 15:34:52 22 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 15:34:52 22 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 15:34:58 22 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 15:34:58 22 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 15:34:58 22 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 15:34:58 22 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.619 15:34:58 22 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 15:34:58 22 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 15:34:58 22 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 15:34:58 22 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 15:34:58 22 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 15:34:58 22 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 15:34:58 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:34:58 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:34:58 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:34:58 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:34:58 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:34:58 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:34:58 22 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:34:58 22 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 15:34:58 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:34:58 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:34:58 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:34:58 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:34:58 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:34:58 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:34:58 22 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:34:58 22 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 15:34:58 22 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 15:34:58 22 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 15:34:58 22 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 15:34:58 22 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 15:34:58 22 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 15:34:58 22 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 15:34:58 22 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 15:34:58 22 Apr 2017 UTC 15:37:05 22 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 1723 15:37:05 22 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 15:40:26 22 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 1996 15:40:26 22 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 15:40:26 22 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 15:40:26 22 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 15:40:26 22 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 15:40:26 22 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170422054025 ] 15:40:26 22 Apr 2017 UTC: INFO: Base.py(1333): PID:2003 15:40:26 22 Apr 2017 UTC: INFO: Base.py(1375): Started processing 15:40:26 22 Apr 2017 UTC 15:40:26 22 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 15:40:27 22 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 15:40:27 22 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 15:40:27 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:40:27 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:619 calls_made:2 call_cycle:0 15:40:27 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:40:27 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:619 calls_made:2 call_cycle:0 15:40:27 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:40:27 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:619 calls_made:2 call_cycle:0 15:40:27 22 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:619 calls_made:2 call_cycle:0 2234.0720 -15800.5310 04/22/17 15:31:01 UTC) to sdrifter@soest.hawaii.edu 15:40:27 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:619 calls_made:2 call_cycle:0 15:40:27 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:40:27 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:619 calls_made:2 call_cycle:0 15:40:27 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:40:27 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:619 calls_made:2 call_cycle:0 15:40:27 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:40:27 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:619 calls_made:2 call_cycle:0 15:40:27 22 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:40:27 22 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 15:40:38 22 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 15:40:39 22 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 15:40:39 22 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 15:40:39 22 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 15:40:40 22 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 15:40:40 22 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 15:40:45 22 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0619lz 15:40:45 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0619lz.x00 15:40:45 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0619lz.x01 15:40:45 22 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0619lz.r in process_file_group 15:40:45 22 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260619.log 15:40:45 22 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 15:40:45 22 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0619dz 15:40:45 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0619dz.x00 15:40:45 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0619dz.x01 15:40:45 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0619dz.x02 15:40:45 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0619dz.x03 15:40:45 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0619dz.x04 15:40:45 22 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0619dz.r in process_file_group 15:40:46 22 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [619] 15:40:46 22 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [619] 15:40:46 22 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260619) for profiles 15:40:46 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 15:40:46 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/670) 669 670 to QC_BAD because CT out of water 15:40:46 22 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.110m) 15:40:46 22 Apr 2017 UTC: INFO: QC.py(365): Changed (1/670) 270 to QC_PROBABLY_BAD because raw temperature spikes 15:40:46 22 Apr 2017 UTC: INFO: QC.py(377): Changed (1/670) 670 to QC_BAD because raw salinity below bound 15:40:46 22 Apr 2017 UTC: INFO: QC.py(180): Changed (1/670) 270 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 15:40:46 22 Apr 2017 UTC: INFO: QC.py(180): Changed (1/670) 669 to QC_BAD because changed raw cond implies changed raw salinity 15:40:46 22 Apr 2017 UTC: INFO: QC.py(365): Changed (1/670) 270 to QC_INTERPOLATED because temperature spikes 15:40:46 22 Apr 2017 UTC: INFO: QC.py(377): Changed (1/670) 670 to QC_BAD because salinity below bound 15:40:46 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/670) 268:272 to QC_BAD because slow apogee CT flow 15:40:46 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/670) 1:6 to QC_BAD because prior to dive start 15:40:46 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/670) 668 to QC_BAD because end of climb 15:40:46 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/670) 1:6 268:272 668:670 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 15:40:46 22 Apr 2017 UTC: INFO: QC.py(180): Changed (14/670) 1:6 268:272 668:670 to QC_BAD because changed corrected salin implies changed speed 15:40:47 22 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 15:40:47 22 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 619 interp_salinity data_points in_between 130 136 % suspect thermal-inertia points 133 15:40:47 22 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 619 interp_salinity data_points in_between 377 409 % suspect thermal-inertia points 393 15:40:47 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.77 cm/s 15:40:47 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.42 cm/s 15:40:47 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 15:40:47 22 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (216/670) 139 140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 15:40:47 22 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (216/670) 139 140 142:145 147:150 152:155 157:160 162:165 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 15:40:47 22 Apr 2017 UTC: INFO: QC.py(180): Changed (14/670) 1:6 268:272 668:670 to QC_BAD because changed salinity implies changed optode oxygen 15:40:47 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 15:40:47 22 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 15:40:47 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 15:40:47 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 619: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.09% reduction 15:40:48 22 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.619 15:40:48 22 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 15:40:48 22 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 15:40:48 22 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 15:40:48 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 15:40:48 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 15:46:11 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 15:46:13 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 15:46:13 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 15:47:30 22 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 15:47:30 22 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 15:47:30 22 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 15:47:30 22 Apr 2017 UTC /home/sg626/p6260619.log /home/sg626/p6260619.eng /home/sg626/p6260619.asc /home/sg626/p6260619.pro /home/sg626/p6260619.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 15:47:30 22 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 15:47:30 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:47:30 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:47:30 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:47:30 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:47:30 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:47:30 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:47:30 22 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:47:30 22 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 15:47:30 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:47:30 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:47:30 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:47:30 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:47:30 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:47:30 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:47:30 22 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:47:30 22 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 15:47:30 22 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 15:47:30 22 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 15:47:30 22 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 15:47:30 22 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 15:47:30 22 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 15:47:30 22 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 15:47:30 22 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 15:47:30 22 Apr 2017 UTC 19:39:35 22 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 9371 19:39:35 22 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:42:59 22 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 9659 19:42:59 22 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:42:59 22 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:42:59 22 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:42:59 22 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:42:59 22 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170422094258 ] 19:42:59 22 Apr 2017 UTC: INFO: Base.py(1333): PID:9667 19:42:59 22 Apr 2017 UTC: INFO: Base.py(1375): Started processing 19:42:59 22 Apr 2017 UTC 19:42:59 22 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:43:00 22 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:43:00 22 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:43:00 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:43:00 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:620 calls_made:2 call_cycle:0 19:43:00 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:43:00 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:620 calls_made:2 call_cycle:0 19:43:00 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:43:00 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:620 calls_made:2 call_cycle:0 19:43:00 22 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:620 calls_made:2 call_cycle:0 2233.4180 -15800.1140 04/22/17 19:34:42 UTC) to sdrifter@soest.hawaii.edu 19:43:00 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:620 calls_made:2 call_cycle:0 19:43:00 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:43:00 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:620 calls_made:2 call_cycle:0 19:43:00 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:43:00 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:620 calls_made:2 call_cycle:0 19:43:00 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:43:00 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:620 calls_made:2 call_cycle:0 19:43:00 22 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:43:00 22 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:43:11 22 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:43:12 22 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:43:12 22 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:43:12 22 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:43:12 22 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:43:12 22 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:43:18 22 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0620lz 19:43:18 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0620lz.x00 19:43:18 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0620lz.x01 19:43:18 22 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0620lz.r in process_file_group 19:43:18 22 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260620.log 19:43:18 22 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:43:18 22 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0620dz 19:43:18 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0620dz.x00 19:43:18 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0620dz.x01 19:43:18 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0620dz.x02 19:43:18 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0620dz.x03 19:43:18 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0620dz.x04 19:43:18 22 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0620dz.r in process_file_group 19:43:19 22 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [620] 19:43:19 22 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [620] 19:43:19 22 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260620) for profiles 19:43:19 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 19:43:19 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/697) 696 697 to QC_BAD because CT out of water 19:43:19 22 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.074m) 19:43:19 22 Apr 2017 UTC: INFO: QC.py(365): Changed (3/697) 2 3 270 to QC_PROBABLY_BAD because raw temperature spikes 19:43:19 22 Apr 2017 UTC: INFO: QC.py(180): Changed (3/697) 2 3 270 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:43:19 22 Apr 2017 UTC: INFO: QC.py(180): Changed (2/697) 696 697 to QC_BAD because changed raw cond implies changed raw salinity 19:43:19 22 Apr 2017 UTC: INFO: QC.py(365): Changed (3/697) 2 3 270 to QC_INTERPOLATED because temperature spikes 19:43:19 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/697) 268:272 to QC_BAD because slow apogee CT flow 19:43:19 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/697) 1:6 to QC_BAD because prior to dive start 19:43:19 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/697) 1:6 268:272 696 697 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:43:19 22 Apr 2017 UTC: INFO: QC.py(180): Changed (13/697) 1:6 268:272 696 697 to QC_BAD because changed corrected salin implies changed speed 19:43:20 22 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:43:20 22 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 620 interp_salinity data_points in_between 422 430 % suspect thermal-inertia points 427 19:43:20 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.13 cm/s 19:43:20 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.42 cm/s 19:43:20 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:43:20 22 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (210/697) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:43:20 22 Apr 2017 UTC: INFO: QC.py(180): Changed (2/697) 2 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 19:43:20 22 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (210/697) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 19:43:20 22 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (3/697) 692 694 696 to QC_BAD because bad aa4330 oyxgen 19:43:20 22 Apr 2017 UTC: INFO: QC.py(180): Changed (2/697) 2 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 19:43:20 22 Apr 2017 UTC: INFO: QC.py(180): Changed (12/697) 1:6 268:272 697 to QC_BAD because changed salinity implies changed optode oxygen 19:43:20 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:43:20 22 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:43:20 22 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 19:43:20 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 620: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.87% reduction 19:43:20 22 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.620 19:43:20 22 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:43:20 22 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:43:20 22 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:43:21 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 19:43:21 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 19:48:44 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 19:48:46 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 19:48:46 22 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 19:50:05 22 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:50:05 22 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:50:05 22 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:50:05 22 Apr 2017 UTC /home/sg626/p6260620.log /home/sg626/p6260620.eng /home/sg626/p6260620.asc /home/sg626/p6260620.pro /home/sg626/p6260620.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 19:50:05 22 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:50:05 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:50:05 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:50:05 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:50:05 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:50:05 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:50:05 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:50:05 22 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:50:05 22 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:50:05 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:50:05 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:50:05 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:50:05 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:50:05 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:50:05 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:50:05 22 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:50:05 22 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:50:05 22 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:50:05 22 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:50:05 22 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:50:05 22 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:50:05 22 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:50:05 22 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:50:05 22 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 19:50:05 22 Apr 2017 UTC 23:38:57 22 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 17084 23:38:57 22 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 23:41:17 22 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 17346 23:41:17 22 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:41:17 22 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:41:17 22 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:41:17 22 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:41:17 22 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170422134117 ] 23:41:17 22 Apr 2017 UTC: INFO: Base.py(1333): PID:17354 23:41:17 22 Apr 2017 UTC: INFO: Base.py(1375): Started processing 23:41:17 22 Apr 2017 UTC 23:41:17 22 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:41:19 22 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:41:19 22 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:41:19 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:41:19 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:621 calls_made:1 call_cycle:0 23:41:19 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:41:19 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:621 calls_made:1 call_cycle:0 23:41:19 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:41:19 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:621 calls_made:1 call_cycle:0 23:41:19 22 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:621 calls_made:1 call_cycle:0 2234.6520 -15801.0210 04/22/17 23:36:22 UTC) to sdrifter@soest.hawaii.edu 23:41:19 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:621 calls_made:1 call_cycle:0 23:41:19 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:41:19 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:621 calls_made:1 call_cycle:0 23:41:19 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:41:19 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:621 calls_made:1 call_cycle:0 23:41:19 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:41:19 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:621 calls_made:1 call_cycle:0 23:41:19 22 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:41:19 22 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:41:29 22 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:41:31 22 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:41:31 22 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:41:31 22 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:41:31 22 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:41:31 22 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:41:37 22 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0621lz 23:41:37 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621lz.x00 23:41:37 22 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0621lz.r in process_file_group 23:41:37 22 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0621lz.r - expected 0x2164536897, generated 0xea77beb9 23:41:37 22 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0621lz.r - expected 0xe367472d, generated 0x440 23:41:37 22 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0621lz.r - skipping 23:41:37 22 Apr 2017 UTC: ERROR: Base.py(243): Could not process sg0621lz - skipping 23:41:37 22 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:41:37 22 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0621lz 23:41:37 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621lz.x00 23:41:37 22 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0621lz.r in process_file_group 23:41:37 22 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0621lz.r - expected 0x2164536897, generated 0xea77beb9 23:41:37 22 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0621lz.r - expected 0xe367472d, generated 0x440 23:41:37 22 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0621lz.r - skipping 23:41:37 22 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0621lz - skipping 23:41:37 22 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 23:41:37 22 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 23:41:37 22 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 23:41:37 22 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.621 23:41:37 22 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:41:37 22 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:41:37 22 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:41:37 22 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:41:37 22 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:41:37 22 Apr 2017 UTC: ERROR: Base.py(1960): Dive [621] failed to process completely. The following files were not processed completely: /home/sg626/sg0621lz.r Glider logout seen - transmissions from glider complete Consult baselog_170422134117 for details. 23:41:37 22 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:41:37 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:41:37 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:41:37 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:41:37 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:41:37 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:41:37 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:41:37 22 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:41:37 22 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:41:37 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:41:37 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:41:37 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:41:37 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:41:37 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:41:37 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:41:38 22 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:41:38 22 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:41:38 22 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:41:38 22 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:41:38 22 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:41:38 22 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:41:38 22 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:41:38 22 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:41:38 22 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 23:41:38 22 Apr 2017 UTC 23:43:54 22 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 17615 23:43:54 22 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 23:47:01 22 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 17737 23:47:01 22 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:47:01 22 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:47:01 22 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:47:01 22 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:47:01 22 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170422134700 ] 23:47:01 22 Apr 2017 UTC: INFO: Base.py(1333): PID:17745 23:47:01 22 Apr 2017 UTC: INFO: Base.py(1375): Started processing 23:47:01 22 Apr 2017 UTC 23:47:01 22 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:47:03 22 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:47:03 22 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:47:03 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:47:03 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:621 calls_made:2 call_cycle:0 23:47:03 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:47:03 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:621 calls_made:2 call_cycle:0 23:47:03 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:47:03 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:621 calls_made:2 call_cycle:0 23:47:03 22 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:621 calls_made:2 call_cycle:0 2234.6520 -15801.0210 04/22/17 23:36:22 UTC) to sdrifter@soest.hawaii.edu 23:47:03 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:621 calls_made:2 call_cycle:0 23:47:03 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:47:03 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:621 calls_made:2 call_cycle:0 23:47:03 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:47:03 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:621 calls_made:2 call_cycle:0 23:47:03 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:47:03 22 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:621 calls_made:2 call_cycle:0 23:47:03 22 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:47:03 22 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:47:13 22 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:47:15 22 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:47:15 22 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:47:15 22 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:47:15 22 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:47:15 22 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:47:21 22 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0621lz 23:47:21 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621lz.x00 23:47:21 22 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0621lz.x00 file size (686) not equal to expected size (4096) 23:47:21 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621lz.x01 23:47:21 22 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0621lz.r in process_file_group 23:47:21 22 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0621lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 0 23:47:21 22 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0621lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 1 23:47:21 22 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0621lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 2 23:47:21 22 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0621lz.r - expected 0x1954075670, generated 0x0 23:47:21 22 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0621lz.r - expected 0x41a8, generated 0x0 23:47:21 22 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0621lz.r - skipping 23:47:21 22 Apr 2017 UTC: ERROR: Base.py(243): Could not process sg0621lz - skipping 23:47:21 22 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:47:21 22 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0621dz 23:47:21 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x00 23:47:21 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x01 23:47:21 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x02 23:47:21 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x03 23:47:21 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x04 23:47:21 22 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0621dz.r in process_file_group 23:47:21 22 Apr 2017 UTC: ERROR: LogFile.py(85): Could not open ./p6260621.log for reading 23:47:21 22 Apr 2017 UTC: ERROR: Base.py(606): Could not parse ./p6260621.log, skipping eng file creation 23:47:21 22 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0621dz - skipping 23:47:21 22 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:47:21 22 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0621lz 23:47:21 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621lz.x00 23:47:21 22 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0621lz.x00 file size (686) not equal to expected size (4096) 23:47:21 22 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621lz.x01 23:47:21 22 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0621lz.r in process_file_group 23:47:21 22 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0621lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 0 23:47:21 22 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0621lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 1 23:47:21 22 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0621lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 2 23:47:21 22 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0621lz.r - expected 0x1954075670, generated 0x0 23:47:21 22 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0621lz.r - expected 0x41a8, generated 0x0 23:47:21 22 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0621lz.r - skipping 23:47:21 22 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0621lz - skipping 23:47:21 22 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 23:47:21 22 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [621] 23:47:21 22 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 23:47:21 22 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.621 23:47:21 22 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:47:21 22 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:47:21 22 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:47:21 22 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:47:21 22 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:47:21 22 Apr 2017 UTC: ERROR: Base.py(1960): Dive [621] failed to process completely. The following files were not processed completely: /home/sg626/sg0621lz.r Fragment ./sg0621lz.x00 file size (686) not equal to expected size (4096) - consider resend_dive /l 621 00 Glider logout seen - transmissions from glider complete Consult baselog_170422134700 for details. 23:47:21 22 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:47:21 22 Apr 2017 UTC /home/sg626/p6260621.eng /home/sg626/p6260621.asc 23:47:21 22 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:47:21 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:47:21 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:47:21 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:47:21 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:47:21 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:47:21 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:47:21 22 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:47:21 22 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:47:21 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:47:21 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:47:21 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:47:21 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:47:21 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:47:21 22 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:47:21 22 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:47:21 22 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:47:21 22 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:47:21 22 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:47:21 22 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:47:21 22 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:47:21 22 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:47:21 22 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:47:21 22 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 23:47:21 22 Apr 2017 UTC 03:45:19 23 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 24972 03:45:19 23 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:48:44 23 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 25096 03:48:44 23 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:48:44 23 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:48:44 23 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:48:44 23 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:48:44 23 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170422174843 ] 03:48:44 23 Apr 2017 UTC: INFO: Base.py(1333): PID:25103 03:48:44 23 Apr 2017 UTC: INFO: Base.py(1375): Started processing 03:48:44 23 Apr 2017 UTC 03:48:44 23 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:48:46 23 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:48:46 23 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:48:46 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:48:46 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:622 calls_made:1 call_cycle:0 03:48:46 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:48:46 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:622 calls_made:1 call_cycle:0 03:48:46 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:48:46 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:622 calls_made:1 call_cycle:0 03:48:46 23 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:622 calls_made:1 call_cycle:0 2233.7550 -15801.5010 04/23/17 03:42:48 UTC) to sdrifter@soest.hawaii.edu 03:48:46 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:622 calls_made:1 call_cycle:0 03:48:46 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:48:46 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:622 calls_made:1 call_cycle:0 03:48:46 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:48:46 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:622 calls_made:1 call_cycle:0 03:48:46 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:48:46 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:622 calls_made:1 call_cycle:0 03:48:46 23 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:48:46 23 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:48:56 23 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:48:58 23 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:48:58 23 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:48:58 23 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:48:58 23 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:48:58 23 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:49:04 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0621lz 03:49:04 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621lz.x00 03:49:04 23 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0621lz.x00 file size (686) not equal to expected size (4096) 03:49:04 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621lz.x01 03:49:04 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0621lz.r in process_file_group 03:49:04 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0621lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 0 03:49:04 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0621lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 1 03:49:04 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0621lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 2 03:49:04 23 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0621lz.r - expected 0x1954075670, generated 0x0 03:49:04 23 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0621lz.r - expected 0x41a8, generated 0x0 03:49:04 23 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0621lz.r - skipping 03:49:04 23 Apr 2017 UTC: ERROR: Base.py(243): Could not process sg0621lz - skipping 03:49:04 23 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:49:04 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0621dz 03:49:04 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x00 03:49:04 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x01 03:49:04 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x02 03:49:04 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x03 03:49:04 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x04 03:49:04 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0621dz.r in process_file_group 03:49:04 23 Apr 2017 UTC: ERROR: LogFile.py(85): Could not open ./p6260621.log for reading 03:49:04 23 Apr 2017 UTC: ERROR: Base.py(606): Could not parse ./p6260621.log, skipping eng file creation 03:49:04 23 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0621dz - skipping 03:49:04 23 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:49:04 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0621lz 03:49:04 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621lz.x00 03:49:04 23 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0621lz.x00 file size (686) not equal to expected size (4096) 03:49:04 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621lz.x01 03:49:04 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0621lz.r in process_file_group 03:49:04 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0621lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 0 03:49:04 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0621lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 1 03:49:04 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0621lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 2 03:49:04 23 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0621lz.r - expected 0x1954075670, generated 0x0 03:49:04 23 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0621lz.r - expected 0x41a8, generated 0x0 03:49:04 23 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0621lz.r - skipping 03:49:04 23 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0621lz - skipping 03:49:04 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0622lz 03:49:04 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0622lz.x00 03:49:04 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0622lz.x01 03:49:04 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0622lz.r in process_file_group 03:49:04 23 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260622.log 03:49:04 23 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:49:04 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0622dz 03:49:04 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0622dz.x00 03:49:04 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0622dz.x01 03:49:04 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0622dz.x02 03:49:04 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0622dz.x03 03:49:04 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0622dz.x04 03:49:04 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0622dz.r in process_file_group 03:49:04 23 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [622] 03:49:04 23 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [621, 622] 03:49:05 23 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260622) for profiles 03:49:05 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 03:49:05 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/743) 741:743 to QC_BAD because CT out of water 03:49:05 23 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.135m) 03:49:05 23 Apr 2017 UTC: INFO: QC.py(365): Changed (2/743) 2 742 to QC_PROBABLY_BAD because raw temperature spikes 03:49:05 23 Apr 2017 UTC: INFO: QC.py(408): Changed (1/743) 2 to QC_PROBABLY_BAD because raw conductivity spikes 03:49:05 23 Apr 2017 UTC: INFO: QC.py(180): Changed (2/743) 2 742 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 03:49:05 23 Apr 2017 UTC: INFO: QC.py(180): Changed (3/743) 741:743 to QC_BAD because changed raw cond implies changed raw salinity 03:49:05 23 Apr 2017 UTC: INFO: QC.py(365): Changed (2/743) 2 742 to QC_INTERPOLATED because temperature spikes 03:49:05 23 Apr 2017 UTC: INFO: QC.py(408): Changed (1/743) 2 to QC_INTERPOLATED because conductivity spikes 03:49:05 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/743) 269:273 to QC_BAD because slow apogee CT flow 03:49:05 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/743) 1:6 to QC_BAD because prior to dive start 03:49:05 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/743) 740 to QC_BAD because end of climb 03:49:05 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/743) 1:6 269:273 740:743 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:49:05 23 Apr 2017 UTC: INFO: QC.py(180): Changed (15/743) 1:6 269:273 740:743 to QC_BAD because changed corrected salin implies changed speed 03:49:06 23 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 03:49:06 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.22 cm/s 03:49:06 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.35 cm/s 03:49:06 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:49:06 23 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (203/743) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:49:06 23 Apr 2017 UTC: INFO: QC.py(180): Changed (2/743) 2 742 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:49:06 23 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (203/743) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 03:49:06 23 Apr 2017 UTC: INFO: QC.py(180): Changed (2/743) 2 742 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 03:49:06 23 Apr 2017 UTC: INFO: QC.py(180): Changed (15/743) 1:6 269:273 740:743 to QC_BAD because changed salinity implies changed optode oxygen 03:49:06 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:49:06 23 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:49:06 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 03:49:06 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 622: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.02% reduction 03:49:06 23 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.622 03:49:06 23 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:49:06 23 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:49:06 23 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:49:07 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 03:49:07 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 03:54:28 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 03:54:30 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 03:54:30 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 03:55:48 23 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:55:48 23 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:55:49 23 Apr 2017 UTC: ERROR: Base.py(1960): Dive [621] failed to process completely. The following files were not processed completely: /home/sg626/sg0621lz.r Fragment ./sg0621lz.x00 file size (686) not equal to expected size (4096) - consider resend_dive /l 621 00 Glider logout seen - transmissions from glider complete Consult baselog_170422174843 for details. 03:55:49 23 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:55:49 23 Apr 2017 UTC /home/sg626/p6260621.eng /home/sg626/p6260622.log /home/sg626/p6260622.eng /home/sg626/p6260621.asc /home/sg626/p6260622.asc /home/sg626/p6260622.pro /home/sg626/p6260622.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 03:55:49 23 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:55:49 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:55:49 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:55:49 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:55:49 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:55:49 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:55:49 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:55:49 23 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:55:49 23 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:55:49 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:55:49 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:55:49 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:55:49 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:55:49 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:55:49 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:55:49 23 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:55:49 23 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:55:49 23 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:55:49 23 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:55:49 23 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:55:49 23 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:55:49 23 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:55:49 23 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:55:49 23 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 03:55:49 23 Apr 2017 UTC 07:38:23 23 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 32447 07:38:23 23 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:41:42 23 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 32726 07:41:42 23 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:41:42 23 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:41:42 23 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:41:42 23 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:41:42 23 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170422214142 ] 07:41:42 23 Apr 2017 UTC: INFO: Base.py(1333): PID:32733 07:41:42 23 Apr 2017 UTC: INFO: Base.py(1375): Started processing 07:41:42 23 Apr 2017 UTC 07:41:42 23 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:41:44 23 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:41:44 23 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:41:44 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:41:44 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:623 calls_made:1 call_cycle:0 07:41:44 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:41:44 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:623 calls_made:1 call_cycle:0 07:41:44 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:41:44 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:623 calls_made:1 call_cycle:0 07:41:44 23 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:623 calls_made:1 call_cycle:0 2233.8320 -15801.3010 04/23/17 07:35:47 UTC) to sdrifter@soest.hawaii.edu 07:41:44 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:623 calls_made:1 call_cycle:0 07:41:44 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:41:44 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:623 calls_made:1 call_cycle:0 07:41:44 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:41:44 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:623 calls_made:1 call_cycle:0 07:41:44 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:41:44 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:623 calls_made:1 call_cycle:0 07:41:44 23 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:41:44 23 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:41:54 23 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:41:56 23 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:41:56 23 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:41:56 23 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:41:56 23 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:41:56 23 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:42:02 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0621lz 07:42:02 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621lz.x00 07:42:02 23 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0621lz.x00 file size (686) not equal to expected size (4096) 07:42:02 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621lz.x01 07:42:02 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0621lz.r in process_file_group 07:42:02 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0621lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 0 07:42:02 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0621lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 1 07:42:02 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0621lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 2 07:42:02 23 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0621lz.r - expected 0x1954075670, generated 0x0 07:42:02 23 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0621lz.r - expected 0x41a8, generated 0x0 07:42:02 23 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0621lz.r - skipping 07:42:02 23 Apr 2017 UTC: ERROR: Base.py(243): Could not process sg0621lz - skipping 07:42:02 23 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:42:02 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0621dz 07:42:02 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x00 07:42:02 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x01 07:42:02 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x02 07:42:02 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x03 07:42:02 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x04 07:42:02 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0621dz.r in process_file_group 07:42:02 23 Apr 2017 UTC: ERROR: LogFile.py(85): Could not open ./p6260621.log for reading 07:42:02 23 Apr 2017 UTC: ERROR: Base.py(606): Could not parse ./p6260621.log, skipping eng file creation 07:42:02 23 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0621dz - skipping 07:42:02 23 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:42:02 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0621lz 07:42:02 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621lz.x00 07:42:02 23 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0621lz.x00 file size (686) not equal to expected size (4096) 07:42:02 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621lz.x01 07:42:02 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0621lz.r in process_file_group 07:42:02 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0621lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 0 07:42:02 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0621lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 1 07:42:02 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0621lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 2 07:42:02 23 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0621lz.r - expected 0x1954075670, generated 0x0 07:42:02 23 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0621lz.r - expected 0x41a8, generated 0x0 07:42:02 23 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0621lz.r - skipping 07:42:02 23 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0621lz - skipping 07:42:02 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0623lz 07:42:02 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0623lz.x00 07:42:02 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0623lz.x01 07:42:02 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0623lz.r in process_file_group 07:42:02 23 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260623.log 07:42:02 23 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:42:02 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0623dz 07:42:02 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0623dz.x00 07:42:02 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0623dz.x01 07:42:02 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0623dz.x02 07:42:03 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0623dz.x03 07:42:03 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0623dz.x04 07:42:03 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0623dz.r in process_file_group 07:42:03 23 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [623] 07:42:03 23 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [621, 623] 07:42:03 23 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260623) for profiles 07:42:03 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 07:42:03 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/699) 696 698 to QC_BAD because CT out of water 07:42:03 23 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.199m) 07:42:03 23 Apr 2017 UTC: INFO: QC.py(365): Changed (6/699) 3:5 696:698 to QC_PROBABLY_BAD because raw temperature spikes 07:42:03 23 Apr 2017 UTC: INFO: QC.py(377): Changed (1/699) 696 to QC_BAD because raw salinity below bound 07:42:03 23 Apr 2017 UTC: INFO: QC.py(408): Changed (1/699) 697 to QC_PROBABLY_BAD because raw conductivity spikes 07:42:03 23 Apr 2017 UTC: INFO: QC.py(180): Changed (5/699) 3:5 697 698 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:42:03 23 Apr 2017 UTC: INFO: QC.py(180): Changed (1/699) 698 to QC_BAD because changed raw cond implies changed raw salinity 07:42:03 23 Apr 2017 UTC: INFO: QC.py(365): Changed (6/699) 3:5 696:698 to QC_INTERPOLATED because temperature spikes 07:42:03 23 Apr 2017 UTC: INFO: QC.py(377): Changed (1/699) 696 to QC_BAD because salinity below bound 07:42:03 23 Apr 2017 UTC: INFO: QC.py(408): Changed (1/699) 697 to QC_INTERPOLATED because conductivity spikes 07:42:03 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/699) 262:266 to QC_BAD because slow apogee CT flow 07:42:03 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/699) 1:6 to QC_BAD because prior to dive start 07:42:03 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (3/699) 695 697 699 to QC_BAD because end of climb 07:42:03 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/699) 1:6 262:266 695:699 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:42:03 23 Apr 2017 UTC: INFO: QC.py(180): Changed (16/699) 1:6 262:266 695:699 to QC_BAD because changed corrected salin implies changed speed 07:42:04 23 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:42:04 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.70 cm/s 07:42:04 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.50 cm/s 07:42:04 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:42:04 23 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (198/699) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:42:04 23 Apr 2017 UTC: INFO: QC.py(180): Changed (6/699) 3:5 696:698 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:42:04 23 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (198/699) 145 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 07:42:04 23 Apr 2017 UTC: INFO: QC.py(180): Changed (6/699) 3:5 696:698 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:42:04 23 Apr 2017 UTC: INFO: QC.py(180): Changed (16/699) 1:6 262:266 695:699 to QC_BAD because changed salinity implies changed optode oxygen 07:42:04 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:42:04 23 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:42:04 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 07:42:05 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 623: Data set size for profile, binned and kkyy files reduced by 16 points, a 2.29% reduction 07:42:05 23 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.623 07:42:05 23 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:42:05 23 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:42:05 23 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:42:05 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 07:42:05 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:47:30 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 07:47:32 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:47:32 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:48:50 23 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:48:50 23 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:48:50 23 Apr 2017 UTC: ERROR: Base.py(1960): Dive [621] failed to process completely. The following files were not processed completely: /home/sg626/sg0621lz.r Fragment ./sg0621lz.x00 file size (686) not equal to expected size (4096) - consider resend_dive /l 621 00 Glider logout seen - transmissions from glider complete Consult baselog_170422214142 for details. 07:48:50 23 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:48:50 23 Apr 2017 UTC /home/sg626/p6260621.eng /home/sg626/p6260623.log /home/sg626/p6260623.eng /home/sg626/p6260621.asc /home/sg626/p6260623.asc /home/sg626/p6260623.pro /home/sg626/p6260623.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:48:50 23 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:48:50 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:48:50 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:48:50 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:48:50 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:48:50 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:48:50 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:48:50 23 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:48:50 23 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:48:50 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:48:50 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:48:50 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:48:51 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:48:51 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:48:51 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:48:51 23 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:48:51 23 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:48:51 23 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:48:51 23 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:48:51 23 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:48:51 23 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:48:51 23 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:48:51 23 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:48:51 23 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 07:48:51 23 Apr 2017 UTC 11:36:04 23 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 7997 11:36:04 23 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 11:41:40 23 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 8492 11:41:40 23 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 11:43:46 23 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 8600 11:43:46 23 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:43:46 23 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 11:43:46 23 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 11:43:46 23 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:43:46 23 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170423014345 ] 11:43:46 23 Apr 2017 UTC: INFO: Base.py(1333): PID:8608 11:43:46 23 Apr 2017 UTC: INFO: Base.py(1375): Started processing 11:43:46 23 Apr 2017 UTC 11:43:46 23 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 11:43:47 23 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 11:43:47 23 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:43:47 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:43:47 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:624 calls_made:2 call_cycle:0 11:43:47 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:43:47 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:624 calls_made:2 call_cycle:0 11:43:47 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:43:47 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:624 calls_made:2 call_cycle:0 11:43:47 23 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:624 calls_made:2 call_cycle:0 2234.1420 -15801.2530 04/23/17 11:33:30 UTC) to sdrifter@soest.hawaii.edu 11:43:47 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:624 calls_made:2 call_cycle:0 11:43:47 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:43:47 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:624 calls_made:2 call_cycle:0 11:43:47 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:43:47 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:624 calls_made:2 call_cycle:0 11:43:47 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:43:47 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:624 calls_made:2 call_cycle:0 11:43:47 23 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:43:47 23 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:43:58 23 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:43:59 23 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:43:59 23 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 11:43:59 23 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:43:59 23 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:43:59 23 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 11:44:05 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0621lz 11:44:05 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621lz.x00 11:44:05 23 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0621lz.x00 file size (686) not equal to expected size (4096) 11:44:05 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621lz.x01 11:44:05 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0621lz.r in process_file_group 11:44:05 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0621lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 0 11:44:05 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0621lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 1 11:44:05 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0621lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 2 11:44:05 23 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0621lz.r - expected 0x1954075670, generated 0x0 11:44:05 23 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0621lz.r - expected 0x41a8, generated 0x0 11:44:05 23 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0621lz.r - skipping 11:44:05 23 Apr 2017 UTC: ERROR: Base.py(243): Could not process sg0621lz - skipping 11:44:05 23 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 11:44:05 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0621dz 11:44:05 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x00 11:44:05 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x01 11:44:05 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x02 11:44:05 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x03 11:44:05 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x04 11:44:05 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0621dz.r in process_file_group 11:44:06 23 Apr 2017 UTC: ERROR: LogFile.py(85): Could not open ./p6260621.log for reading 11:44:06 23 Apr 2017 UTC: ERROR: Base.py(606): Could not parse ./p6260621.log, skipping eng file creation 11:44:06 23 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0621dz - skipping 11:44:06 23 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 11:44:06 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0621lz 11:44:06 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621lz.x00 11:44:06 23 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0621lz.x00 file size (686) not equal to expected size (4096) 11:44:06 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621lz.x01 11:44:06 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0621lz.r in process_file_group 11:44:06 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0621lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 0 11:44:06 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0621lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 1 11:44:06 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0621lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 2 11:44:06 23 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0621lz.r - expected 0x1954075670, generated 0x0 11:44:06 23 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0621lz.r - expected 0x41a8, generated 0x0 11:44:06 23 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0621lz.r - skipping 11:44:06 23 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0621lz - skipping 11:44:06 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0624lz 11:44:06 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624lz.x00 11:44:06 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624lz.x01 11:44:06 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0624lz.r in process_file_group 11:44:06 23 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260624.log 11:44:06 23 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 11:44:06 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0624dz 11:44:06 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x00 11:44:06 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x01 11:44:06 23 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) 11:44:06 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x02 11:44:06 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x03 11:44:06 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x04 11:44:06 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0624dz.r in process_file_group 11:44:06 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 11 11:44:06 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 12 11:44:06 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 13 11:44:06 23 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0624dz.r - expected 0x3356983894, generated 0x764acec6 11:44:06 23 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0624dz.r - expected 0xf2ed, generated 0x9548 11:44:06 23 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0624dz.r - skipping 11:44:06 23 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0624dz - skipping 11:44:06 23 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 11:44:06 23 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [621, 624] 11:44:06 23 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 11:44:06 23 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.624 11:44:06 23 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:44:06 23 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:44:06 23 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:44:06 23 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:44:06 23 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:44:06 23 Apr 2017 UTC: ERROR: Base.py(1960): Dive [621, 624] failed to process completely. The following files were not processed completely: /home/sg626/sg0621lz.r Fragment ./sg0621lz.x00 file size (686) not equal to expected size (4096) - consider resend_dive /l 621 00 /home/sg626/sg0624dz.r Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) - consider resend_dive /d 624 01 Glider logout seen - transmissions from glider complete Consult baselog_170423014345 for details. 11:44:06 23 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:44:06 23 Apr 2017 UTC /home/sg626/p6260621.eng /home/sg626/p6260624.log /home/sg626/p6260621.asc 11:44:06 23 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:44:06 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:44:06 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:44:06 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:44:06 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:44:06 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:44:06 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:44:06 23 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:44:06 23 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:44:06 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:44:06 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:44:06 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:44:06 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:44:06 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:44:06 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:44:06 23 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:44:06 23 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 11:44:06 23 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 11:44:06 23 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 11:44:06 23 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 11:44:06 23 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:44:06 23 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:44:06 23 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:44:06 23 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 11:44:06 23 Apr 2017 UTC 15:36:04 23 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 17739 15:36:04 23 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 15:40:18 23 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 18039 15:40:18 23 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 15:40:18 23 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 15:40:18 23 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 15:40:18 23 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 15:40:18 23 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170423054017 ] 15:40:18 23 Apr 2017 UTC: INFO: Base.py(1333): PID:18047 15:40:18 23 Apr 2017 UTC: INFO: Base.py(1375): Started processing 15:40:18 23 Apr 2017 UTC 15:40:18 23 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 15:40:20 23 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 15:40:20 23 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 15:40:20 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:40:20 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:625 calls_made:1 call_cycle:0 15:40:20 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:40:20 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:625 calls_made:1 call_cycle:0 15:40:20 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:40:20 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:625 calls_made:1 call_cycle:0 15:40:20 23 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:625 calls_made:1 call_cycle:0 2233.7960 -15801.0270 04/23/17 15:33:30 UTC) to sdrifter@soest.hawaii.edu 15:40:20 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:625 calls_made:1 call_cycle:0 15:40:20 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:40:20 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:625 calls_made:1 call_cycle:0 15:40:20 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:40:20 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:625 calls_made:1 call_cycle:0 15:40:20 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:40:20 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:625 calls_made:1 call_cycle:0 15:40:20 23 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:40:20 23 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 15:40:30 23 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 15:40:32 23 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 15:40:32 23 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 15:40:32 23 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 15:40:32 23 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 15:40:32 23 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 15:40:38 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0621lz 15:40:38 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621lz.x00 15:40:38 23 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0621lz.x00 file size (686) not equal to expected size (4096) 15:40:38 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621lz.x01 15:40:38 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0621lz.r in process_file_group 15:40:38 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0621lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 0 15:40:38 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0621lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 1 15:40:38 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0621lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 2 15:40:38 23 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0621lz.r - expected 0x1954075670, generated 0x0 15:40:38 23 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0621lz.r - expected 0x41a8, generated 0x0 15:40:38 23 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0621lz.r - skipping 15:40:38 23 Apr 2017 UTC: ERROR: Base.py(243): Could not process sg0621lz - skipping 15:40:38 23 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 15:40:38 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0621dz 15:40:38 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x00 15:40:38 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x01 15:40:38 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x02 15:40:38 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x03 15:40:38 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x04 15:40:38 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0621dz.r in process_file_group 15:40:38 23 Apr 2017 UTC: ERROR: LogFile.py(85): Could not open ./p6260621.log for reading 15:40:38 23 Apr 2017 UTC: ERROR: Base.py(606): Could not parse ./p6260621.log, skipping eng file creation 15:40:38 23 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0621dz - skipping 15:40:38 23 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 15:40:38 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0621lz 15:40:38 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621lz.x00 15:40:38 23 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0621lz.x00 file size (686) not equal to expected size (4096) 15:40:38 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621lz.x01 15:40:38 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0621lz.r in process_file_group 15:40:38 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0621lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 0 15:40:38 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0621lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 1 15:40:38 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0621lz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 2 15:40:38 23 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0621lz.r - expected 0x1954075670, generated 0x0 15:40:38 23 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0621lz.r - expected 0x41a8, generated 0x0 15:40:38 23 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0621lz.r - skipping 15:40:38 23 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0621lz - skipping 15:40:38 23 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 15:40:38 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0624dz 15:40:38 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x00 15:40:38 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x01 15:40:38 23 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) 15:40:38 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x02 15:40:38 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x03 15:40:38 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x04 15:40:38 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0624dz.r in process_file_group 15:40:38 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 11 15:40:38 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 12 15:40:38 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 13 15:40:38 23 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0624dz.r - expected 0x3356983894, generated 0x764acec6 15:40:38 23 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0624dz.r - expected 0xf2ed, generated 0x9548 15:40:38 23 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0624dz.r - skipping 15:40:38 23 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0624dz - skipping 15:40:38 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0625lz 15:40:38 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0625lz.x00 15:40:38 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0625lz.x01 15:40:38 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0625lz.r in process_file_group 15:40:38 23 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260625.log 15:40:38 23 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 15:40:38 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0625dz 15:40:38 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0625dz.x00 15:40:38 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0625dz.x01 15:40:38 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0625dz.x02 15:40:38 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0625dz.x03 15:40:38 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0625dz.x04 15:40:38 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0625dz.r in process_file_group 15:40:38 23 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [625] 15:40:38 23 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [621, 625] 15:40:39 23 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260625) for profiles 15:40:39 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 15:40:39 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/688) 687 to QC_BAD because CT out of water 15:40:39 23 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.148m) 15:40:39 23 Apr 2017 UTC: INFO: QC.py(365): Changed (5/688) 206 207 310 483 686 to QC_PROBABLY_BAD because raw temperature spikes 15:40:39 23 Apr 2017 UTC: INFO: QC.py(408): Changed (4/688) 69 207 310 483 to QC_PROBABLY_BAD because raw conductivity spikes 15:40:39 23 Apr 2017 UTC: INFO: QC.py(180): Changed (5/688) 206 207 310 483 686 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 15:40:39 23 Apr 2017 UTC: INFO: QC.py(180): Changed (1/688) 69 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 15:40:39 23 Apr 2017 UTC: INFO: QC.py(180): Changed (1/688) 687 to QC_BAD because changed raw cond implies changed raw salinity 15:40:39 23 Apr 2017 UTC: INFO: QC.py(365): Changed (5/688) 206 207 310 483 686 to QC_INTERPOLATED because temperature spikes 15:40:39 23 Apr 2017 UTC: INFO: QC.py(408): Changed (4/688) 69 207 310 483 to QC_INTERPOLATED because conductivity spikes 15:40:39 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/688) 257:261 to QC_BAD because slow apogee CT flow 15:40:39 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/688) 1:6 to QC_BAD because prior to dive start 15:40:39 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/688) 688 to QC_BAD because end of climb 15:40:39 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/688) 1:6 257:261 687 688 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 15:40:39 23 Apr 2017 UTC: INFO: QC.py(180): Changed (13/688) 1:6 257:261 687 688 to QC_BAD because changed corrected salin implies changed speed 15:40:40 23 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 15:40:40 23 Apr 2017 UTC: INFO: QC.py(180): Changed (5/688) 206 207 310 483 686 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 15:40:40 23 Apr 2017 UTC: INFO: QC.py(180): Changed (1/688) 69 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 15:40:40 23 Apr 2017 UTC: INFO: QC.py(180): Changed (5/688) 206 207 310 483 686 to QC_INTERPOLATED because changed corrected temp implies changed speed 15:40:40 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.54 cm/s 15:40:40 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.20 cm/s 15:40:40 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 15:40:40 23 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (206/688) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 15:40:40 23 Apr 2017 UTC: INFO: QC.py(180): Changed (3/688) 206 483 686 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 15:40:40 23 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (206/688) 140 142:145 147:150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 15:40:40 23 Apr 2017 UTC: INFO: QC.py(180): Changed (3/688) 206 483 686 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 15:40:40 23 Apr 2017 UTC: INFO: QC.py(180): Changed (13/688) 1:6 257:261 687 688 to QC_BAD because changed salinity implies changed optode oxygen 15:40:40 23 Apr 2017 UTC: INFO: QC.py(180): Changed (1/688) 69 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 15:40:40 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 15:40:40 23 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 15:40:40 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 15:40:40 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 625: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.89% reduction 15:40:40 23 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.625 15:40:40 23 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 15:40:40 23 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 15:40:40 23 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 15:40:41 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 15:40:41 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 15:46:05 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 15:46:07 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 15:46:07 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 15:47:26 23 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 15:47:26 23 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 15:47:26 23 Apr 2017 UTC: ERROR: Base.py(1960): Dive [621, 624] failed to process completely. The following files were not processed completely: /home/sg626/sg0621lz.r Fragment ./sg0621lz.x00 file size (686) not equal to expected size (4096) - consider resend_dive /l 621 00 /home/sg626/sg0624dz.r Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) - consider resend_dive /d 624 01 Glider logout seen - transmissions from glider complete Consult baselog_170423054017 for details. 15:47:26 23 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 15:47:26 23 Apr 2017 UTC /home/sg626/p6260621.eng /home/sg626/p6260625.log /home/sg626/p6260625.eng /home/sg626/p6260621.asc /home/sg626/p6260625.asc /home/sg626/p6260625.pro /home/sg626/p6260625.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 15:47:26 23 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 15:47:26 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:47:26 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:47:26 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:47:26 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:47:26 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:47:26 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:47:26 23 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:47:26 23 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 15:47:26 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:47:26 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:47:26 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:47:27 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:47:27 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:47:27 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:47:27 23 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:47:27 23 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 15:47:27 23 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 15:47:27 23 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 15:47:27 23 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 15:47:27 23 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 15:47:27 23 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 15:47:27 23 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 15:47:27 23 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 15:47:27 23 Apr 2017 UTC 19:39:20 23 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 25895 19:39:20 23 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {P} 19:44:32 23 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 26182 19:44:32 23 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:44:32 23 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:44:32 23 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:44:32 23 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:44:32 23 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170423094431 ] 19:44:32 23 Apr 2017 UTC: INFO: Base.py(1333): PID:26189 19:44:32 23 Apr 2017 UTC: INFO: Base.py(1375): Started processing 19:44:32 23 Apr 2017 UTC 19:44:32 23 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:44:34 23 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:44:34 23 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:44:34 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:44:34 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:626 calls_made:1 call_cycle:0 19:44:34 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:44:34 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:626 calls_made:1 call_cycle:0 19:44:34 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:44:34 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:626 calls_made:1 call_cycle:0 19:44:34 23 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:626 calls_made:1 call_cycle:0 2233.6930 -15800.7940 04/23/17 19:36:48 UTC) to sdrifter@soest.hawaii.edu 19:44:34 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:626 calls_made:1 call_cycle:0 19:44:34 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:44:34 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:626 calls_made:1 call_cycle:0 19:44:34 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:44:34 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:626 calls_made:1 call_cycle:0 19:44:34 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:44:34 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:626 calls_made:1 call_cycle:0 19:44:34 23 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:44:34 23 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:44:44 23 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:44:46 23 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:44:46 23 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:44:46 23 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:44:46 23 Apr 2017 UTC: INFO: Base.py(743): Processing ./sg0626pz.000 19:44:46 23 Apr 2017 UTC: INFO: Base.py(1593): Processed pdos logfile(s) ['sg0626pz.000'] 19:44:46 23 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:44:52 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0621lz 19:44:52 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621lz.x00 19:44:52 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621lz.x01 19:44:52 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0621lz.r in process_file_group 19:44:52 23 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260621.log 19:44:52 23 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:44:52 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0621dz 19:44:52 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x00 19:44:52 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x01 19:44:52 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x02 19:44:52 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x03 19:44:52 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x04 19:44:52 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0621dz.r in process_file_group 19:44:52 23 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:44:52 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0624dz 19:44:52 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x00 19:44:52 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x01 19:44:52 23 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) 19:44:52 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x02 19:44:52 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x03 19:44:52 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x04 19:44:52 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0624dz.r in process_file_group 19:44:52 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 11 19:44:52 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 12 19:44:52 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 13 19:44:52 23 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0624dz.r - expected 0x3356983894, generated 0x764acec6 19:44:52 23 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0624dz.r - expected 0xf2ed, generated 0x9548 19:44:52 23 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0624dz.r - skipping 19:44:52 23 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0624dz - skipping 19:44:52 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0626lz 19:44:52 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0626lz.x00 19:44:52 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0626lz.x01 19:44:52 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0626lz.r in process_file_group 19:44:52 23 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260626.log 19:44:52 23 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:44:52 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0626dz 19:44:52 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0626dz.x00 19:44:52 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0626dz.x01 19:44:52 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0626dz.x02 19:44:52 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0626dz.x03 19:44:52 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0626dz.x04 19:44:52 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0626dz.r in process_file_group 19:44:53 23 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [621, 626] 19:44:53 23 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [621, 626] 19:44:53 23 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260621) for profiles 19:44:53 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 19:44:54 23 Apr 2017 UTC: INFO: QC.py(365): Changed (2/711) 2 4 to QC_PROBABLY_BAD because raw temperature spikes 19:44:54 23 Apr 2017 UTC: INFO: QC.py(408): Changed (1/711) 217 to QC_PROBABLY_BAD because raw conductivity spikes 19:44:54 23 Apr 2017 UTC: INFO: QC.py(180): Changed (2/711) 2 4 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:44:54 23 Apr 2017 UTC: INFO: QC.py(180): Changed (1/711) 217 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 19:44:54 23 Apr 2017 UTC: INFO: QC.py(365): Changed (2/711) 2 4 to QC_INTERPOLATED because temperature spikes 19:44:54 23 Apr 2017 UTC: INFO: QC.py(408): Changed (1/711) 217 to QC_INTERPOLATED because conductivity spikes 19:44:54 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/711) 266:270 to QC_BAD because slow apogee CT flow 19:44:54 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/711) 1:6 to QC_BAD because prior to dive start 19:44:54 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/711) 1:6 266:270 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:44:54 23 Apr 2017 UTC: INFO: QC.py(180): Changed (11/711) 1:6 266:270 to QC_BAD because changed corrected salin implies changed speed 19:44:54 23 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:44:54 23 Apr 2017 UTC: INFO: QC.py(180): Changed (1/711) 217 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 19:44:54 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.07 cm/s 19:44:54 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.66 cm/s 19:44:54 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:44:54 23 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (206/711) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:44:54 23 Apr 2017 UTC: INFO: QC.py(180): Changed (2/711) 2 4 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 19:44:54 23 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (206/711) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 19:44:54 23 Apr 2017 UTC: INFO: QC.py(180): Changed (2/711) 2 4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 19:44:54 23 Apr 2017 UTC: INFO: QC.py(180): Changed (11/711) 1:6 266:270 to QC_BAD because changed salinity implies changed optode oxygen 19:44:54 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:44:54 23 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:44:54 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 19:44:55 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 621: Data set size for profile, binned and kkyy files reduced by 11 points, a 1.55% reduction 19:44:55 23 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260626) for profiles 19:44:55 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 19:44:55 23 Apr 2017 UTC: INFO: QC.py(365): Changed (2/723) 2 85 to QC_PROBABLY_BAD because raw temperature spikes 19:44:55 23 Apr 2017 UTC: INFO: QC.py(408): Changed (1/723) 85 to QC_PROBABLY_BAD because raw conductivity spikes 19:44:55 23 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <246 pt uncorrectable 971.4m SUSPECT weak conductivity anomaly n:-0.26 p:0.25> 19:44:55 23 Apr 2017 UTC: INFO: QC.py(180): Changed (2/723) 2 85 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:44:55 23 Apr 2017 UTC: INFO: QC.py(365): Changed (2/723) 2 85 to QC_INTERPOLATED because temperature spikes 19:44:55 23 Apr 2017 UTC: INFO: QC.py(408): Changed (1/723) 85 to QC_INTERPOLATED because conductivity spikes 19:44:55 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/723) 273:278 to QC_BAD because slow apogee CT flow 19:44:55 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/723) 1:6 to QC_BAD because prior to dive start 19:44:55 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/723) 1:6 273:278 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:44:55 23 Apr 2017 UTC: INFO: QC.py(180): Changed (12/723) 1:6 273:278 to QC_BAD because changed corrected salin implies changed speed 19:44:56 23 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:44:56 23 Apr 2017 UTC: INFO: QC.py(180): Changed (1/723) 85 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 19:44:56 23 Apr 2017 UTC: INFO: QC.py(180): Changed (1/723) 85 to QC_INTERPOLATED because changed corrected temp implies changed speed 19:44:56 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.89 cm/s 19:44:56 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.46 cm/s 19:44:56 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:44:56 23 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (204/723) 153:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:44:56 23 Apr 2017 UTC: INFO: QC.py(180): Changed (2/723) 2 85 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 19:44:56 23 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (204/723) 153:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 19:44:56 23 Apr 2017 UTC: INFO: QC.py(180): Changed (2/723) 2 85 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 19:44:56 23 Apr 2017 UTC: INFO: QC.py(180): Changed (12/723) 1:6 273:278 to QC_BAD because changed salinity implies changed optode oxygen 19:44:56 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:44:56 23 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 19:44:56 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 626: Data set size for profile, binned and kkyy files reduced by 12 points, a 1.66% reduction 19:44:56 23 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.626 19:44:56 23 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./pdoscmds.bat to ./pdoscmds.bat.626 19:44:56 23 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:44:56 23 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:44:56 23 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:44:57 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 19:44:57 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 19:50:23 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 19:50:25 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 19:50:25 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 19:51:44 23 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:51:44 23 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:51:44 23 Apr 2017 UTC: ERROR: Base.py(1960): Dive [624] failed to process completely. The following files were not processed completely: /home/sg626/sg0624dz.r Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) - consider resend_dive /d 624 01 Glider logout seen - transmissions from glider complete Consult baselog_170423094431 for details. 19:51:44 23 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:51:44 23 Apr 2017 UTC /home/sg626/p6260621.log /home/sg626/p6260621.eng /home/sg626/p6260626.log /home/sg626/p6260626.eng /home/sg626/p6260621.asc /home/sg626/p6260626.asc /home/sg626/p6260621.pro /home/sg626/p6260621.nc /home/sg626/p6260626.pro /home/sg626/p6260626.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 19:51:44 23 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:51:44 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:51:44 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:51:44 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:51:44 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:51:44 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:51:44 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:51:44 23 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:51:44 23 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:51:44 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:51:44 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:51:44 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:51:44 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:51:44 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:51:44 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:51:45 23 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:51:45 23 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:51:45 23 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:51:45 23 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:51:45 23 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:51:45 23 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:51:45 23 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:51:45 23 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:51:45 23 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 19:51:45 23 Apr 2017 UTC 23:44:00 23 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 3080 23:44:00 23 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {P} 23:46:33 23 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 3215 23:46:33 23 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:46:33 23 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:46:33 23 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:46:33 23 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:46:33 23 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170423134633 ] 23:46:33 23 Apr 2017 UTC: INFO: Base.py(1333): PID:3222 23:46:33 23 Apr 2017 UTC: INFO: Base.py(1375): Started processing 23:46:33 23 Apr 2017 UTC 23:46:33 23 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:46:35 23 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:46:35 23 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:46:35 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:46:35 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:627 calls_made:1 call_cycle:0 23:46:35 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:46:35 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:627 calls_made:1 call_cycle:0 23:46:35 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:46:35 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:627 calls_made:1 call_cycle:0 23:46:35 23 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:627 calls_made:1 call_cycle:0 2234.0440 -15801.0780 04/23/17 23:41:30 UTC) to sdrifter@soest.hawaii.edu 23:46:35 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:627 calls_made:1 call_cycle:0 23:46:35 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:46:35 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:627 calls_made:1 call_cycle:0 23:46:35 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:46:35 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:627 calls_made:1 call_cycle:0 23:46:35 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:46:35 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:627 calls_made:1 call_cycle:0 23:46:35 23 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:46:35 23 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:46:45 23 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:46:47 23 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:46:47 23 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:46:47 23 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:46:47 23 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:46:47 23 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:46:53 23 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:46:53 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0624dz 23:46:53 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x00 23:46:53 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x01 23:46:53 23 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) 23:46:53 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x02 23:46:53 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x03 23:46:53 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x04 23:46:53 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0624dz.r in process_file_group 23:46:53 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 11 23:46:53 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 12 23:46:53 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 13 23:46:53 23 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0624dz.r - expected 0x3356983894, generated 0x764acec6 23:46:53 23 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0624dz.r - expected 0xf2ed, generated 0x9548 23:46:53 23 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0624dz.r - skipping 23:46:53 23 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0624dz - skipping 23:46:53 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0627lz 23:46:53 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627lz.x00 23:46:53 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627lz.x01 23:46:53 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0627lz.r in process_file_group 23:46:53 23 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260627.log 23:46:53 23 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:46:53 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0627dz 23:46:53 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x00 23:46:53 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0627dz.r in process_file_group 23:46:53 23 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0627dz.r - expected 0x3054066448, generated 0x264a724a 23:46:53 23 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0627dz.r - expected 0x9175804a, generated 0xcd6 23:46:53 23 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0627dz.r - skipping 23:46:53 23 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0627dz - skipping 23:46:53 23 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 23:46:54 23 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [627] 23:46:54 23 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 23:46:54 23 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.627 23:46:54 23 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./pdoscmds.bat to ./pdoscmds.bat.627 23:46:54 23 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:46:54 23 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:46:54 23 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:46:54 23 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:46:54 23 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:46:54 23 Apr 2017 UTC: ERROR: Base.py(1960): Dive [624, 627] failed to process completely. The following files were not processed completely: /home/sg626/sg0624dz.r Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) - consider resend_dive /d 624 01 /home/sg626/sg0627dz.r Glider logout seen - transmissions from glider complete Consult baselog_170423134633 for details. 23:46:54 23 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:46:54 23 Apr 2017 UTC /home/sg626/p6260627.log 23:46:54 23 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:46:54 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:46:54 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:46:54 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:46:54 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:46:54 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:46:54 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:46:54 23 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:46:54 23 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:46:54 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:46:54 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:46:54 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:46:54 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:46:54 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:46:54 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:46:54 23 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:46:54 23 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:46:54 23 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:46:54 23 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:46:54 23 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:46:54 23 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:46:54 23 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:46:54 23 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:46:54 23 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 23:46:54 23 Apr 2017 UTC 23:49:05 23 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 3497 23:49:05 23 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {P} 23:53:06 23 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 3819 23:53:06 23 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:53:06 23 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:53:06 23 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:53:06 23 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:53:06 23 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170423135305 ] 23:53:06 23 Apr 2017 UTC: INFO: Base.py(1333): PID:3827 23:53:06 23 Apr 2017 UTC: INFO: Base.py(1375): Started processing 23:53:06 23 Apr 2017 UTC 23:53:06 23 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:53:07 23 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:53:07 23 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:53:07 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:53:07 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:627 calls_made:2 call_cycle:0 23:53:07 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:53:07 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:627 calls_made:2 call_cycle:0 23:53:07 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:53:07 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:627 calls_made:2 call_cycle:0 23:53:07 23 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:627 calls_made:2 call_cycle:0 2234.0440 -15801.0780 04/23/17 23:41:30 UTC) to sdrifter@soest.hawaii.edu 23:53:08 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:627 calls_made:2 call_cycle:0 23:53:08 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:53:08 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:627 calls_made:2 call_cycle:0 23:53:08 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:53:08 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:627 calls_made:2 call_cycle:0 23:53:08 23 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:53:08 23 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:627 calls_made:2 call_cycle:0 23:53:08 23 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:53:08 23 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:53:18 23 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:53:20 23 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:53:20 23 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:53:20 23 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:53:20 23 Apr 2017 UTC: INFO: Base.py(743): Processing ./sg0627pz.000 23:53:20 23 Apr 2017 UTC: INFO: Base.py(1593): Processed pdos logfile(s) ['sg0627pz.000'] 23:53:20 23 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:53:26 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0621lz 23:53:26 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621lz.x00 23:53:26 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621lz.x01 23:53:26 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0621lz.r in process_file_group 23:53:26 23 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260621.log 23:53:26 23 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:53:26 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0621dz 23:53:26 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x00 23:53:26 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x01 23:53:26 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x02 23:53:26 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x03 23:53:26 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0621dz.x04 23:53:26 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0621dz.r in process_file_group 23:53:26 23 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:53:26 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0624dz 23:53:26 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x00 23:53:26 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x01 23:53:26 23 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) 23:53:26 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x02 23:53:26 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x03 23:53:26 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x04 23:53:26 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0624dz.r in process_file_group 23:53:26 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 11 23:53:26 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 12 23:53:26 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 13 23:53:26 23 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0624dz.r - expected 0x3356983894, generated 0x764acec6 23:53:26 23 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0624dz.r - expected 0xf2ed, generated 0x9548 23:53:26 23 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0624dz.r - skipping 23:53:26 23 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0624dz - skipping 23:53:26 23 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:53:26 23 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0627dz 23:53:26 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x00 23:53:26 23 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0627dz.x00 file size (1453) not equal to expected size (4096) 23:53:26 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x01 23:53:26 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x02 23:53:26 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x03 23:53:26 23 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x04 23:53:26 23 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0627dz.r in process_file_group 23:53:26 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 1 23:53:26 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 2 23:53:26 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 3 23:53:26 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 4 23:53:26 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 5 23:53:26 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 6 23:53:26 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 7 23:53:26 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 8 23:53:26 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 9 23:53:26 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 10 23:53:26 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 11 23:53:26 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 12 23:53:26 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 13 23:53:26 23 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 14 23:53:26 23 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0627dz.r - expected 0x7468771, generated 0x34a5275b 23:53:26 23 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0627dz.r - expected 0xf9e5, generated 0x825 23:53:26 23 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0627dz.r - skipping 23:53:26 23 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0627dz - skipping 23:53:26 23 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [621] 23:53:26 23 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [621] 23:53:26 23 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260621) for profiles 23:53:26 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 23:53:27 23 Apr 2017 UTC: INFO: QC.py(365): Changed (2/711) 2 4 to QC_PROBABLY_BAD because raw temperature spikes 23:53:27 23 Apr 2017 UTC: INFO: QC.py(408): Changed (1/711) 217 to QC_PROBABLY_BAD because raw conductivity spikes 23:53:27 23 Apr 2017 UTC: INFO: QC.py(180): Changed (2/711) 2 4 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 23:53:27 23 Apr 2017 UTC: INFO: QC.py(180): Changed (1/711) 217 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 23:53:27 23 Apr 2017 UTC: INFO: QC.py(365): Changed (2/711) 2 4 to QC_INTERPOLATED because temperature spikes 23:53:27 23 Apr 2017 UTC: INFO: QC.py(408): Changed (1/711) 217 to QC_INTERPOLATED because conductivity spikes 23:53:27 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/711) 266:270 to QC_BAD because slow apogee CT flow 23:53:27 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/711) 1:6 to QC_BAD because prior to dive start 23:53:27 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/711) 1:6 266:270 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 23:53:27 23 Apr 2017 UTC: INFO: QC.py(180): Changed (11/711) 1:6 266:270 to QC_BAD because changed corrected salin implies changed speed 23:53:27 23 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 23:53:27 23 Apr 2017 UTC: INFO: QC.py(180): Changed (1/711) 217 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 23:53:27 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.07 cm/s 23:53:27 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.66 cm/s 23:53:27 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 23:53:27 23 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (206/711) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 23:53:27 23 Apr 2017 UTC: INFO: QC.py(180): Changed (2/711) 2 4 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 23:53:27 23 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (206/711) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 23:53:27 23 Apr 2017 UTC: INFO: QC.py(180): Changed (2/711) 2 4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 23:53:27 23 Apr 2017 UTC: INFO: QC.py(180): Changed (11/711) 1:6 266:270 to QC_BAD because changed salinity implies changed optode oxygen 23:53:27 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 23:53:27 23 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 23:53:27 23 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 23:53:28 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 621: Data set size for profile, binned and kkyy files reduced by 11 points, a 1.55% reduction 23:53:28 23 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.627 23:53:28 23 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./pdoscmds.bat to ./pdoscmds.bat.627 23:53:28 23 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:53:28 23 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:53:28 23 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:53:28 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 23:53:28 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 23:58:53 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 23:58:55 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 23:58:55 23 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 00:00:15 24 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:00:15 24 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:00:15 24 Apr 2017 UTC: ERROR: Base.py(1960): Dive [624, 627] failed to process completely. The following files were not processed completely: /home/sg626/sg0624dz.r Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) - consider resend_dive /d 624 01 /home/sg626/sg0627dz.r Fragment ./sg0627dz.x00 file size (1453) not equal to expected size (4096) - consider resend_dive /d 627 00 Glider logout seen - transmissions from glider complete Consult baselog_170423135305 for details. 00:00:15 24 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:00:15 24 Apr 2017 UTC /home/sg626/p6260621.log /home/sg626/p6260621.eng /home/sg626/p6260621.asc /home/sg626/p6260621.pro /home/sg626/p6260621.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 00:00:15 24 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:00:15 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:00:15 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:00:15 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:00:15 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:00:15 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:00:15 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:00:15 24 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:00:15 24 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:00:15 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:00:15 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:00:15 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:00:16 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:00:16 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:00:16 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:00:16 24 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:00:16 24 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:00:16 24 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:00:16 24 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:00:16 24 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:00:16 24 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:00:16 24 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:00:16 24 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:00:16 24 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 00:00:16 24 Apr 2017 UTC 03:51:17 24 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 12364 03:51:17 24 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:52:29 24 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 12458 03:52:29 24 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:52:29 24 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:52:29 24 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:52:29 24 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:52:29 24 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170423175228 ] 03:52:29 24 Apr 2017 UTC: INFO: Base.py(1333): PID:12465 03:52:29 24 Apr 2017 UTC: INFO: Base.py(1375): Started processing 03:52:29 24 Apr 2017 UTC 03:52:29 24 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:52:31 24 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:52:31 24 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:52:31 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:52:31 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:628 calls_made:2 call_cycle:0 03:52:31 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:52:31 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:628 calls_made:2 call_cycle:0 03:52:31 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:52:31 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:628 calls_made:2 call_cycle:0 03:52:31 24 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:628 calls_made:2 call_cycle:0 2233.9730 -15800.9710 04/24/17 03:46:31 UTC) to sdrifter@soest.hawaii.edu 03:52:31 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:628 calls_made:2 call_cycle:0 03:52:31 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:52:31 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:628 calls_made:2 call_cycle:0 03:52:31 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:52:31 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:628 calls_made:2 call_cycle:0 03:52:31 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:52:31 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:628 calls_made:2 call_cycle:0 03:52:31 24 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:52:31 24 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:52:41 24 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:52:43 24 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:52:43 24 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:52:43 24 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:52:43 24 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:52:43 24 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:52:49 24 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:52:49 24 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0624dz 03:52:49 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x00 03:52:49 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x01 03:52:49 24 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) 03:52:49 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x02 03:52:49 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x03 03:52:49 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x04 03:52:49 24 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0624dz.r in process_file_group 03:52:49 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 11 03:52:49 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 12 03:52:49 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 13 03:52:49 24 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0624dz.r - expected 0x3356983894, generated 0x764acec6 03:52:49 24 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0624dz.r - expected 0xf2ed, generated 0x9548 03:52:49 24 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0624dz.r - skipping 03:52:49 24 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0624dz - skipping 03:52:49 24 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:52:49 24 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0627dz 03:52:49 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x00 03:52:49 24 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0627dz.x00 file size (1453) not equal to expected size (4096) 03:52:49 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x01 03:52:49 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x02 03:52:49 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x03 03:52:49 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x04 03:52:49 24 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0627dz.r in process_file_group 03:52:49 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 1 03:52:49 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 2 03:52:49 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 3 03:52:49 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 4 03:52:49 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 5 03:52:49 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 6 03:52:49 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 7 03:52:49 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 8 03:52:49 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 9 03:52:49 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 10 03:52:49 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 11 03:52:49 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 12 03:52:49 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 13 03:52:49 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 14 03:52:49 24 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0627dz.r - expected 0x7468771, generated 0x34a5275b 03:52:49 24 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0627dz.r - expected 0xf9e5, generated 0x825 03:52:49 24 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0627dz.r - skipping 03:52:49 24 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0627dz - skipping 03:52:49 24 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0628lz 03:52:49 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0628lz.x00 03:52:49 24 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0628lz.r in process_file_group 03:52:49 24 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0628lz.r - expected 0x2242593881, generated 0xc833c8fa 03:52:49 24 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0628lz.r - expected 0x8f15fdcf, generated 0x7a1 03:52:49 24 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0628lz.r - skipping 03:52:49 24 Apr 2017 UTC: ERROR: Base.py(243): Could not process sg0628lz - skipping 03:52:49 24 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:52:49 24 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0628lz 03:52:49 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0628lz.x00 03:52:49 24 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0628lz.r in process_file_group 03:52:49 24 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0628lz.r - expected 0x2242593881, generated 0xc833c8fa 03:52:49 24 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0628lz.r - expected 0x8f15fdcf, generated 0x7a1 03:52:49 24 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0628lz.r - skipping 03:52:49 24 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0628lz - skipping 03:52:49 24 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 03:52:49 24 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 03:52:49 24 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 03:52:49 24 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.628 03:52:49 24 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:52:49 24 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:52:49 24 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:52:50 24 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:52:50 24 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:52:50 24 Apr 2017 UTC: ERROR: Base.py(1960): Dive [624, 627, 628] failed to process completely. The following files were not processed completely: /home/sg626/sg0624dz.r Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) - consider resend_dive /d 624 01 /home/sg626/sg0627dz.r Fragment ./sg0627dz.x00 file size (1453) not equal to expected size (4096) - consider resend_dive /d 627 00 /home/sg626/sg0628lz.r Glider logout not seen - retransmissions from glider possible Consult baselog_170423175228 for details. 03:52:50 24 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:52:50 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:52:50 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:52:50 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:52:50 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:52:50 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:52:50 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:52:50 24 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:52:50 24 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:52:50 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:52:50 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:52:50 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:52:50 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:52:50 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:52:50 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:52:50 24 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:52:50 24 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:52:50 24 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:52:50 24 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:52:50 24 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:52:50 24 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:52:50 24 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:52:50 24 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:52:50 24 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 03:52:50 24 Apr 2017 UTC 03:54:49 24 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 12714 03:54:49 24 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:57:59 24 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 12836 03:57:59 24 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:57:59 24 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:57:59 24 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:57:59 24 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:57:59 24 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170423175758 ] 03:57:59 24 Apr 2017 UTC: INFO: Base.py(1333): PID:12844 03:57:59 24 Apr 2017 UTC: INFO: Base.py(1375): Started processing 03:57:59 24 Apr 2017 UTC 03:57:59 24 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:58:01 24 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:58:01 24 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:58:01 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:58:01 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:628 calls_made:3 call_cycle:0 03:58:01 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:58:01 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:628 calls_made:3 call_cycle:0 03:58:01 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:58:01 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:628 calls_made:3 call_cycle:0 03:58:01 24 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:628 calls_made:3 call_cycle:0 2233.9730 -15800.9710 04/24/17 03:46:31 UTC) to sdrifter@soest.hawaii.edu 03:58:01 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:628 calls_made:3 call_cycle:0 03:58:01 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:58:01 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:628 calls_made:3 call_cycle:0 03:58:01 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:58:01 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:628 calls_made:3 call_cycle:0 03:58:01 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:58:01 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:628 calls_made:3 call_cycle:0 03:58:01 24 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:58:01 24 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:58:11 24 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:58:13 24 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:58:13 24 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:58:13 24 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:58:13 24 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:58:13 24 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:58:19 24 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:58:19 24 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0624dz 03:58:19 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x00 03:58:19 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x01 03:58:19 24 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) 03:58:19 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x02 03:58:19 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x03 03:58:19 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x04 03:58:19 24 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0624dz.r in process_file_group 03:58:19 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 11 03:58:19 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 12 03:58:19 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 13 03:58:19 24 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0624dz.r - expected 0x3356983894, generated 0x764acec6 03:58:19 24 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0624dz.r - expected 0xf2ed, generated 0x9548 03:58:19 24 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0624dz.r - skipping 03:58:19 24 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0624dz - skipping 03:58:19 24 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:58:19 24 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0627dz 03:58:19 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x00 03:58:19 24 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0627dz.x00 file size (1453) not equal to expected size (4096) 03:58:19 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x01 03:58:19 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x02 03:58:19 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x03 03:58:19 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x04 03:58:19 24 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0627dz.r in process_file_group 03:58:19 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 1 03:58:19 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 2 03:58:19 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 3 03:58:19 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 4 03:58:19 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 5 03:58:19 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 6 03:58:19 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 7 03:58:19 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 8 03:58:19 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 9 03:58:19 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 10 03:58:19 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 11 03:58:19 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 12 03:58:19 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 13 03:58:19 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 14 03:58:19 24 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0627dz.r - expected 0x7468771, generated 0x34a5275b 03:58:19 24 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0627dz.r - expected 0xf9e5, generated 0x825 03:58:19 24 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0627dz.r - skipping 03:58:19 24 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0627dz - skipping 03:58:19 24 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0628lz 03:58:19 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0628lz.x00 03:58:19 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0628lz.x01 03:58:19 24 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0628lz.r in process_file_group 03:58:19 24 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260628.log 03:58:19 24 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:58:19 24 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0628dz 03:58:19 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0628dz.x00 03:58:19 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0628dz.x01 03:58:19 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0628dz.x02 03:58:19 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0628dz.x03 03:58:19 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0628dz.x04 03:58:19 24 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0628dz.r in process_file_group 03:58:19 24 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [628] 03:58:19 24 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [628] 03:58:20 24 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260628) for profiles 03:58:20 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 03:58:20 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/685) 684 685 to QC_BAD because CT out of water 03:58:20 24 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.074m) 03:58:20 24 Apr 2017 UTC: INFO: QC.py(365): Changed (1/685) 2 to QC_PROBABLY_BAD because raw temperature spikes 03:58:20 24 Apr 2017 UTC: INFO: QC.py(180): Changed (1/685) 2 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 03:58:20 24 Apr 2017 UTC: INFO: QC.py(180): Changed (2/685) 684 685 to QC_BAD because changed raw cond implies changed raw salinity 03:58:20 24 Apr 2017 UTC: INFO: QC.py(365): Changed (1/685) 2 to QC_INTERPOLATED because temperature spikes 03:58:20 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/685) 280:284 to QC_BAD because slow apogee CT flow 03:58:20 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/685) 1:6 to QC_BAD because prior to dive start 03:58:20 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/685) 1:6 280:284 684 685 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:58:20 24 Apr 2017 UTC: INFO: QC.py(180): Changed (13/685) 1:6 280:284 684 685 to QC_BAD because changed corrected salin implies changed speed 03:58:21 24 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 03:58:21 24 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 628 interp_salinity data_points in_between 395 418 % suspect thermal-inertia points 408 03:58:21 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.46 cm/s 03:58:21 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.51 cm/s 03:58:21 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:58:21 24 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (212/685) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:58:21 24 Apr 2017 UTC: INFO: QC.py(180): Changed (1/685) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:58:21 24 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (212/685) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 03:58:21 24 Apr 2017 UTC: INFO: QC.py(180): Changed (1/685) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 03:58:21 24 Apr 2017 UTC: INFO: QC.py(180): Changed (13/685) 1:6 280:284 684 685 to QC_BAD because changed salinity implies changed optode oxygen 03:58:21 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:58:21 24 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:58:21 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 03:58:21 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 628: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.90% reduction 03:58:21 24 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.628 03:58:21 24 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:58:21 24 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:58:21 24 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:58:22 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 03:58:22 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 04:03:48 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 04:03:50 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 04:03:50 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 04:05:10 24 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:05:10 24 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:05:10 24 Apr 2017 UTC: ERROR: Base.py(1960): Dive [624, 627] failed to process completely. The following files were not processed completely: /home/sg626/sg0624dz.r Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) - consider resend_dive /d 624 01 /home/sg626/sg0627dz.r Fragment ./sg0627dz.x00 file size (1453) not equal to expected size (4096) - consider resend_dive /d 627 00 Glider logout seen - transmissions from glider complete Consult baselog_170423175758 for details. 04:05:10 24 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:05:10 24 Apr 2017 UTC /home/sg626/p6260628.log /home/sg626/p6260628.eng /home/sg626/p6260628.asc /home/sg626/p6260628.pro /home/sg626/p6260628.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 04:05:10 24 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:05:10 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:05:10 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:05:10 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:05:10 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:05:10 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:05:10 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:05:10 24 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:05:10 24 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:05:10 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:05:10 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:05:10 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:05:10 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:05:10 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:05:10 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:05:10 24 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:05:10 24 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:05:10 24 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:05:10 24 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:05:10 24 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:05:10 24 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:05:10 24 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:05:10 24 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:05:10 24 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 04:05:10 24 Apr 2017 UTC 08:02:32 24 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 20547 08:02:32 24 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:05:54 24 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 20670 08:05:54 24 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:05:54 24 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:05:54 24 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:05:54 24 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:05:54 24 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170423220553 ] 08:05:54 24 Apr 2017 UTC: INFO: Base.py(1333): PID:20677 08:05:54 24 Apr 2017 UTC: INFO: Base.py(1375): Started processing 08:05:54 24 Apr 2017 UTC 08:05:54 24 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:05:56 24 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:05:56 24 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:05:56 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:05:56 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:629 calls_made:1 call_cycle:0 08:05:56 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:05:56 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:629 calls_made:1 call_cycle:0 08:05:56 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:05:56 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:629 calls_made:1 call_cycle:0 08:05:56 24 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:629 calls_made:1 call_cycle:0 2234.0300 -15800.8270 04/24/17 08:00:01 UTC) to sdrifter@soest.hawaii.edu 08:05:56 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:629 calls_made:1 call_cycle:0 08:05:56 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:05:56 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:629 calls_made:1 call_cycle:0 08:05:56 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:05:56 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:629 calls_made:1 call_cycle:0 08:05:56 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:05:56 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:629 calls_made:1 call_cycle:0 08:05:56 24 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:05:56 24 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:06:06 24 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:06:08 24 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:06:08 24 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:06:08 24 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:06:08 24 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:06:08 24 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:06:14 24 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:06:14 24 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0624dz 08:06:14 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x00 08:06:14 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x01 08:06:14 24 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) 08:06:14 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x02 08:06:14 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x03 08:06:14 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x04 08:06:14 24 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0624dz.r in process_file_group 08:06:14 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 11 08:06:14 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 12 08:06:14 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 13 08:06:14 24 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0624dz.r - expected 0x3356983894, generated 0x764acec6 08:06:14 24 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0624dz.r - expected 0xf2ed, generated 0x9548 08:06:14 24 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0624dz.r - skipping 08:06:14 24 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0624dz - skipping 08:06:14 24 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:06:14 24 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0627dz 08:06:14 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x00 08:06:14 24 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0627dz.x00 file size (1453) not equal to expected size (4096) 08:06:14 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x01 08:06:14 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x02 08:06:14 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x03 08:06:14 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x04 08:06:14 24 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0627dz.r in process_file_group 08:06:14 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 1 08:06:14 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 2 08:06:14 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 3 08:06:14 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 4 08:06:14 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 5 08:06:14 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 6 08:06:14 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 7 08:06:14 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 8 08:06:14 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 9 08:06:14 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 10 08:06:14 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 11 08:06:14 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 12 08:06:14 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 13 08:06:14 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 14 08:06:14 24 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0627dz.r - expected 0x7468771, generated 0x34a5275b 08:06:14 24 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0627dz.r - expected 0xf9e5, generated 0x825 08:06:14 24 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0627dz.r - skipping 08:06:14 24 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0627dz - skipping 08:06:14 24 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0629lz 08:06:14 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0629lz.x00 08:06:14 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0629lz.x01 08:06:14 24 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0629lz.r in process_file_group 08:06:14 24 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260629.log 08:06:14 24 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:06:14 24 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0629dz 08:06:14 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0629dz.x00 08:06:14 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0629dz.x01 08:06:14 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0629dz.x02 08:06:14 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0629dz.x03 08:06:14 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0629dz.x04 08:06:14 24 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0629dz.r in process_file_group 08:06:15 24 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [629] 08:06:15 24 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [629] 08:06:15 24 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260629) for profiles 08:06:15 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:06:15 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/731) 730 731 to QC_BAD because CT out of water 08:06:15 24 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.066m) 08:06:15 24 Apr 2017 UTC: INFO: QC.py(365): Changed (2/731) 2 298 to QC_PROBABLY_BAD because raw temperature spikes 08:06:15 24 Apr 2017 UTC: INFO: QC.py(377): Changed (1/731) 731 to QC_BAD because raw salinity below bound 08:06:15 24 Apr 2017 UTC: INFO: QC.py(408): Changed (1/731) 298 to QC_PROBABLY_BAD because raw conductivity spikes 08:06:15 24 Apr 2017 UTC: INFO: QC.py(180): Changed (2/731) 2 298 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:06:15 24 Apr 2017 UTC: INFO: QC.py(180): Changed (1/731) 730 to QC_BAD because changed raw cond implies changed raw salinity 08:06:15 24 Apr 2017 UTC: INFO: QC.py(365): Changed (2/731) 2 298 to QC_INTERPOLATED because temperature spikes 08:06:15 24 Apr 2017 UTC: INFO: QC.py(377): Changed (1/731) 731 to QC_BAD because salinity below bound 08:06:15 24 Apr 2017 UTC: INFO: QC.py(408): Changed (1/731) 298 to QC_INTERPOLATED because conductivity spikes 08:06:15 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/731) 287:291 to QC_BAD because slow apogee CT flow 08:06:15 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/731) 1:6 to QC_BAD because prior to dive start 08:06:15 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/731) 729 to QC_BAD because end of climb 08:06:15 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/731) 1:6 287:291 729:731 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:06:15 24 Apr 2017 UTC: INFO: QC.py(180): Changed (14/731) 1:6 287:291 729:731 to QC_BAD because changed corrected salin implies changed speed 08:06:16 24 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:06:16 24 Apr 2017 UTC: INFO: QC.py(180): Changed (1/731) 298 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 08:06:16 24 Apr 2017 UTC: INFO: QC.py(180): Changed (1/731) 298 to QC_INTERPOLATED because changed corrected temp implies changed speed 08:06:16 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.58 cm/s 08:06:16 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.53 cm/s 08:06:16 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:06:16 24 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (212/731) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:06:16 24 Apr 2017 UTC: INFO: QC.py(180): Changed (1/731) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:06:16 24 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (212/731) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:06:16 24 Apr 2017 UTC: INFO: QC.py(180): Changed (1/731) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:06:16 24 Apr 2017 UTC: INFO: QC.py(180): Changed (14/731) 1:6 287:291 729:731 to QC_BAD because changed salinity implies changed optode oxygen 08:06:16 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:06:16 24 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:06:16 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 08:06:16 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 629: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.92% reduction 08:06:16 24 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.629 08:06:16 24 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:06:16 24 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:06:16 24 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:06:17 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 08:06:17 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 08:11:42 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 08:11:43 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 08:11:43 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 08:13:03 24 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:13:03 24 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:13:03 24 Apr 2017 UTC: ERROR: Base.py(1960): Dive [624, 627] failed to process completely. The following files were not processed completely: /home/sg626/sg0624dz.r Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) - consider resend_dive /d 624 01 /home/sg626/sg0627dz.r Fragment ./sg0627dz.x00 file size (1453) not equal to expected size (4096) - consider resend_dive /d 627 00 Glider logout seen - transmissions from glider complete Consult baselog_170423220553 for details. 08:13:03 24 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:13:03 24 Apr 2017 UTC /home/sg626/p6260629.log /home/sg626/p6260629.eng /home/sg626/p6260629.asc /home/sg626/p6260629.pro /home/sg626/p6260629.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 08:13:03 24 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:13:03 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:13:03 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:13:03 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:13:03 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:13:03 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:13:03 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:13:03 24 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:13:03 24 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:13:03 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:13:03 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:13:03 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:13:03 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:13:03 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:13:03 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:13:03 24 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:13:03 24 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:13:03 24 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:13:03 24 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:13:03 24 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:13:03 24 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:13:03 24 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:13:03 24 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:13:03 24 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 08:13:03 24 Apr 2017 UTC 12:05:02 24 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 28451 12:05:02 24 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:08:29 24 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 28574 12:08:29 24 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:08:29 24 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:08:29 24 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:08:29 24 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:08:29 24 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170424020829 ] 12:08:29 24 Apr 2017 UTC: INFO: Base.py(1333): PID:28582 12:08:29 24 Apr 2017 UTC: INFO: Base.py(1375): Started processing 12:08:29 24 Apr 2017 UTC 12:08:29 24 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:08:31 24 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:08:31 24 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:08:31 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:08:31 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:630 calls_made:1 call_cycle:0 12:08:31 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:08:31 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:630 calls_made:1 call_cycle:0 12:08:31 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:08:31 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:630 calls_made:1 call_cycle:0 12:08:31 24 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:630 calls_made:1 call_cycle:0 2234.1270 -15800.7280 04/24/17 12:02:30 UTC) to sdrifter@soest.hawaii.edu 12:08:36 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:630 calls_made:1 call_cycle:0 12:08:36 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:08:36 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:630 calls_made:1 call_cycle:0 12:08:36 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:08:36 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:630 calls_made:1 call_cycle:0 12:08:36 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:08:36 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:630 calls_made:1 call_cycle:0 12:08:36 24 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:08:36 24 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:08:46 24 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:08:48 24 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:08:48 24 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:08:48 24 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:08:48 24 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:08:48 24 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:08:54 24 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:08:54 24 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0624dz 12:08:54 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x00 12:08:54 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x01 12:08:54 24 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) 12:08:54 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x02 12:08:54 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x03 12:08:54 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x04 12:08:54 24 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0624dz.r in process_file_group 12:08:54 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 11 12:08:54 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 12 12:08:54 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 13 12:08:54 24 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0624dz.r - expected 0x3356983894, generated 0x764acec6 12:08:54 24 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0624dz.r - expected 0xf2ed, generated 0x9548 12:08:54 24 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0624dz.r - skipping 12:08:54 24 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0624dz - skipping 12:08:54 24 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:08:54 24 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0627dz 12:08:54 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x00 12:08:54 24 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0627dz.x00 file size (1453) not equal to expected size (4096) 12:08:54 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x01 12:08:54 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x02 12:08:54 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x03 12:08:54 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x04 12:08:54 24 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0627dz.r in process_file_group 12:08:54 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 1 12:08:54 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 2 12:08:54 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 3 12:08:54 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 4 12:08:54 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 5 12:08:54 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 6 12:08:54 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 7 12:08:54 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 8 12:08:54 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 9 12:08:54 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 10 12:08:54 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 11 12:08:54 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 12 12:08:54 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 13 12:08:54 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 14 12:08:54 24 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0627dz.r - expected 0x7468771, generated 0x34a5275b 12:08:54 24 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0627dz.r - expected 0xf9e5, generated 0x825 12:08:54 24 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0627dz.r - skipping 12:08:54 24 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0627dz - skipping 12:08:54 24 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0630lz 12:08:54 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0630lz.x00 12:08:54 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0630lz.x01 12:08:54 24 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0630lz.r in process_file_group 12:08:54 24 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260630.log 12:08:54 24 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:08:54 24 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0630dz 12:08:54 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0630dz.x00 12:08:54 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0630dz.x01 12:08:54 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0630dz.x02 12:08:54 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0630dz.x03 12:08:54 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0630dz.x04 12:08:54 24 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0630dz.r in process_file_group 12:08:55 24 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [630] 12:08:55 24 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [630] 12:08:55 24 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260630) for profiles 12:08:55 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 12:08:55 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/721) 719:721 to QC_BAD because CT out of water 12:08:55 24 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.131m) 12:08:55 24 Apr 2017 UTC: INFO: QC.py(365): Changed (3/721) 3 4 720 to QC_PROBABLY_BAD because raw temperature spikes 12:08:55 24 Apr 2017 UTC: INFO: QC.py(377): Changed (2/721) 720 721 to QC_BAD because raw salinity below bound 12:08:55 24 Apr 2017 UTC: INFO: QC.py(180): Changed (2/721) 3 4 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 12:08:55 24 Apr 2017 UTC: INFO: QC.py(180): Changed (1/721) 719 to QC_BAD because changed raw cond implies changed raw salinity 12:08:55 24 Apr 2017 UTC: INFO: QC.py(365): Changed (3/721) 3 4 720 to QC_INTERPOLATED because temperature spikes 12:08:55 24 Apr 2017 UTC: INFO: QC.py(377): Changed (2/721) 720 721 to QC_BAD because salinity below bound 12:08:55 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/721) 275:279 to QC_BAD because slow apogee CT flow 12:08:55 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/721) 1:6 to QC_BAD because prior to dive start 12:08:55 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/721) 1:6 275:279 719:721 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:08:55 24 Apr 2017 UTC: INFO: QC.py(180): Changed (14/721) 1:6 275:279 719:721 to QC_BAD because changed corrected salin implies changed speed 12:08:56 24 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:08:56 24 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 630 interp_salinity data_points in_between 423 435 % suspect thermal-inertia points 424 12:08:56 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.42 cm/s 12:08:56 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.52 cm/s 12:08:56 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:08:56 24 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (206/721) 154 155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:08:56 24 Apr 2017 UTC: INFO: QC.py(180): Changed (3/721) 3 4 720 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 12:08:56 24 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (206/721) 154 155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 12:08:56 24 Apr 2017 UTC: INFO: QC.py(180): Changed (3/721) 3 4 720 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 12:08:56 24 Apr 2017 UTC: INFO: QC.py(180): Changed (14/721) 1:6 275:279 719:721 to QC_BAD because changed salinity implies changed optode oxygen 12:08:56 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:08:56 24 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:08:56 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 12:08:56 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 630: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.94% reduction 12:08:56 24 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.630 12:08:56 24 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:08:56 24 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:08:56 24 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:08:57 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 12:08:57 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 12:14:26 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 12:14:28 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 12:14:28 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 12:15:48 24 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:15:48 24 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:15:48 24 Apr 2017 UTC: ERROR: Base.py(1960): Dive [624, 627] failed to process completely. The following files were not processed completely: /home/sg626/sg0624dz.r Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) - consider resend_dive /d 624 01 /home/sg626/sg0627dz.r Fragment ./sg0627dz.x00 file size (1453) not equal to expected size (4096) - consider resend_dive /d 627 00 Glider logout seen - transmissions from glider complete Consult baselog_170424020829 for details. 12:15:48 24 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 12:15:48 24 Apr 2017 UTC /home/sg626/p6260630.log /home/sg626/p6260630.eng /home/sg626/p6260630.asc /home/sg626/p6260630.pro /home/sg626/p6260630.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 12:15:48 24 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:15:48 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:15:48 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:15:48 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:15:48 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:15:48 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:15:48 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:15:48 24 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:15:48 24 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:15:48 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:15:48 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:15:48 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:15:48 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:15:48 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:15:48 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:15:48 24 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:15:48 24 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 12:15:48 24 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 12:15:48 24 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 12:15:48 24 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 12:15:48 24 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:15:48 24 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:15:48 24 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:15:48 24 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 12:15:48 24 Apr 2017 UTC 16:05:08 24 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 3970 16:05:08 24 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:08:23 24 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 4089 16:08:23 24 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:08:23 24 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:08:23 24 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:08:23 24 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:08:23 24 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170424060823 ] 16:08:23 24 Apr 2017 UTC: INFO: Base.py(1333): PID:4096 16:08:23 24 Apr 2017 UTC: INFO: Base.py(1375): Started processing 16:08:23 24 Apr 2017 UTC 16:08:24 24 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:08:25 24 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:08:25 24 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:08:25 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:08:25 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:631 calls_made:1 call_cycle:0 16:08:25 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:08:25 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:631 calls_made:1 call_cycle:0 16:08:25 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:08:25 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:631 calls_made:1 call_cycle:0 16:08:25 24 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:631 calls_made:1 call_cycle:0 2233.9660 -15800.3720 04/24/17 16:02:30 UTC) to sdrifter@soest.hawaii.edu 16:08:25 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:631 calls_made:1 call_cycle:0 16:08:25 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:08:25 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:631 calls_made:1 call_cycle:0 16:08:25 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:08:25 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:631 calls_made:1 call_cycle:0 16:08:25 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:08:25 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:631 calls_made:1 call_cycle:0 16:08:25 24 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:08:25 24 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:08:36 24 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:08:38 24 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:08:38 24 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:08:38 24 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:08:38 24 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:08:38 24 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:08:44 24 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:08:44 24 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0624dz 16:08:44 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x00 16:08:44 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x01 16:08:44 24 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) 16:08:44 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x02 16:08:44 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x03 16:08:44 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x04 16:08:44 24 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0624dz.r in process_file_group 16:08:44 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 11 16:08:44 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 12 16:08:44 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 13 16:08:44 24 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0624dz.r - expected 0x3356983894, generated 0x764acec6 16:08:44 24 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0624dz.r - expected 0xf2ed, generated 0x9548 16:08:44 24 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0624dz.r - skipping 16:08:44 24 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0624dz - skipping 16:08:44 24 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:08:44 24 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0627dz 16:08:44 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x00 16:08:44 24 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0627dz.x00 file size (1453) not equal to expected size (4096) 16:08:44 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x01 16:08:44 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x02 16:08:44 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x03 16:08:44 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x04 16:08:44 24 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0627dz.r in process_file_group 16:08:44 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 1 16:08:44 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 2 16:08:44 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 3 16:08:44 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 4 16:08:44 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 5 16:08:44 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 6 16:08:44 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 7 16:08:44 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 8 16:08:44 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 9 16:08:44 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 10 16:08:44 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 11 16:08:44 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 12 16:08:44 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 13 16:08:44 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 14 16:08:44 24 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0627dz.r - expected 0x7468771, generated 0x34a5275b 16:08:44 24 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0627dz.r - expected 0xf9e5, generated 0x825 16:08:44 24 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0627dz.r - skipping 16:08:44 24 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0627dz - skipping 16:08:44 24 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0631lz 16:08:44 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0631lz.x00 16:08:44 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0631lz.x01 16:08:44 24 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0631lz.r in process_file_group 16:08:44 24 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260631.log 16:08:44 24 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:08:44 24 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0631dz 16:08:44 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0631dz.x00 16:08:44 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0631dz.x01 16:08:44 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0631dz.x02 16:08:44 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0631dz.x03 16:08:44 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0631dz.x04 16:08:44 24 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0631dz.r in process_file_group 16:08:44 24 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [631] 16:08:44 24 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [631] 16:08:45 24 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260631) for profiles 16:08:45 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:08:45 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/693) 691:693 to QC_BAD because CT out of water 16:08:45 24 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.292m) 16:08:45 24 Apr 2017 UTC: INFO: QC.py(365): Changed (6/693) 3 4 269 284 691 692 to QC_PROBABLY_BAD because raw temperature spikes 16:08:45 24 Apr 2017 UTC: INFO: QC.py(408): Changed (2/693) 269 284 to QC_PROBABLY_BAD because raw conductivity spikes 16:08:45 24 Apr 2017 UTC: INFO: QC.py(180): Changed (6/693) 3 4 269 284 691 692 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:08:45 24 Apr 2017 UTC: INFO: QC.py(180): Changed (3/693) 691:693 to QC_BAD because changed raw cond implies changed raw salinity 16:08:45 24 Apr 2017 UTC: INFO: QC.py(365): Changed (6/693) 3 4 269 284 691 692 to QC_INTERPOLATED because temperature spikes 16:08:45 24 Apr 2017 UTC: INFO: QC.py(408): Changed (2/693) 269 284 to QC_INTERPOLATED because conductivity spikes 16:08:45 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/693) 276:280 to QC_BAD because slow apogee CT flow 16:08:45 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/693) 1:6 to QC_BAD because prior to dive start 16:08:45 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/693) 690 to QC_BAD because end of climb 16:08:45 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/693) 1:6 276:280 690:693 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:08:45 24 Apr 2017 UTC: INFO: QC.py(180): Changed (15/693) 1:6 276:280 690:693 to QC_BAD because changed corrected salin implies changed speed 16:08:45 24 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:08:45 24 Apr 2017 UTC: INFO: QC.py(180): Changed (2/693) 269 284 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 16:08:45 24 Apr 2017 UTC: INFO: QC.py(180): Changed (2/693) 269 284 to QC_INTERPOLATED because changed corrected temp implies changed speed 16:08:45 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.74 cm/s 16:08:45 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.54 cm/s 16:08:45 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:08:45 24 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (211/693) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:08:45 24 Apr 2017 UTC: INFO: QC.py(180): Changed (4/693) 3 4 691 692 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:08:45 24 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (211/693) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:08:46 24 Apr 2017 UTC: INFO: QC.py(180): Changed (4/693) 3 4 691 692 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:08:46 24 Apr 2017 UTC: INFO: QC.py(180): Changed (15/693) 1:6 276:280 690:693 to QC_BAD because changed salinity implies changed optode oxygen 16:08:46 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:08:46 24 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:08:46 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:08:46 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 631: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.16% reduction 16:08:46 24 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.631 16:08:46 24 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:08:46 24 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:08:46 24 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:08:46 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:08:46 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:14:16 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 16:14:18 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:14:18 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:15:37 24 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:15:37 24 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:15:37 24 Apr 2017 UTC: ERROR: Base.py(1960): Dive [624, 627] failed to process completely. The following files were not processed completely: /home/sg626/sg0624dz.r Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) - consider resend_dive /d 624 01 /home/sg626/sg0627dz.r Fragment ./sg0627dz.x00 file size (1453) not equal to expected size (4096) - consider resend_dive /d 627 00 Glider logout seen - transmissions from glider complete Consult baselog_170424060823 for details. 16:15:37 24 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:15:37 24 Apr 2017 UTC /home/sg626/p6260631.log /home/sg626/p6260631.eng /home/sg626/p6260631.asc /home/sg626/p6260631.pro /home/sg626/p6260631.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:15:37 24 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:15:37 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:15:37 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:15:37 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:15:37 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:15:37 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:15:37 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:15:37 24 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:15:37 24 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:15:37 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:15:37 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:15:37 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:15:37 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:15:37 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:15:37 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:15:38 24 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:15:38 24 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:15:38 24 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:15:38 24 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:15:38 24 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:15:38 24 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:15:38 24 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:15:38 24 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:15:38 24 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 16:15:38 24 Apr 2017 UTC 20:12:17 24 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 11792 20:12:17 24 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:15:39 24 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 11918 20:15:39 24 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:15:39 24 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:15:39 24 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:15:39 24 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:15:39 24 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170424101538 ] 20:15:39 24 Apr 2017 UTC: INFO: Base.py(1333): PID:11926 20:15:39 24 Apr 2017 UTC: INFO: Base.py(1375): Started processing 20:15:39 24 Apr 2017 UTC 20:15:39 24 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:15:41 24 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:15:41 24 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:15:41 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:15:41 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:632 calls_made:1 call_cycle:0 20:15:41 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:15:41 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:632 calls_made:1 call_cycle:0 20:15:41 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:15:41 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:632 calls_made:1 call_cycle:0 20:15:41 24 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:632 calls_made:1 call_cycle:0 2234.0690 -15800.0920 04/24/17 20:09:43 UTC) to sdrifter@soest.hawaii.edu 20:15:41 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:632 calls_made:1 call_cycle:0 20:15:41 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:15:41 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:632 calls_made:1 call_cycle:0 20:15:41 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:15:41 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:632 calls_made:1 call_cycle:0 20:15:41 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:15:41 24 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:632 calls_made:1 call_cycle:0 20:15:41 24 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:15:41 24 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:15:51 24 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:15:53 24 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:15:53 24 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:15:53 24 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:15:53 24 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:15:53 24 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:15:59 24 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:15:59 24 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0624dz 20:15:59 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x00 20:15:59 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x01 20:15:59 24 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) 20:15:59 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x02 20:15:59 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x03 20:15:59 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x04 20:15:59 24 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0624dz.r in process_file_group 20:15:59 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 11 20:15:59 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 12 20:15:59 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 13 20:15:59 24 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0624dz.r - expected 0x3356983894, generated 0x764acec6 20:15:59 24 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0624dz.r - expected 0xf2ed, generated 0x9548 20:15:59 24 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0624dz.r - skipping 20:15:59 24 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0624dz - skipping 20:15:59 24 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:15:59 24 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0627dz 20:15:59 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x00 20:15:59 24 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0627dz.x00 file size (1453) not equal to expected size (4096) 20:15:59 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x01 20:15:59 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x02 20:15:59 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x03 20:15:59 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x04 20:15:59 24 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0627dz.r in process_file_group 20:15:59 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 1 20:15:59 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 2 20:15:59 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 3 20:15:59 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 4 20:15:59 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 5 20:15:59 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 6 20:15:59 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 7 20:15:59 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 8 20:15:59 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 9 20:15:59 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 10 20:15:59 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 11 20:15:59 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 12 20:15:59 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 13 20:15:59 24 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 14 20:15:59 24 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0627dz.r - expected 0x7468771, generated 0x34a5275b 20:15:59 24 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0627dz.r - expected 0xf9e5, generated 0x825 20:15:59 24 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0627dz.r - skipping 20:15:59 24 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0627dz - skipping 20:16:00 24 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0632lz 20:16:00 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0632lz.x00 20:16:00 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0632lz.x01 20:16:00 24 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0632lz.r in process_file_group 20:16:00 24 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260632.log 20:16:00 24 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:16:00 24 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0632dz 20:16:00 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0632dz.x00 20:16:00 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0632dz.x01 20:16:00 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0632dz.x02 20:16:00 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0632dz.x03 20:16:00 24 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0632dz.x04 20:16:00 24 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0632dz.r in process_file_group 20:16:00 24 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [632] 20:16:00 24 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [632] 20:16:00 24 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260632) for profiles 20:16:00 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 20:16:00 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/744) 744 to QC_BAD because CT out of water 20:16:00 24 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.044m) 20:16:00 24 Apr 2017 UTC: INFO: QC.py(365): Changed (5/744) 2 5 258 316 742 to QC_PROBABLY_BAD because raw temperature spikes 20:16:00 24 Apr 2017 UTC: INFO: QC.py(408): Changed (1/744) 316 to QC_PROBABLY_BAD because raw conductivity spikes 20:16:00 24 Apr 2017 UTC: INFO: QC.py(180): Changed (5/744) 2 5 258 316 742 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 20:16:00 24 Apr 2017 UTC: INFO: QC.py(180): Changed (1/744) 744 to QC_BAD because changed raw cond implies changed raw salinity 20:16:00 24 Apr 2017 UTC: INFO: QC.py(365): Changed (5/744) 2 5 258 316 742 to QC_INTERPOLATED because temperature spikes 20:16:01 24 Apr 2017 UTC: INFO: QC.py(408): Changed (1/744) 316 to QC_INTERPOLATED because conductivity spikes 20:16:01 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/744) 283:287 to QC_BAD because slow apogee CT flow 20:16:01 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/744) 1:6 to QC_BAD because prior to dive start 20:16:01 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/744) 742 743 to QC_BAD because end of climb 20:16:01 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/744) 1:6 283:287 742:744 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 20:16:01 24 Apr 2017 UTC: INFO: QC.py(180): Changed (14/744) 1:6 283:287 742:744 to QC_BAD because changed corrected salin implies changed speed 20:16:01 24 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 20:16:01 24 Apr 2017 UTC: INFO: QC.py(180): Changed (2/744) 258 316 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 20:16:01 24 Apr 2017 UTC: INFO: QC.py(180): Changed (2/744) 258 316 to QC_INTERPOLATED because changed corrected temp implies changed speed 20:16:01 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.61 cm/s 20:16:01 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.63 cm/s 20:16:01 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 20:16:01 24 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (214/744) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 20:16:01 24 Apr 2017 UTC: INFO: QC.py(180): Changed (4/744) 2 5 316 742 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 20:16:01 24 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (214/744) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 20:16:01 24 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (4/744) 736 737 740 741 to QC_BAD because bad aa4330 oyxgen 20:16:01 24 Apr 2017 UTC: INFO: QC.py(180): Changed (4/744) 2 5 316 742 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 20:16:01 24 Apr 2017 UTC: INFO: QC.py(180): Changed (14/744) 1:6 283:287 742:744 to QC_BAD because changed salinity implies changed optode oxygen 20:16:01 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 20:16:01 24 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 20:16:01 24 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 20:16:02 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 632: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.88% reduction 20:16:02 24 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.632 20:16:02 24 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:16:02 24 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:16:02 24 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:16:02 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 20:16:02 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 20:21:34 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 20:21:36 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 20:21:36 24 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 20:22:56 24 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:22:56 24 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:22:56 24 Apr 2017 UTC: ERROR: Base.py(1960): Dive [624, 627] failed to process completely. The following files were not processed completely: /home/sg626/sg0624dz.r Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) - consider resend_dive /d 624 01 /home/sg626/sg0627dz.r Fragment ./sg0627dz.x00 file size (1453) not equal to expected size (4096) - consider resend_dive /d 627 00 Glider logout seen - transmissions from glider complete Consult baselog_170424101538 for details. 20:22:56 24 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:22:56 24 Apr 2017 UTC /home/sg626/p6260632.log /home/sg626/p6260632.eng /home/sg626/p6260632.asc /home/sg626/p6260632.pro /home/sg626/p6260632.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 20:22:56 24 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:22:56 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:22:56 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:22:56 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:22:56 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:22:56 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:22:56 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:22:56 24 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:22:56 24 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:22:56 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:22:56 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:22:56 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:22:58 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:22:58 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:22:58 24 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:22:58 24 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:22:58 24 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:22:58 24 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:22:58 24 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:22:58 24 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:22:58 24 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:22:58 24 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:22:58 24 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:22:58 24 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 20:22:58 24 Apr 2017 UTC 00:22:30 25 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 19671 00:22:30 25 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:26:06 25 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 19797 00:26:06 25 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:26:06 25 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:26:06 25 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:26:06 25 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:26:06 25 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170424142606 ] 00:26:06 25 Apr 2017 UTC: INFO: Base.py(1333): PID:19804 00:26:07 25 Apr 2017 UTC: INFO: Base.py(1375): Started processing 00:26:07 25 Apr 2017 UTC 00:26:07 25 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:26:08 25 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:26:08 25 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:26:08 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:26:08 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:633 calls_made:1 call_cycle:0 00:26:08 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:26:08 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:633 calls_made:1 call_cycle:0 00:26:08 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:26:08 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:633 calls_made:1 call_cycle:0 00:26:08 25 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:633 calls_made:1 call_cycle:0 2233.9310 -15800.2730 04/25/17 00:20:00 UTC) to sdrifter@soest.hawaii.edu 00:26:13 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:633 calls_made:1 call_cycle:0 00:26:13 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:26:13 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:633 calls_made:1 call_cycle:0 00:26:13 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:26:13 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:633 calls_made:1 call_cycle:0 00:26:13 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:26:13 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:633 calls_made:1 call_cycle:0 00:26:13 25 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:26:13 25 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:26:24 25 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:26:26 25 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:26:26 25 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:26:26 25 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:26:26 25 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:26:26 25 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:26:32 25 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:26:32 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0624dz 00:26:32 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x00 00:26:32 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x01 00:26:32 25 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) 00:26:32 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x02 00:26:32 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x03 00:26:32 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x04 00:26:32 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0624dz.r in process_file_group 00:26:32 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 11 00:26:32 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 12 00:26:32 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 13 00:26:32 25 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0624dz.r - expected 0x3356983894, generated 0x764acec6 00:26:32 25 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0624dz.r - expected 0xf2ed, generated 0x9548 00:26:32 25 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0624dz.r - skipping 00:26:32 25 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0624dz - skipping 00:26:32 25 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:26:32 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0627dz 00:26:32 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x00 00:26:32 25 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0627dz.x00 file size (1453) not equal to expected size (4096) 00:26:32 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x01 00:26:32 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x02 00:26:32 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x03 00:26:32 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x04 00:26:32 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0627dz.r in process_file_group 00:26:32 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 1 00:26:32 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 2 00:26:32 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 3 00:26:32 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 4 00:26:32 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 5 00:26:32 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 6 00:26:32 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 7 00:26:32 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 8 00:26:32 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 9 00:26:32 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 10 00:26:32 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 11 00:26:32 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 12 00:26:32 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 13 00:26:32 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 14 00:26:32 25 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0627dz.r - expected 0x7468771, generated 0x34a5275b 00:26:32 25 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0627dz.r - expected 0xf9e5, generated 0x825 00:26:32 25 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0627dz.r - skipping 00:26:32 25 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0627dz - skipping 00:26:32 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0633lz 00:26:32 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0633lz.x00 00:26:32 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0633lz.x01 00:26:32 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0633lz.r in process_file_group 00:26:32 25 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260633.log 00:26:32 25 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:26:32 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0633dz 00:26:32 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0633dz.x00 00:26:32 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0633dz.x01 00:26:32 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0633dz.x02 00:26:32 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0633dz.r in process_file_group 00:26:32 25 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0633dz.r - expected 0x1264690328, generated 0x6678c411 00:26:32 25 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0633dz.r - expected 0x8512b35c, generated 0xa558 00:26:32 25 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0633dz.r - skipping 00:26:32 25 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0633dz - skipping 00:26:32 25 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 00:26:32 25 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [633] 00:26:32 25 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 00:26:32 25 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.633 00:26:32 25 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:26:32 25 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:26:32 25 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:26:32 25 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:26:32 25 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:26:32 25 Apr 2017 UTC: ERROR: Base.py(1960): Dive [624, 627, 633] failed to process completely. The following files were not processed completely: /home/sg626/sg0624dz.r Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) - consider resend_dive /d 624 01 /home/sg626/sg0627dz.r Fragment ./sg0627dz.x00 file size (1453) not equal to expected size (4096) - consider resend_dive /d 627 00 /home/sg626/sg0633dz.r Glider logout not seen - retransmissions from glider possible Consult baselog_170424142606 for details. 00:26:32 25 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:26:32 25 Apr 2017 UTC /home/sg626/p6260633.log 00:26:32 25 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:26:32 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:26:32 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:26:32 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:26:32 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:26:32 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:26:32 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:26:32 25 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:26:32 25 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:26:32 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:26:32 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:26:32 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:26:33 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:26:33 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:26:33 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:26:33 25 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:26:33 25 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:26:33 25 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:26:33 25 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:26:33 25 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:26:33 25 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:26:33 25 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:26:33 25 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:26:33 25 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 00:26:33 25 Apr 2017 UTC 00:30:48 25 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 20242 00:30:48 25 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:33:04 25 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 20355 00:33:04 25 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:33:04 25 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:33:04 25 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:33:04 25 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:33:04 25 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170424143304 ] 00:33:04 25 Apr 2017 UTC: INFO: Base.py(1333): PID:20362 00:33:04 25 Apr 2017 UTC: INFO: Base.py(1375): Started processing 00:33:04 25 Apr 2017 UTC 00:33:04 25 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:33:06 25 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:33:06 25 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:33:06 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:33:06 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:633 calls_made:3 call_cycle:0 00:33:06 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:33:06 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:633 calls_made:3 call_cycle:0 00:33:06 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:33:06 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:633 calls_made:3 call_cycle:0 00:33:06 25 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:633 calls_made:3 call_cycle:0 2233.9310 -15800.2730 04/25/17 00:20:00 UTC) to sdrifter@soest.hawaii.edu 00:33:06 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:633 calls_made:3 call_cycle:0 00:33:06 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:33:06 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:633 calls_made:3 call_cycle:0 00:33:06 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:33:06 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:633 calls_made:3 call_cycle:0 00:33:06 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:33:06 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:633 calls_made:3 call_cycle:0 00:33:06 25 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:33:06 25 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:33:16 25 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:33:18 25 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:33:18 25 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:33:18 25 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:33:18 25 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:33:18 25 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:33:24 25 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:33:24 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0624dz 00:33:24 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x00 00:33:24 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x01 00:33:24 25 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) 00:33:24 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x02 00:33:24 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x03 00:33:24 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x04 00:33:24 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0624dz.r in process_file_group 00:33:24 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 11 00:33:24 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 12 00:33:24 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 13 00:33:24 25 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0624dz.r - expected 0x3356983894, generated 0x764acec6 00:33:24 25 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0624dz.r - expected 0xf2ed, generated 0x9548 00:33:24 25 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0624dz.r - skipping 00:33:24 25 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0624dz - skipping 00:33:24 25 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:33:24 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0627dz 00:33:24 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x00 00:33:24 25 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0627dz.x00 file size (1453) not equal to expected size (4096) 00:33:24 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x01 00:33:24 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x02 00:33:24 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x03 00:33:24 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x04 00:33:24 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0627dz.r in process_file_group 00:33:24 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 1 00:33:24 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 2 00:33:24 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 3 00:33:24 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 4 00:33:24 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 5 00:33:24 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 6 00:33:24 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 7 00:33:24 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 8 00:33:24 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 9 00:33:24 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 10 00:33:24 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 11 00:33:24 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 12 00:33:24 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 13 00:33:24 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 14 00:33:24 25 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0627dz.r - expected 0x7468771, generated 0x34a5275b 00:33:24 25 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0627dz.r - expected 0xf9e5, generated 0x825 00:33:24 25 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0627dz.r - skipping 00:33:24 25 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0627dz - skipping 00:33:25 25 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:33:25 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0633dz 00:33:25 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0633dz.x00 00:33:25 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0633dz.x01 00:33:25 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0633dz.x02 00:33:25 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0633dz.x03 00:33:25 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0633dz.x04 00:33:25 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0633dz.r in process_file_group 00:33:25 25 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [633] 00:33:25 25 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [633] 00:33:25 25 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260633) for profiles 00:33:25 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 00:33:25 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/733) 731:733 to QC_BAD because CT out of water 00:33:25 25 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.157m) 00:33:25 25 Apr 2017 UTC: INFO: QC.py(365): Changed (10/733) 4 224 256 288 327 329 332 333 731 732 to QC_PROBABLY_BAD because raw temperature spikes 00:33:25 25 Apr 2017 UTC: INFO: QC.py(377): Changed (2/733) 732 733 to QC_BAD because raw salinity below bound 00:33:25 25 Apr 2017 UTC: INFO: QC.py(408): Changed (5/733) 288 327 332 333 335 to QC_PROBABLY_BAD because raw conductivity spikes 00:33:25 25 Apr 2017 UTC: INFO: QC.py(180): Changed (9/733) 4 224 256 288 327 329 332 333 731 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:33:25 25 Apr 2017 UTC: INFO: QC.py(180): Changed (1/733) 335 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 00:33:25 25 Apr 2017 UTC: INFO: QC.py(180): Changed (1/733) 731 to QC_BAD because changed raw cond implies changed raw salinity 00:33:25 25 Apr 2017 UTC: INFO: QC.py(365): Changed (10/733) 4 224 256 288 327 329 332 333 731 732 to QC_INTERPOLATED because temperature spikes 00:33:25 25 Apr 2017 UTC: INFO: QC.py(377): Changed (2/733) 732 733 to QC_BAD because salinity below bound 00:33:25 25 Apr 2017 UTC: INFO: QC.py(408): Changed (5/733) 288 327 332 333 335 to QC_INTERPOLATED because conductivity spikes 00:33:25 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/733) 283:288 to QC_BAD because slow apogee CT flow 00:33:25 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/733) 1:6 to QC_BAD because prior to dive start 00:33:25 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/733) 1:6 283:288 731:733 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:33:25 25 Apr 2017 UTC: INFO: QC.py(180): Changed (15/733) 1:6 283:288 731:733 to QC_BAD because changed corrected salin implies changed speed 00:33:26 25 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:33:26 25 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 633 interp_salinity data_points in_between 132 138 % suspect thermal-inertia points 133 00:33:26 25 Apr 2017 UTC: INFO: QC.py(180): Changed (6/733) 224 256 327 329 332 333 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 00:33:26 25 Apr 2017 UTC: INFO: QC.py(180): Changed (1/733) 335 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 00:33:26 25 Apr 2017 UTC: INFO: QC.py(180): Changed (6/733) 224 256 327 329 332 333 to QC_INTERPOLATED because changed corrected temp implies changed speed 00:33:26 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.07 cm/s 00:33:26 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.30 cm/s 00:33:26 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:33:26 25 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (214/733) 154 155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:33:26 25 Apr 2017 UTC: INFO: QC.py(180): Changed (4/733) 4 256 731 732 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:33:26 25 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (214/733) 154 155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 00:33:26 25 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/733) 728 733 to QC_BAD because bad aa4330 oyxgen 00:33:26 25 Apr 2017 UTC: INFO: QC.py(180): Changed (4/733) 4 256 731 732 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:33:26 25 Apr 2017 UTC: INFO: QC.py(180): Changed (14/733) 1:6 283:288 731 732 to QC_BAD because changed salinity implies changed optode oxygen 00:33:26 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:33:26 25 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:33:26 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 00:33:27 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 633: Data set size for profile, binned and kkyy files reduced by 15 points, a 2.05% reduction 00:33:27 25 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.633 00:33:27 25 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:33:27 25 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:33:27 25 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:33:27 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 00:33:27 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 00:38:56 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 00:38:58 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 00:38:58 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 00:40:19 25 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:40:19 25 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:40:19 25 Apr 2017 UTC: ERROR: Base.py(1960): Dive [624, 627] failed to process completely. The following files were not processed completely: /home/sg626/sg0624dz.r Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) - consider resend_dive /d 624 01 /home/sg626/sg0627dz.r Fragment ./sg0627dz.x00 file size (1453) not equal to expected size (4096) - consider resend_dive /d 627 00 Glider logout seen - transmissions from glider complete Consult baselog_170424143304 for details. 00:40:19 25 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:40:19 25 Apr 2017 UTC /home/sg626/p6260633.eng /home/sg626/p6260633.asc /home/sg626/p6260633.pro /home/sg626/p6260633.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 00:40:19 25 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:40:19 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:40:19 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:40:19 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:40:19 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:40:19 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:40:19 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:40:19 25 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:40:19 25 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:40:19 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:40:19 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:40:19 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:40:19 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:40:19 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:40:19 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:40:19 25 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:40:19 25 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:40:19 25 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:40:19 25 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:40:19 25 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:40:19 25 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:40:19 25 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:40:19 25 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:40:19 25 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 00:40:19 25 Apr 2017 UTC 04:43:56 25 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 27958 04:43:56 25 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:47:21 25 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 28085 04:47:21 25 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:47:21 25 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:47:21 25 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:47:21 25 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:47:21 25 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170424184720 ] 04:47:21 25 Apr 2017 UTC: INFO: Base.py(1333): PID:28093 04:47:21 25 Apr 2017 UTC: INFO: Base.py(1375): Started processing 04:47:21 25 Apr 2017 UTC 04:47:21 25 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:47:23 25 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:47:23 25 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:47:23 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:47:23 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:634 calls_made:2 call_cycle:0 04:47:23 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:47:23 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:634 calls_made:2 call_cycle:0 04:47:23 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:47:23 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:634 calls_made:2 call_cycle:0 04:47:23 25 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:634 calls_made:2 call_cycle:0 2234.4540 -15800.0600 04/25/17 04:39:30 UTC) to sdrifter@soest.hawaii.edu 04:47:23 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:634 calls_made:2 call_cycle:0 04:47:23 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:47:23 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:634 calls_made:2 call_cycle:0 04:47:23 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:47:23 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:634 calls_made:2 call_cycle:0 04:47:23 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:47:23 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:634 calls_made:2 call_cycle:0 04:47:23 25 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:47:23 25 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:47:33 25 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:47:35 25 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:47:35 25 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:47:35 25 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:47:35 25 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:47:35 25 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:47:41 25 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:47:41 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0624dz 04:47:41 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x00 04:47:41 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x01 04:47:41 25 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) 04:47:41 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x02 04:47:41 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x03 04:47:41 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x04 04:47:41 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0624dz.r in process_file_group 04:47:41 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 11 04:47:41 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 12 04:47:41 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 13 04:47:41 25 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0624dz.r - expected 0x3356983894, generated 0x764acec6 04:47:41 25 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0624dz.r - expected 0xf2ed, generated 0x9548 04:47:41 25 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0624dz.r - skipping 04:47:41 25 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0624dz - skipping 04:47:41 25 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:47:41 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0627dz 04:47:41 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x00 04:47:41 25 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0627dz.x00 file size (1453) not equal to expected size (4096) 04:47:41 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x01 04:47:41 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x02 04:47:41 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x03 04:47:41 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x04 04:47:41 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0627dz.r in process_file_group 04:47:41 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 1 04:47:41 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 2 04:47:41 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 3 04:47:41 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 4 04:47:41 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 5 04:47:41 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 6 04:47:41 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 7 04:47:41 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 8 04:47:41 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 9 04:47:41 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 10 04:47:41 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 11 04:47:41 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 12 04:47:41 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 13 04:47:41 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 14 04:47:41 25 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0627dz.r - expected 0x7468771, generated 0x34a5275b 04:47:41 25 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0627dz.r - expected 0xf9e5, generated 0x825 04:47:41 25 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0627dz.r - skipping 04:47:41 25 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0627dz - skipping 04:47:41 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0634lz 04:47:41 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0634lz.x00 04:47:41 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0634lz.x01 04:47:41 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0634lz.r in process_file_group 04:47:41 25 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260634.log 04:47:41 25 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 04:47:41 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0634dz 04:47:41 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0634dz.x00 04:47:41 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0634dz.x01 04:47:41 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0634dz.x02 04:47:41 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0634dz.x03 04:47:41 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0634dz.x04 04:47:41 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0634dz.r in process_file_group 04:47:42 25 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [634] 04:47:42 25 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [634] 04:47:42 25 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260634) for profiles 04:47:42 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 04:47:42 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (4/756) 753:756 to QC_BAD because CT out of water 04:47:42 25 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.142m) 04:47:42 25 Apr 2017 UTC: INFO: QC.py(365): Changed (5/756) 229 230 753:755 to QC_PROBABLY_BAD because raw temperature spikes 04:47:42 25 Apr 2017 UTC: INFO: QC.py(408): Changed (5/756) 2 229 230 266 267 to QC_PROBABLY_BAD because raw conductivity spikes 04:47:42 25 Apr 2017 UTC: INFO: QC.py(180): Changed (5/756) 229 230 753:755 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:47:42 25 Apr 2017 UTC: INFO: QC.py(180): Changed (3/756) 2 266 267 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 04:47:42 25 Apr 2017 UTC: INFO: QC.py(180): Changed (4/756) 753:756 to QC_BAD because changed raw cond implies changed raw salinity 04:47:42 25 Apr 2017 UTC: INFO: QC.py(365): Changed (5/756) 229 230 753:755 to QC_INTERPOLATED because temperature spikes 04:47:42 25 Apr 2017 UTC: INFO: QC.py(408): Changed (5/756) 2 229 230 266 267 to QC_INTERPOLATED because conductivity spikes 04:47:42 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/756) 286:290 to QC_BAD because slow apogee CT flow 04:47:42 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/756) 1:6 to QC_BAD because prior to dive start 04:47:42 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/756) 752 to QC_BAD because end of climb 04:47:42 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/756) 1:6 286:290 752:756 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:47:42 25 Apr 2017 UTC: INFO: QC.py(180): Changed (16/756) 1:6 286:290 752:756 to QC_BAD because changed corrected salin implies changed speed 04:47:43 25 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:47:43 25 Apr 2017 UTC: INFO: QC.py(180): Changed (2/756) 229 230 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 04:47:43 25 Apr 2017 UTC: INFO: QC.py(180): Changed (2/756) 266 267 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 04:47:43 25 Apr 2017 UTC: INFO: QC.py(180): Changed (2/756) 229 230 to QC_INTERPOLATED because changed corrected temp implies changed speed 04:47:43 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.49 cm/s 04:47:43 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.34 cm/s 04:47:43 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:47:43 25 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (214/756) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:47:43 25 Apr 2017 UTC: INFO: QC.py(180): Changed (3/756) 753:755 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:47:43 25 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (214/756) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 04:47:43 25 Apr 2017 UTC: INFO: QC.py(180): Changed (3/756) 753:755 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:47:43 25 Apr 2017 UTC: INFO: QC.py(180): Changed (16/756) 1:6 286:290 752:756 to QC_BAD because changed salinity implies changed optode oxygen 04:47:43 25 Apr 2017 UTC: INFO: QC.py(180): Changed (1/756) 266 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 04:47:43 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:47:43 25 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:47:43 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 04:47:43 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 634: Data set size for profile, binned and kkyy files reduced by 16 points, a 2.12% reduction 04:47:43 25 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.634 04:47:43 25 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:47:43 25 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:47:43 25 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:47:44 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 04:47:44 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 04:53:14 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 04:53:16 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 04:53:16 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 04:54:37 25 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:54:37 25 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:54:37 25 Apr 2017 UTC: ERROR: Base.py(1960): Dive [624, 627] failed to process completely. The following files were not processed completely: /home/sg626/sg0624dz.r Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) - consider resend_dive /d 624 01 /home/sg626/sg0627dz.r Fragment ./sg0627dz.x00 file size (1453) not equal to expected size (4096) - consider resend_dive /d 627 00 Glider logout seen - transmissions from glider complete Consult baselog_170424184720 for details. 04:54:37 25 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:54:37 25 Apr 2017 UTC /home/sg626/p6260634.log /home/sg626/p6260634.eng /home/sg626/p6260634.asc /home/sg626/p6260634.pro /home/sg626/p6260634.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 04:54:37 25 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:54:37 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:54:37 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:54:37 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:54:37 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:54:37 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:54:37 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:54:37 25 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:54:37 25 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:54:37 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:54:37 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:54:37 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:54:38 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:54:38 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:54:38 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:54:38 25 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:54:38 25 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:54:38 25 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:54:38 25 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:54:38 25 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:54:38 25 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:54:38 25 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:54:38 25 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:54:38 25 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 04:54:38 25 Apr 2017 UTC 08:45:52 25 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 3540 08:45:52 25 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:49:06 25 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 3695 08:49:06 25 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:49:06 25 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:49:06 25 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:49:06 25 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:49:06 25 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170424224905 ] 08:49:06 25 Apr 2017 UTC: INFO: Base.py(1333): PID:3702 08:49:06 25 Apr 2017 UTC: INFO: Base.py(1375): Started processing 08:49:06 25 Apr 2017 UTC 08:49:06 25 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:49:08 25 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:49:08 25 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:49:08 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:49:08 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:635 calls_made:1 call_cycle:0 08:49:08 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:49:08 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:635 calls_made:1 call_cycle:0 08:49:08 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:49:08 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:635 calls_made:1 call_cycle:0 08:49:08 25 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:635 calls_made:1 call_cycle:0 2233.0920 -15800.8650 04/25/17 08:43:18 UTC) to sdrifter@soest.hawaii.edu 08:49:08 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:635 calls_made:1 call_cycle:0 08:49:08 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:49:08 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:635 calls_made:1 call_cycle:0 08:49:08 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:49:08 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:635 calls_made:1 call_cycle:0 08:49:08 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:49:08 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:635 calls_made:1 call_cycle:0 08:49:08 25 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:49:08 25 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:49:18 25 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:49:20 25 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:49:20 25 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:49:20 25 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:49:20 25 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:49:20 25 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:49:26 25 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:49:26 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0624dz 08:49:26 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x00 08:49:26 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x01 08:49:26 25 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) 08:49:26 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x02 08:49:26 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x03 08:49:26 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x04 08:49:26 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0624dz.r in process_file_group 08:49:26 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 11 08:49:26 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 12 08:49:26 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 13 08:49:26 25 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0624dz.r - expected 0x3356983894, generated 0x764acec6 08:49:26 25 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0624dz.r - expected 0xf2ed, generated 0x9548 08:49:26 25 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0624dz.r - skipping 08:49:26 25 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0624dz - skipping 08:49:26 25 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:49:26 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0627dz 08:49:26 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x00 08:49:26 25 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0627dz.x00 file size (1453) not equal to expected size (4096) 08:49:26 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x01 08:49:26 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x02 08:49:26 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x03 08:49:26 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x04 08:49:26 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0627dz.r in process_file_group 08:49:26 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 1 08:49:26 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 2 08:49:26 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 3 08:49:26 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 4 08:49:26 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 5 08:49:26 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 6 08:49:26 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 7 08:49:26 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 8 08:49:26 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 9 08:49:26 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 10 08:49:26 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 11 08:49:26 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 12 08:49:26 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 13 08:49:26 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 14 08:49:26 25 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0627dz.r - expected 0x7468771, generated 0x34a5275b 08:49:26 25 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0627dz.r - expected 0xf9e5, generated 0x825 08:49:26 25 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0627dz.r - skipping 08:49:26 25 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0627dz - skipping 08:49:26 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0635lz 08:49:26 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0635lz.x00 08:49:26 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0635lz.x01 08:49:26 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0635lz.r in process_file_group 08:49:26 25 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260635.log 08:49:26 25 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:49:26 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0635dz 08:49:26 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0635dz.x00 08:49:26 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0635dz.x01 08:49:26 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0635dz.x02 08:49:26 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0635dz.x03 08:49:26 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0635dz.x04 08:49:26 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0635dz.r in process_file_group 08:49:27 25 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [635] 08:49:27 25 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [635] 08:49:27 25 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260635) for profiles 08:49:27 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:49:27 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/679) 677:679 to QC_BAD because CT out of water 08:49:27 25 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.071m) 08:49:27 25 Apr 2017 UTC: INFO: QC.py(365): Changed (5/679) 2 4 326 327 485 to QC_PROBABLY_BAD because raw temperature spikes 08:49:27 25 Apr 2017 UTC: INFO: QC.py(377): Changed (2/679) 678 679 to QC_BAD because raw salinity below bound 08:49:27 25 Apr 2017 UTC: INFO: QC.py(408): Changed (3/679) 326 327 485 to QC_PROBABLY_BAD because raw conductivity spikes 08:49:27 25 Apr 2017 UTC: INFO: QC.py(180): Changed (5/679) 2 4 326 327 485 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:49:27 25 Apr 2017 UTC: INFO: QC.py(180): Changed (1/679) 677 to QC_BAD because changed raw cond implies changed raw salinity 08:49:27 25 Apr 2017 UTC: INFO: QC.py(365): Changed (5/679) 2 4 326 327 485 to QC_INTERPOLATED because temperature spikes 08:49:27 25 Apr 2017 UTC: INFO: QC.py(377): Changed (2/679) 678 679 to QC_BAD because salinity below bound 08:49:27 25 Apr 2017 UTC: INFO: QC.py(408): Changed (3/679) 326 327 485 to QC_INTERPOLATED because conductivity spikes 08:49:27 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/679) 277:281 to QC_BAD because slow apogee CT flow 08:49:27 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/679) 1:6 to QC_BAD because prior to dive start 08:49:27 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/679) 1:6 277:281 677:679 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:49:27 25 Apr 2017 UTC: INFO: QC.py(180): Changed (14/679) 1:6 277:281 677:679 to QC_BAD because changed corrected salin implies changed speed 08:49:28 25 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:49:28 25 Apr 2017 UTC: INFO: QC.py(180): Changed (3/679) 326 327 485 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 08:49:28 25 Apr 2017 UTC: INFO: QC.py(180): Changed (3/679) 326 327 485 to QC_INTERPOLATED because changed corrected temp implies changed speed 08:49:28 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.12 cm/s 08:49:28 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.43 cm/s 08:49:28 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:49:28 25 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (210/679) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:49:28 25 Apr 2017 UTC: INFO: QC.py(180): Changed (4/679) 2 4 326 485 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:49:28 25 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (210/679) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:49:28 25 Apr 2017 UTC: INFO: QC.py(180): Changed (4/679) 2 4 326 485 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:49:28 25 Apr 2017 UTC: INFO: QC.py(180): Changed (14/679) 1:6 277:281 677:679 to QC_BAD because changed salinity implies changed optode oxygen 08:49:28 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:49:28 25 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:49:28 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 08:49:28 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 635: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.06% reduction 08:49:29 25 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.635 08:49:29 25 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:49:29 25 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:49:29 25 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:49:29 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 08:49:29 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 08:55:02 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 08:55:04 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 08:55:04 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 08:56:25 25 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:56:25 25 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:56:25 25 Apr 2017 UTC: ERROR: Base.py(1960): Dive [624, 627] failed to process completely. The following files were not processed completely: /home/sg626/sg0624dz.r Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) - consider resend_dive /d 624 01 /home/sg626/sg0627dz.r Fragment ./sg0627dz.x00 file size (1453) not equal to expected size (4096) - consider resend_dive /d 627 00 Glider logout seen - transmissions from glider complete Consult baselog_170424224905 for details. 08:56:25 25 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:56:25 25 Apr 2017 UTC /home/sg626/p6260635.log /home/sg626/p6260635.eng /home/sg626/p6260635.asc /home/sg626/p6260635.pro /home/sg626/p6260635.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 08:56:25 25 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:56:25 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:56:25 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:56:25 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:56:25 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:56:25 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:56:25 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:56:25 25 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:56:25 25 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:56:25 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:56:25 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:56:25 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:56:25 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:56:25 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:56:25 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:56:26 25 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:56:26 25 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:56:26 25 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:56:26 25 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:56:26 25 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:56:26 25 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:56:26 25 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:56:26 25 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:56:26 25 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 08:56:26 25 Apr 2017 UTC 12:55:08 25 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 12022 12:55:08 25 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:58:31 25 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 12136 12:58:31 25 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:58:31 25 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:58:31 25 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:58:31 25 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:58:31 25 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170425025830 ] 12:58:31 25 Apr 2017 UTC: INFO: Base.py(1333): PID:12144 12:58:31 25 Apr 2017 UTC: INFO: Base.py(1375): Started processing 12:58:31 25 Apr 2017 UTC 12:58:31 25 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:58:33 25 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:58:33 25 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:58:33 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:58:33 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:636 calls_made:1 call_cycle:0 12:58:33 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:58:33 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:636 calls_made:1 call_cycle:0 12:58:33 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:58:33 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:636 calls_made:1 call_cycle:0 12:58:33 25 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:636 calls_made:1 call_cycle:0 2234.3770 -15801.2250 04/25/17 12:52:30 UTC) to sdrifter@soest.hawaii.edu 12:58:33 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:636 calls_made:1 call_cycle:0 12:58:33 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:58:33 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:636 calls_made:1 call_cycle:0 12:58:33 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:58:33 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:636 calls_made:1 call_cycle:0 12:58:33 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:58:33 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:636 calls_made:1 call_cycle:0 12:58:33 25 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:58:33 25 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:58:43 25 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:58:45 25 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:58:45 25 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:58:45 25 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:58:45 25 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:58:45 25 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:58:51 25 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:58:51 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0624dz 12:58:51 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x00 12:58:51 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x01 12:58:51 25 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) 12:58:51 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x02 12:58:51 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x03 12:58:51 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x04 12:58:51 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0624dz.r in process_file_group 12:58:51 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 11 12:58:51 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 12 12:58:51 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 13 12:58:51 25 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0624dz.r - expected 0x3356983894, generated 0x764acec6 12:58:51 25 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0624dz.r - expected 0xf2ed, generated 0x9548 12:58:51 25 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0624dz.r - skipping 12:58:51 25 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0624dz - skipping 12:58:51 25 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:58:51 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0627dz 12:58:51 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x00 12:58:51 25 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0627dz.x00 file size (1453) not equal to expected size (4096) 12:58:51 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x01 12:58:51 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x02 12:58:51 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x03 12:58:51 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x04 12:58:51 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0627dz.r in process_file_group 12:58:51 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 1 12:58:51 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 2 12:58:51 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 3 12:58:51 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 4 12:58:51 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 5 12:58:51 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 6 12:58:51 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 7 12:58:51 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 8 12:58:51 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 9 12:58:51 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 10 12:58:51 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 11 12:58:51 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 12 12:58:51 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 13 12:58:51 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 14 12:58:51 25 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0627dz.r - expected 0x7468771, generated 0x34a5275b 12:58:51 25 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0627dz.r - expected 0xf9e5, generated 0x825 12:58:51 25 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0627dz.r - skipping 12:58:51 25 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0627dz - skipping 12:58:51 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0636lz 12:58:51 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0636lz.x00 12:58:51 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0636lz.x01 12:58:51 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0636lz.r in process_file_group 12:58:51 25 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260636.log 12:58:51 25 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:58:51 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0636dz 12:58:51 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0636dz.x00 12:58:51 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0636dz.x01 12:58:51 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0636dz.x02 12:58:51 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0636dz.x03 12:58:51 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0636dz.x04 12:58:51 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0636dz.r in process_file_group 12:58:52 25 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [636] 12:58:52 25 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [636] 12:58:52 25 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260636) for profiles 12:58:52 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 12:58:52 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/747) 746 747 to QC_BAD because CT out of water 12:58:52 25 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.118m) 12:58:52 25 Apr 2017 UTC: INFO: QC.py(365): Changed (9/747) 2 3 234 237 249 309 321 330 336 to QC_PROBABLY_BAD because raw temperature spikes 12:58:52 25 Apr 2017 UTC: INFO: QC.py(377): Changed (1/747) 746 to QC_BAD because raw salinity below bound 12:58:52 25 Apr 2017 UTC: INFO: QC.py(408): Changed (9/747) 234 237 249 309 320 321 330 336 341 to QC_PROBABLY_BAD because raw conductivity spikes 12:58:52 25 Apr 2017 UTC: INFO: QC.py(180): Changed (9/747) 2 3 234 237 249 309 321 330 336 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 12:58:52 25 Apr 2017 UTC: INFO: QC.py(180): Changed (2/747) 320 341 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 12:58:52 25 Apr 2017 UTC: INFO: QC.py(180): Changed (1/747) 747 to QC_BAD because changed raw cond implies changed raw salinity 12:58:52 25 Apr 2017 UTC: INFO: QC.py(365): Changed (9/747) 2 3 234 237 249 309 321 330 336 to QC_INTERPOLATED because temperature spikes 12:58:52 25 Apr 2017 UTC: INFO: QC.py(377): Changed (1/747) 746 to QC_BAD because salinity below bound 12:58:52 25 Apr 2017 UTC: INFO: QC.py(408): Changed (9/747) 234 237 249 309 320 321 330 336 341 to QC_INTERPOLATED because conductivity spikes 12:58:52 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/747) 284:288 to QC_BAD because slow apogee CT flow 12:58:52 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/747) 1:6 to QC_BAD because prior to dive start 12:58:52 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/747) 745 to QC_BAD because end of climb 12:58:52 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/747) 1:6 284:288 745:747 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:58:52 25 Apr 2017 UTC: INFO: QC.py(180): Changed (14/747) 1:6 284:288 745:747 to QC_BAD because changed corrected salin implies changed speed 12:58:53 25 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:58:53 25 Apr 2017 UTC: INFO: QC.py(180): Changed (7/747) 234 237 249 309 321 330 336 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 12:58:53 25 Apr 2017 UTC: INFO: QC.py(180): Changed (2/747) 320 341 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 12:58:53 25 Apr 2017 UTC: INFO: QC.py(180): Changed (7/747) 234 237 249 309 321 330 336 to QC_INTERPOLATED because changed corrected temp implies changed speed 12:58:53 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.95 cm/s 12:58:53 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.52 cm/s 12:58:53 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:58:53 25 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (212/747) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:58:53 25 Apr 2017 UTC: INFO: QC.py(180): Changed (4/747) 2 3 321 336 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 12:58:53 25 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (212/747) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 12:58:53 25 Apr 2017 UTC: INFO: QC.py(180): Changed (4/747) 2 3 321 336 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 12:58:53 25 Apr 2017 UTC: INFO: QC.py(180): Changed (14/747) 1:6 284:288 745:747 to QC_BAD because changed salinity implies changed optode oxygen 12:58:53 25 Apr 2017 UTC: INFO: QC.py(180): Changed (1/747) 341 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 12:58:53 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:58:53 25 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:58:53 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 12:58:53 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 636: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.87% reduction 12:58:54 25 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.636 12:58:54 25 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:58:54 25 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:58:54 25 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:58:54 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 12:58:54 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:04:24 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 13:04:26 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:04:26 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:05:46 25 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:05:46 25 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:05:46 25 Apr 2017 UTC: ERROR: Base.py(1960): Dive [624, 627] failed to process completely. The following files were not processed completely: /home/sg626/sg0624dz.r Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) - consider resend_dive /d 624 01 /home/sg626/sg0627dz.r Fragment ./sg0627dz.x00 file size (1453) not equal to expected size (4096) - consider resend_dive /d 627 00 Glider logout seen - transmissions from glider complete Consult baselog_170425025830 for details. 13:05:46 25 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:05:46 25 Apr 2017 UTC /home/sg626/p6260636.log /home/sg626/p6260636.eng /home/sg626/p6260636.asc /home/sg626/p6260636.pro /home/sg626/p6260636.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:05:46 25 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:05:46 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:05:46 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:05:46 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:05:46 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:05:46 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:05:46 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:05:46 25 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:05:46 25 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:05:46 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:05:46 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:05:46 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:05:46 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:05:46 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:05:46 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:05:46 25 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:05:46 25 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:05:46 25 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:05:46 25 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:05:46 25 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:05:46 25 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:05:46 25 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:05:46 25 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:05:46 25 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 13:05:46 25 Apr 2017 UTC 17:00:10 25 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 19901 17:00:10 25 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:03:25 25 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 20201 17:03:25 25 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:03:25 25 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:03:25 25 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:03:25 25 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:03:25 25 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170425070324 ] 17:03:25 25 Apr 2017 UTC: INFO: Base.py(1333): PID:20209 17:03:25 25 Apr 2017 UTC: INFO: Base.py(1375): Started processing 17:03:25 25 Apr 2017 UTC 17:03:25 25 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:03:27 25 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:03:27 25 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:03:27 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:03:27 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:637 calls_made:1 call_cycle:0 17:03:27 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:03:27 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:637 calls_made:1 call_cycle:0 17:03:27 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:03:27 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:637 calls_made:1 call_cycle:0 17:03:27 25 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:637 calls_made:1 call_cycle:0 2234.1150 -15801.1910 04/25/17 16:57:31 UTC) to sdrifter@soest.hawaii.edu 17:03:27 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:637 calls_made:1 call_cycle:0 17:03:27 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:03:27 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:637 calls_made:1 call_cycle:0 17:03:27 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:03:27 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:637 calls_made:1 call_cycle:0 17:03:27 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:03:27 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:637 calls_made:1 call_cycle:0 17:03:27 25 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:03:27 25 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:03:37 25 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:03:39 25 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:03:39 25 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:03:39 25 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:03:39 25 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:03:39 25 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:03:45 25 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:03:45 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0624dz 17:03:45 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x00 17:03:45 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x01 17:03:45 25 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) 17:03:45 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x02 17:03:45 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x03 17:03:45 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x04 17:03:45 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0624dz.r in process_file_group 17:03:45 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 11 17:03:45 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 12 17:03:45 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 13 17:03:45 25 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0624dz.r - expected 0x3356983894, generated 0x764acec6 17:03:45 25 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0624dz.r - expected 0xf2ed, generated 0x9548 17:03:45 25 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0624dz.r - skipping 17:03:45 25 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0624dz - skipping 17:03:45 25 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:03:45 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0627dz 17:03:45 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x00 17:03:45 25 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0627dz.x00 file size (1453) not equal to expected size (4096) 17:03:45 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x01 17:03:45 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x02 17:03:45 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x03 17:03:45 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x04 17:03:45 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0627dz.r in process_file_group 17:03:45 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 1 17:03:45 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 2 17:03:45 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 3 17:03:45 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 4 17:03:45 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 5 17:03:45 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 6 17:03:45 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 7 17:03:45 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 8 17:03:45 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 9 17:03:45 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 10 17:03:45 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 11 17:03:45 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 12 17:03:45 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 13 17:03:45 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 14 17:03:45 25 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0627dz.r - expected 0x7468771, generated 0x34a5275b 17:03:45 25 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0627dz.r - expected 0xf9e5, generated 0x825 17:03:45 25 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0627dz.r - skipping 17:03:45 25 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0627dz - skipping 17:03:46 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0637lz 17:03:46 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0637lz.x00 17:03:46 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0637lz.x01 17:03:46 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0637lz.r in process_file_group 17:03:46 25 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260637.log 17:03:46 25 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 17:03:46 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0637dz 17:03:46 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0637dz.x00 17:03:46 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0637dz.x01 17:03:46 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0637dz.x02 17:03:46 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0637dz.x03 17:03:46 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0637dz.x04 17:03:46 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0637dz.r in process_file_group 17:03:46 25 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [637] 17:03:46 25 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [637] 17:03:46 25 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260637) for profiles 17:03:46 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 17:03:46 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/719) 717:719 to QC_BAD because CT out of water 17:03:46 25 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.099m) 17:03:46 25 Apr 2017 UTC: INFO: QC.py(365): Changed (4/719) 2 236 245 264 to QC_PROBABLY_BAD because raw temperature spikes 17:03:46 25 Apr 2017 UTC: INFO: QC.py(377): Changed (1/719) 718 to QC_BAD because raw salinity below bound 17:03:46 25 Apr 2017 UTC: INFO: QC.py(408): Changed (6/719) 2 231 236 245 264 312 to QC_PROBABLY_BAD because raw conductivity spikes 17:03:46 25 Apr 2017 UTC: INFO: QC.py(180): Changed (4/719) 2 236 245 264 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:03:46 25 Apr 2017 UTC: INFO: QC.py(180): Changed (2/719) 231 312 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 17:03:46 25 Apr 2017 UTC: INFO: QC.py(180): Changed (2/719) 717 719 to QC_BAD because changed raw cond implies changed raw salinity 17:03:46 25 Apr 2017 UTC: INFO: QC.py(365): Changed (4/719) 2 236 245 264 to QC_INTERPOLATED because temperature spikes 17:03:46 25 Apr 2017 UTC: INFO: QC.py(377): Changed (1/719) 718 to QC_BAD because salinity below bound 17:03:46 25 Apr 2017 UTC: INFO: QC.py(408): Changed (6/719) 2 231 236 245 264 312 to QC_INTERPOLATED because conductivity spikes 17:03:46 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/719) 280:284 to QC_BAD because slow apogee CT flow 17:03:46 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/719) 1:6 to QC_BAD because prior to dive start 17:03:46 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/719) 1:6 280:284 717:719 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:03:46 25 Apr 2017 UTC: INFO: QC.py(180): Changed (14/719) 1:6 280:284 717:719 to QC_BAD because changed corrected salin implies changed speed 17:03:47 25 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:03:47 25 Apr 2017 UTC: INFO: QC.py(180): Changed (3/719) 236 245 264 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 17:03:47 25 Apr 2017 UTC: INFO: QC.py(180): Changed (2/719) 231 312 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 17:03:47 25 Apr 2017 UTC: INFO: QC.py(180): Changed (3/719) 236 245 264 to QC_INTERPOLATED because changed corrected temp implies changed speed 17:03:47 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.34 cm/s 17:03:47 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.31 cm/s 17:03:47 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:03:47 25 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (212/719) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:03:47 25 Apr 2017 UTC: INFO: QC.py(180): Changed (2/719) 2 236 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:03:47 25 Apr 2017 UTC: INFO: sbe43_ext.py(293): Changed (1/719) 155 to QC_BAD because slow flow in SBE43 17:03:47 25 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (212/719) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 17:03:47 25 Apr 2017 UTC: INFO: QC.py(180): Changed (2/719) 2 236 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:03:47 25 Apr 2017 UTC: INFO: QC.py(180): Changed (14/719) 1:6 280:284 717:719 to QC_BAD because changed salinity implies changed optode oxygen 17:03:47 25 Apr 2017 UTC: INFO: QC.py(180): Changed (1/719) 231 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 17:03:47 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:03:47 25 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:03:47 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 17:03:48 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 637: Data set size for profile, binned and kkyy files reduced by 14 points, a 1.95% reduction 17:03:48 25 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.637 17:03:48 25 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:03:48 25 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:03:48 25 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:03:48 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 17:03:48 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:09:19 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 17:09:21 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:09:21 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:10:43 25 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:10:43 25 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:10:43 25 Apr 2017 UTC: ERROR: Base.py(1960): Dive [624, 627] failed to process completely. The following files were not processed completely: /home/sg626/sg0624dz.r Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) - consider resend_dive /d 624 01 /home/sg626/sg0627dz.r Fragment ./sg0627dz.x00 file size (1453) not equal to expected size (4096) - consider resend_dive /d 627 00 Glider logout seen - transmissions from glider complete Consult baselog_170425070324 for details. 17:10:43 25 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:10:43 25 Apr 2017 UTC /home/sg626/p6260637.log /home/sg626/p6260637.eng /home/sg626/p6260637.asc /home/sg626/p6260637.pro /home/sg626/p6260637.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:10:43 25 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:10:43 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:10:43 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:10:43 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:10:43 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:10:43 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:10:43 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:10:43 25 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:10:43 25 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:10:43 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:10:43 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:10:43 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:10:43 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:10:43 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:10:43 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:10:43 25 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:10:43 25 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:10:43 25 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:10:43 25 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:10:43 25 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:10:43 25 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:10:43 25 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:10:43 25 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:10:43 25 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 17:10:43 25 Apr 2017 UTC 21:17:03 25 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 28031 21:17:03 25 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:20:41 25 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 28315 21:20:41 25 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:20:41 25 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:20:41 25 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:20:41 25 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:20:41 25 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170425112040 ] 21:20:41 25 Apr 2017 UTC: INFO: Base.py(1333): PID:28323 21:20:41 25 Apr 2017 UTC: INFO: Base.py(1375): Started processing 21:20:41 25 Apr 2017 UTC 21:20:41 25 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:20:43 25 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:20:43 25 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:20:43 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:20:43 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:638 calls_made:1 call_cycle:0 21:20:43 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:20:43 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:638 calls_made:1 call_cycle:0 21:20:43 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:20:43 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:638 calls_made:1 call_cycle:0 21:20:43 25 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:638 calls_made:1 call_cycle:0 2234.0710 -15800.9770 04/25/17 21:14:24 UTC) to sdrifter@soest.hawaii.edu 21:20:43 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:638 calls_made:1 call_cycle:0 21:20:43 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:20:43 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:638 calls_made:1 call_cycle:0 21:20:43 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:20:43 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:638 calls_made:1 call_cycle:0 21:20:43 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:20:43 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:638 calls_made:1 call_cycle:0 21:20:43 25 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:20:43 25 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:20:54 25 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:20:56 25 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:20:56 25 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:20:56 25 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:20:56 25 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:20:56 25 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:21:02 25 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:21:02 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0624dz 21:21:02 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x00 21:21:02 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x01 21:21:02 25 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) 21:21:02 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x02 21:21:02 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x03 21:21:02 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x04 21:21:02 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0624dz.r in process_file_group 21:21:02 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 11 21:21:02 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 12 21:21:02 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0624dz.r (('Error -3 while decompressing: invalid block type',)) on data block 13 21:21:02 25 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0624dz.r - expected 0x3356983894, generated 0x764acec6 21:21:02 25 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0624dz.r - expected 0xf2ed, generated 0x9548 21:21:02 25 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0624dz.r - skipping 21:21:02 25 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0624dz - skipping 21:21:02 25 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:21:02 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0627dz 21:21:02 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x00 21:21:02 25 Apr 2017 UTC: WARNING: Base.py(706): Fragment ./sg0627dz.x00 file size (1453) not equal to expected size (4096) 21:21:02 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x01 21:21:02 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x02 21:21:02 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x03 21:21:02 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x04 21:21:02 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0627dz.r in process_file_group 21:21:02 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 1 21:21:02 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 2 21:21:02 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 3 21:21:02 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 4 21:21:02 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 5 21:21:02 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 6 21:21:02 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 7 21:21:02 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 8 21:21:02 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 9 21:21:02 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 10 21:21:02 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 11 21:21:02 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 12 21:21:02 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 13 21:21:02 25 Apr 2017 UTC: ERROR: BaseGZip.py(166): Error while decompressing ./sg0627dz.r (('Error -3 while decompressing: invalid distance too far back',)) on data block 14 21:21:02 25 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0627dz.r - expected 0x7468771, generated 0x34a5275b 21:21:02 25 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0627dz.r - expected 0xf9e5, generated 0x825 21:21:02 25 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0627dz.r - skipping 21:21:02 25 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0627dz - skipping 21:21:02 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0638lz 21:21:02 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0638lz.x00 21:21:02 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0638lz.x01 21:21:02 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0638lz.r in process_file_group 21:21:02 25 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260638.log 21:21:02 25 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:21:02 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0638dz 21:21:02 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0638dz.x00 21:21:02 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0638dz.x01 21:21:02 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0638dz.x02 21:21:02 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0638dz.x03 21:21:02 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0638dz.x04 21:21:02 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0638dz.r in process_file_group 21:21:02 25 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [638] 21:21:02 25 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [638] 21:21:03 25 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260638) for profiles 21:21:03 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:21:03 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (4/783) 780:783 to QC_BAD because CT out of water 21:21:03 25 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.149m) 21:21:03 25 Apr 2017 UTC: INFO: QC.py(365): Changed (4/783) 2 351 781 782 to QC_PROBABLY_BAD because raw temperature spikes 21:21:03 25 Apr 2017 UTC: INFO: QC.py(377): Changed (2/783) 782 783 to QC_BAD because raw salinity below bound 21:21:03 25 Apr 2017 UTC: INFO: QC.py(180): Changed (3/783) 2 351 781 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:21:03 25 Apr 2017 UTC: INFO: QC.py(180): Changed (2/783) 780 781 to QC_BAD because changed raw cond implies changed raw salinity 21:21:03 25 Apr 2017 UTC: INFO: QC.py(365): Changed (4/783) 2 351 781 782 to QC_INTERPOLATED because temperature spikes 21:21:03 25 Apr 2017 UTC: INFO: QC.py(377): Changed (2/783) 782 783 to QC_BAD because salinity below bound 21:21:03 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/783) 304:308 to QC_BAD because slow apogee CT flow 21:21:03 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/783) 1:6 to QC_BAD because prior to dive start 21:21:03 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/783) 779 to QC_BAD because end of climb 21:21:03 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/783) 1:6 304:308 779:783 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:21:03 25 Apr 2017 UTC: INFO: QC.py(180): Changed (16/783) 1:6 304:308 779:783 to QC_BAD because changed corrected salin implies changed speed 21:21:04 25 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:21:04 25 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 638 interp_salinity data_points in_between 165 208 % suspect thermal-inertia points 167 21:21:04 25 Apr 2017 UTC: INFO: QC.py(180): Changed (1/783) 351 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 21:21:04 25 Apr 2017 UTC: INFO: QC.py(180): Changed (1/783) 351 to QC_INTERPOLATED because changed corrected temp implies changed speed 21:21:04 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 28.23 cm/s 21:21:04 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.31 cm/s 21:21:04 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:21:04 25 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (221/783) 169 170 172:175 177:180 182:185 187:190 192:195 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:21:04 25 Apr 2017 UTC: INFO: QC.py(180): Changed (4/783) 2 351 781 782 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:21:04 25 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (221/783) 169 170 172:175 177:180 182:185 187:190 192:195 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:21:04 25 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/783) 780 to QC_BAD because bad aa4330 oyxgen 21:21:04 25 Apr 2017 UTC: INFO: QC.py(180): Changed (4/783) 2 351 781 782 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:21:04 25 Apr 2017 UTC: INFO: QC.py(180): Changed (15/783) 1:6 304:308 779 781:783 to QC_BAD because changed salinity implies changed optode oxygen 21:21:04 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:21:04 25 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:21:04 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:21:04 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 638: Data set size for profile, binned and kkyy files reduced by 16 points, a 2.04% reduction 21:21:04 25 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.638 21:21:04 25 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:21:04 25 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:21:04 25 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:21:05 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:21:05 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 21:26:36 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 21:26:38 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 21:26:38 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 21:27:59 25 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:27:59 25 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:27:59 25 Apr 2017 UTC: ERROR: Base.py(1960): Dive [624, 627] failed to process completely. The following files were not processed completely: /home/sg626/sg0624dz.r Fragment ./sg0624dz.x01 file size (833) not equal to expected size (4096) - consider resend_dive /d 624 01 /home/sg626/sg0627dz.r Fragment ./sg0627dz.x00 file size (1453) not equal to expected size (4096) - consider resend_dive /d 627 00 Glider logout seen - transmissions from glider complete Consult baselog_170425112040 for details. 21:27:59 25 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:27:59 25 Apr 2017 UTC /home/sg626/p6260638.log /home/sg626/p6260638.eng /home/sg626/p6260638.asc /home/sg626/p6260638.pro /home/sg626/p6260638.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 21:27:59 25 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:27:59 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:27:59 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:27:59 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:27:59 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:27:59 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:27:59 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:27:59 25 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:27:59 25 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:27:59 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:27:59 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:27:59 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:28:00 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:28:00 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:28:00 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:28:00 25 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:28:00 25 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:28:00 25 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:28:00 25 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:28:00 25 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:28:00 25 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:28:00 25 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:28:00 25 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:28:00 25 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 21:28:00 25 Apr 2017 UTC 22:51:34 25 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 31341 22:51:34 25 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {TP} 22:59:27 25 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 31525 22:59:27 25 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:59:27 25 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:59:27 25 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:59:27 25 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:59:27 25 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170425125926 ] 22:59:27 25 Apr 2017 UTC: INFO: Base.py(1333): PID:31532 22:59:27 25 Apr 2017 UTC: INFO: Base.py(1375): Started processing 22:59:27 25 Apr 2017 UTC 22:59:27 25 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:59:29 25 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:59:29 25 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:59:29 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:59:29 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:639 calls_made:1 call_cycle:0 22:59:29 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:59:29 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:639 calls_made:1 call_cycle:0 22:59:29 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:59:29 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:639 calls_made:1 call_cycle:0 22:59:29 25 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:639 calls_made:1 call_cycle:0 2233.9210 -15801.2680 04/25/17 22:49:20 UTC) to sdrifter@soest.hawaii.edu 22:59:29 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:639 calls_made:1 call_cycle:0 22:59:29 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:59:29 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:639 calls_made:1 call_cycle:0 22:59:29 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:59:29 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:639 calls_made:1 call_cycle:0 22:59:29 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:59:29 25 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:639 calls_made:1 call_cycle:0 22:59:29 25 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:59:29 25 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:59:39 25 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:59:41 25 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:59:41 25 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:59:41 25 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:59:41 25 Apr 2017 UTC: INFO: Base.py(743): Processing ./sg0639pz.000 22:59:41 25 Apr 2017 UTC: INFO: Base.py(1593): Processed pdos logfile(s) ['sg0639pz.000'] 22:59:41 25 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:59:47 25 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 22:59:47 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0624dz 22:59:47 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x00 22:59:47 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x01 22:59:47 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x02 22:59:47 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x03 22:59:47 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0624dz.x04 22:59:47 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0624dz.r in process_file_group 22:59:48 25 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 22:59:48 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0627dz 22:59:48 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x00 22:59:48 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x01 22:59:48 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x02 22:59:48 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x03 22:59:48 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0627dz.x04 22:59:48 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0627dz.r in process_file_group 22:59:48 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0639lz 22:59:48 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0639lz.x00 22:59:48 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0639lz.r in process_file_group 22:59:48 25 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260639.log 22:59:48 25 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 22:59:48 25 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0639dz 22:59:48 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0639dz.x00 22:59:48 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0639dz.x01 22:59:48 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0639dz.x02 22:59:48 25 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0639dz.x03 22:59:48 25 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0639dz.r in process_file_group 22:59:49 25 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [624, 627, 639] 22:59:49 25 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [624, 627, 639] 22:59:49 25 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260624) for profiles 22:59:49 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 22:59:49 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/687) 687 to QC_BAD because CT out of water 22:59:49 25 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.060m) 22:59:49 25 Apr 2017 UTC: INFO: QC.py(365): Changed (2/687) 2 524 to QC_PROBABLY_BAD because raw temperature spikes 22:59:49 25 Apr 2017 UTC: INFO: QC.py(408): Changed (1/687) 524 to QC_PROBABLY_BAD because raw conductivity spikes 22:59:49 25 Apr 2017 UTC: INFO: QC.py(180): Changed (2/687) 2 524 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 22:59:49 25 Apr 2017 UTC: INFO: QC.py(180): Changed (1/687) 687 to QC_BAD because changed raw cond implies changed raw salinity 22:59:49 25 Apr 2017 UTC: INFO: QC.py(365): Changed (2/687) 2 524 to QC_INTERPOLATED because temperature spikes 22:59:49 25 Apr 2017 UTC: INFO: QC.py(408): Changed (1/687) 524 to QC_INTERPOLATED because conductivity spikes 22:59:49 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/687) 267:271 to QC_BAD because slow apogee CT flow 22:59:49 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/687) 1:6 to QC_BAD because prior to dive start 22:59:49 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/687) 686 to QC_BAD because end of climb 22:59:49 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/687) 1:6 267:271 686 687 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:59:49 25 Apr 2017 UTC: INFO: QC.py(180): Changed (13/687) 1:6 267:271 686 687 to QC_BAD because changed corrected salin implies changed speed 22:59:50 25 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:59:50 25 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 624 interp_salinity data_points in_between 354 407 % suspect thermal-inertia points 394 395 22:59:50 25 Apr 2017 UTC: INFO: QC.py(180): Changed (1/687) 524 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 22:59:50 25 Apr 2017 UTC: INFO: QC.py(180): Changed (1/687) 524 to QC_INTERPOLATED because changed corrected temp implies changed speed 22:59:50 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.54 cm/s 22:59:50 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.39 cm/s 22:59:50 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:59:50 25 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (207/687) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:59:50 25 Apr 2017 UTC: INFO: QC.py(180): Changed (2/687) 2 524 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 22:59:50 25 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (207/687) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 22:59:50 25 Apr 2017 UTC: INFO: QC.py(180): Changed (2/687) 2 524 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 22:59:50 25 Apr 2017 UTC: INFO: QC.py(180): Changed (13/687) 1:6 267:271 686 687 to QC_BAD because changed salinity implies changed optode oxygen 22:59:50 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:59:50 25 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 22:59:50 25 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 22:59:50 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 624: Data set size for profile, binned and kkyy files reduced by 13 points, a 1.89% reduction 22:59:51 25 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260627) for profiles 22:59:51 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 22:59:51 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (4/707) 704:707 to QC_BAD because CT out of water 22:59:51 25 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.094m) 22:59:51 25 Apr 2017 UTC: INFO: QC.py(365): Changed (2/707) 2 706 to QC_PROBABLY_BAD because raw temperature spikes 22:59:51 25 Apr 2017 UTC: INFO: QC.py(377): Changed (1/707) 707 to QC_BAD because raw salinity below bound 22:59:51 25 Apr 2017 UTC: INFO: QC.py(180): Changed (2/707) 2 706 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 22:59:51 25 Apr 2017 UTC: INFO: QC.py(180): Changed (3/707) 704:706 to QC_BAD because changed raw cond implies changed raw salinity 22:59:51 25 Apr 2017 UTC: INFO: QC.py(365): Changed (2/707) 2 706 to QC_INTERPOLATED because temperature spikes 22:59:51 25 Apr 2017 UTC: INFO: QC.py(377): Changed (1/707) 707 to QC_BAD because salinity below bound 22:59:51 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/707) 272:276 to QC_BAD because slow apogee CT flow 22:59:51 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/707) 1:6 to QC_BAD because prior to dive start 22:59:51 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/707) 703 to QC_BAD because end of climb 22:59:51 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/707) 1:6 272:276 703:707 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:59:51 25 Apr 2017 UTC: INFO: QC.py(180): Changed (16/707) 1:6 272:276 703:707 to QC_BAD because changed corrected salin implies changed speed 22:59:52 25 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:59:52 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.37 cm/s 22:59:52 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.40 cm/s 22:59:52 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:59:52 25 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (211/707) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:59:52 25 Apr 2017 UTC: INFO: QC.py(180): Changed (2/707) 2 706 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 22:59:52 25 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (211/707) 148:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 22:59:52 25 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (3/707) 699 700 705 to QC_BAD because bad aa4330 oyxgen 22:59:52 25 Apr 2017 UTC: INFO: QC.py(180): Changed (2/707) 2 706 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 22:59:52 25 Apr 2017 UTC: INFO: QC.py(180): Changed (15/707) 1:6 272:276 703 704 706 707 to QC_BAD because changed salinity implies changed optode oxygen 22:59:52 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:59:52 25 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 22:59:52 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 627: Data set size for profile, binned and kkyy files reduced by 16 points, a 2.26% reduction 22:59:52 25 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260639) for profiles 22:59:52 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 22:59:52 25 Apr 2017 UTC: INFO: QC.py(365): Changed (2/443) 2 185 to QC_PROBABLY_BAD because raw temperature spikes 22:59:52 25 Apr 2017 UTC: INFO: QC.py(408): Changed (1/443) 185 to QC_PROBABLY_BAD because raw conductivity spikes 22:59:52 25 Apr 2017 UTC: INFO: QC.py(180): Changed (2/443) 2 185 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 22:59:52 25 Apr 2017 UTC: INFO: QC.py(365): Changed (2/443) 2 185 to QC_INTERPOLATED because temperature spikes 22:59:52 25 Apr 2017 UTC: INFO: QC.py(408): Changed (1/443) 185 to QC_INTERPOLATED because conductivity spikes 22:59:52 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/443) 183:187 to QC_BAD because slow apogee CT flow 22:59:52 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/443) 1:6 to QC_BAD because prior to dive start 22:59:52 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/443) 442 443 to QC_BAD because end of climb 22:59:52 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/443) 1:6 183:187 442 443 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:59:52 25 Apr 2017 UTC: INFO: QC.py(180): Changed (13/443) 1:6 183:187 442 443 to QC_BAD because changed corrected salin implies changed speed 22:59:52 25 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:59:52 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.51 cm/s 22:59:52 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.79 cm/s 22:59:52 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:59:52 25 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (43/443) 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:59:52 25 Apr 2017 UTC: INFO: QC.py(180): Changed (1/443) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 22:59:52 25 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (43/443) 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 22:59:52 25 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/443) 437 to QC_BAD because bad aa4330 oyxgen 22:59:52 25 Apr 2017 UTC: INFO: QC.py(180): Changed (1/443) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 22:59:52 25 Apr 2017 UTC: INFO: QC.py(180): Changed (13/443) 1:6 183:187 442 443 to QC_BAD because changed salinity implies changed optode oxygen 22:59:52 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:59:53 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 639: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.93% reduction 22:59:53 25 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.639 22:59:53 25 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./pdoscmds.bat to ./pdoscmds.bat.639 22:59:53 25 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.639 22:59:53 25 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:59:53 25 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:59:53 25 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:59:53 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 22:59:53 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 23:05:27 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 23:05:29 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 23:05:29 25 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 23:06:51 25 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:06:51 25 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:06:51 25 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:06:51 25 Apr 2017 UTC /home/sg626/p6260624.eng /home/sg626/p6260627.eng /home/sg626/p6260639.log /home/sg626/p6260639.eng /home/sg626/p6260624.asc /home/sg626/p6260627.asc /home/sg626/p6260639.asc /home/sg626/p6260624.pro /home/sg626/p6260624.nc /home/sg626/p6260627.pro /home/sg626/p6260627.nc /home/sg626/p6260639.pro /home/sg626/p6260639.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 23:06:51 25 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:06:51 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:06:51 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:06:51 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:06:51 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:06:51 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:06:51 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:06:51 25 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:06:51 25 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:06:51 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:06:51 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:06:51 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:06:51 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:06:51 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:06:51 25 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:06:51 25 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:06:51 25 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:06:51 25 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:06:51 25 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:06:51 25 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:06:51 25 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:06:51 25 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:06:51 25 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:06:51 25 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 23:06:51 25 Apr 2017 UTC 00:29:43 26 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 2229 00:29:44 26 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:32:27 26 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 2556 00:32:27 26 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:32:27 26 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:32:27 26 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:32:27 26 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:32:27 26 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170425143227 ] 00:32:27 26 Apr 2017 UTC: INFO: Base.py(1333): PID:2563 00:32:27 26 Apr 2017 UTC: INFO: Base.py(1375): Started processing 00:32:27 26 Apr 2017 UTC 00:32:27 26 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:32:29 26 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:32:29 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:32:29 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:32:29 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:640 calls_made:1 call_cycle:0 00:32:29 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:32:29 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:640 calls_made:1 call_cycle:0 00:32:29 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:32:29 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:640 calls_made:1 call_cycle:0 00:32:29 26 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:640 calls_made:1 call_cycle:0 2234.8670 -15801.8770 04/26/17 00:27:27 UTC) to sdrifter@soest.hawaii.edu 00:32:29 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:640 calls_made:1 call_cycle:0 00:32:29 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:32:29 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:640 calls_made:1 call_cycle:0 00:32:29 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:32:29 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:640 calls_made:1 call_cycle:0 00:32:29 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:32:29 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:640 calls_made:1 call_cycle:0 00:32:29 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:32:29 26 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:32:40 26 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:32:42 26 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:32:42 26 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:32:42 26 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:32:42 26 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:32:42 26 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:32:48 26 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0640lz 00:32:48 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0640lz.x00 00:32:48 26 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0640lz.r in process_file_group 00:32:48 26 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260640.log 00:32:48 26 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:32:48 26 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0640dz 00:32:48 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0640dz.x00 00:32:48 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0640dz.x01 00:32:48 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0640dz.x02 00:32:48 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0640dz.x03 00:32:48 26 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0640dz.r in process_file_group 00:32:48 26 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [640] 00:32:48 26 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [640] 00:32:49 26 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260640) for profiles 00:32:49 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 00:32:49 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/446) 444 446 to QC_BAD because CT out of water 00:32:49 26 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.151m) 00:32:49 26 Apr 2017 UTC: INFO: QC.py(365): Changed (2/446) 2 445 to QC_PROBABLY_BAD because raw temperature spikes 00:32:49 26 Apr 2017 UTC: INFO: QC.py(408): Changed (1/446) 3 to QC_PROBABLY_BAD because raw conductivity spikes 00:32:49 26 Apr 2017 UTC: INFO: QC.py(180): Changed (2/446) 2 445 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:32:49 26 Apr 2017 UTC: INFO: QC.py(180): Changed (1/446) 3 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 00:32:49 26 Apr 2017 UTC: INFO: QC.py(180): Changed (2/446) 444 446 to QC_BAD because changed raw cond implies changed raw salinity 00:32:49 26 Apr 2017 UTC: INFO: QC.py(365): Changed (2/446) 2 445 to QC_INTERPOLATED because temperature spikes 00:32:49 26 Apr 2017 UTC: INFO: QC.py(408): Changed (1/446) 3 to QC_INTERPOLATED because conductivity spikes 00:32:49 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/446) 181:186 to QC_BAD because slow apogee CT flow 00:32:49 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/446) 1:6 to QC_BAD because prior to dive start 00:32:49 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/446) 445 to QC_BAD because end of climb 00:32:49 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/446) 1:6 181:186 444:446 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:32:49 26 Apr 2017 UTC: INFO: QC.py(180): Changed (15/446) 1:6 181:186 444:446 to QC_BAD because changed corrected salin implies changed speed 00:32:49 26 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:32:49 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.36 cm/s 00:32:49 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.05 cm/s 00:32:49 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:32:49 26 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (40/446) 160 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:32:49 26 Apr 2017 UTC: INFO: QC.py(180): Changed (2/446) 2 445 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:32:49 26 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (40/446) 160 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 00:32:49 26 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/446) 443 to QC_BAD because bad aa4330 oyxgen 00:32:49 26 Apr 2017 UTC: INFO: QC.py(180): Changed (2/446) 2 445 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:32:49 26 Apr 2017 UTC: INFO: QC.py(180): Changed (15/446) 1:6 181:186 444:446 to QC_BAD because changed salinity implies changed optode oxygen 00:32:49 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:32:49 26 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:32:49 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 00:32:50 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 640: Data set size for profile, binned and kkyy files reduced by 15 points, a 3.36% reduction 00:32:50 26 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.640 00:32:50 26 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:32:50 26 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:32:50 26 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:32:50 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 00:32:50 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 00:38:21 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 00:38:24 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 00:38:24 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 00:39:46 26 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:39:46 26 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:39:46 26 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:39:46 26 Apr 2017 UTC /home/sg626/p6260640.log /home/sg626/p6260640.eng /home/sg626/p6260640.asc /home/sg626/p6260640.pro /home/sg626/p6260640.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 00:39:46 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:39:46 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:39:46 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:39:46 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:39:46 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:39:46 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:39:46 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:39:46 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:39:46 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:39:46 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:39:46 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:39:46 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:39:46 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:39:46 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:39:46 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:39:46 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:39:46 26 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:39:46 26 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:39:46 26 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:39:46 26 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:39:46 26 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:39:46 26 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:39:46 26 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:39:46 26 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 00:39:46 26 Apr 2017 UTC 02:06:46 26 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 5626 02:06:46 26 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:09:21 26 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 5733 02:09:21 26 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:09:21 26 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:09:21 26 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:09:21 26 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:09:21 26 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170425160921 ] 02:09:21 26 Apr 2017 UTC: INFO: Base.py(1333): PID:5741 02:09:21 26 Apr 2017 UTC: INFO: Base.py(1375): Started processing 02:09:21 26 Apr 2017 UTC 02:09:21 26 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:09:23 26 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:09:23 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:09:23 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:09:23 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:641 calls_made:1 call_cycle:0 02:09:23 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:09:23 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:641 calls_made:1 call_cycle:0 02:09:23 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:09:23 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:641 calls_made:1 call_cycle:0 02:09:23 26 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:641 calls_made:1 call_cycle:0 2235.7370 -15802.2010 04/26/17 02:04:30 UTC) to sdrifter@soest.hawaii.edu 02:09:23 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:641 calls_made:1 call_cycle:0 02:09:23 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:09:23 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:641 calls_made:1 call_cycle:0 02:09:23 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:09:23 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:641 calls_made:1 call_cycle:0 02:09:23 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:09:23 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:641 calls_made:1 call_cycle:0 02:09:23 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:09:23 26 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:09:34 26 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:09:35 26 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:09:35 26 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:09:35 26 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:09:35 26 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:09:35 26 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:09:42 26 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0641lz 02:09:42 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0641lz.x00 02:09:42 26 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0641lz.r in process_file_group 02:09:42 26 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260641.log 02:09:42 26 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 02:09:42 26 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0641dz 02:09:42 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0641dz.x00 02:09:42 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0641dz.x01 02:09:42 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0641dz.x02 02:09:42 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0641dz.x03 02:09:42 26 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0641dz.r in process_file_group 02:09:42 26 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [641] 02:09:42 26 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [641] 02:09:42 26 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260641) for profiles 02:09:42 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 02:09:43 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/456) 455 to QC_BAD because CT out of water 02:09:43 26 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.085m) 02:09:43 26 Apr 2017 UTC: INFO: QC.py(365): Changed (2/456) 2 5 to QC_PROBABLY_BAD because raw temperature spikes 02:09:43 26 Apr 2017 UTC: INFO: QC.py(180): Changed (2/456) 2 5 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:09:43 26 Apr 2017 UTC: INFO: QC.py(180): Changed (1/456) 455 to QC_BAD because changed raw cond implies changed raw salinity 02:09:43 26 Apr 2017 UTC: INFO: QC.py(365): Changed (2/456) 2 5 to QC_INTERPOLATED because temperature spikes 02:09:43 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (4/456) 180:183 to QC_BAD because slow apogee CT flow 02:09:43 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/456) 1:6 to QC_BAD because prior to dive start 02:09:43 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/456) 456 to QC_BAD because end of climb 02:09:43 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/456) 1:6 180:183 455 456 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:09:43 26 Apr 2017 UTC: INFO: QC.py(180): Changed (12/456) 1:6 180:183 455 456 to QC_BAD because changed corrected salin implies changed speed 02:09:43 26 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:09:43 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.61 cm/s 02:09:43 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.79 cm/s 02:09:43 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:09:43 26 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (44/456) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:09:43 26 Apr 2017 UTC: INFO: QC.py(180): Changed (2/456) 2 5 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:09:43 26 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (44/456) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 02:09:43 26 Apr 2017 UTC: INFO: QC.py(180): Changed (2/456) 2 5 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:09:43 26 Apr 2017 UTC: INFO: QC.py(180): Changed (12/456) 1:6 180:183 455 456 to QC_BAD because changed salinity implies changed optode oxygen 02:09:43 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:09:43 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 02:09:44 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 641: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.63% reduction 02:09:44 26 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.641 02:09:44 26 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:09:44 26 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:09:44 26 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:09:44 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 02:09:44 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 02:15:17 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 02:15:19 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 02:15:19 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 02:16:41 26 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:16:41 26 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:16:41 26 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:16:41 26 Apr 2017 UTC /home/sg626/p6260641.log /home/sg626/p6260641.eng /home/sg626/p6260641.asc /home/sg626/p6260641.pro /home/sg626/p6260641.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 02:16:41 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:16:41 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:16:41 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:16:41 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:16:41 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:16:41 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:16:41 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:16:41 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:16:41 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:16:41 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:16:41 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:16:41 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:16:41 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:16:41 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:16:41 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:16:41 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:16:41 26 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:16:41 26 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:16:41 26 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:16:41 26 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:16:41 26 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:16:41 26 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:16:41 26 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:16:42 26 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 02:16:42 26 Apr 2017 UTC 03:37:03 26 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 8535 03:37:03 26 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:40:43 26 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 8820 03:40:43 26 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:40:43 26 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:40:43 26 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:40:43 26 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:40:43 26 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170425174042 ] 03:40:43 26 Apr 2017 UTC: INFO: Base.py(1333): PID:8828 03:40:43 26 Apr 2017 UTC: INFO: Base.py(1375): Started processing 03:40:43 26 Apr 2017 UTC 03:40:43 26 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:40:45 26 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:40:45 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:40:45 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:40:45 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:642 calls_made:1 call_cycle:0 03:40:45 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:40:45 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:642 calls_made:1 call_cycle:0 03:40:45 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:40:45 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:642 calls_made:1 call_cycle:0 03:40:45 26 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:642 calls_made:1 call_cycle:0 2236.4320 -15802.2520 04/26/17 03:34:47 UTC) to sdrifter@soest.hawaii.edu 03:40:45 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:642 calls_made:1 call_cycle:0 03:40:45 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:40:45 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:642 calls_made:1 call_cycle:0 03:40:45 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:40:45 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:642 calls_made:1 call_cycle:0 03:40:45 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:40:45 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:642 calls_made:1 call_cycle:0 03:40:45 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:40:45 26 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:40:55 26 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:40:57 26 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:40:57 26 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:40:57 26 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:40:57 26 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:40:57 26 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:41:03 26 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0642lz 03:41:03 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0642lz.x00 03:41:03 26 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0642lz.r in process_file_group 03:41:03 26 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260642.log 03:41:03 26 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:41:03 26 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0642dz 03:41:03 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0642dz.x00 03:41:03 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0642dz.x01 03:41:03 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0642dz.x02 03:41:03 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0642dz.x03 03:41:03 26 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0642dz.r in process_file_group 03:41:04 26 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [642] 03:41:04 26 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [642] 03:41:04 26 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260642) for profiles 03:41:04 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 03:41:04 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (4/461) 458:461 to QC_BAD because CT out of water 03:41:04 26 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.156m) 03:41:04 26 Apr 2017 UTC: INFO: QC.py(365): Changed (2/461) 191 460 to QC_PROBABLY_BAD because raw temperature spikes 03:41:04 26 Apr 2017 UTC: INFO: QC.py(377): Changed (1/461) 461 to QC_BAD because raw salinity below bound 03:41:04 26 Apr 2017 UTC: INFO: QC.py(408): Changed (1/461) 191 to QC_PROBABLY_BAD because raw conductivity spikes 03:41:04 26 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <43 pt uncorrectable 183.8m SUSPECT weak conductivity anomaly n:-0.39 p:0.53> 03:41:04 26 Apr 2017 UTC: INFO: QC.py(180): Changed (2/461) 191 460 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 03:41:04 26 Apr 2017 UTC: INFO: QC.py(180): Changed (3/461) 458:460 to QC_BAD because changed raw cond implies changed raw salinity 03:41:04 26 Apr 2017 UTC: INFO: QC.py(365): Changed (2/461) 191 460 to QC_INTERPOLATED because temperature spikes 03:41:04 26 Apr 2017 UTC: INFO: QC.py(377): Changed (1/461) 461 to QC_BAD because salinity below bound 03:41:04 26 Apr 2017 UTC: INFO: QC.py(408): Changed (1/461) 191 to QC_INTERPOLATED because conductivity spikes 03:41:04 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/461) 189:193 to QC_BAD because slow apogee CT flow 03:41:04 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/461) 1:6 to QC_BAD because prior to dive start 03:41:04 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/461) 1:6 189:193 458:461 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:41:04 26 Apr 2017 UTC: INFO: QC.py(180): Changed (15/461) 1:6 189:193 458:461 to QC_BAD because changed corrected salin implies changed speed 03:41:05 26 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 03:41:05 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.76 cm/s 03:41:05 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.88 cm/s 03:41:05 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:41:05 26 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (36/461) 168:170 172:175 177:180 182:185 187:190 192:195 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:41:05 26 Apr 2017 UTC: INFO: QC.py(180): Changed (2/461) 191 460 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:41:05 26 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (36/461) 168:170 172:175 177:180 182:185 187:190 192:195 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 03:41:05 26 Apr 2017 UTC: INFO: QC.py(180): Changed (2/461) 191 460 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 03:41:05 26 Apr 2017 UTC: INFO: QC.py(180): Changed (15/461) 1:6 189:193 458:461 to QC_BAD because changed salinity implies changed optode oxygen 03:41:05 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:41:05 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 03:41:05 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 642: Data set size for profile, binned and kkyy files reduced by 15 points, a 3.25% reduction 03:41:05 26 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.642 03:41:05 26 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:41:05 26 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:41:05 26 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:41:05 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 03:41:05 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 03:46:40 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 03:46:42 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 03:46:42 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 03:48:05 26 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:48:05 26 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:48:05 26 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:48:05 26 Apr 2017 UTC /home/sg626/p6260642.log /home/sg626/p6260642.eng /home/sg626/p6260642.asc /home/sg626/p6260642.pro /home/sg626/p6260642.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 03:48:05 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:48:05 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:48:05 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:48:05 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:48:05 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:48:05 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:48:05 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:48:05 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:48:05 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:48:05 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:48:05 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:48:05 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:48:05 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:48:05 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:48:05 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:48:05 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:48:05 26 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:48:05 26 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:48:05 26 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:48:05 26 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:48:05 26 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:48:05 26 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:48:05 26 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:48:05 26 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 03:48:05 26 Apr 2017 UTC 05:14:02 26 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 11902 05:14:02 26 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:16:40 26 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 11992 05:16:40 26 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:16:40 26 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:16:40 26 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:16:40 26 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:16:40 26 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170425191639 ] 05:16:40 26 Apr 2017 UTC: INFO: Base.py(1333): PID:11999 05:16:40 26 Apr 2017 UTC: INFO: Base.py(1375): Started processing 05:16:40 26 Apr 2017 UTC 05:16:40 26 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:16:42 26 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:16:42 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:16:42 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:16:42 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:643 calls_made:1 call_cycle:0 05:16:42 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:16:42 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:643 calls_made:1 call_cycle:0 05:16:42 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:16:42 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:643 calls_made:1 call_cycle:0 05:16:42 26 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:643 calls_made:1 call_cycle:0 2237.0520 -15802.4670 04/26/17 05:11:22 UTC) to sdrifter@soest.hawaii.edu 05:16:42 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:643 calls_made:1 call_cycle:0 05:16:42 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:16:42 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:643 calls_made:1 call_cycle:0 05:16:42 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:16:42 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:643 calls_made:1 call_cycle:0 05:16:42 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:16:42 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:643 calls_made:1 call_cycle:0 05:16:42 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:16:42 26 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:16:53 26 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:16:54 26 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:16:54 26 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:16:54 26 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:16:54 26 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:16:54 26 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:17:01 26 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0643lz 05:17:01 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0643lz.x00 05:17:01 26 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0643lz.r in process_file_group 05:17:01 26 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260643.log 05:17:01 26 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:17:01 26 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0643dz 05:17:01 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0643dz.x00 05:17:01 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0643dz.x01 05:17:01 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0643dz.x02 05:17:01 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0643dz.x03 05:17:01 26 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0643dz.r in process_file_group 05:17:01 26 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [643] 05:17:01 26 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [643] 05:17:01 26 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260643) for profiles 05:17:01 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:17:01 26 Apr 2017 UTC: INFO: QC.py(365): Changed (2/467) 2 3 to QC_PROBABLY_BAD because raw temperature spikes 05:17:01 26 Apr 2017 UTC: INFO: QC.py(180): Changed (2/467) 2 3 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:17:01 26 Apr 2017 UTC: INFO: QC.py(365): Changed (2/467) 2 3 to QC_INTERPOLATED because temperature spikes 05:17:01 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (4/467) 182:185 to QC_BAD because slow apogee CT flow 05:17:01 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/467) 1:6 to QC_BAD because prior to dive start 05:17:01 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (10/467) 1:6 182:185 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:17:01 26 Apr 2017 UTC: INFO: QC.py(180): Changed (10/467) 1:6 182:185 to QC_BAD because changed corrected salin implies changed speed 05:17:02 26 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:17:02 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.43 cm/s 05:17:02 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.69 cm/s 05:17:02 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:17:02 26 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (41/467) 160 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:17:02 26 Apr 2017 UTC: INFO: QC.py(180): Changed (2/467) 2 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:17:02 26 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (41/467) 160 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:17:02 26 Apr 2017 UTC: INFO: QC.py(180): Changed (2/467) 2 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:17:02 26 Apr 2017 UTC: INFO: QC.py(180): Changed (10/467) 1:6 182:185 to QC_BAD because changed salinity implies changed optode oxygen 05:17:02 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:17:02 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 05:17:02 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 643: Data set size for profile, binned and kkyy files reduced by 10 points, a 2.14% reduction 05:17:02 26 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.643 05:17:02 26 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:17:02 26 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:17:02 26 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:17:03 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 05:17:03 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 05:22:35 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 05:22:37 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 05:22:37 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 05:24:00 26 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:24:00 26 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:24:00 26 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:24:00 26 Apr 2017 UTC /home/sg626/p6260643.log /home/sg626/p6260643.eng /home/sg626/p6260643.asc /home/sg626/p6260643.pro /home/sg626/p6260643.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 05:24:00 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:24:00 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:24:00 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:24:00 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:24:00 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:24:00 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:24:00 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:24:00 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:24:00 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:24:00 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:24:00 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:24:00 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:24:00 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:24:00 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:24:00 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:24:00 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:24:00 26 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:24:00 26 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:24:00 26 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:24:00 26 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:24:00 26 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:24:00 26 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:24:00 26 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:24:00 26 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 05:24:00 26 Apr 2017 UTC 06:54:04 26 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 16446 06:54:04 26 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:56:44 26 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 16615 06:56:44 26 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:56:44 26 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 06:56:44 26 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 06:56:44 26 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:56:44 26 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170425205643 ] 06:56:44 26 Apr 2017 UTC: INFO: Base.py(1333): PID:16622 06:56:44 26 Apr 2017 UTC: INFO: Base.py(1375): Started processing 06:56:44 26 Apr 2017 UTC 06:56:44 26 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 06:56:46 26 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 06:56:46 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:56:46 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:56:46 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:644 calls_made:1 call_cycle:0 06:56:46 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:56:46 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:644 calls_made:1 call_cycle:0 06:56:46 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:56:46 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:644 calls_made:1 call_cycle:0 06:56:46 26 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:644 calls_made:1 call_cycle:0 2237.4750 -15802.6700 04/26/17 06:51:25 UTC) to sdrifter@soest.hawaii.edu 06:56:46 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:644 calls_made:1 call_cycle:0 06:56:46 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:56:46 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:644 calls_made:1 call_cycle:0 06:56:46 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:56:46 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:644 calls_made:1 call_cycle:0 06:56:46 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:56:46 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:644 calls_made:1 call_cycle:0 06:56:46 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:56:46 26 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:56:56 26 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:56:58 26 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:56:58 26 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 06:56:58 26 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:56:58 26 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:56:58 26 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 06:57:05 26 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0644lz 06:57:05 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0644lz.x00 06:57:05 26 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0644lz.r in process_file_group 06:57:05 26 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260644.log 06:57:05 26 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 06:57:05 26 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0644dz 06:57:05 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0644dz.x00 06:57:05 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0644dz.x01 06:57:05 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0644dz.x02 06:57:05 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0644dz.x03 06:57:05 26 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0644dz.r in process_file_group 06:57:05 26 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [644] 06:57:05 26 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [644] 06:57:05 26 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260644) for profiles 06:57:05 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 06:57:05 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/482) 482 to QC_BAD because CT out of water 06:57:05 26 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.003m) 06:57:05 26 Apr 2017 UTC: INFO: QC.py(365): Changed (3/482) 2 3 186 to QC_PROBABLY_BAD because raw temperature spikes 06:57:05 26 Apr 2017 UTC: INFO: QC.py(180): Changed (3/482) 2 3 186 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 06:57:05 26 Apr 2017 UTC: INFO: QC.py(180): Changed (1/482) 482 to QC_BAD because changed raw cond implies changed raw salinity 06:57:05 26 Apr 2017 UTC: INFO: QC.py(365): Changed (3/482) 2 3 186 to QC_INTERPOLATED because temperature spikes 06:57:05 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (4/482) 184:187 to QC_BAD because slow apogee CT flow 06:57:05 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/482) 1:6 to QC_BAD because prior to dive start 06:57:05 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/482) 480 481 to QC_BAD because end of climb 06:57:05 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/482) 1:6 184:187 480:482 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 06:57:05 26 Apr 2017 UTC: INFO: QC.py(180): Changed (13/482) 1:6 184:187 480:482 to QC_BAD because changed corrected salin implies changed speed 06:57:06 26 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 06:57:06 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.00 cm/s 06:57:06 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.72 cm/s 06:57:06 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 06:57:06 26 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (44/482) 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 06:57:06 26 Apr 2017 UTC: INFO: QC.py(180): Changed (3/482) 2 3 186 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 06:57:06 26 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (44/482) 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 06:57:06 26 Apr 2017 UTC: INFO: QC.py(180): Changed (3/482) 2 3 186 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 06:57:06 26 Apr 2017 UTC: INFO: QC.py(180): Changed (13/482) 1:6 184:187 480:482 to QC_BAD because changed salinity implies changed optode oxygen 06:57:06 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 06:57:06 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 06:57:06 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 644: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.70% reduction 06:57:06 26 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.644 06:57:06 26 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:57:06 26 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:57:06 26 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:57:07 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 06:57:07 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:02:39 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 07:02:41 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:02:41 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:04:03 26 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:04:03 26 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:04:03 26 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:04:03 26 Apr 2017 UTC /home/sg626/p6260644.log /home/sg626/p6260644.eng /home/sg626/p6260644.asc /home/sg626/p6260644.pro /home/sg626/p6260644.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:04:03 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:04:03 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:04:03 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:04:03 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:04:03 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:04:03 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:04:03 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:04:03 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:04:03 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:04:03 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:04:03 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:04:03 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:04:03 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:04:03 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:04:03 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:04:03 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:04:03 26 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:04:03 26 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:04:03 26 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:04:03 26 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:04:03 26 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:04:03 26 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:04:03 26 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:04:03 26 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 07:04:03 26 Apr 2017 UTC 08:29:31 26 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 21175 08:29:31 26 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:32:07 26 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 21511 08:32:07 26 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:32:07 26 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:32:07 26 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:32:07 26 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:32:07 26 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170425223206 ] 08:32:07 26 Apr 2017 UTC: INFO: Base.py(1333): PID:21519 08:32:07 26 Apr 2017 UTC: INFO: Base.py(1375): Started processing 08:32:07 26 Apr 2017 UTC 08:32:07 26 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:32:09 26 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:32:09 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:32:09 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:32:09 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:645 calls_made:1 call_cycle:0 08:32:09 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:32:09 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:645 calls_made:1 call_cycle:0 08:32:09 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:32:09 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:645 calls_made:1 call_cycle:0 08:32:09 26 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:645 calls_made:1 call_cycle:0 2237.7570 -15803.0300 04/26/17 08:27:14 UTC) to sdrifter@soest.hawaii.edu 08:32:09 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:645 calls_made:1 call_cycle:0 08:32:09 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:32:09 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:645 calls_made:1 call_cycle:0 08:32:09 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:32:09 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:645 calls_made:1 call_cycle:0 08:32:09 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:32:09 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:645 calls_made:1 call_cycle:0 08:32:09 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:32:09 26 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:32:19 26 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:32:21 26 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:32:21 26 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:32:21 26 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:32:21 26 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:32:21 26 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:32:28 26 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0645lz 08:32:28 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0645lz.x00 08:32:28 26 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0645lz.r in process_file_group 08:32:28 26 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260645.log 08:32:28 26 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:32:28 26 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0645dz 08:32:28 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0645dz.x00 08:32:28 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0645dz.x01 08:32:28 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0645dz.x02 08:32:28 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0645dz.x03 08:32:28 26 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0645dz.r in process_file_group 08:32:28 26 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [645] 08:32:28 26 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [645] 08:32:28 26 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260645) for profiles 08:32:28 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:32:28 26 Apr 2017 UTC: INFO: QC.py(365): Changed (2/453) 2 3 to QC_PROBABLY_BAD because raw temperature spikes 08:32:28 26 Apr 2017 UTC: INFO: QC.py(180): Changed (2/453) 2 3 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:32:28 26 Apr 2017 UTC: INFO: QC.py(365): Changed (2/453) 2 3 to QC_INTERPOLATED because temperature spikes 08:32:28 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/453) 195:199 to QC_BAD because slow apogee CT flow 08:32:28 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/453) 1:6 to QC_BAD because prior to dive start 08:32:28 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (11/453) 1:6 195:199 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:32:28 26 Apr 2017 UTC: INFO: QC.py(180): Changed (11/453) 1:6 195:199 to QC_BAD because changed corrected salin implies changed speed 08:32:29 26 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:32:29 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.14 cm/s 08:32:29 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.64 cm/s 08:32:29 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:32:29 26 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (44/453) 172:175 177:180 182:185 187:190 192:195 197:200 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:32:29 26 Apr 2017 UTC: INFO: QC.py(180): Changed (2/453) 2 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:32:29 26 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (44/453) 172:175 177:180 182:185 187:190 192:195 197:200 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:32:29 26 Apr 2017 UTC: INFO: QC.py(180): Changed (2/453) 2 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:32:29 26 Apr 2017 UTC: INFO: QC.py(180): Changed (11/453) 1:6 195:199 to QC_BAD because changed salinity implies changed optode oxygen 08:32:29 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:32:29 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 08:32:29 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 645: Data set size for profile, binned and kkyy files reduced by 11 points, a 2.43% reduction 08:32:29 26 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.645 08:32:29 26 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:32:29 26 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:32:29 26 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:32:30 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 08:32:30 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 08:38:05 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 08:38:07 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 08:38:07 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 08:39:30 26 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:39:30 26 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:39:30 26 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:39:30 26 Apr 2017 UTC /home/sg626/p6260645.log /home/sg626/p6260645.eng /home/sg626/p6260645.asc /home/sg626/p6260645.pro /home/sg626/p6260645.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 08:39:30 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:39:30 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:39:30 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:39:30 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:39:30 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:39:30 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:39:30 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:39:30 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:39:30 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:39:30 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:39:30 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:39:30 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:39:30 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:39:30 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:39:30 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:39:30 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:39:30 26 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:39:30 26 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:39:30 26 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:39:30 26 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:39:30 26 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:39:30 26 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:39:30 26 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:39:30 26 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 08:39:30 26 Apr 2017 UTC 10:09:21 26 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 25359 10:09:21 26 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:12:25 26 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 25721 10:12:25 26 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:12:25 26 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:12:25 26 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:12:25 26 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:12:25 26 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170426001224 ] 10:12:25 26 Apr 2017 UTC: INFO: Base.py(1333): PID:25729 10:12:25 26 Apr 2017 UTC: INFO: Base.py(1375): Started processing 10:12:25 26 Apr 2017 UTC 10:12:25 26 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:12:26 26 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:12:26 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:12:26 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:12:26 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:646 calls_made:1 call_cycle:0 10:12:26 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:12:26 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:646 calls_made:1 call_cycle:0 10:12:26 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:12:26 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:646 calls_made:1 call_cycle:0 10:12:26 26 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:646 calls_made:1 call_cycle:0 2238.2250 -15803.3510 04/26/17 10:07:00 UTC) to sdrifter@soest.hawaii.edu 10:12:27 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:646 calls_made:1 call_cycle:0 10:12:27 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:12:27 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:646 calls_made:1 call_cycle:0 10:12:27 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:12:27 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:646 calls_made:1 call_cycle:0 10:12:27 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:12:27 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:646 calls_made:1 call_cycle:0 10:12:27 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:12:27 26 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:12:37 26 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:12:39 26 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:12:39 26 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:12:39 26 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:12:39 26 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:12:39 26 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:12:45 26 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0646lz 10:12:45 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0646lz.x00 10:12:45 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0646lz.x01 10:12:45 26 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0646lz.r in process_file_group 10:12:45 26 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260646.log 10:12:45 26 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:12:45 26 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0646dz 10:12:45 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0646dz.x00 10:12:45 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0646dz.x01 10:12:45 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0646dz.x02 10:12:45 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0646dz.x03 10:12:45 26 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0646dz.r in process_file_group 10:12:46 26 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [646] 10:12:46 26 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [646] 10:12:46 26 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260646) for profiles 10:12:46 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 10:12:46 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/478) 477 to QC_BAD because CT out of water 10:12:46 26 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.086m) 10:12:46 26 Apr 2017 UTC: INFO: QC.py(365): Changed (3/478) 2 3 194 to QC_PROBABLY_BAD because raw temperature spikes 10:12:46 26 Apr 2017 UTC: INFO: QC.py(377): Changed (1/478) 477 to QC_BAD because raw salinity below bound 10:12:46 26 Apr 2017 UTC: INFO: QC.py(180): Changed (3/478) 2 3 194 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 10:12:46 26 Apr 2017 UTC: INFO: QC.py(365): Changed (3/478) 2 3 194 to QC_INTERPOLATED because temperature spikes 10:12:46 26 Apr 2017 UTC: INFO: QC.py(377): Changed (1/478) 477 to QC_BAD because salinity below bound 10:12:46 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/478) 192:196 to QC_BAD because slow apogee CT flow 10:12:46 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/478) 1:6 to QC_BAD because prior to dive start 10:12:46 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/478) 476 478 to QC_BAD because end of climb 10:12:46 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/478) 1:6 192:196 476:478 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:12:46 26 Apr 2017 UTC: INFO: QC.py(180): Changed (14/478) 1:6 192:196 476:478 to QC_BAD because changed corrected salin implies changed speed 10:12:47 26 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 10:12:47 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.30 cm/s 10:12:47 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.73 cm/s 10:12:47 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:12:47 26 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (43/478) 168:170 172:175 177:180 182:185 187:190 192:195 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:12:47 26 Apr 2017 UTC: INFO: QC.py(180): Changed (2/478) 2 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 10:12:47 26 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (43/478) 168:170 172:175 177:180 182:185 187:190 192:195 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 10:12:47 26 Apr 2017 UTC: INFO: QC.py(180): Changed (2/478) 2 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 10:12:47 26 Apr 2017 UTC: INFO: QC.py(180): Changed (14/478) 1:6 192:196 476:478 to QC_BAD because changed salinity implies changed optode oxygen 10:12:47 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:12:47 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 10:12:47 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 646: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.93% reduction 10:12:47 26 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.646 10:12:47 26 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:12:47 26 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:12:47 26 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:12:48 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 10:12:48 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 10:18:20 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 10:18:22 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 10:18:22 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 10:19:45 26 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:19:45 26 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:19:45 26 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 10:19:45 26 Apr 2017 UTC /home/sg626/p6260646.log /home/sg626/p6260646.eng /home/sg626/p6260646.asc /home/sg626/p6260646.pro /home/sg626/p6260646.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 10:19:45 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:19:45 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:19:45 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:19:45 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:19:45 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:19:45 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:19:45 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:19:45 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:19:45 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:19:45 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:19:45 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:19:45 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:19:45 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:19:45 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:19:45 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:19:45 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:19:45 26 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:19:45 26 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:19:45 26 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:19:45 26 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:19:45 26 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:19:45 26 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:19:45 26 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:19:45 26 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 10:19:45 26 Apr 2017 UTC 11:43:37 26 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 29637 11:43:37 26 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 11:46:20 26 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 29722 11:46:20 26 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:46:20 26 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 11:46:20 26 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 11:46:20 26 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:46:20 26 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170426014619 ] 11:46:20 26 Apr 2017 UTC: INFO: Base.py(1333): PID:29730 11:46:21 26 Apr 2017 UTC: INFO: Base.py(1375): Started processing 11:46:21 26 Apr 2017 UTC 11:46:21 26 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 11:46:22 26 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 11:46:22 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:46:22 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:46:22 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:647 calls_made:1 call_cycle:0 11:46:22 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:46:22 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:647 calls_made:1 call_cycle:0 11:46:22 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:46:22 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:647 calls_made:1 call_cycle:0 11:46:22 26 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:647 calls_made:1 call_cycle:0 2238.6800 -15803.4170 04/26/17 11:41:21 UTC) to sdrifter@soest.hawaii.edu 11:46:22 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:647 calls_made:1 call_cycle:0 11:46:22 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:46:22 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:647 calls_made:1 call_cycle:0 11:46:22 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:46:22 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:647 calls_made:1 call_cycle:0 11:46:22 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:46:22 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:647 calls_made:1 call_cycle:0 11:46:22 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:46:22 26 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:46:33 26 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:46:35 26 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:46:35 26 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 11:46:35 26 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:46:35 26 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:46:35 26 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 11:46:41 26 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0647lz 11:46:41 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0647lz.x00 11:46:41 26 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0647lz.r in process_file_group 11:46:41 26 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260647.log 11:46:41 26 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 11:46:41 26 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0647dz 11:46:41 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0647dz.x00 11:46:41 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0647dz.x01 11:46:41 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0647dz.x02 11:46:41 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0647dz.x03 11:46:41 26 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0647dz.r in process_file_group 11:46:41 26 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [647] 11:46:41 26 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [647] 11:46:42 26 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260647) for profiles 11:46:42 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 11:46:42 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/459) 459 to QC_BAD because CT out of water 11:46:42 26 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.097m) 11:46:42 26 Apr 2017 UTC: INFO: QC.py(365): Changed (2/459) 2 185 to QC_PROBABLY_BAD because raw temperature spikes 11:46:42 26 Apr 2017 UTC: INFO: QC.py(180): Changed (2/459) 2 185 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 11:46:42 26 Apr 2017 UTC: INFO: QC.py(180): Changed (1/459) 459 to QC_BAD because changed raw cond implies changed raw salinity 11:46:42 26 Apr 2017 UTC: INFO: QC.py(365): Changed (2/459) 2 185 to QC_INTERPOLATED because temperature spikes 11:46:42 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (4/459) 183:186 to QC_BAD because slow apogee CT flow 11:46:42 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/459) 1:6 to QC_BAD because prior to dive start 11:46:42 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/459) 457 458 to QC_BAD because end of climb 11:46:42 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/459) 1:6 183:186 457:459 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 11:46:42 26 Apr 2017 UTC: INFO: QC.py(180): Changed (13/459) 1:6 183:186 457:459 to QC_BAD because changed corrected salin implies changed speed 11:46:42 26 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 11:46:42 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.83 cm/s 11:46:42 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.28 cm/s 11:46:42 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 11:46:42 26 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (41/459) 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 11:46:42 26 Apr 2017 UTC: INFO: QC.py(180): Changed (1/459) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 11:46:42 26 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (41/459) 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 11:46:42 26 Apr 2017 UTC: INFO: QC.py(180): Changed (1/459) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 11:46:42 26 Apr 2017 UTC: INFO: QC.py(180): Changed (13/459) 1:6 183:186 457:459 to QC_BAD because changed salinity implies changed optode oxygen 11:46:42 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 11:46:42 26 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 11:46:42 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 11:46:42 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 647: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.83% reduction 11:46:43 26 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.647 11:46:43 26 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:46:43 26 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:46:43 26 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:46:43 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 11:46:43 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 11:52:19 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 11:52:21 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 11:52:21 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 11:53:45 26 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:53:45 26 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:53:45 26 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:53:45 26 Apr 2017 UTC /home/sg626/p6260647.log /home/sg626/p6260647.eng /home/sg626/p6260647.asc /home/sg626/p6260647.pro /home/sg626/p6260647.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 11:53:45 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:53:45 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:53:45 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:53:45 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:53:45 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:53:45 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:53:45 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:53:45 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:53:45 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:53:45 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:53:45 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 11:53:45 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:53:45 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 11:53:45 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:53:45 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 11:53:45 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:53:45 26 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 11:53:45 26 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 11:53:45 26 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 11:53:45 26 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 11:53:45 26 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:53:45 26 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:53:45 26 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:53:45 26 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 11:53:45 26 Apr 2017 UTC 13:21:11 26 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 1584 13:21:11 26 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:23:57 26 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 1805 13:23:57 26 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:23:57 26 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:23:57 26 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:23:57 26 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:23:57 26 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170426032357 ] 13:23:57 26 Apr 2017 UTC: INFO: Base.py(1333): PID:1818 13:23:57 26 Apr 2017 UTC: INFO: Base.py(1375): Started processing 13:23:57 26 Apr 2017 UTC 13:23:57 26 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:23:59 26 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:23:59 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:23:59 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:23:59 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:648 calls_made:1 call_cycle:0 13:23:59 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:23:59 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:648 calls_made:1 call_cycle:0 13:23:59 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:23:59 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:648 calls_made:1 call_cycle:0 13:23:59 26 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:648 calls_made:1 call_cycle:0 2239.2210 -15803.2150 04/26/17 13:18:54 UTC) to sdrifter@soest.hawaii.edu 13:23:59 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:648 calls_made:1 call_cycle:0 13:23:59 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:23:59 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:648 calls_made:1 call_cycle:0 13:23:59 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:23:59 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:648 calls_made:1 call_cycle:0 13:23:59 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:23:59 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:648 calls_made:1 call_cycle:0 13:23:59 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:23:59 26 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:24:10 26 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:24:12 26 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:24:12 26 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:24:12 26 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:24:12 26 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:24:12 26 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:24:18 26 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0648lz 13:24:18 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0648lz.x00 13:24:18 26 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0648lz.r in process_file_group 13:24:18 26 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260648.log 13:24:18 26 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:24:18 26 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0648dz 13:24:18 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0648dz.x00 13:24:18 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0648dz.x01 13:24:18 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0648dz.x02 13:24:18 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0648dz.x03 13:24:18 26 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0648dz.r in process_file_group 13:24:19 26 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [648] 13:24:19 26 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [648] 13:24:19 26 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260648) for profiles 13:24:19 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:24:19 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/471) 469:471 to QC_BAD because CT out of water 13:24:19 26 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.192m) 13:24:19 26 Apr 2017 UTC: INFO: QC.py(365): Changed (3/471) 4 180 470 to QC_PROBABLY_BAD because raw temperature spikes 13:24:19 26 Apr 2017 UTC: INFO: QC.py(377): Changed (2/471) 469 470 to QC_BAD because raw salinity below bound 13:24:19 26 Apr 2017 UTC: INFO: QC.py(408): Changed (1/471) 180 to QC_PROBABLY_BAD because raw conductivity spikes 13:24:19 26 Apr 2017 UTC: INFO: QC.py(180): Changed (2/471) 4 180 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:24:19 26 Apr 2017 UTC: INFO: QC.py(180): Changed (1/471) 471 to QC_BAD because changed raw cond implies changed raw salinity 13:24:19 26 Apr 2017 UTC: INFO: QC.py(365): Changed (3/471) 4 180 470 to QC_INTERPOLATED because temperature spikes 13:24:19 26 Apr 2017 UTC: INFO: QC.py(377): Changed (2/471) 469 470 to QC_BAD because salinity below bound 13:24:19 26 Apr 2017 UTC: INFO: QC.py(408): Changed (1/471) 180 to QC_INTERPOLATED because conductivity spikes 13:24:19 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/471) 178:182 to QC_BAD because slow apogee CT flow 13:24:19 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/471) 1:6 to QC_BAD because prior to dive start 13:24:19 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/471) 468 to QC_BAD because end of climb 13:24:19 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/471) 1:6 178:182 468:471 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:24:19 26 Apr 2017 UTC: INFO: QC.py(180): Changed (15/471) 1:6 178:182 468:471 to QC_BAD because changed corrected salin implies changed speed 13:24:19 26 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:24:19 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.97 cm/s 13:24:19 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.56 cm/s 13:24:19 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:24:19 26 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (44/471) 155 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:24:19 26 Apr 2017 UTC: INFO: QC.py(180): Changed (2/471) 4 470 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:24:19 26 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (44/471) 155 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:24:19 26 Apr 2017 UTC: INFO: QC.py(180): Changed (2/471) 4 470 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:24:19 26 Apr 2017 UTC: INFO: QC.py(180): Changed (15/471) 1:6 178:182 468:471 to QC_BAD because changed salinity implies changed optode oxygen 13:24:19 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:24:19 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:24:20 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 648: Data set size for profile, binned and kkyy files reduced by 15 points, a 3.18% reduction 13:24:20 26 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.648 13:24:20 26 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:24:20 26 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:24:20 26 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:24:20 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:24:20 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:29:56 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 13:29:58 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:29:58 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:31:22 26 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:31:22 26 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:31:22 26 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:31:22 26 Apr 2017 UTC /home/sg626/p6260648.log /home/sg626/p6260648.eng /home/sg626/p6260648.asc /home/sg626/p6260648.pro /home/sg626/p6260648.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:31:22 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:31:22 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:31:22 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:31:22 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:31:22 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:31:22 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:31:22 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:31:22 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:31:22 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:31:22 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:31:22 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:31:22 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:31:22 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:31:22 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:31:22 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:31:22 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:31:22 26 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:31:22 26 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:31:22 26 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:31:22 26 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:31:22 26 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:31:22 26 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:31:22 26 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:31:22 26 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 13:31:22 26 Apr 2017 UTC 14:55:25 26 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 5753 14:55:25 26 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:58:01 26 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 5833 14:58:01 26 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:58:01 26 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 14:58:01 26 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 14:58:01 26 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:58:01 26 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170426045801 ] 14:58:01 26 Apr 2017 UTC: INFO: Base.py(1333): PID:5841 14:58:02 26 Apr 2017 UTC: INFO: Base.py(1375): Started processing 14:58:02 26 Apr 2017 UTC 14:58:02 26 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 14:58:03 26 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 14:58:03 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:58:03 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:58:03 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:649 calls_made:1 call_cycle:0 14:58:03 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 14:58:03 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:649 calls_made:1 call_cycle:0 14:58:03 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:58:03 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:649 calls_made:1 call_cycle:0 14:58:03 26 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:649 calls_made:1 call_cycle:0 2239.6330 -15802.8380 04/26/17 14:52:49 UTC) to sdrifter@soest.hawaii.edu 14:58:03 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:649 calls_made:1 call_cycle:0 14:58:03 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 14:58:03 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:649 calls_made:1 call_cycle:0 14:58:03 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:58:03 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:649 calls_made:1 call_cycle:0 14:58:03 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 14:58:03 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:649 calls_made:1 call_cycle:0 14:58:03 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:58:03 26 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:58:14 26 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:58:16 26 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:58:16 26 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 14:58:16 26 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:58:16 26 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:58:16 26 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 14:58:23 26 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0649lz 14:58:23 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0649lz.x00 14:58:23 26 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0649lz.r in process_file_group 14:58:23 26 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260649.log 14:58:23 26 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 14:58:23 26 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0649dz 14:58:23 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0649dz.x00 14:58:23 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0649dz.x01 14:58:23 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0649dz.x02 14:58:23 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0649dz.x03 14:58:23 26 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0649dz.r in process_file_group 14:58:23 26 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [649] 14:58:23 26 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [649] 14:58:23 26 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260649) for profiles 14:58:23 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 14:58:23 26 Apr 2017 UTC: INFO: QC.py(365): Changed (4/448) 3 4 169 447 to QC_PROBABLY_BAD because raw temperature spikes 14:58:23 26 Apr 2017 UTC: INFO: QC.py(180): Changed (4/448) 3 4 169 447 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:58:23 26 Apr 2017 UTC: INFO: QC.py(365): Changed (4/448) 3 4 169 447 to QC_INTERPOLATED because temperature spikes 14:58:23 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/448) 167:171 to QC_BAD because slow apogee CT flow 14:58:23 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (7/448) 1:7 to QC_BAD because prior to dive start 14:58:23 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/448) 447 448 to QC_BAD because end of climb 14:58:23 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/448) 1:7 167:171 447 448 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:58:23 26 Apr 2017 UTC: INFO: QC.py(180): Changed (14/448) 1:7 167:171 447 448 to QC_BAD because changed corrected salin implies changed speed 14:58:24 26 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:58:24 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.05 cm/s 14:58:24 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.82 cm/s 14:58:24 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:58:24 26 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (42/448) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:58:24 26 Apr 2017 UTC: INFO: QC.py(180): Changed (3/448) 3 4 447 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 14:58:24 26 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (42/448) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 14:58:24 26 Apr 2017 UTC: INFO: QC.py(180): Changed (3/448) 3 4 447 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 14:58:24 26 Apr 2017 UTC: INFO: QC.py(180): Changed (14/448) 1:7 167:171 447 448 to QC_BAD because changed salinity implies changed optode oxygen 14:58:24 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:58:24 26 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:58:24 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 14:58:24 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 649: Data set size for profile, binned and kkyy files reduced by 14 points, a 3.12% reduction 14:58:24 26 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.649 14:58:24 26 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:58:24 26 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:58:24 26 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:58:25 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 14:58:25 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 15:04:01 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 15:04:03 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 15:04:03 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 15:05:27 26 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 15:05:27 26 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 15:05:27 26 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 15:05:27 26 Apr 2017 UTC /home/sg626/p6260649.log /home/sg626/p6260649.eng /home/sg626/p6260649.asc /home/sg626/p6260649.pro /home/sg626/p6260649.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 15:05:27 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 15:05:27 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:05:27 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:05:27 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:05:27 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:05:27 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:05:27 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:05:27 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:05:27 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 15:05:27 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:05:27 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:05:27 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:05:27 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:05:27 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:05:27 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:05:27 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:05:27 26 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 15:05:27 26 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 15:05:27 26 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 15:05:27 26 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 15:05:27 26 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 15:05:27 26 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 15:05:27 26 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 15:05:27 26 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 15:05:27 26 Apr 2017 UTC 16:29:35 26 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 8858 16:29:35 26 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:32:16 26 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 9129 16:32:16 26 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:32:16 26 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:32:16 26 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:32:16 26 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:32:16 26 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170426063215 ] 16:32:16 26 Apr 2017 UTC: INFO: Base.py(1333): PID:9136 16:32:16 26 Apr 2017 UTC: INFO: Base.py(1375): Started processing 16:32:16 26 Apr 2017 UTC 16:32:16 26 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:32:18 26 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:32:18 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:32:18 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:32:18 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:650 calls_made:1 call_cycle:0 16:32:18 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:32:18 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:650 calls_made:1 call_cycle:0 16:32:18 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:32:18 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:650 calls_made:1 call_cycle:0 16:32:18 26 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:650 calls_made:1 call_cycle:0 2239.6770 -15802.4320 04/26/17 16:27:19 UTC) to sdrifter@soest.hawaii.edu 16:32:18 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:650 calls_made:1 call_cycle:0 16:32:18 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:32:18 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:650 calls_made:1 call_cycle:0 16:32:18 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:32:18 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:650 calls_made:1 call_cycle:0 16:32:18 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:32:18 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:650 calls_made:1 call_cycle:0 16:32:18 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:32:18 26 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:32:28 26 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:32:30 26 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:32:30 26 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:32:30 26 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:32:30 26 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:32:30 26 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:32:37 26 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0650lz 16:32:37 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0650lz.x00 16:32:37 26 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0650lz.r in process_file_group 16:32:37 26 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260650.log 16:32:37 26 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:32:37 26 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0650dz 16:32:37 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0650dz.x00 16:32:37 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0650dz.x01 16:32:37 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0650dz.x02 16:32:37 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0650dz.x03 16:32:37 26 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0650dz.r in process_file_group 16:32:37 26 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [650] 16:32:37 26 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [650] 16:32:37 26 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260650) for profiles 16:32:37 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:32:37 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/449) 448 449 to QC_BAD because CT out of water 16:32:37 26 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.117m) 16:32:37 26 Apr 2017 UTC: INFO: QC.py(365): Changed (3/449) 2 4 181 to QC_PROBABLY_BAD because raw temperature spikes 16:32:37 26 Apr 2017 UTC: INFO: QC.py(377): Changed (1/449) 448 to QC_BAD because raw salinity below bound 16:32:37 26 Apr 2017 UTC: INFO: QC.py(180): Changed (3/449) 2 4 181 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:32:37 26 Apr 2017 UTC: INFO: QC.py(180): Changed (1/449) 449 to QC_BAD because changed raw cond implies changed raw salinity 16:32:37 26 Apr 2017 UTC: INFO: QC.py(365): Changed (3/449) 2 4 181 to QC_INTERPOLATED because temperature spikes 16:32:37 26 Apr 2017 UTC: INFO: QC.py(377): Changed (1/449) 448 to QC_BAD because salinity below bound 16:32:37 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/449) 179:183 to QC_BAD because slow apogee CT flow 16:32:37 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/449) 1:6 to QC_BAD because prior to dive start 16:32:37 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/449) 447 to QC_BAD because end of climb 16:32:37 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/449) 1:6 179:183 447:449 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:32:37 26 Apr 2017 UTC: INFO: QC.py(180): Changed (14/449) 1:6 179:183 447:449 to QC_BAD because changed corrected salin implies changed speed 16:32:38 26 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:32:38 26 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 650 interp_salinity data_points in_between 244 253 % suspect thermal-inertia points 247 248 16:32:38 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.72 cm/s 16:32:38 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.40 cm/s 16:32:38 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:32:38 26 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (42/449) 155 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:32:38 26 Apr 2017 UTC: INFO: QC.py(180): Changed (3/449) 2 4 181 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:32:38 26 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (42/449) 155 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:32:38 26 Apr 2017 UTC: INFO: QC.py(180): Changed (3/449) 2 4 181 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:32:38 26 Apr 2017 UTC: INFO: QC.py(180): Changed (14/449) 1:6 179:183 447:449 to QC_BAD because changed salinity implies changed optode oxygen 16:32:38 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:32:38 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:32:38 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 650: Data set size for profile, binned and kkyy files reduced by 14 points, a 3.12% reduction 16:32:38 26 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.650 16:32:38 26 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:32:38 26 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:32:38 26 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:32:39 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:32:39 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 16:38:15 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 16:38:18 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 16:38:18 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 16:39:42 26 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:39:42 26 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:39:42 26 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:39:42 26 Apr 2017 UTC /home/sg626/p6260650.log /home/sg626/p6260650.eng /home/sg626/p6260650.asc /home/sg626/p6260650.pro /home/sg626/p6260650.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 16:39:42 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:39:42 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:39:42 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:39:42 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:39:42 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:39:42 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:39:42 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:39:42 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:39:42 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:39:42 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:39:42 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:39:42 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:39:42 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:39:42 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:39:42 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:39:42 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:39:42 26 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:39:42 26 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:39:42 26 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:39:42 26 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:39:42 26 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:39:42 26 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:39:42 26 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:39:42 26 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 16:39:42 26 Apr 2017 UTC 18:08:12 26 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 12194 18:08:12 26 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 18:10:49 26 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 12384 18:10:49 26 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:10:49 26 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 18:10:49 26 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 18:10:49 26 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:10:49 26 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170426081049 ] 18:10:49 26 Apr 2017 UTC: INFO: Base.py(1333): PID:12392 18:10:49 26 Apr 2017 UTC: INFO: Base.py(1375): Started processing 18:10:49 26 Apr 2017 UTC 18:10:49 26 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 18:10:51 26 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 18:10:51 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:10:51 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:10:51 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:651 calls_made:1 call_cycle:0 18:10:51 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:10:51 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:651 calls_made:1 call_cycle:0 18:10:51 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:10:51 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:651 calls_made:1 call_cycle:0 18:10:51 26 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:651 calls_made:1 call_cycle:0 2239.8730 -15802.1580 04/26/17 18:05:50 UTC) to sdrifter@soest.hawaii.edu 18:10:51 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:651 calls_made:1 call_cycle:0 18:10:51 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:10:51 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:651 calls_made:1 call_cycle:0 18:10:51 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:10:51 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:651 calls_made:1 call_cycle:0 18:10:51 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:10:51 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:651 calls_made:1 call_cycle:0 18:10:51 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:10:51 26 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:11:02 26 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:11:04 26 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:11:04 26 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 18:11:04 26 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:11:04 26 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:11:04 26 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 18:11:10 26 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0651lz 18:11:10 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0651lz.x00 18:11:10 26 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0651lz.r in process_file_group 18:11:10 26 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260651.log 18:11:10 26 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 18:11:10 26 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0651dz 18:11:10 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0651dz.x00 18:11:10 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0651dz.x01 18:11:10 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0651dz.x02 18:11:10 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0651dz.x03 18:11:10 26 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0651dz.r in process_file_group 18:11:11 26 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [651] 18:11:11 26 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [651] 18:11:11 26 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260651) for profiles 18:11:11 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 18:11:11 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/469) 469 to QC_BAD because CT out of water 18:11:11 26 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.119m) 18:11:11 26 Apr 2017 UTC: INFO: QC.py(365): Changed (4/469) 2:5 to QC_PROBABLY_BAD because raw temperature spikes 18:11:11 26 Apr 2017 UTC: INFO: QC.py(180): Changed (4/469) 2:5 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 18:11:11 26 Apr 2017 UTC: INFO: QC.py(180): Changed (1/469) 469 to QC_BAD because changed raw cond implies changed raw salinity 18:11:11 26 Apr 2017 UTC: INFO: QC.py(365): Changed (4/469) 2:5 to QC_INTERPOLATED because temperature spikes 18:11:11 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/469) 191:195 to QC_BAD because slow apogee CT flow 18:11:11 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/469) 1:6 to QC_BAD because prior to dive start 18:11:11 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (12/469) 1:6 191:195 469 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 18:11:11 26 Apr 2017 UTC: INFO: QC.py(180): Changed (12/469) 1:6 191:195 469 to QC_BAD because changed corrected salin implies changed speed 18:11:12 26 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 18:11:12 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.03 cm/s 18:11:12 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.72 cm/s 18:11:12 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 18:11:12 26 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (44/469) 168:170 172:175 177:180 182:185 187:190 192:195 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 18:11:12 26 Apr 2017 UTC: INFO: QC.py(180): Changed (4/469) 2:5 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 18:11:12 26 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (44/469) 168:170 172:175 177:180 182:185 187:190 192:195 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 18:11:12 26 Apr 2017 UTC: INFO: QC.py(180): Changed (4/469) 2:5 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 18:11:12 26 Apr 2017 UTC: INFO: QC.py(180): Changed (12/469) 1:6 191:195 469 to QC_BAD because changed salinity implies changed optode oxygen 18:11:12 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 18:11:12 26 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 18:11:12 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 18:11:12 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 651: Data set size for profile, binned and kkyy files reduced by 12 points, a 2.56% reduction 18:11:12 26 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.651 18:11:12 26 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:11:12 26 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:11:12 26 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:11:13 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 18:11:13 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 18:16:50 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 18:16:52 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 18:16:52 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 18:18:16 26 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:18:16 26 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:18:16 26 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:18:16 26 Apr 2017 UTC /home/sg626/p6260651.log /home/sg626/p6260651.eng /home/sg626/p6260651.asc /home/sg626/p6260651.pro /home/sg626/p6260651.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 18:18:16 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:18:16 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:18:16 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:18:16 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:18:16 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:18:16 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:18:16 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:18:16 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:18:16 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:18:16 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:18:16 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:18:16 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:18:16 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:18:16 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:18:16 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:18:16 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:18:16 26 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 18:18:16 26 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 18:18:16 26 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 18:18:16 26 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 18:18:16 26 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:18:16 26 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:18:16 26 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:18:16 26 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 18:18:16 26 Apr 2017 UTC 19:47:12 26 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 15313 19:47:12 26 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:49:59 26 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 15420 19:49:59 26 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:49:59 26 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:49:59 26 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:49:59 26 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:49:59 26 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170426094959 ] 19:49:59 26 Apr 2017 UTC: INFO: Base.py(1333): PID:15428 19:49:59 26 Apr 2017 UTC: INFO: Base.py(1375): Started processing 19:49:59 26 Apr 2017 UTC 19:49:59 26 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:50:01 26 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:50:01 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:50:01 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:50:01 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:652 calls_made:1 call_cycle:0 19:50:01 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:50:01 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:652 calls_made:1 call_cycle:0 19:50:01 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:50:01 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:652 calls_made:1 call_cycle:0 19:50:01 26 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:652 calls_made:1 call_cycle:0 2239.8050 -15802.3120 04/26/17 19:44:49 UTC) to sdrifter@soest.hawaii.edu 19:50:01 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:652 calls_made:1 call_cycle:0 19:50:01 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:50:01 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:652 calls_made:1 call_cycle:0 19:50:01 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:50:01 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:652 calls_made:1 call_cycle:0 19:50:01 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:50:01 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:652 calls_made:1 call_cycle:0 19:50:01 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:50:01 26 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:50:12 26 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:50:14 26 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:50:14 26 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:50:14 26 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:50:14 26 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:50:14 26 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:50:21 26 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0652lz 19:50:21 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0652lz.x00 19:50:21 26 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0652lz.r in process_file_group 19:50:21 26 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260652.log 19:50:21 26 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 19:50:21 26 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0652dz 19:50:21 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0652dz.x00 19:50:21 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0652dz.x01 19:50:21 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0652dz.x02 19:50:21 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0652dz.x03 19:50:21 26 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0652dz.r in process_file_group 19:50:21 26 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [652] 19:50:21 26 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [652] 19:50:21 26 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260652) for profiles 19:50:21 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 19:50:21 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/486) 484:486 to QC_BAD because CT out of water 19:50:21 26 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.195m) 19:50:21 26 Apr 2017 UTC: INFO: QC.py(365): Changed (2/486) 2 484 to QC_PROBABLY_BAD because raw temperature spikes 19:50:21 26 Apr 2017 UTC: INFO: QC.py(377): Changed (2/486) 484 485 to QC_BAD because raw salinity below bound 19:50:22 26 Apr 2017 UTC: INFO: QC.py(180): Changed (1/486) 2 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:50:22 26 Apr 2017 UTC: INFO: QC.py(180): Changed (1/486) 486 to QC_BAD because changed raw cond implies changed raw salinity 19:50:22 26 Apr 2017 UTC: INFO: QC.py(365): Changed (2/486) 2 484 to QC_INTERPOLATED because temperature spikes 19:50:22 26 Apr 2017 UTC: INFO: QC.py(377): Changed (2/486) 484 485 to QC_BAD because salinity below bound 19:50:22 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/486) 179:183 to QC_BAD because slow apogee CT flow 19:50:22 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/486) 1:6 to QC_BAD because prior to dive start 19:50:22 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/486) 483 to QC_BAD because end of climb 19:50:22 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/486) 1:6 179:183 483:486 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:50:22 26 Apr 2017 UTC: INFO: QC.py(180): Changed (15/486) 1:6 179:183 483:486 to QC_BAD because changed corrected salin implies changed speed 19:50:22 26 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:50:22 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.00 cm/s 19:50:22 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.50 cm/s 19:50:22 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:50:22 26 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (42/486) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:50:22 26 Apr 2017 UTC: INFO: QC.py(180): Changed (2/486) 2 484 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 19:50:22 26 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (42/486) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 19:50:22 26 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (3/486) 480 482 483 to QC_BAD because bad aa4330 oyxgen 19:50:22 26 Apr 2017 UTC: INFO: QC.py(180): Changed (2/486) 2 484 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 19:50:22 26 Apr 2017 UTC: INFO: QC.py(180): Changed (14/486) 1:6 179:183 484:486 to QC_BAD because changed salinity implies changed optode oxygen 19:50:22 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:50:22 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 19:50:22 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 652: Data set size for profile, binned and kkyy files reduced by 15 points, a 3.09% reduction 19:50:22 26 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.652 19:50:22 26 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:50:22 26 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:50:22 26 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:50:23 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 19:50:23 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 19:55:56 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 19:55:58 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 19:55:58 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 19:57:23 26 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:57:23 26 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:57:23 26 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:57:23 26 Apr 2017 UTC /home/sg626/p6260652.log /home/sg626/p6260652.eng /home/sg626/p6260652.asc /home/sg626/p6260652.pro /home/sg626/p6260652.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 19:57:23 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:57:23 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:57:23 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:57:23 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:57:23 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:57:23 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:57:23 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:57:23 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:57:23 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:57:23 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:57:23 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 19:57:23 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:57:23 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 19:57:23 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:57:23 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 19:57:23 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:57:23 26 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:57:23 26 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:57:23 26 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:57:23 26 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:57:23 26 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:57:23 26 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:57:23 26 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:57:23 26 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 19:57:23 26 Apr 2017 UTC 21:23:57 26 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 18659 21:23:57 26 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:26:45 26 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 18733 21:26:45 26 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:26:45 26 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:26:45 26 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:26:45 26 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:26:45 26 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170426112645 ] 21:26:45 26 Apr 2017 UTC: INFO: Base.py(1333): PID:18740 21:26:46 26 Apr 2017 UTC: INFO: Base.py(1375): Started processing 21:26:46 26 Apr 2017 UTC 21:26:46 26 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:26:47 26 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:26:47 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:26:47 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:26:47 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:653 calls_made:1 call_cycle:0 21:26:47 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:26:47 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:653 calls_made:1 call_cycle:0 21:26:47 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:26:47 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:653 calls_made:1 call_cycle:0 21:26:47 26 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:653 calls_made:1 call_cycle:0 2239.8400 -15802.6830 04/26/17 21:21:37 UTC) to sdrifter@soest.hawaii.edu 21:26:48 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:653 calls_made:1 call_cycle:0 21:26:48 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:26:48 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:653 calls_made:1 call_cycle:0 21:26:48 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:26:48 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:653 calls_made:1 call_cycle:0 21:26:48 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:26:48 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:653 calls_made:1 call_cycle:0 21:26:48 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:26:48 26 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:26:59 26 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:27:00 26 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:27:00 26 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:27:00 26 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:27:01 26 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:27:01 26 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:27:07 26 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0653lz 21:27:07 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0653lz.x00 21:27:07 26 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0653lz.r in process_file_group 21:27:07 26 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260653.log 21:27:07 26 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:27:07 26 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0653dz 21:27:07 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0653dz.x00 21:27:07 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0653dz.x01 21:27:07 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0653dz.x02 21:27:07 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0653dz.x03 21:27:07 26 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0653dz.r in process_file_group 21:27:08 26 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [653] 21:27:08 26 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [653] 21:27:08 26 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260653) for profiles 21:27:08 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:27:08 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/473) 473 to QC_BAD because CT out of water 21:27:08 26 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.017m) 21:27:08 26 Apr 2017 UTC: INFO: QC.py(365): Changed (1/473) 2 to QC_PROBABLY_BAD because raw temperature spikes 21:27:08 26 Apr 2017 UTC: INFO: QC.py(377): Changed (1/473) 473 to QC_BAD because raw salinity below bound 21:27:08 26 Apr 2017 UTC: INFO: QC.py(180): Changed (1/473) 2 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:27:08 26 Apr 2017 UTC: INFO: QC.py(365): Changed (1/473) 2 to QC_INTERPOLATED because temperature spikes 21:27:08 26 Apr 2017 UTC: INFO: QC.py(377): Changed (1/473) 473 to QC_BAD because salinity below bound 21:27:08 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/473) 182:186 to QC_BAD because slow apogee CT flow 21:27:08 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/473) 1:6 to QC_BAD because prior to dive start 21:27:08 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/473) 472 to QC_BAD because end of climb 21:27:08 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/473) 1:6 182:186 472 473 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:27:08 26 Apr 2017 UTC: INFO: QC.py(180): Changed (13/473) 1:6 182:186 472 473 to QC_BAD because changed corrected salin implies changed speed 21:27:08 26 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:27:08 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.17 cm/s 21:27:08 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.65 cm/s 21:27:08 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:27:08 26 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (43/473) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:27:08 26 Apr 2017 UTC: INFO: QC.py(180): Changed (1/473) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:27:08 26 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (43/473) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:27:08 26 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (3/473) 468 472 473 to QC_BAD because bad aa4330 oyxgen 21:27:08 26 Apr 2017 UTC: INFO: QC.py(180): Changed (1/473) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:27:08 26 Apr 2017 UTC: INFO: QC.py(180): Changed (11/473) 1:6 182:186 to QC_BAD because changed salinity implies changed optode oxygen 21:27:08 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:27:08 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:27:09 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 653: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.75% reduction 21:27:09 26 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.653 21:27:09 26 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:27:09 26 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:27:09 26 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:27:09 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:27:09 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 21:32:47 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 21:32:49 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 21:32:49 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 21:34:14 26 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:34:14 26 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:34:14 26 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:34:14 26 Apr 2017 UTC /home/sg626/p6260653.log /home/sg626/p6260653.eng /home/sg626/p6260653.asc /home/sg626/p6260653.pro /home/sg626/p6260653.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 21:34:14 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:34:14 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:34:14 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:34:14 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:34:14 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:34:14 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:34:14 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:34:14 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:34:14 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:34:14 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:34:14 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:34:14 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:34:14 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:34:14 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:34:14 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:34:14 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:34:14 26 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:34:14 26 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:34:14 26 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:34:14 26 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:34:14 26 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:34:14 26 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:34:14 26 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:34:14 26 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 21:34:14 26 Apr 2017 UTC 22:59:36 26 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 21608 22:59:36 26 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 23:02:14 26 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 22006 23:02:14 26 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:02:14 26 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:02:14 26 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:02:14 26 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:02:14 26 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170426130214 ] 23:02:14 26 Apr 2017 UTC: INFO: Base.py(1333): PID:22013 23:02:14 26 Apr 2017 UTC: INFO: Base.py(1375): Started processing 23:02:14 26 Apr 2017 UTC 23:02:14 26 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:02:16 26 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:02:16 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:02:16 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:02:16 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:654 calls_made:1 call_cycle:0 23:02:16 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:02:16 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:654 calls_made:1 call_cycle:0 23:02:16 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:02:16 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:654 calls_made:1 call_cycle:0 23:02:16 26 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:654 calls_made:1 call_cycle:0 2239.9730 -15803.0860 04/26/17 22:57:17 UTC) to sdrifter@soest.hawaii.edu 23:02:16 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:654 calls_made:1 call_cycle:0 23:02:16 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:02:16 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:654 calls_made:1 call_cycle:0 23:02:16 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:02:16 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:654 calls_made:1 call_cycle:0 23:02:16 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:02:16 26 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:654 calls_made:1 call_cycle:0 23:02:16 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:02:16 26 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:02:27 26 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:02:29 26 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:02:29 26 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:02:29 26 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:02:29 26 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:02:29 26 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:02:35 26 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0654lz 23:02:35 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0654lz.x00 23:02:35 26 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0654lz.r in process_file_group 23:02:35 26 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260654.log 23:02:35 26 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 23:02:35 26 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0654dz 23:02:35 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0654dz.x00 23:02:35 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0654dz.x01 23:02:35 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0654dz.x02 23:02:35 26 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0654dz.x03 23:02:35 26 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0654dz.r in process_file_group 23:02:36 26 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [654] 23:02:36 26 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [654] 23:02:36 26 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260654) for profiles 23:02:36 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 23:02:36 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/468) 467 468 to QC_BAD because CT out of water 23:02:36 26 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.102m) 23:02:36 26 Apr 2017 UTC: INFO: QC.py(365): Changed (3/468) 2 3 191 to QC_PROBABLY_BAD because raw temperature spikes 23:02:36 26 Apr 2017 UTC: INFO: QC.py(180): Changed (3/468) 2 3 191 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 23:02:36 26 Apr 2017 UTC: INFO: QC.py(180): Changed (2/468) 467 468 to QC_BAD because changed raw cond implies changed raw salinity 23:02:36 26 Apr 2017 UTC: INFO: QC.py(365): Changed (3/468) 2 3 191 to QC_INTERPOLATED because temperature spikes 23:02:36 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/468) 189:193 to QC_BAD because slow apogee CT flow 23:02:36 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/468) 1:6 to QC_BAD because prior to dive start 23:02:36 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/468) 1:6 189:193 467 468 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 23:02:36 26 Apr 2017 UTC: INFO: QC.py(180): Changed (13/468) 1:6 189:193 467 468 to QC_BAD because changed corrected salin implies changed speed 23:02:37 26 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 23:02:37 26 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 654 interp_salinity data_points in_between 277 278 % suspect thermal-inertia points 277 23:02:37 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.20 cm/s 23:02:37 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.74 cm/s 23:02:37 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 23:02:37 26 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (41/468) 167:170 172:175 177:180 182:185 187:190 192:195 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 23:02:37 26 Apr 2017 UTC: INFO: QC.py(180): Changed (3/468) 2 3 191 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 23:02:37 26 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (41/468) 167:170 172:175 177:180 182:185 187:190 192:195 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 23:02:37 26 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/468) 464 to QC_BAD because bad aa4330 oyxgen 23:02:37 26 Apr 2017 UTC: INFO: QC.py(180): Changed (3/468) 2 3 191 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 23:02:37 26 Apr 2017 UTC: INFO: QC.py(180): Changed (13/468) 1:6 189:193 467 468 to QC_BAD because changed salinity implies changed optode oxygen 23:02:37 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 23:02:37 26 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 23:02:37 26 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 23:02:37 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 654: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.78% reduction 23:02:37 26 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.654 23:02:37 26 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:02:37 26 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:02:37 26 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:02:38 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 23:02:38 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 23:08:10 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 23:08:13 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 23:08:13 26 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 23:09:37 26 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:09:37 26 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:09:37 26 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:09:37 26 Apr 2017 UTC /home/sg626/p6260654.log /home/sg626/p6260654.eng /home/sg626/p6260654.asc /home/sg626/p6260654.pro /home/sg626/p6260654.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 23:09:37 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:09:37 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:09:37 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:09:37 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:09:37 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:09:37 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:09:37 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:09:37 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:09:37 26 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:09:37 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:09:37 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:09:37 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:09:37 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:09:37 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:09:37 26 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:09:37 26 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:09:37 26 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:09:37 26 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:09:37 26 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:09:37 26 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:09:37 26 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:09:37 26 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:09:37 26 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:09:37 26 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 23:09:37 26 Apr 2017 UTC 00:37:35 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 25308 00:37:35 27 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:40:10 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 25589 00:40:10 27 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:40:10 27 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:40:10 27 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:40:10 27 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:40:10 27 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170426144009 ] 00:40:10 27 Apr 2017 UTC: INFO: Base.py(1333): PID:25605 00:40:10 27 Apr 2017 UTC: INFO: Base.py(1375): Started processing 00:40:10 27 Apr 2017 UTC 00:40:10 27 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:40:12 27 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:40:12 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:40:12 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:40:12 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:655 calls_made:3 call_cycle:0 00:40:12 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:40:12 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:655 calls_made:3 call_cycle:0 00:40:12 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:40:12 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:655 calls_made:3 call_cycle:0 00:40:12 27 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:655 calls_made:3 call_cycle:0 2240.2820 -15803.3880 04/27/17 00:30:30 UTC) to sdrifter@soest.hawaii.edu 00:40:12 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:655 calls_made:3 call_cycle:0 00:40:12 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:40:12 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:655 calls_made:3 call_cycle:0 00:40:12 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:40:12 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:655 calls_made:3 call_cycle:0 00:40:12 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:40:12 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:655 calls_made:3 call_cycle:0 00:40:12 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:40:12 27 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:40:23 27 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:40:25 27 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:40:25 27 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:40:25 27 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:40:25 27 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:40:25 27 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:40:31 27 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0655lz 00:40:31 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0655lz.x00 00:40:31 27 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0655lz.r in process_file_group 00:40:31 27 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260655.log 00:40:31 27 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 00:40:31 27 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0655dz 00:40:31 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0655dz.x00 00:40:31 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0655dz.x01 00:40:31 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0655dz.x02 00:40:31 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0655dz.x03 00:40:31 27 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0655dz.r in process_file_group 00:40:32 27 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [655] 00:40:32 27 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [655] 00:40:32 27 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260655) for profiles 00:40:32 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 00:40:32 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/439) 438 439 to QC_BAD because CT out of water 00:40:32 27 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.048m) 00:40:32 27 Apr 2017 UTC: INFO: QC.py(365): Changed (5/439) 2 4 5 179 438 to QC_PROBABLY_BAD because raw temperature spikes 00:40:32 27 Apr 2017 UTC: INFO: QC.py(408): Changed (1/439) 179 to QC_PROBABLY_BAD because raw conductivity spikes 00:40:32 27 Apr 2017 UTC: INFO: QC.py(180): Changed (5/439) 2 4 5 179 438 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:40:32 27 Apr 2017 UTC: INFO: QC.py(180): Changed (2/439) 438 439 to QC_BAD because changed raw cond implies changed raw salinity 00:40:32 27 Apr 2017 UTC: INFO: QC.py(365): Changed (5/439) 2 4 5 179 438 to QC_INTERPOLATED because temperature spikes 00:40:32 27 Apr 2017 UTC: INFO: QC.py(408): Changed (1/439) 179 to QC_INTERPOLATED because conductivity spikes 00:40:32 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/439) 177:181 to QC_BAD because slow apogee CT flow 00:40:32 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/439) 1:6 to QC_BAD because prior to dive start 00:40:32 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/439) 1:6 177:181 438 439 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:40:32 27 Apr 2017 UTC: INFO: QC.py(180): Changed (13/439) 1:6 177:181 438 439 to QC_BAD because changed corrected salin implies changed speed 00:40:32 27 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:40:32 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.38 cm/s 00:40:32 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.80 cm/s 00:40:32 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:40:32 27 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (41/439) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:40:32 27 Apr 2017 UTC: INFO: QC.py(180): Changed (4/439) 2 4 5 438 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:40:32 27 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (41/439) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 00:40:32 27 Apr 2017 UTC: INFO: QC.py(180): Changed (4/439) 2 4 5 438 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:40:32 27 Apr 2017 UTC: INFO: QC.py(180): Changed (13/439) 1:6 177:181 438 439 to QC_BAD because changed salinity implies changed optode oxygen 00:40:32 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:40:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 00:40:33 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 655: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.96% reduction 00:40:33 27 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.655 00:40:33 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:40:33 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:40:33 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:40:33 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 00:40:33 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 00:46:08 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 00:46:11 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 00:46:11 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 00:47:34 27 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:47:34 27 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:47:34 27 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:47:34 27 Apr 2017 UTC /home/sg626/p6260655.log /home/sg626/p6260655.eng /home/sg626/p6260655.asc /home/sg626/p6260655.pro /home/sg626/p6260655.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 00:47:34 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:47:34 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:47:34 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:47:34 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:47:34 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:47:34 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:47:34 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:47:34 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:47:34 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:47:34 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:47:34 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:47:34 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:47:34 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:47:34 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:47:34 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:47:34 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:47:34 27 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:47:34 27 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:47:34 27 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:47:34 27 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:47:34 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:47:34 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:47:34 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:47:34 27 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 00:47:34 27 Apr 2017 UTC 02:11:14 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 28746 02:11:14 27 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:13:51 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 28856 02:13:51 27 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:13:51 27 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:13:51 27 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:13:51 27 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:13:51 27 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170426161350 ] 02:13:51 27 Apr 2017 UTC: INFO: Base.py(1333): PID:28864 02:13:51 27 Apr 2017 UTC: INFO: Base.py(1375): Started processing 02:13:51 27 Apr 2017 UTC 02:13:51 27 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:13:53 27 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:13:53 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:13:53 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:13:53 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:656 calls_made:1 call_cycle:0 02:13:53 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:13:53 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:656 calls_made:1 call_cycle:0 02:13:53 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:13:53 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:656 calls_made:1 call_cycle:0 02:13:53 27 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:656 calls_made:1 call_cycle:0 2240.9060 -15803.5430 04/27/17 02:08:54 UTC) to sdrifter@soest.hawaii.edu 02:13:53 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:656 calls_made:1 call_cycle:0 02:13:53 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:13:53 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:656 calls_made:1 call_cycle:0 02:13:53 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:13:53 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:656 calls_made:1 call_cycle:0 02:13:53 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:13:53 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:656 calls_made:1 call_cycle:0 02:13:53 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:13:53 27 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:14:04 27 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:14:06 27 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:14:06 27 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:14:06 27 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:14:06 27 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:14:06 27 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:14:12 27 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0656lz 02:14:12 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0656lz.x00 02:14:12 27 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0656lz.r in process_file_group 02:14:12 27 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260656.log 02:14:12 27 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 02:14:12 27 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0656dz 02:14:12 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0656dz.x00 02:14:12 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0656dz.x01 02:14:12 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0656dz.x02 02:14:12 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0656dz.x03 02:14:12 27 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0656dz.r in process_file_group 02:14:13 27 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [656] 02:14:13 27 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [656] 02:14:13 27 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260656) for profiles 02:14:13 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 02:14:13 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/459) 458 to QC_BAD because CT out of water 02:14:13 27 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.213m) 02:14:13 27 Apr 2017 UTC: INFO: QC.py(365): Changed (2/459) 2 458 to QC_PROBABLY_BAD because raw temperature spikes 02:14:13 27 Apr 2017 UTC: INFO: QC.py(180): Changed (2/459) 2 458 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:14:13 27 Apr 2017 UTC: INFO: QC.py(180): Changed (1/459) 458 to QC_BAD because changed raw cond implies changed raw salinity 02:14:13 27 Apr 2017 UTC: INFO: QC.py(365): Changed (2/459) 2 458 to QC_INTERPOLATED because temperature spikes 02:14:13 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/459) 181:185 to QC_BAD because slow apogee CT flow 02:14:13 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/459) 1:6 to QC_BAD because prior to dive start 02:14:13 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/459) 457 459 to QC_BAD because end of climb 02:14:13 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/459) 1:6 181:185 457:459 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:14:13 27 Apr 2017 UTC: INFO: QC.py(180): Changed (14/459) 1:6 181:185 457:459 to QC_BAD because changed corrected salin implies changed speed 02:14:13 27 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:14:13 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.43 cm/s 02:14:13 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.47 cm/s 02:14:13 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:14:13 27 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (40/459) 160 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:14:13 27 Apr 2017 UTC: INFO: QC.py(180): Changed (2/459) 2 458 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:14:13 27 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (40/459) 160 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 02:14:13 27 Apr 2017 UTC: INFO: QC.py(180): Changed (2/459) 2 458 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:14:13 27 Apr 2017 UTC: INFO: QC.py(180): Changed (14/459) 1:6 181:185 457:459 to QC_BAD because changed salinity implies changed optode oxygen 02:14:13 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:14:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 02:14:14 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 656: Data set size for profile, binned and kkyy files reduced by 14 points, a 3.05% reduction 02:14:14 27 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.656 02:14:14 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:14:14 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:14:14 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:14:14 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 02:14:14 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 02:19:52 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 02:19:54 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 02:19:54 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 02:21:19 27 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:21:19 27 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:21:19 27 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:21:19 27 Apr 2017 UTC /home/sg626/p6260656.log /home/sg626/p6260656.eng /home/sg626/p6260656.asc /home/sg626/p6260656.pro /home/sg626/p6260656.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 02:21:19 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:21:19 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:21:19 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:21:19 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:21:19 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:21:19 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:21:19 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:21:19 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:21:19 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:21:19 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:21:19 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:21:19 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:21:19 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:21:19 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:21:19 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:21:19 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:21:19 27 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:21:19 27 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:21:19 27 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:21:19 27 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:21:19 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:21:19 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:21:19 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:21:19 27 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 02:21:19 27 Apr 2017 UTC 03:47:23 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 31835 03:47:23 27 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:50:09 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 32064 03:50:09 27 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:50:09 27 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:50:09 27 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:50:09 27 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:50:09 27 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170426175009 ] 03:50:09 27 Apr 2017 UTC: INFO: Base.py(1333): PID:32072 03:50:09 27 Apr 2017 UTC: INFO: Base.py(1375): Started processing 03:50:09 27 Apr 2017 UTC 03:50:09 27 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:50:11 27 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:50:11 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:50:11 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:50:11 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:657 calls_made:1 call_cycle:0 03:50:11 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:50:11 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:657 calls_made:1 call_cycle:0 03:50:11 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:50:11 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:657 calls_made:1 call_cycle:0 03:50:11 27 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:657 calls_made:1 call_cycle:0 2241.3290 -15803.5320 04/27/17 03:45:01 UTC) to sdrifter@soest.hawaii.edu 03:50:11 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:657 calls_made:1 call_cycle:0 03:50:11 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:50:11 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:657 calls_made:1 call_cycle:0 03:50:11 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:50:11 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:657 calls_made:1 call_cycle:0 03:50:11 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:50:11 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:657 calls_made:1 call_cycle:0 03:50:11 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:50:11 27 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:50:22 27 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:50:24 27 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:50:24 27 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:50:24 27 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:50:24 27 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:50:24 27 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:50:30 27 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0657lz 03:50:30 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0657lz.x00 03:50:30 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0657lz.x01 03:50:30 27 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0657lz.r in process_file_group 03:50:30 27 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260657.log 03:50:30 27 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 03:50:30 27 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0657dz 03:50:30 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0657dz.x00 03:50:30 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0657dz.x01 03:50:30 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0657dz.x02 03:50:30 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0657dz.x03 03:50:30 27 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0657dz.r in process_file_group 03:50:31 27 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [657] 03:50:31 27 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [657] 03:50:31 27 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260657) for profiles 03:50:31 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 03:50:31 27 Apr 2017 UTC: INFO: QC.py(365): Changed (3/462) 2:4 to QC_PROBABLY_BAD because raw temperature spikes 03:50:31 27 Apr 2017 UTC: INFO: QC.py(180): Changed (3/462) 2:4 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 03:50:31 27 Apr 2017 UTC: INFO: QC.py(365): Changed (3/462) 2:4 to QC_INTERPOLATED because temperature spikes 03:50:31 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/462) 183:187 to QC_BAD because slow apogee CT flow 03:50:31 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/462) 1:6 to QC_BAD because prior to dive start 03:50:31 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/462) 461 462 to QC_BAD because end of climb 03:50:31 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/462) 1:6 183:187 461 462 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:50:31 27 Apr 2017 UTC: INFO: QC.py(180): Changed (13/462) 1:6 183:187 461 462 to QC_BAD because changed corrected salin implies changed speed 03:50:31 27 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 03:50:32 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.59 cm/s 03:50:32 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.30 cm/s 03:50:32 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:50:32 27 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (44/462) 158:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:50:32 27 Apr 2017 UTC: INFO: QC.py(180): Changed (3/462) 2:4 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:50:32 27 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (44/462) 158:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 03:50:32 27 Apr 2017 UTC: INFO: QC.py(180): Changed (3/462) 2:4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 03:50:32 27 Apr 2017 UTC: INFO: QC.py(180): Changed (13/462) 1:6 183:187 461 462 to QC_BAD because changed salinity implies changed optode oxygen 03:50:32 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:50:32 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 03:50:32 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 657: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.81% reduction 03:50:32 27 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.657 03:50:32 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:50:32 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:50:32 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:50:32 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 03:50:32 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 03:56:10 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 03:56:12 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 03:56:12 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 03:57:36 27 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:57:36 27 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:57:36 27 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:57:36 27 Apr 2017 UTC /home/sg626/p6260657.log /home/sg626/p6260657.eng /home/sg626/p6260657.asc /home/sg626/p6260657.pro /home/sg626/p6260657.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 03:57:36 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:57:36 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:57:36 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:57:36 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:57:36 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:57:36 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:57:36 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:57:36 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:57:36 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:57:36 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:57:36 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:57:36 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:57:36 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:57:36 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:57:36 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:57:36 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:57:36 27 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:57:36 27 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:57:36 27 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:57:36 27 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:57:36 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:57:36 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:57:36 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:57:36 27 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 03:57:36 27 Apr 2017 UTC 05:27:49 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 2943 05:27:49 27 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:30:43 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 3217 05:30:43 27 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:30:43 27 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:30:43 27 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:30:43 27 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:30:43 27 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170426193042 ] 05:30:43 27 Apr 2017 UTC: INFO: Base.py(1333): PID:3225 05:30:43 27 Apr 2017 UTC: INFO: Base.py(1375): Started processing 05:30:43 27 Apr 2017 UTC 05:30:43 27 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:30:44 27 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:30:44 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:30:44 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:30:44 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:658 calls_made:1 call_cycle:0 05:30:44 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:30:44 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:658 calls_made:1 call_cycle:0 05:30:44 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:30:44 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:658 calls_made:1 call_cycle:0 05:30:44 27 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:658 calls_made:1 call_cycle:0 2241.6130 -15803.7010 04/27/17 05:25:24 UTC) to sdrifter@soest.hawaii.edu 05:30:45 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:658 calls_made:1 call_cycle:0 05:30:45 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:30:45 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:658 calls_made:1 call_cycle:0 05:30:45 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:30:45 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:658 calls_made:1 call_cycle:0 05:30:45 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:30:45 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:658 calls_made:1 call_cycle:0 05:30:45 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:30:45 27 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:30:55 27 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:30:57 27 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:30:57 27 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:30:57 27 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:30:57 27 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:30:57 27 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:31:04 27 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0658lz 05:31:04 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0658lz.x00 05:31:04 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0658lz.x01 05:31:04 27 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0658lz.r in process_file_group 05:31:04 27 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260658.log 05:31:04 27 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 05:31:04 27 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0658dz 05:31:04 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0658dz.x00 05:31:04 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0658dz.x01 05:31:04 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0658dz.x02 05:31:04 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0658dz.x03 05:31:04 27 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0658dz.r in process_file_group 05:31:04 27 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [658] 05:31:04 27 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [658] 05:31:04 27 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260658) for profiles 05:31:04 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:31:04 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/479) 477 479 to QC_BAD because CT out of water 05:31:04 27 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.089m) 05:31:04 27 Apr 2017 UTC: INFO: QC.py(408): Changed (1/479) 194 to QC_PROBABLY_BAD because raw conductivity spikes 05:31:04 27 Apr 2017 UTC: INFO: QC.py(180): Changed (1/479) 194 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 05:31:04 27 Apr 2017 UTC: INFO: QC.py(180): Changed (2/479) 477 479 to QC_BAD because changed raw cond implies changed raw salinity 05:31:04 27 Apr 2017 UTC: INFO: QC.py(408): Changed (1/479) 194 to QC_INTERPOLATED because conductivity spikes 05:31:04 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/479) 191:195 to QC_BAD because slow apogee CT flow 05:31:04 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/479) 1:6 to QC_BAD because prior to dive start 05:31:04 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/479) 478 to QC_BAD because end of climb 05:31:04 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/479) 1:6 191:195 477:479 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:31:04 27 Apr 2017 UTC: INFO: QC.py(180): Changed (14/479) 1:6 191:195 477:479 to QC_BAD because changed corrected salin implies changed speed 05:31:05 27 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:31:05 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.67 cm/s 05:31:05 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.64 cm/s 05:31:05 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:31:05 27 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (45/479) 167:170 172:175 177:180 182:185 187:190 192:195 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:31:05 27 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (45/479) 167:170 172:175 177:180 182:185 187:190 192:195 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 05:31:05 27 Apr 2017 UTC: INFO: QC.py(180): Changed (14/479) 1:6 191:195 477:479 to QC_BAD because changed salinity implies changed optode oxygen 05:31:05 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:31:05 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 05:31:05 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 658: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.92% reduction 05:31:05 27 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.658 05:31:05 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:31:05 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:31:05 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:31:06 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 05:31:06 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 05:36:42 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 05:36:44 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 05:36:44 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 05:38:09 27 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:38:09 27 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:38:09 27 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:38:09 27 Apr 2017 UTC /home/sg626/p6260658.log /home/sg626/p6260658.eng /home/sg626/p6260658.asc /home/sg626/p6260658.pro /home/sg626/p6260658.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 05:38:09 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:38:09 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:38:09 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:38:09 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:38:09 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:38:09 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:38:09 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:38:09 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:38:09 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:38:09 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:38:09 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:38:09 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:38:09 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:38:09 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:38:09 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:38:09 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:38:09 27 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:38:09 27 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:38:09 27 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:38:09 27 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:38:09 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:38:09 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:38:09 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:38:09 27 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 05:38:09 27 Apr 2017 UTC 07:04:43 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 6452 07:04:43 27 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:07:22 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 6540 07:07:22 27 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:07:22 27 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:07:22 27 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:07:22 27 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:07:22 27 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170426210721 ] 07:07:22 27 Apr 2017 UTC: INFO: Base.py(1333): PID:6547 07:07:22 27 Apr 2017 UTC: INFO: Base.py(1375): Started processing 07:07:22 27 Apr 2017 UTC 07:07:22 27 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:07:24 27 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:07:24 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:07:24 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:07:24 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:659 calls_made:1 call_cycle:0 07:07:24 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:07:24 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:659 calls_made:1 call_cycle:0 07:07:24 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:07:24 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:659 calls_made:1 call_cycle:0 07:07:24 27 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:659 calls_made:1 call_cycle:0 2241.7190 -15803.7790 04/27/17 07:02:12 UTC) to sdrifter@soest.hawaii.edu 07:07:24 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:659 calls_made:1 call_cycle:0 07:07:24 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:07:24 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:659 calls_made:1 call_cycle:0 07:07:24 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:07:24 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:659 calls_made:1 call_cycle:0 07:07:24 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:07:24 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:659 calls_made:1 call_cycle:0 07:07:24 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:07:24 27 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:07:34 27 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:07:36 27 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:07:36 27 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:07:36 27 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:07:36 27 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:07:36 27 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:07:43 27 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0659lz 07:07:43 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0659lz.x00 07:07:43 27 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0659lz.r in process_file_group 07:07:43 27 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260659.log 07:07:43 27 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 07:07:43 27 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0659dz 07:07:43 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0659dz.x00 07:07:43 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0659dz.x01 07:07:43 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0659dz.x02 07:07:43 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0659dz.x03 07:07:43 27 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0659dz.r in process_file_group 07:07:43 27 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [659] 07:07:43 27 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [659] 07:07:44 27 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260659) for profiles 07:07:44 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 07:07:44 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/470) 468 469 to QC_BAD because CT out of water 07:07:44 27 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.128m) 07:07:44 27 Apr 2017 UTC: INFO: QC.py(365): Changed (2/470) 2 469 to QC_PROBABLY_BAD because raw temperature spikes 07:07:44 27 Apr 2017 UTC: INFO: QC.py(180): Changed (2/470) 2 469 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:07:44 27 Apr 2017 UTC: INFO: QC.py(180): Changed (2/470) 468 469 to QC_BAD because changed raw cond implies changed raw salinity 07:07:44 27 Apr 2017 UTC: INFO: QC.py(365): Changed (2/470) 2 469 to QC_INTERPOLATED because temperature spikes 07:07:44 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/470) 199:203 to QC_BAD because slow apogee CT flow 07:07:44 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/470) 1:6 to QC_BAD because prior to dive start 07:07:44 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/470) 470 to QC_BAD because end of climb 07:07:44 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/470) 1:6 199:203 468:470 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:07:44 27 Apr 2017 UTC: INFO: QC.py(180): Changed (14/470) 1:6 199:203 468:470 to QC_BAD because changed corrected salin implies changed speed 07:07:44 27 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:07:44 27 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 659 interp_salinity data_points in_between 170 196 % suspect thermal-inertia points 172 173 07:07:44 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.99 cm/s 07:07:44 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.29 cm/s 07:07:44 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:07:44 27 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (42/470) 175 177:180 182:185 187:190 192:195 197:200 202:205 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:07:44 27 Apr 2017 UTC: INFO: QC.py(180): Changed (2/470) 2 469 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:07:44 27 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (42/470) 175 177:180 182:185 187:190 192:195 197:200 202:205 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 07:07:44 27 Apr 2017 UTC: INFO: QC.py(180): Changed (2/470) 2 469 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:07:44 27 Apr 2017 UTC: INFO: QC.py(180): Changed (14/470) 1:6 199:203 468:470 to QC_BAD because changed salinity implies changed optode oxygen 07:07:44 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:07:44 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 07:07:45 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 659: Data set size for profile, binned and kkyy files reduced by 14 points, a 2.98% reduction 07:07:45 27 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.659 07:07:45 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:07:45 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:07:45 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:07:45 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 07:07:45 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 07:13:23 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 07:13:25 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 07:13:25 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 07:14:50 27 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:14:50 27 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:14:50 27 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:14:50 27 Apr 2017 UTC /home/sg626/p6260659.log /home/sg626/p6260659.eng /home/sg626/p6260659.asc /home/sg626/p6260659.pro /home/sg626/p6260659.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 07:14:50 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:14:50 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:14:50 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:14:50 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:14:50 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:14:50 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:14:50 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:14:50 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:14:50 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:14:50 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:14:50 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 07:14:50 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:14:50 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 07:14:50 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:14:50 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 07:14:50 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:14:50 27 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:14:50 27 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:14:50 27 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:14:50 27 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:14:50 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:14:50 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:14:50 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:14:50 27 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 07:14:50 27 Apr 2017 UTC 08:42:01 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 9534 08:42:01 27 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:44:41 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 9650 08:44:41 27 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:44:41 27 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:44:41 27 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:44:41 27 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:44:41 27 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170426224440 ] 08:44:41 27 Apr 2017 UTC: INFO: Base.py(1333): PID:9658 08:44:41 27 Apr 2017 UTC: INFO: Base.py(1375): Started processing 08:44:41 27 Apr 2017 UTC 08:44:41 27 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:44:43 27 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:44:43 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:44:43 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:44:43 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:660 calls_made:1 call_cycle:0 08:44:43 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:44:43 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:660 calls_made:1 call_cycle:0 08:44:43 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:44:43 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:660 calls_made:1 call_cycle:0 08:44:43 27 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:660 calls_made:1 call_cycle:0 2241.6690 -15804.0290 04/27/17 08:39:26 UTC) to sdrifter@soest.hawaii.edu 08:44:43 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:660 calls_made:1 call_cycle:0 08:44:43 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:44:43 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:660 calls_made:1 call_cycle:0 08:44:43 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:44:43 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:660 calls_made:1 call_cycle:0 08:44:43 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:44:43 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:660 calls_made:1 call_cycle:0 08:44:43 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:44:43 27 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:44:54 27 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:44:56 27 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:44:56 27 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:44:56 27 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:44:56 27 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:44:56 27 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:45:03 27 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0660lz 08:45:03 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0660lz.x00 08:45:03 27 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0660lz.r in process_file_group 08:45:03 27 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260660.log 08:45:03 27 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 08:45:03 27 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0660dz 08:45:03 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0660dz.x00 08:45:03 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0660dz.x01 08:45:03 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0660dz.x02 08:45:03 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0660dz.x03 08:45:03 27 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0660dz.r in process_file_group 08:45:03 27 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [660] 08:45:03 27 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [660] 08:45:03 27 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260660) for profiles 08:45:03 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 08:45:03 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (3/457) 455:457 to QC_BAD because CT out of water 08:45:03 27 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.103m) 08:45:03 27 Apr 2017 UTC: INFO: QC.py(365): Changed (4/457) 2 3 202 456 to QC_PROBABLY_BAD because raw temperature spikes 08:45:03 27 Apr 2017 UTC: INFO: QC.py(180): Changed (4/457) 2 3 202 456 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:45:03 27 Apr 2017 UTC: INFO: QC.py(180): Changed (3/457) 455:457 to QC_BAD because changed raw cond implies changed raw salinity 08:45:03 27 Apr 2017 UTC: INFO: QC.py(365): Changed (4/457) 2 3 202 456 to QC_INTERPOLATED because temperature spikes 08:45:03 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/457) 200:204 to QC_BAD because slow apogee CT flow 08:45:03 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/457) 1:6 to QC_BAD because prior to dive start 08:45:03 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/457) 454 to QC_BAD because end of climb 08:45:03 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/457) 1:6 200:204 454:457 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:45:03 27 Apr 2017 UTC: INFO: QC.py(180): Changed (15/457) 1:6 200:204 454:457 to QC_BAD because changed corrected salin implies changed speed 08:45:04 27 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:45:04 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.55 cm/s 08:45:04 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.48 cm/s 08:45:04 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:45:04 27 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (45/457) 175 177:180 182:185 187:190 192:195 197:200 202:205 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:45:04 27 Apr 2017 UTC: INFO: QC.py(180): Changed (3/457) 2 3 456 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:45:04 27 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (45/457) 175 177:180 182:185 187:190 192:195 197:200 202:205 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 08:45:04 27 Apr 2017 UTC: INFO: QC.py(180): Changed (3/457) 2 3 456 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:45:04 27 Apr 2017 UTC: INFO: QC.py(180): Changed (15/457) 1:6 200:204 454:457 to QC_BAD because changed salinity implies changed optode oxygen 08:45:04 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:45:04 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 08:45:04 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 660: Data set size for profile, binned and kkyy files reduced by 15 points, a 3.28% reduction 08:45:04 27 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.660 08:45:04 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:45:04 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:45:04 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:45:05 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 08:45:05 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 08:50:44 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 08:50:46 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 08:50:46 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 08:52:12 27 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:52:12 27 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:52:12 27 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:52:12 27 Apr 2017 UTC /home/sg626/p6260660.log /home/sg626/p6260660.eng /home/sg626/p6260660.asc /home/sg626/p6260660.pro /home/sg626/p6260660.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 08:52:12 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:52:12 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:52:12 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:52:12 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:52:12 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:52:12 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:52:12 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:52:12 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:52:12 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:52:12 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:52:12 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 08:52:12 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:52:12 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 08:52:12 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:52:12 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 08:52:12 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:52:12 27 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:52:12 27 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:52:12 27 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:52:12 27 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:52:12 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:52:12 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:52:12 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:52:12 27 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 08:52:12 27 Apr 2017 UTC 10:24:07 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 13069 10:24:07 27 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:27:00 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 13184 10:27:00 27 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:27:00 27 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:27:00 27 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:27:00 27 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:27:00 27 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427002700 ] 10:27:00 27 Apr 2017 UTC: INFO: Base.py(1333): PID:13192 10:27:00 27 Apr 2017 UTC: INFO: Base.py(1375): Started processing 10:27:00 27 Apr 2017 UTC 10:27:00 27 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:27:02 27 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:27:02 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:27:02 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:27:02 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:661 calls_made:1 call_cycle:0 10:27:02 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:27:02 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:661 calls_made:1 call_cycle:0 10:27:02 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:27:02 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:661 calls_made:1 call_cycle:0 10:27:02 27 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:661 calls_made:1 call_cycle:0 2241.5660 -15804.4240 04/27/17 10:21:48 UTC) to sdrifter@soest.hawaii.edu 10:27:02 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:661 calls_made:1 call_cycle:0 10:27:02 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:27:02 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:661 calls_made:1 call_cycle:0 10:27:02 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:27:02 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:661 calls_made:1 call_cycle:0 10:27:02 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:27:02 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:661 calls_made:1 call_cycle:0 10:27:02 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:27:02 27 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:27:13 27 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:27:15 27 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:27:15 27 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:27:15 27 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:27:15 27 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:27:15 27 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:27:21 27 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0661lz 10:27:21 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0661lz.x00 10:27:21 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0661lz.x01 10:27:21 27 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0661lz.r in process_file_group 10:27:21 27 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260661.log 10:27:21 27 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 10:27:21 27 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0661dz 10:27:21 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0661dz.x00 10:27:21 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0661dz.x01 10:27:21 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0661dz.x02 10:27:21 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0661dz.x03 10:27:21 27 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0661dz.r in process_file_group 10:27:22 27 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [661] 10:27:22 27 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [661] 10:27:22 27 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260661) for profiles 10:27:22 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 10:27:22 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/490) 490 to QC_BAD because CT out of water 10:27:22 27 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.029m) 10:27:22 27 Apr 2017 UTC: INFO: QC.py(365): Changed (2/490) 2 197 to QC_PROBABLY_BAD because raw temperature spikes 10:27:22 27 Apr 2017 UTC: INFO: QC.py(408): Changed (1/490) 197 to QC_PROBABLY_BAD because raw conductivity spikes 10:27:22 27 Apr 2017 UTC: INFO: QC.py(180): Changed (2/490) 2 197 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 10:27:22 27 Apr 2017 UTC: INFO: QC.py(180): Changed (1/490) 490 to QC_BAD because changed raw cond implies changed raw salinity 10:27:22 27 Apr 2017 UTC: INFO: QC.py(365): Changed (2/490) 2 197 to QC_INTERPOLATED because temperature spikes 10:27:22 27 Apr 2017 UTC: INFO: QC.py(408): Changed (1/490) 197 to QC_INTERPOLATED because conductivity spikes 10:27:22 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/490) 195:199 to QC_BAD because slow apogee CT flow 10:27:22 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/490) 1:6 to QC_BAD because prior to dive start 10:27:22 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/490) 489 to QC_BAD because end of climb 10:27:22 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/490) 1:6 195:199 489 490 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:27:22 27 Apr 2017 UTC: INFO: QC.py(180): Changed (13/490) 1:6 195:199 489 490 to QC_BAD because changed corrected salin implies changed speed 10:27:23 27 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 10:27:23 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.55 cm/s 10:27:23 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.02 cm/s 10:27:23 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:27:23 27 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (42/490) 172:175 177:180 182:185 187:190 192:195 197:200 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:27:23 27 Apr 2017 UTC: INFO: QC.py(180): Changed (1/490) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 10:27:23 27 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (42/490) 172:175 177:180 182:185 187:190 192:195 197:200 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 10:27:23 27 Apr 2017 UTC: INFO: QC.py(180): Changed (1/490) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 10:27:23 27 Apr 2017 UTC: INFO: QC.py(180): Changed (13/490) 1:6 195:199 489 490 to QC_BAD because changed salinity implies changed optode oxygen 10:27:23 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:27:23 27 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:27:23 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 10:27:23 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 661: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.65% reduction 10:27:23 27 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.661 10:27:23 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:27:23 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:27:23 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:27:24 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 10:27:24 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 10:33:02 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 10:33:04 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 10:33:04 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 10:34:29 27 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:34:29 27 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:34:29 27 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 10:34:29 27 Apr 2017 UTC /home/sg626/p6260661.log /home/sg626/p6260661.eng /home/sg626/p6260661.asc /home/sg626/p6260661.pro /home/sg626/p6260661.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 10:34:29 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:34:29 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:34:29 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:34:29 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:34:29 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:34:29 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:34:29 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:34:29 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:34:29 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:34:29 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:34:29 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 10:34:29 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:34:29 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 10:34:29 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:34:29 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 10:34:29 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:34:29 27 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:34:29 27 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:34:29 27 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:34:29 27 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:34:29 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:34:29 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:34:29 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:34:29 27 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 10:34:29 27 Apr 2017 UTC 11:59:37 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 15989 11:59:37 27 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:02:19 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 16427 12:02:19 27 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:02:19 27 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:02:19 27 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:02:19 27 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:02:19 27 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427020219 ] 12:02:19 27 Apr 2017 UTC: INFO: Base.py(1333): PID:16435 12:02:19 27 Apr 2017 UTC: INFO: Base.py(1375): Started processing 12:02:19 27 Apr 2017 UTC 12:02:19 27 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:02:21 27 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:02:21 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:02:21 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:02:21 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:662 calls_made:1 call_cycle:0 12:02:21 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:02:21 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:662 calls_made:1 call_cycle:0 12:02:21 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:02:21 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:662 calls_made:1 call_cycle:0 12:02:21 27 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:662 calls_made:1 call_cycle:0 2241.5850 -15804.8900 04/27/17 11:57:16 UTC) to sdrifter@soest.hawaii.edu 12:02:21 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:662 calls_made:1 call_cycle:0 12:02:21 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:02:21 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:662 calls_made:1 call_cycle:0 12:02:21 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:02:21 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:662 calls_made:1 call_cycle:0 12:02:21 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:02:21 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:662 calls_made:1 call_cycle:0 12:02:21 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:02:21 27 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:02:32 27 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:02:34 27 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:02:34 27 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:02:34 27 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:02:34 27 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:02:34 27 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:02:41 27 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0662lz 12:02:41 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0662lz.x00 12:02:41 27 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0662lz.r in process_file_group 12:02:41 27 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260662.log 12:02:41 27 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 12:02:41 27 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0662dz 12:02:41 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0662dz.x00 12:02:41 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0662dz.x01 12:02:41 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0662dz.x02 12:02:41 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0662dz.x03 12:02:41 27 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0662dz.r in process_file_group 12:02:41 27 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [662] 12:02:41 27 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [662] 12:02:41 27 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260662) for profiles 12:02:41 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 12:02:41 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (1/466) 466 to QC_BAD because CT out of water 12:02:41 27 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.083m) 12:02:41 27 Apr 2017 UTC: INFO: QC.py(365): Changed (2/466) 4 5 to QC_PROBABLY_BAD because raw temperature spikes 12:02:41 27 Apr 2017 UTC: INFO: QC.py(180): Changed (2/466) 4 5 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 12:02:41 27 Apr 2017 UTC: INFO: QC.py(180): Changed (1/466) 466 to QC_BAD because changed raw cond implies changed raw salinity 12:02:41 27 Apr 2017 UTC: INFO: QC.py(365): Changed (2/466) 4 5 to QC_INTERPOLATED because temperature spikes 12:02:41 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/466) 183:187 to QC_BAD because slow apogee CT flow 12:02:41 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/466) 1:6 to QC_BAD because prior to dive start 12:02:41 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/466) 465 to QC_BAD because end of climb 12:02:41 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/466) 1:6 183:187 465 466 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:02:41 27 Apr 2017 UTC: INFO: QC.py(180): Changed (13/466) 1:6 183:187 465 466 to QC_BAD because changed corrected salin implies changed speed 12:02:42 27 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:02:42 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.28 cm/s 12:02:42 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.92 cm/s 12:02:42 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:02:42 27 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (40/466) 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:02:42 27 Apr 2017 UTC: INFO: QC.py(180): Changed (2/466) 4 5 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 12:02:42 27 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (40/466) 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 12:02:42 27 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/466) 389 to QC_BAD because bad aa4330 oyxgen 12:02:42 27 Apr 2017 UTC: INFO: QC.py(180): Changed (2/466) 4 5 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 12:02:42 27 Apr 2017 UTC: INFO: QC.py(180): Changed (13/466) 1:6 183:187 465 466 to QC_BAD because changed salinity implies changed optode oxygen 12:02:42 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:02:42 27 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:02:42 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 12:02:42 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 662: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.79% reduction 12:02:42 27 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.662 12:02:42 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:02:42 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:02:42 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:02:43 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 12:02:43 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 12:08:21 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 12:08:23 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 12:08:23 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 12:09:49 27 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:09:49 27 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:09:49 27 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 12:09:49 27 Apr 2017 UTC /home/sg626/p6260662.log /home/sg626/p6260662.eng /home/sg626/p6260662.asc /home/sg626/p6260662.pro /home/sg626/p6260662.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 12:09:49 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:09:49 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:09:49 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:09:49 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:09:49 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:09:49 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:09:49 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:09:49 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:09:49 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:09:49 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:09:49 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 12:09:49 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:09:49 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 12:09:49 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:09:49 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 12:09:49 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:09:49 27 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 12:09:49 27 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 12:09:49 27 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 12:09:49 27 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 12:09:49 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:09:49 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:09:49 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:09:49 27 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 12:09:49 27 Apr 2017 UTC 13:30:23 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 19302 13:30:23 27 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:33:01 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 19406 13:33:01 27 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:33:01 27 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:33:01 27 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:33:01 27 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:33:01 27 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427033301 ] 13:33:01 27 Apr 2017 UTC: INFO: Base.py(1333): PID:19414 13:33:01 27 Apr 2017 UTC: INFO: Base.py(1375): Started processing 13:33:01 27 Apr 2017 UTC 13:33:01 27 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:33:03 27 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:33:03 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:33:03 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:33:03 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:663 calls_made:1 call_cycle:0 13:33:03 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:33:03 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:663 calls_made:1 call_cycle:0 13:33:03 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:33:03 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:663 calls_made:1 call_cycle:0 13:33:03 27 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:663 calls_made:1 call_cycle:0 2241.8140 -15805.1310 04/27/17 13:28:06 UTC) to sdrifter@soest.hawaii.edu 13:33:03 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:663 calls_made:1 call_cycle:0 13:33:03 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:33:03 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:663 calls_made:1 call_cycle:0 13:33:03 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:33:03 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:663 calls_made:1 call_cycle:0 13:33:03 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:33:03 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:663 calls_made:1 call_cycle:0 13:33:03 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:33:03 27 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:33:14 27 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:33:16 27 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:33:16 27 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:33:16 27 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:33:16 27 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:33:16 27 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:33:23 27 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0663lz 13:33:23 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0663lz.x00 13:33:23 27 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0663lz.r in process_file_group 13:33:23 27 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260663.log 13:33:23 27 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 13:33:23 27 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0663dz 13:33:23 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0663dz.x00 13:33:23 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0663dz.x01 13:33:23 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0663dz.x02 13:33:23 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0663dz.x03 13:33:23 27 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0663dz.r in process_file_group 13:33:23 27 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [663] 13:33:23 27 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [663] 13:33:23 27 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260663) for profiles 13:33:23 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:33:23 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/445) 444 445 to QC_BAD because CT out of water 13:33:23 27 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.240m) 13:33:23 27 Apr 2017 UTC: INFO: QC.py(365): Changed (3/445) 2 3 188 to QC_PROBABLY_BAD because raw temperature spikes 13:33:23 27 Apr 2017 UTC: INFO: QC.py(377): Changed (1/445) 445 to QC_BAD because raw salinity below bound 13:33:23 27 Apr 2017 UTC: INFO: QC.py(180): Changed (3/445) 2 3 188 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:33:23 27 Apr 2017 UTC: INFO: QC.py(180): Changed (1/445) 444 to QC_BAD because changed raw cond implies changed raw salinity 13:33:23 27 Apr 2017 UTC: INFO: QC.py(365): Changed (3/445) 2 3 188 to QC_INTERPOLATED because temperature spikes 13:33:23 27 Apr 2017 UTC: INFO: QC.py(377): Changed (1/445) 445 to QC_BAD because salinity below bound 13:33:23 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/445) 186:190 to QC_BAD because slow apogee CT flow 13:33:23 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/445) 1:6 to QC_BAD because prior to dive start 13:33:23 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/445) 443 to QC_BAD because end of climb 13:33:23 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (14/445) 1:6 186:190 443:445 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:33:23 27 Apr 2017 UTC: INFO: QC.py(180): Changed (14/445) 1:6 186:190 443:445 to QC_BAD because changed corrected salin implies changed speed 13:33:24 27 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:33:24 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.22 cm/s 13:33:24 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.76 cm/s 13:33:24 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:33:24 27 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (39/445) 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:33:24 27 Apr 2017 UTC: INFO: QC.py(180): Changed (2/445) 2 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:33:24 27 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (39/445) 162:165 167:170 172:175 177:180 182:185 187:190 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 13:33:24 27 Apr 2017 UTC: INFO: QC.py(180): Changed (2/445) 2 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:33:24 27 Apr 2017 UTC: INFO: QC.py(180): Changed (14/445) 1:6 186:190 443:445 to QC_BAD because changed salinity implies changed optode oxygen 13:33:24 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:33:24 27 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:33:24 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 13:33:24 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 663: Data set size for profile, binned and kkyy files reduced by 14 points, a 3.15% reduction 13:33:24 27 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.663 13:33:24 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:33:24 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:33:24 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:33:25 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 13:33:25 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 13:39:06 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 13:39:08 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 13:39:08 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 13:40:35 27 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:40:35 27 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:40:35 27 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:40:35 27 Apr 2017 UTC /home/sg626/p6260663.log /home/sg626/p6260663.eng /home/sg626/p6260663.asc /home/sg626/p6260663.pro /home/sg626/p6260663.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 13:40:35 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:40:35 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:40:35 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:40:35 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:40:35 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:40:35 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:40:35 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:40:35 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:40:35 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:40:35 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:40:35 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 13:40:35 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:40:35 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 13:40:35 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:40:35 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 13:40:35 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:40:35 27 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:40:35 27 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:40:35 27 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:40:35 27 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:40:35 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:40:35 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:40:35 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:40:35 27 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 13:40:35 27 Apr 2017 UTC 15:13:23 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 22902 15:13:23 27 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 15:16:15 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 23011 15:16:15 27 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 15:16:15 27 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 15:16:15 27 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 15:16:15 27 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 15:16:15 27 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427051614 ] 15:16:15 27 Apr 2017 UTC: INFO: Base.py(1333): PID:23019 15:16:15 27 Apr 2017 UTC: INFO: Base.py(1375): Started processing 15:16:15 27 Apr 2017 UTC 15:16:15 27 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 15:16:16 27 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 15:16:16 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 15:16:16 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:16:16 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:664 calls_made:1 call_cycle:0 15:16:16 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:16:16 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:664 calls_made:1 call_cycle:0 15:16:16 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:16:16 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:664 calls_made:1 call_cycle:0 15:16:16 27 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:664 calls_made:1 call_cycle:0 2242.1480 -15805.2420 04/27/17 15:11:00 UTC) to sdrifter@soest.hawaii.edu 15:16:17 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:664 calls_made:1 call_cycle:0 15:16:17 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:16:17 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:664 calls_made:1 call_cycle:0 15:16:17 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:16:17 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:664 calls_made:1 call_cycle:0 15:16:17 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:16:17 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:664 calls_made:1 call_cycle:0 15:16:17 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:16:17 27 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 15:16:27 27 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 15:16:29 27 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 15:16:29 27 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 15:16:29 27 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 15:16:29 27 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 15:16:29 27 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 15:16:36 27 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0664lz 15:16:36 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0664lz.x00 15:16:36 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0664lz.x01 15:16:36 27 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0664lz.r in process_file_group 15:16:36 27 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260664.log 15:16:36 27 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 15:16:36 27 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0664dz 15:16:36 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0664dz.x00 15:16:36 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0664dz.x01 15:16:36 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0664dz.x02 15:16:36 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0664dz.x03 15:16:36 27 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0664dz.r in process_file_group 15:16:36 27 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [664] 15:16:36 27 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [664] 15:16:36 27 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260664) for profiles 15:16:36 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 15:16:36 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/492) 491 492 to QC_BAD because CT out of water 15:16:36 27 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.015m) 15:16:37 27 Apr 2017 UTC: INFO: QC.py(365): Changed (2/492) 3 204 to QC_PROBABLY_BAD because raw temperature spikes 15:16:37 27 Apr 2017 UTC: INFO: QC.py(408): Changed (1/492) 204 to QC_PROBABLY_BAD because raw conductivity spikes 15:16:37 27 Apr 2017 UTC: INFO: QC.py(180): Changed (2/492) 3 204 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 15:16:37 27 Apr 2017 UTC: INFO: QC.py(180): Changed (2/492) 491 492 to QC_BAD because changed raw cond implies changed raw salinity 15:16:37 27 Apr 2017 UTC: INFO: QC.py(365): Changed (2/492) 3 204 to QC_INTERPOLATED because temperature spikes 15:16:37 27 Apr 2017 UTC: INFO: QC.py(408): Changed (1/492) 204 to QC_INTERPOLATED because conductivity spikes 15:16:37 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/492) 202:206 to QC_BAD because slow apogee CT flow 15:16:37 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/492) 1:6 to QC_BAD because prior to dive start 15:16:37 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/492) 1:6 202:206 491 492 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 15:16:37 27 Apr 2017 UTC: INFO: QC.py(180): Changed (13/492) 1:6 202:206 491 492 to QC_BAD because changed corrected salin implies changed speed 15:16:37 27 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 15:16:37 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.87 cm/s 15:16:37 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.47 cm/s 15:16:37 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 15:16:37 27 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (45/492) 177:180 182:185 187:190 192:195 197:200 202:205 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 15:16:37 27 Apr 2017 UTC: INFO: QC.py(180): Changed (1/492) 3 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 15:16:37 27 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (45/492) 177:180 182:185 187:190 192:195 197:200 202:205 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 15:16:37 27 Apr 2017 UTC: INFO: QC.py(180): Changed (1/492) 3 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 15:16:37 27 Apr 2017 UTC: INFO: QC.py(180): Changed (13/492) 1:6 202:206 491 492 to QC_BAD because changed salinity implies changed optode oxygen 15:16:37 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 15:16:37 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 15:16:37 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 664: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.64% reduction 15:16:37 27 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.664 15:16:37 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 15:16:37 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 15:16:37 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 15:16:38 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 15:16:38 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 15:22:16 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 15:22:19 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 15:22:19 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 15:23:45 27 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 15:23:45 27 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 15:23:45 27 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 15:23:45 27 Apr 2017 UTC /home/sg626/p6260664.log /home/sg626/p6260664.eng /home/sg626/p6260664.asc /home/sg626/p6260664.pro /home/sg626/p6260664.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 15:23:45 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 15:23:45 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:23:45 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:23:45 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:23:45 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:23:45 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:23:45 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:23:45 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:23:45 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 15:23:45 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:23:45 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 15:23:45 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:23:45 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 15:23:45 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:23:45 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 15:23:45 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:23:45 27 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 15:23:45 27 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 15:23:45 27 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 15:23:45 27 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 15:23:45 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 15:23:45 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 15:23:45 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 15:23:45 27 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 15:23:45 27 Apr 2017 UTC 16:47:13 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 25859 16:47:13 27 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:49:23 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 25957 16:49:23 27 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:49:23 27 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:49:23 27 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:49:23 27 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:49:23 27 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427064923 ] 16:49:23 27 Apr 2017 UTC: INFO: Base.py(1333): PID:25964 16:49:23 27 Apr 2017 UTC: INFO: Base.py(1375): Started processing 16:49:23 27 Apr 2017 UTC 16:49:23 27 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:49:25 27 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:49:25 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:49:25 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:49:25 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:665 calls_made:1 call_cycle:0 16:49:25 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:49:25 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:665 calls_made:1 call_cycle:0 16:49:25 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:49:25 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:665 calls_made:1 call_cycle:0 16:49:25 27 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:665 calls_made:1 call_cycle:0 2242.3360 -15805.3100 04/27/17 16:44:47 UTC) to sdrifter@soest.hawaii.edu 16:49:25 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:665 calls_made:1 call_cycle:0 16:49:25 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:49:25 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:665 calls_made:1 call_cycle:0 16:49:25 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:49:25 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:665 calls_made:1 call_cycle:0 16:49:25 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:49:25 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:665 calls_made:1 call_cycle:0 16:49:25 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:49:25 27 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:49:36 27 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:49:38 27 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:49:38 27 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:49:38 27 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:49:38 27 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:49:38 27 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:49:45 27 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0665lz 16:49:45 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0665lz.x00 16:49:45 27 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0665lz.r in process_file_group 16:49:45 27 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260665.log 16:49:45 27 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:49:45 27 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0665dz 16:49:45 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0665dz.x00 16:49:45 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0665dz.x01 16:49:45 27 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0665dz.r in process_file_group 16:49:45 27 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0665dz.r - expected 0x3567547959, generated 0xb716b463 16:49:45 27 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0665dz.r - expected 0x3842b455, generated 0x4f0d 16:49:45 27 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0665dz.r - skipping 16:49:45 27 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0665dz - skipping 16:49:45 27 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 16:49:45 27 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [665] 16:49:45 27 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 16:49:45 27 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.665 16:49:45 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:49:45 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:49:45 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:49:45 27 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:49:45 27 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:49:45 27 Apr 2017 UTC: ERROR: Base.py(1960): Dive [665] failed to process completely. The following files were not processed completely: /home/sg626/sg0665dz.r Glider logout not seen - retransmissions from glider possible Consult baselog_170427064923 for details. 16:49:45 27 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:49:45 27 Apr 2017 UTC /home/sg626/p6260665.log 16:49:45 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:49:45 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:49:45 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:49:45 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:49:45 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:49:45 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:49:45 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:49:45 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:49:45 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:49:45 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:49:45 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:49:45 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:49:45 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:49:45 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:49:45 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:49:46 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:49:46 27 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:49:46 27 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:49:46 27 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:49:46 27 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:49:46 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:49:46 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:49:46 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:49:46 27 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 16:49:46 27 Apr 2017 UTC 16:52:07 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 26381 16:52:07 27 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:54:04 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 26484 16:54:04 27 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:54:04 27 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:54:04 27 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:54:04 27 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:54:04 27 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427065403 ] 16:54:04 27 Apr 2017 UTC: INFO: Base.py(1333): PID:26491 16:54:04 27 Apr 2017 UTC: INFO: Base.py(1375): Started processing 16:54:04 27 Apr 2017 UTC 16:54:04 27 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:54:06 27 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:54:06 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:54:06 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:54:06 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:665 calls_made:2 call_cycle:0 16:54:06 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 16:54:06 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:665 calls_made:2 call_cycle:0 16:54:06 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:54:06 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:665 calls_made:2 call_cycle:0 16:54:06 27 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:665 calls_made:2 call_cycle:0 2242.3360 -15805.3100 04/27/17 16:44:47 UTC) to sdrifter@soest.hawaii.edu 16:54:06 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:665 calls_made:2 call_cycle:0 16:54:06 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 16:54:06 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:665 calls_made:2 call_cycle:0 16:54:06 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:54:06 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:665 calls_made:2 call_cycle:0 16:54:06 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 16:54:06 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:665 calls_made:2 call_cycle:0 16:54:06 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:54:06 27 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:54:17 27 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:54:19 27 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:54:19 27 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:54:19 27 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:54:19 27 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:54:19 27 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:54:26 27 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 16:54:26 27 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0665dz 16:54:26 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0665dz.x00 16:54:26 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0665dz.x01 16:54:26 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0665dz.x02 16:54:26 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0665dz.x03 16:54:26 27 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0665dz.r in process_file_group 16:54:26 27 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [665] 16:54:26 27 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [665] 16:54:26 27 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260665) for profiles 16:54:26 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 16:54:26 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/461) 460 461 to QC_BAD because CT out of water 16:54:26 27 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.182m) 16:54:26 27 Apr 2017 UTC: INFO: QC.py(365): Changed (3/461) 2 5 194 to QC_PROBABLY_BAD because raw temperature spikes 16:54:26 27 Apr 2017 UTC: INFO: QC.py(377): Changed (1/461) 460 to QC_BAD because raw salinity below bound 16:54:26 27 Apr 2017 UTC: INFO: QC.py(180): Changed (3/461) 2 5 194 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:54:26 27 Apr 2017 UTC: INFO: QC.py(180): Changed (1/461) 461 to QC_BAD because changed raw cond implies changed raw salinity 16:54:26 27 Apr 2017 UTC: INFO: QC.py(365): Changed (3/461) 2 5 194 to QC_INTERPOLATED because temperature spikes 16:54:26 27 Apr 2017 UTC: INFO: QC.py(377): Changed (1/461) 460 to QC_BAD because salinity below bound 16:54:26 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (4/461) 193:196 to QC_BAD because slow apogee CT flow 16:54:26 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/461) 1:6 to QC_BAD because prior to dive start 16:54:26 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/461) 459 to QC_BAD because end of climb 16:54:26 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/461) 1:6 193:196 459:461 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:54:26 27 Apr 2017 UTC: INFO: QC.py(180): Changed (13/461) 1:6 193:196 459:461 to QC_BAD because changed corrected salin implies changed speed 16:54:27 27 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:54:27 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.96 cm/s 16:54:27 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.84 cm/s 16:54:27 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:54:27 27 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (39/461) 169 170 172:175 177:180 182:185 187:190 192:195 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:54:27 27 Apr 2017 UTC: INFO: QC.py(180): Changed (2/461) 2 5 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:54:27 27 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (39/461) 169 170 172:175 177:180 182:185 187:190 192:195 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 16:54:27 27 Apr 2017 UTC: INFO: QC.py(180): Changed (2/461) 2 5 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:54:27 27 Apr 2017 UTC: INFO: QC.py(180): Changed (13/461) 1:6 193:196 459:461 to QC_BAD because changed salinity implies changed optode oxygen 16:54:27 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:54:27 27 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:54:27 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 16:54:28 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 665: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.82% reduction 16:54:28 27 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.665 16:54:28 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:54:28 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:54:28 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:54:28 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 16:54:28 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 17:00:10 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 17:00:12 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 17:00:12 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 17:01:39 27 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:01:39 27 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:01:39 27 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:01:39 27 Apr 2017 UTC /home/sg626/p6260665.eng /home/sg626/p6260665.asc /home/sg626/p6260665.pro /home/sg626/p6260665.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 17:01:39 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:01:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:01:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:01:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:01:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:01:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:01:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:01:39 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:01:39 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:01:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:01:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 17:01:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:01:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 17:01:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:01:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 17:01:39 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:01:39 27 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:01:39 27 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:01:39 27 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:01:39 27 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:01:39 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:01:39 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:01:39 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:01:39 27 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 17:01:39 27 Apr 2017 UTC 18:32:39 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 29762 18:32:39 27 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 18:35:08 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 29873 18:35:08 27 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:35:08 27 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 18:35:08 27 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 18:35:08 27 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:35:08 27 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427083507 ] 18:35:08 27 Apr 2017 UTC: INFO: Base.py(1333): PID:29881 18:35:08 27 Apr 2017 UTC: INFO: Base.py(1375): Started processing 18:35:08 27 Apr 2017 UTC 18:35:08 27 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 18:35:10 27 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 18:35:10 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:35:10 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:35:10 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:666 calls_made:1 call_cycle:0 18:35:10 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:35:10 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:666 calls_made:1 call_cycle:0 18:35:10 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:35:10 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:666 calls_made:1 call_cycle:0 18:35:10 27 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:666 calls_made:1 call_cycle:0 2242.5290 -15805.5090 04/27/17 18:30:17 UTC) to sdrifter@soest.hawaii.edu 18:35:10 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:666 calls_made:1 call_cycle:0 18:35:10 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:35:10 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:666 calls_made:1 call_cycle:0 18:35:10 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:35:10 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:666 calls_made:1 call_cycle:0 18:35:10 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:35:10 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:666 calls_made:1 call_cycle:0 18:35:10 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:35:10 27 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:35:21 27 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:35:23 27 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:35:23 27 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 18:35:23 27 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:35:23 27 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:35:23 27 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 18:35:30 27 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0666lz 18:35:30 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0666lz.x00 18:35:30 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0666lz.x01 18:35:30 27 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0666lz.r in process_file_group 18:35:30 27 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260666.log 18:35:30 27 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 18:35:30 27 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0666dz 18:35:30 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0666dz.x00 18:35:30 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0666dz.x01 18:35:30 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0666dz.x02 18:35:30 27 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0666dz.r in process_file_group 18:35:30 27 Apr 2017 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0666dz.r - expected 0x1870038895, generated 0x4879757d 18:35:30 27 Apr 2017 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0666dz.r - expected 0xb969b907, generated 0x9df2 18:35:30 27 Apr 2017 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0666dz.r - skipping 18:35:30 27 Apr 2017 UTC: ERROR: Base.py(272): Could not process sg0666dz - skipping 18:35:30 27 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 18:35:30 27 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [666] 18:35:30 27 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 18:35:30 27 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.666 18:35:30 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:35:30 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:35:30 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:35:30 27 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:35:30 27 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:35:30 27 Apr 2017 UTC: ERROR: Base.py(1960): Dive [666] failed to process completely. The following files were not processed completely: /home/sg626/sg0666dz.r Glider logout not seen - retransmissions from glider possible Consult baselog_170427083507 for details. 18:35:30 27 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:35:30 27 Apr 2017 UTC /home/sg626/p6260666.log 18:35:30 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:35:30 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:35:30 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:35:30 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:35:30 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:35:30 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:35:30 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:35:30 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:35:30 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:35:30 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:35:30 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:35:30 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:35:30 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:35:30 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:35:30 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:35:30 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:35:30 27 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 18:35:30 27 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 18:35:30 27 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 18:35:30 27 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 18:35:30 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:35:30 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:35:30 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:35:30 27 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 18:35:30 27 Apr 2017 UTC 18:37:27 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 30131 18:37:27 27 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 18:39:05 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 30229 18:39:05 27 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:39:05 27 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 18:39:05 27 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 18:39:05 27 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:39:05 27 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427083904 ] 18:39:05 27 Apr 2017 UTC: INFO: Base.py(1333): PID:30237 18:39:05 27 Apr 2017 UTC: INFO: Base.py(1375): Started processing 18:39:05 27 Apr 2017 UTC 18:39:05 27 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 18:39:07 27 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 18:39:07 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:39:07 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:39:07 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:666 calls_made:2 call_cycle:0 18:39:07 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:39:07 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:666 calls_made:2 call_cycle:0 18:39:07 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:39:07 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:666 calls_made:2 call_cycle:0 18:39:07 27 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:666 calls_made:2 call_cycle:0 2242.5290 -15805.5090 04/27/17 18:30:17 UTC) to sdrifter@soest.hawaii.edu 18:39:07 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:666 calls_made:2 call_cycle:0 18:39:07 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:39:07 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:666 calls_made:2 call_cycle:0 18:39:07 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:39:07 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:666 calls_made:2 call_cycle:0 18:39:07 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:39:07 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:666 calls_made:2 call_cycle:0 18:39:07 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:39:07 27 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:39:18 27 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:39:20 27 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:39:20 27 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 18:39:20 27 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:39:20 27 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:39:20 27 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 18:39:27 27 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 18:39:27 27 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0666dz 18:39:27 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0666dz.x00 18:39:27 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0666dz.x01 18:39:27 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0666dz.x02 18:39:27 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0666dz.x03 18:39:27 27 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0666dz.r in process_file_group 18:39:27 27 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [666] 18:39:27 27 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [666] 18:39:27 27 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260666) for profiles 18:39:27 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 18:39:27 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/490) 489 490 to QC_BAD because CT out of water 18:39:27 27 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.103m) 18:39:27 27 Apr 2017 UTC: INFO: QC.py(365): Changed (2/490) 204 489 to QC_PROBABLY_BAD because raw temperature spikes 18:39:27 27 Apr 2017 UTC: INFO: QC.py(377): Changed (1/490) 489 to QC_BAD because raw salinity below bound 18:39:27 27 Apr 2017 UTC: INFO: QC.py(180): Changed (1/490) 204 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 18:39:27 27 Apr 2017 UTC: INFO: QC.py(180): Changed (1/490) 490 to QC_BAD because changed raw cond implies changed raw salinity 18:39:27 27 Apr 2017 UTC: INFO: QC.py(365): Changed (2/490) 204 489 to QC_INTERPOLATED because temperature spikes 18:39:27 27 Apr 2017 UTC: INFO: QC.py(377): Changed (1/490) 489 to QC_BAD because salinity below bound 18:39:27 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/490) 202:206 to QC_BAD because slow apogee CT flow 18:39:27 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/490) 1:6 to QC_BAD because prior to dive start 18:39:27 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/490) 1:6 202:206 489 490 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 18:39:27 27 Apr 2017 UTC: INFO: QC.py(180): Changed (13/490) 1:6 202:206 489 490 to QC_BAD because changed corrected salin implies changed speed 18:39:28 27 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 18:39:28 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.37 cm/s 18:39:28 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.37 cm/s 18:39:28 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 18:39:28 27 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (45/490) 179 180 182:185 187:190 192:195 197:200 202:205 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 18:39:28 27 Apr 2017 UTC: INFO: QC.py(180): Changed (1/490) 489 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 18:39:28 27 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (45/490) 179 180 182:185 187:190 192:195 197:200 202:205 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 18:39:28 27 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (1/490) 490 to QC_BAD because bad aa4330 oyxgen 18:39:28 27 Apr 2017 UTC: INFO: QC.py(180): Changed (1/490) 489 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 18:39:28 27 Apr 2017 UTC: INFO: QC.py(180): Changed (12/490) 1:6 202:206 489 to QC_BAD because changed salinity implies changed optode oxygen 18:39:28 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 18:39:28 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 18:39:28 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 666: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.65% reduction 18:39:28 27 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.666 18:39:28 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:39:28 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:39:28 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:39:29 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 18:39:29 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 18:45:09 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 18:45:11 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 18:45:11 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 18:46:39 27 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:46:39 27 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:46:39 27 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:46:39 27 Apr 2017 UTC /home/sg626/p6260666.eng /home/sg626/p6260666.asc /home/sg626/p6260666.pro /home/sg626/p6260666.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 18:46:39 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:46:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:46:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:46:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:46:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:46:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:46:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:46:39 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:46:39 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:46:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:46:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 18:46:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:46:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 18:46:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:46:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 18:46:39 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:46:39 27 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 18:46:39 27 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 18:46:39 27 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 18:46:39 27 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 18:46:39 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:46:39 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:46:39 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:46:39 27 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 18:46:39 27 Apr 2017 UTC 20:17:13 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 1036 20:17:13 27 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:19:50 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 1157 20:19:50 27 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:19:50 27 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 20:19:50 27 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 20:19:50 27 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:19:50 27 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427101950 ] 20:19:50 27 Apr 2017 UTC: INFO: Base.py(1333): PID:1165 20:19:50 27 Apr 2017 UTC: INFO: Base.py(1375): Started processing 20:19:50 27 Apr 2017 UTC 20:19:50 27 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 20:19:52 27 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 20:19:52 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:19:52 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:19:52 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:667 calls_made:1 call_cycle:0 20:19:52 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:19:52 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:667 calls_made:1 call_cycle:0 20:19:52 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:19:52 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:667 calls_made:1 call_cycle:0 20:19:52 27 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:667 calls_made:1 call_cycle:0 2242.5570 -15805.8240 04/27/17 20:14:55 UTC) to sdrifter@soest.hawaii.edu 20:19:52 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:667 calls_made:1 call_cycle:0 20:19:52 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:19:52 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:667 calls_made:1 call_cycle:0 20:19:52 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:19:52 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:667 calls_made:1 call_cycle:0 20:19:52 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:19:52 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:667 calls_made:1 call_cycle:0 20:19:52 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:19:52 27 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:20:03 27 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:20:05 27 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:20:05 27 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 20:20:05 27 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:20:05 27 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:20:05 27 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 20:20:12 27 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0667lz 20:20:12 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0667lz.x00 20:20:12 27 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0667lz.r in process_file_group 20:20:12 27 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260667.log 20:20:12 27 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 20:20:12 27 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0667dz 20:20:12 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0667dz.x00 20:20:12 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0667dz.x01 20:20:12 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0667dz.x02 20:20:12 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0667dz.x03 20:20:12 27 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0667dz.r in process_file_group 20:20:12 27 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [667] 20:20:12 27 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [667] 20:20:12 27 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260667) for profiles 20:20:12 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 20:20:12 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/486) 484 485 to QC_BAD because CT out of water 20:20:12 27 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.224m) 20:20:12 27 Apr 2017 UTC: INFO: QC.py(365): Changed (2/486) 2 485 to QC_PROBABLY_BAD because raw temperature spikes 20:20:12 27 Apr 2017 UTC: INFO: QC.py(377): Changed (1/486) 485 to QC_BAD because raw salinity below bound 20:20:12 27 Apr 2017 UTC: INFO: QC.py(180): Changed (1/486) 2 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 20:20:12 27 Apr 2017 UTC: INFO: QC.py(180): Changed (1/486) 484 to QC_BAD because changed raw cond implies changed raw salinity 20:20:12 27 Apr 2017 UTC: INFO: QC.py(365): Changed (2/486) 2 485 to QC_INTERPOLATED because temperature spikes 20:20:12 27 Apr 2017 UTC: INFO: QC.py(377): Changed (1/486) 485 to QC_BAD because salinity below bound 20:20:12 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/486) 198:202 to QC_BAD because slow apogee CT flow 20:20:13 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/486) 1:6 to QC_BAD because prior to dive start 20:20:13 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/486) 483 486 to QC_BAD because end of climb 20:20:13 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (15/486) 1:6 198:202 483:486 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 20:20:13 27 Apr 2017 UTC: INFO: QC.py(180): Changed (15/486) 1:6 198:202 483:486 to QC_BAD because changed corrected salin implies changed speed 20:20:13 27 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 20:20:13 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.50 cm/s 20:20:13 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.54 cm/s 20:20:13 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 20:20:13 27 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (45/486) 175 177:180 182:185 187:190 192:195 197:200 202:205 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 20:20:13 27 Apr 2017 UTC: INFO: QC.py(180): Changed (2/486) 2 485 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 20:20:13 27 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (45/486) 175 177:180 182:185 187:190 192:195 197:200 202:205 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 20:20:13 27 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (2/486) 484 485 to QC_BAD because bad aa4330 oyxgen 20:20:13 27 Apr 2017 UTC: INFO: QC.py(180): Changed (1/486) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 20:20:13 27 Apr 2017 UTC: INFO: QC.py(180): Changed (13/486) 1:6 198:202 483 486 to QC_BAD because changed salinity implies changed optode oxygen 20:20:13 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 20:20:13 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 20:20:13 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 667: Data set size for profile, binned and kkyy files reduced by 15 points, a 3.09% reduction 20:20:13 27 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.667 20:20:13 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:20:13 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:20:13 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:20:14 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 20:20:14 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 20:25:55 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 143, max_depth_dive_num = 275 20:25:57 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from info in ./p6260001.nc 20:25:57 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg626_sg626_Mission1_ALOHA:__timeseries.nc from files found in: ./ 20:27:25 27 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:27:25 27 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:27:25 27 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:27:25 27 Apr 2017 UTC /home/sg626/p6260667.log /home/sg626/p6260667.eng /home/sg626/p6260667.asc /home/sg626/p6260667.pro /home/sg626/p6260667.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc /home/sg626/sg626_sg626_Mission1_ALOHA:__timeseries.nc 20:27:25 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:27:25 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:27:25 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:27:25 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:27:25 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:27:25 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:27:25 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:27:25 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:27:25 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:27:25 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:27:25 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 20:27:25 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 20:27:25 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 20:27:25 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 20:27:25 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 20:27:25 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 20:27:25 27 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 20:27:25 27 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 20:27:25 27 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 20:27:25 27 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 20:27:25 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:27:25 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:27:25 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:27:25 27 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 20:27:25 27 Apr 2017 UTC 21:49:22 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 4178 21:49:22 27 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:52:03 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 4433 21:52:03 27 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:52:03 27 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:52:03 27 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:52:03 27 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:52:03 27 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427115202 ] 21:52:03 27 Apr 2017 UTC: INFO: Base.py(1333): PID:4440 21:52:03 27 Apr 2017 UTC: INFO: Base.py(1375): Started processing 21:52:03 27 Apr 2017 UTC 21:52:03 27 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:52:05 27 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:52:05 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:52:05 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:52:05 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:0 21:52:05 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:52:05 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:0 21:52:05 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:52:05 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:0 21:52:05 27 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:1 call_cycle:0 2242.4090 -15806.1060 04/27/17 21:47:01 UTC) to sdrifter@soest.hawaii.edu 21:52:05 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:0 21:52:05 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:52:05 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:0 21:52:05 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:52:05 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:0 21:52:05 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:52:05 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:0 21:52:05 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:52:05 27 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:52:16 27 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:52:18 27 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:52:18 27 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:52:18 27 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:52:18 27 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:52:18 27 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:52:25 27 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0668lz 21:52:25 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0668lz.x00 21:52:25 27 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0668lz.r in process_file_group 21:52:25 27 Apr 2017 UTC: INFO: Base.py(585): Removing secrets from ./p6260668.log 21:52:25 27 Apr 2017 UTC: INFO: Base.py(265): fragment_size = 4096 21:52:25 27 Apr 2017 UTC: INFO: Base.py(368): Processing ./sg0668dz 21:52:25 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0668dz.x00 21:52:25 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0668dz.x01 21:52:25 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0668dz.x02 21:52:25 27 Apr 2017 UTC: INFO: Base.py(687): Checking fragment ./sg0668dz.x03 21:52:25 27 Apr 2017 UTC: INFO: Base.py(472): Processing ./sg0668dz.r in process_file_group 21:52:25 27 Apr 2017 UTC: INFO: Base.py(1622): Processed dive(s) [668] 21:52:25 27 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [668] 21:52:25 27 Apr 2017 UTC: INFO: Base.py(1719): Processing (./p6260668) for profiles 21:52:25 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 21:52:25 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(2937): Changed (2/453) 452 453 to QC_BAD because CT out of water 21:52:25 27 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(2950): CTD out of the water after climb (0.025m) 21:52:25 27 Apr 2017 UTC: INFO: QC.py(365): Changed (3/453) 200 201 452 to QC_PROBABLY_BAD because raw temperature spikes 21:52:25 27 Apr 2017 UTC: INFO: QC.py(180): Changed (3/453) 200 201 452 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:52:25 27 Apr 2017 UTC: INFO: QC.py(180): Changed (2/453) 452 453 to QC_BAD because changed raw cond implies changed raw salinity 21:52:25 27 Apr 2017 UTC: INFO: QC.py(365): Changed (3/453) 200 201 452 to QC_INTERPOLATED because temperature spikes 21:52:25 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/453) 198:202 to QC_BAD because slow apogee CT flow 21:52:25 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3250): Changed (6/453) 1:6 to QC_BAD because prior to dive start 21:52:25 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3350): Changed (13/453) 1:6 198:202 452 453 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:52:25 27 Apr 2017 UTC: INFO: QC.py(180): Changed (13/453) 1:6 198:202 452 453 to QC_BAD because changed corrected salin implies changed speed 21:52:26 27 Apr 2017 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:52:26 27 Apr 2017 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 668 interp_salinity data_points in_between 160 167 % suspect thermal-inertia points 164 21:52:26 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.29 cm/s 21:52:26 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.83 cm/s 21:52:26 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:52:26 27 Apr 2017 UTC: INFO: sbe43_ext.py(236): Changed (40/453) 174 175 177:180 182:185 187:190 192:195 197:200 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:52:26 27 Apr 2017 UTC: INFO: QC.py(180): Changed (2/453) 201 452 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:52:26 27 Apr 2017 UTC: INFO: aa4330_ext.py(316): Changed (40/453) 174 175 177:180 182:185 187:190 192:195 197:200 ... to QC_UNSAMPLED because unsampled aa4330 oyxgen 21:52:26 27 Apr 2017 UTC: INFO: aa4330_ext.py(320): Changed (3/453) 447 449 452 to QC_BAD because bad aa4330 oyxgen 21:52:26 27 Apr 2017 UTC: INFO: QC.py(180): Changed (1/453) 201 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:52:26 27 Apr 2017 UTC: INFO: QC.py(180): Changed (12/453) 1:6 198:202 453 to QC_BAD because changed salinity implies changed optode oxygen 21:52:26 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:52:26 27 Apr 2017 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:52:26 27 Apr 2017 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' 21:52:26 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4151): Dive 668: Data set size for profile, binned and kkyy files reduced by 13 points, a 2.87% reduction 21:52:26 27 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668 21:52:26 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:52:26 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:52:26 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:52:27 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from info in ./p6260001.nc 21:52:27 27 Apr 2017 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg626_sg626_Mission1_ALOHA:__5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:57: RuntimeWarning: invalid value encountered in double_scalars ret = ret / float(rcount) 21:54:48 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 4633 21:54:48 27 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:55:44 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 4732 21:55:44 27 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:55:44 27 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 21:55:44 27 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 21:55:44 27 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:55:44 27 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427115544 ] 21:55:44 27 Apr 2017 UTC: INFO: Base.py(1333): PID:4740 21:55:44 27 Apr 2017 UTC: INFO: Base.py(1375): Started processing 21:55:44 27 Apr 2017 UTC 21:55:44 27 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 21:55:46 27 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 21:55:46 27 Apr 2017 UTC: WARNING: Base.py(1414): Previous conversion process (pid:4440) still exists - signalling process to complete 21:55:46 27 Apr 2017 UTC: WARNING: Base.py(1147): Caught SIGUSR1 - bailing out of further processing 21:55:46 27 Apr 2017 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:55:46 27 Apr 2017 UTC /home/sg626/p6260668.log /home/sg626/p6260668.eng /home/sg626/p6260668.asc /home/sg626/p6260668.pro /home/sg626/p6260668.nc 21:55:46 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:55:46 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:55:46 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:55:46 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:55:46 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:55:46 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:55:46 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:55:46 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:55:46 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:55:46 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:55:46 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:55:46 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:55:46 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:55:46 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:55:46 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:55:46 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:55:46 27 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:55:46 27 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:55:46 27 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:55:46 27 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:55:46 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:55:46 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:55:46 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:55:46 27 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 21:55:46 27 Apr 2017 UTC 21:55:47 27 Apr 2017 UTC: INFO: Base.py(1425): Previous conversion process (pid:4440) apparently recieved the signal - proceeding 21:55:47 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:55:47 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:55:47 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:1 21:55:47 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:1 2242.4370 -15806.1980 04/27/17 21:53:23 UTC QUIT_COMMAND) to 8082269543@txt.att.net 21:55:47 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:55:47 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:1 21:55:47 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:1 2242.4370 -15806.1980 04/27/17 21:53:23 UTC QUIT_COMMAND) to 8087808045@vtext.com 21:55:47 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:55:47 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:1 21:55:47 27 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:1 call_cycle:1 2242.4370 -15806.1980 04/27/17 21:53:23 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:55:47 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:1 21:55:47 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:1 2242.4370 -15806.1980 04/27/17 21:53:23 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:55:48 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:55:48 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:1 21:55:48 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:1 2242.4370 -15806.1980 04/27/17 21:53:23 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 21:55:48 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:55:48 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:1 21:55:48 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:1 2242.4370 -15806.1980 04/27/17 21:53:23 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 21:55:48 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:55:48 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:1 21:55:48 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:1 2242.4370 -15806.1980 04/27/17 21:53:23 UTC QUIT_COMMAND) to hramm@hawaii.edu 21:55:48 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:55:48 27 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:55:59 27 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:56:01 27 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:56:01 27 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 21:56:01 27 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:56:01 27 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:56:01 27 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 21:56:07 27 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 21:56:07 27 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 21:56:07 27 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 21:56:07 27 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.1 21:56:07 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:56:07 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:56:07 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:56:08 27 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:56:08 27 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:56:08 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:56:08 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:56:08 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:56:08 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:56:08 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:56:08 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:56:08 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:56:08 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:56:08 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:56:08 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:56:08 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 21:56:08 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 21:56:08 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 21:56:08 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 21:56:08 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 21:56:08 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 21:56:08 27 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 21:56:08 27 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 21:56:08 27 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 21:56:08 27 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 21:56:08 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:56:08 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:56:08 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:56:08 27 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 21:56:08 27 Apr 2017 UTC 22:00:33 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 5267 22:00:33 27 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:01:30 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 5526 22:01:30 27 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:01:30 27 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:01:30 27 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:01:30 27 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:01:30 27 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427120130 ] 22:01:30 27 Apr 2017 UTC: INFO: Base.py(1333): PID:5534 22:01:30 27 Apr 2017 UTC: INFO: Base.py(1375): Started processing 22:01:30 27 Apr 2017 UTC 22:01:30 27 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:01:32 27 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:01:32 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:01:32 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:01:32 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:2 22:01:32 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:2 2242.4660 -15806.2830 04/27/17 21:59:10 UTC QUIT_COMMAND) to 8082269543@txt.att.net 22:01:32 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:01:32 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:2 22:01:32 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:2 2242.4660 -15806.2830 04/27/17 21:59:10 UTC QUIT_COMMAND) to 8087808045@vtext.com 22:01:32 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:01:32 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:2 22:01:32 27 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:1 call_cycle:2 2242.4660 -15806.2830 04/27/17 21:59:10 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:01:32 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:2 22:01:32 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:2 2242.4660 -15806.2830 04/27/17 21:59:10 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:01:32 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:01:32 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:2 22:01:32 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:2 2242.4660 -15806.2830 04/27/17 21:59:10 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 22:01:33 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:01:33 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:2 22:01:33 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:2 2242.4660 -15806.2830 04/27/17 21:59:10 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 22:01:33 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:01:33 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:2 22:01:33 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:2 2242.4660 -15806.2830 04/27/17 21:59:10 UTC QUIT_COMMAND) to hramm@hawaii.edu 22:01:33 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:01:33 27 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:01:44 27 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:01:46 27 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:01:46 27 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:01:46 27 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:01:46 27 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:01:46 27 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:01:52 27 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 22:01:52 27 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 22:01:52 27 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 22:01:52 27 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.2 22:01:52 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:01:52 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:01:52 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:01:53 27 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:01:53 27 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:01:53 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:01:53 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:01:53 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:01:53 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:01:53 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:01:53 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:01:53 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:01:53 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:01:53 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:01:53 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:01:53 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:01:53 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:01:53 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:01:53 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:01:53 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:01:53 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:01:53 27 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:01:53 27 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:01:53 27 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:01:53 27 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:01:53 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:01:53 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:01:53 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:01:53 27 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 22:01:53 27 Apr 2017 UTC 22:06:17 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 5822 22:06:17 27 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:07:16 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 5910 22:07:16 27 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:07:16 27 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:07:16 27 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:07:16 27 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:07:16 27 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427120716 ] 22:07:16 27 Apr 2017 UTC: INFO: Base.py(1333): PID:5918 22:07:16 27 Apr 2017 UTC: INFO: Base.py(1375): Started processing 22:07:16 27 Apr 2017 UTC 22:07:16 27 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:07:18 27 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:07:18 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:07:18 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:07:18 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:3 22:07:18 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:3 2242.5010 -15806.3700 04/27/17 22:04:56 UTC QUIT_COMMAND) to 8082269543@txt.att.net 22:07:18 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:07:18 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:3 22:07:18 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:3 2242.5010 -15806.3700 04/27/17 22:04:56 UTC QUIT_COMMAND) to 8087808045@vtext.com 22:07:18 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:07:18 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:3 22:07:18 27 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:1 call_cycle:3 2242.5010 -15806.3700 04/27/17 22:04:56 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:07:18 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:3 22:07:18 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:3 2242.5010 -15806.3700 04/27/17 22:04:56 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:07:18 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:07:18 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:3 22:07:18 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:3 2242.5010 -15806.3700 04/27/17 22:04:56 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 22:07:18 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:07:18 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:3 22:07:18 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:3 2242.5010 -15806.3700 04/27/17 22:04:56 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 22:07:18 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:07:18 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:3 22:07:18 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:3 2242.5010 -15806.3700 04/27/17 22:04:56 UTC QUIT_COMMAND) to hramm@hawaii.edu 22:07:18 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:07:18 27 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:07:29 27 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:07:31 27 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:07:31 27 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:07:31 27 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:07:31 27 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:07:31 27 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:07:38 27 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 22:07:38 27 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 22:07:38 27 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 22:07:38 27 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.3 22:07:38 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:07:38 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:07:38 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:07:39 27 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:07:39 27 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:07:39 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:07:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:07:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:07:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:07:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:07:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:07:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:07:39 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:07:39 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:07:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:07:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:07:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:07:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:07:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:07:39 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:07:39 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:07:39 27 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:07:39 27 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:07:39 27 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:07:39 27 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:07:39 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:07:39 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:07:39 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:07:39 27 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 22:07:39 27 Apr 2017 UTC 22:12:07 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 6358 22:12:07 27 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:13:03 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 6449 22:13:03 27 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:13:03 27 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:13:03 27 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:13:03 27 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:13:03 27 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427121302 ] 22:13:03 27 Apr 2017 UTC: INFO: Base.py(1333): PID:6456 22:13:03 27 Apr 2017 UTC: INFO: Base.py(1375): Started processing 22:13:03 27 Apr 2017 UTC 22:13:03 27 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:13:05 27 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:13:05 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:13:05 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:13:05 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:4 22:13:05 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:4 2242.5440 -15806.4790 04/27/17 22:10:41 UTC QUIT_COMMAND) to 8082269543@txt.att.net 22:13:05 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:13:05 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:4 22:13:05 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:4 2242.5440 -15806.4790 04/27/17 22:10:41 UTC QUIT_COMMAND) to 8087808045@vtext.com 22:13:05 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:13:05 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:4 22:13:05 27 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:1 call_cycle:4 2242.5440 -15806.4790 04/27/17 22:10:41 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:13:05 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:4 22:13:05 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:4 2242.5440 -15806.4790 04/27/17 22:10:41 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:13:05 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:13:05 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:4 22:13:05 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:4 2242.5440 -15806.4790 04/27/17 22:10:41 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 22:13:05 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:13:05 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:4 22:13:05 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:4 2242.5440 -15806.4790 04/27/17 22:10:41 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 22:13:05 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:13:05 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:4 22:13:05 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:4 2242.5440 -15806.4790 04/27/17 22:10:41 UTC QUIT_COMMAND) to hramm@hawaii.edu 22:13:05 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:13:05 27 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:13:16 27 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:13:18 27 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:13:18 27 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:13:18 27 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:13:18 27 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:13:18 27 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:13:25 27 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 22:13:25 27 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 22:13:25 27 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 22:13:25 27 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.4 22:13:25 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:13:25 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:13:25 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:13:25 27 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:13:25 27 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:13:25 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:13:25 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:13:25 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:13:25 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:13:25 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:13:25 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:13:25 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:13:25 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:13:25 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:13:25 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:13:25 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:13:25 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:13:25 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:13:25 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:13:25 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:13:25 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:13:25 27 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:13:25 27 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:13:25 27 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:13:25 27 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:13:25 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:13:25 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:13:25 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:13:25 27 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 22:13:25 27 Apr 2017 UTC 22:17:54 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 6754 22:17:54 27 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:18:51 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 6841 22:18:51 27 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:18:51 27 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:18:51 27 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:18:51 27 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:18:51 27 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427121851 ] 22:18:51 27 Apr 2017 UTC: INFO: Base.py(1333): PID:6848 22:18:51 27 Apr 2017 UTC: INFO: Base.py(1375): Started processing 22:18:51 27 Apr 2017 UTC 22:18:51 27 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:18:53 27 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:18:53 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:18:53 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:18:53 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:5 22:18:53 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:5 2242.5730 -15806.5730 04/27/17 22:16:29 UTC QUIT_COMMAND) to 8082269543@txt.att.net 22:18:53 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:18:53 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:5 22:18:53 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:5 2242.5730 -15806.5730 04/27/17 22:16:29 UTC QUIT_COMMAND) to 8087808045@vtext.com 22:18:53 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:18:53 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:5 22:18:53 27 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:1 call_cycle:5 2242.5730 -15806.5730 04/27/17 22:16:29 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:18:53 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:5 22:18:53 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:5 2242.5730 -15806.5730 04/27/17 22:16:29 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:18:53 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:18:53 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:5 22:18:53 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:5 2242.5730 -15806.5730 04/27/17 22:16:29 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 22:18:53 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:18:53 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:5 22:18:53 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:5 2242.5730 -15806.5730 04/27/17 22:16:29 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 22:18:53 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:18:53 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:5 22:18:53 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:5 2242.5730 -15806.5730 04/27/17 22:16:29 UTC QUIT_COMMAND) to hramm@hawaii.edu 22:18:54 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:18:54 27 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:19:04 27 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:19:06 27 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:19:06 27 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:19:06 27 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:19:06 27 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:19:06 27 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:19:13 27 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 22:19:13 27 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 22:19:13 27 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 22:19:13 27 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.5 22:19:13 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:19:13 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:19:13 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:19:14 27 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:19:14 27 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:19:14 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:19:14 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:19:14 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:19:14 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:19:14 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:19:14 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:19:14 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:19:14 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:19:14 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:19:14 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:19:14 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:19:14 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:19:14 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:19:14 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:19:14 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:19:14 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:19:14 27 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:19:14 27 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:19:14 27 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:19:14 27 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:19:14 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:19:14 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:19:14 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:19:14 27 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 22:19:14 27 Apr 2017 UTC 22:24:03 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 7222 22:24:03 27 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:25:09 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 7322 22:25:09 27 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:25:09 27 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:25:09 27 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:25:09 27 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:25:09 27 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427122508 ] 22:25:09 27 Apr 2017 UTC: INFO: Base.py(1333): PID:7329 22:25:09 27 Apr 2017 UTC: INFO: Base.py(1375): Started processing 22:25:09 27 Apr 2017 UTC 22:25:09 27 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:25:11 27 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:25:11 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:25:11 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:25:11 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:6 22:25:11 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:6 2242.4860 -15806.7120 04/27/17 22:22:25 UTC QUIT_COMMAND) to 8082269543@txt.att.net 22:25:11 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:25:11 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:6 22:25:11 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:6 2242.4860 -15806.7120 04/27/17 22:22:25 UTC QUIT_COMMAND) to 8087808045@vtext.com 22:25:11 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:25:11 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:6 22:25:11 27 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:1 call_cycle:6 2242.4860 -15806.7120 04/27/17 22:22:25 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:25:11 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:6 22:25:11 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:6 2242.4860 -15806.7120 04/27/17 22:22:25 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:25:11 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:25:11 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:6 22:25:11 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:6 2242.4860 -15806.7120 04/27/17 22:22:25 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 22:25:11 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:25:11 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:6 22:25:11 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:6 2242.4860 -15806.7120 04/27/17 22:22:25 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 22:25:11 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:25:11 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:6 22:25:11 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:6 2242.4860 -15806.7120 04/27/17 22:22:25 UTC QUIT_COMMAND) to hramm@hawaii.edu 22:25:11 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:25:11 27 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:25:22 27 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:25:24 27 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:25:24 27 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:25:24 27 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:25:25 27 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:25:25 27 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:25:31 27 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 22:25:31 27 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 22:25:31 27 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 22:25:31 27 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.6 22:25:31 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:25:31 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:25:31 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:25:32 27 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:25:32 27 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:25:32 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:25:32 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:25:32 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:25:32 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:25:32 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:25:32 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:25:32 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:25:32 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:25:32 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:25:32 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:25:32 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:25:32 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:25:32 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:25:32 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:25:32 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:25:32 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:25:32 27 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:25:32 27 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:25:32 27 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:25:32 27 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:25:32 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:25:32 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:25:32 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:25:32 27 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 22:25:32 27 Apr 2017 UTC 22:34:11 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 7871 22:34:11 27 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:35:08 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 7957 22:35:08 27 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:35:08 27 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:35:08 27 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:35:08 27 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:35:08 27 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427123507 ] 22:35:08 27 Apr 2017 UTC: INFO: Base.py(1333): PID:7964 22:35:08 27 Apr 2017 UTC: INFO: Base.py(1375): Started processing 22:35:08 27 Apr 2017 UTC 22:35:08 27 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:35:10 27 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:35:10 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:35:10 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:35:10 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:7 22:35:10 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:7 2242.4290 -15806.7910 04/27/17 22:28:43 UTC QUIT_COMMAND) to 8082269543@txt.att.net 22:35:10 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:35:10 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:7 22:35:10 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:7 2242.4290 -15806.7910 04/27/17 22:28:43 UTC QUIT_COMMAND) to 8087808045@vtext.com 22:35:10 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:35:10 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:7 22:35:10 27 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:3 call_cycle:7 2242.4290 -15806.7910 04/27/17 22:28:43 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:35:10 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:7 22:35:10 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:7 2242.4290 -15806.7910 04/27/17 22:28:43 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:35:10 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:35:10 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:7 22:35:10 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:7 2242.4290 -15806.7910 04/27/17 22:28:43 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 22:35:10 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:35:10 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:7 22:35:10 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:7 2242.4290 -15806.7910 04/27/17 22:28:43 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 22:35:10 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:35:10 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:7 22:35:10 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:7 2242.4290 -15806.7910 04/27/17 22:28:43 UTC QUIT_COMMAND) to hramm@hawaii.edu 22:35:10 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:35:10 27 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:35:21 27 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:35:23 27 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:35:23 27 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:35:23 27 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:35:23 27 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:35:23 27 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:35:30 27 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 22:35:30 27 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 22:35:30 27 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 22:35:30 27 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.7 22:35:30 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:35:30 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:35:30 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:35:31 27 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:35:31 27 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:35:31 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:35:31 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:35:31 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:35:31 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:35:31 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:35:31 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:35:31 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:35:31 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:35:31 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:35:31 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:35:31 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:35:31 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:35:31 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:35:31 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:35:31 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:35:31 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:35:31 27 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:35:31 27 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:35:31 27 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:35:31 27 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:35:31 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:35:31 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:35:31 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:35:31 27 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 22:35:31 27 Apr 2017 UTC 22:47:09 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 8436 22:47:09 27 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:48:08 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 8523 22:48:08 27 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:48:08 27 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:48:08 27 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:48:08 27 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:48:08 27 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427124808 ] 22:48:08 27 Apr 2017 UTC: INFO: Base.py(1333): PID:8531 22:48:08 27 Apr 2017 UTC: INFO: Base.py(1375): Started processing 22:48:08 27 Apr 2017 UTC 22:48:08 27 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:48:10 27 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:48:10 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:48:10 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:48:10 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:5 call_cycle:8 22:48:10 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:5 call_cycle:8 2242.3500 -15806.9360 04/27/17 22:38:39 UTC QUIT_COMMAND) to 8082269543@txt.att.net 22:48:20 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:48:20 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:5 call_cycle:8 22:48:20 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:5 call_cycle:8 2242.3500 -15806.9360 04/27/17 22:38:39 UTC QUIT_COMMAND) to 8087808045@vtext.com 22:48:20 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:48:20 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:5 call_cycle:8 22:48:20 27 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:5 call_cycle:8 2242.3500 -15806.9360 04/27/17 22:38:39 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:48:20 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:5 call_cycle:8 22:48:20 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:5 call_cycle:8 2242.3500 -15806.9360 04/27/17 22:38:39 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:48:20 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:48:20 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:5 call_cycle:8 22:48:20 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:5 call_cycle:8 2242.3500 -15806.9360 04/27/17 22:38:39 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 22:48:21 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:48:21 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:5 call_cycle:8 22:48:21 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:5 call_cycle:8 2242.3500 -15806.9360 04/27/17 22:38:39 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 22:48:21 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:48:21 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:5 call_cycle:8 22:48:21 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:5 call_cycle:8 2242.3500 -15806.9360 04/27/17 22:38:39 UTC QUIT_COMMAND) to hramm@hawaii.edu 22:48:21 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:48:21 27 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:48:32 27 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:48:34 27 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:48:34 27 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:48:34 27 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:48:34 27 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:48:34 27 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:48:40 27 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 22:48:40 27 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 22:48:40 27 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 22:48:40 27 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.8 22:48:40 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:48:40 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:48:40 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:48:41 27 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:48:41 27 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:48:41 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:48:41 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:48:41 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:48:41 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:48:41 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:48:41 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:48:41 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:48:41 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:48:41 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:48:41 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:48:41 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:48:41 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:48:41 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:48:41 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:48:41 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:48:41 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:48:41 27 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:48:41 27 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:48:41 27 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:48:41 27 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:48:41 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:48:41 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:48:41 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:48:41 27 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 22:48:41 27 Apr 2017 UTC 22:55:45 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 9015 22:55:45 27 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:56:58 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 9108 22:56:58 27 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:56:58 27 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 22:56:58 27 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 22:56:58 27 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:56:58 27 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427125657 ] 22:56:58 27 Apr 2017 UTC: INFO: Base.py(1333): PID:9116 22:56:58 27 Apr 2017 UTC: INFO: Base.py(1375): Started processing 22:56:58 27 Apr 2017 UTC 22:56:58 27 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 22:57:00 27 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 22:57:00 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:57:00 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:57:00 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:2 call_cycle:9 22:57:00 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:2 call_cycle:9 2242.7330 -15805.4930 04/27/17 22:52:00 UTC QUIT_COMMAND) to 8082269543@txt.att.net 22:57:00 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:57:00 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:2 call_cycle:9 22:57:00 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:2 call_cycle:9 2242.7330 -15805.4930 04/27/17 22:52:00 UTC QUIT_COMMAND) to 8087808045@vtext.com 22:57:00 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:57:00 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:2 call_cycle:9 22:57:00 27 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:2 call_cycle:9 2242.7330 -15805.4930 04/27/17 22:52:00 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:57:00 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:2 call_cycle:9 22:57:00 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:2 call_cycle:9 2242.7330 -15805.4930 04/27/17 22:52:00 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 22:57:00 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:57:00 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:2 call_cycle:9 22:57:00 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:2 call_cycle:9 2242.7330 -15805.4930 04/27/17 22:52:00 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 22:57:00 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:57:00 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:2 call_cycle:9 22:57:00 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:2 call_cycle:9 2242.7330 -15805.4930 04/27/17 22:52:00 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 22:57:00 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:57:00 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:2 call_cycle:9 22:57:00 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:2 call_cycle:9 2242.7330 -15805.4930 04/27/17 22:52:00 UTC QUIT_COMMAND) to hramm@hawaii.edu 22:57:00 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:57:00 27 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:57:11 27 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:57:13 27 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:57:13 27 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 22:57:13 27 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:57:13 27 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:57:13 27 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 22:57:20 27 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 22:57:20 27 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 22:57:20 27 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 22:57:20 27 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.9 22:57:20 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:57:20 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:57:20 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:57:20 27 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:57:20 27 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:57:20 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:57:20 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:57:20 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:57:20 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:57:20 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:57:20 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:57:20 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:57:20 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:57:20 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:57:20 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:57:20 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 22:57:20 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 22:57:20 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 22:57:20 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 22:57:20 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 22:57:20 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 22:57:20 27 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 22:57:20 27 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 22:57:20 27 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 22:57:20 27 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 22:57:20 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:57:20 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:57:20 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:57:20 27 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 22:57:20 27 Apr 2017 UTC 23:14:31 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 10115 23:14:31 27 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 23:15:33 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 10141 23:15:33 27 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:15:33 27 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:15:33 27 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:15:33 27 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:15:33 27 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427131532 ] 23:15:33 27 Apr 2017 UTC: INFO: Base.py(1333): PID:10149 23:15:33 27 Apr 2017 UTC: INFO: Base.py(1375): Started processing 23:15:33 27 Apr 2017 UTC 23:15:33 27 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:15:35 27 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:15:35 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:15:35 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:15:35 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:10 23:15:35 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:10 2244.2180 -15802.8180 04/27/17 23:12:52 UTC QUIT_COMMAND) to 8082269543@txt.att.net 23:15:35 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:15:35 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:10 23:15:35 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:10 2244.2180 -15802.8180 04/27/17 23:12:52 UTC QUIT_COMMAND) to 8087808045@vtext.com 23:15:35 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:15:35 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:10 23:15:35 27 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:1 call_cycle:10 2244.2180 -15802.8180 04/27/17 23:12:52 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 23:15:35 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:10 23:15:35 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:10 2244.2180 -15802.8180 04/27/17 23:12:52 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 23:15:35 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:15:35 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:10 23:15:35 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:10 2244.2180 -15802.8180 04/27/17 23:12:52 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 23:15:35 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:15:35 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:10 23:15:35 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:10 2244.2180 -15802.8180 04/27/17 23:12:52 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 23:15:35 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:15:35 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:10 23:15:35 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:10 2244.2180 -15802.8180 04/27/17 23:12:52 UTC QUIT_COMMAND) to hramm@hawaii.edu 23:15:35 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:15:35 27 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:15:46 27 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:15:48 27 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:15:48 27 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:15:48 27 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:15:48 27 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:15:48 27 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:15:55 27 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 23:15:55 27 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 23:15:55 27 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 23:15:55 27 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.10 23:15:55 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:15:55 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:15:55 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:15:55 27 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:15:55 27 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:15:55 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:15:55 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:15:55 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:15:55 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:15:55 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:15:55 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:15:55 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:15:55 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:15:55 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:15:55 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:15:55 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:15:55 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:15:55 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:15:55 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:15:55 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:15:55 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:15:55 27 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:15:55 27 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:15:55 27 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:15:55 27 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:15:55 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:15:55 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:15:55 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:15:55 27 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 23:15:55 27 Apr 2017 UTC 23:47:48 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 11260 23:47:48 27 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 23:48:45 27 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 11331 23:48:45 27 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:48:45 27 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 23:48:45 27 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 23:48:45 27 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:48:45 27 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427134844 ] 23:48:45 27 Apr 2017 UTC: INFO: Base.py(1333): PID:11346 23:48:45 27 Apr 2017 UTC: INFO: Base.py(1375): Started processing 23:48:45 27 Apr 2017 UTC 23:48:45 27 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 23:48:47 27 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 23:48:47 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:48:47 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:48:47 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:11 23:48:47 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:11 2246.1360 -15759.3630 04/27/17 23:46:28 UTC QUIT_COMMAND) to 8082269543@txt.att.net 23:48:47 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:48:47 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:11 23:48:47 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:11 2246.1360 -15759.3630 04/27/17 23:46:28 UTC QUIT_COMMAND) to 8087808045@vtext.com 23:48:47 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:48:47 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:11 23:48:47 27 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:1 call_cycle:11 2246.1360 -15759.3630 04/27/17 23:46:28 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 23:48:47 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:11 23:48:47 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:11 2246.1360 -15759.3630 04/27/17 23:46:28 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 23:48:47 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:48:47 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:11 23:48:47 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:11 2246.1360 -15759.3630 04/27/17 23:46:28 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 23:48:47 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:48:47 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:11 23:48:47 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:11 2246.1360 -15759.3630 04/27/17 23:46:28 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 23:48:47 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:48:47 27 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:11 23:48:47 27 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:11 2246.1360 -15759.3630 04/27/17 23:46:28 UTC QUIT_COMMAND) to hramm@hawaii.edu 23:48:47 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:48:47 27 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:48:58 27 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:49:00 27 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:49:00 27 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 23:49:00 27 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:49:00 27 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:49:00 27 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 23:49:07 27 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 23:49:07 27 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 23:49:07 27 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 23:49:07 27 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.11 23:49:07 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:49:07 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:49:07 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:49:08 27 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:49:08 27 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:49:08 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:49:08 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:49:08 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:49:08 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:49:08 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:49:08 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:49:08 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:49:08 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:49:08 27 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:49:08 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:49:08 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 23:49:08 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 23:49:08 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 23:49:08 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 23:49:08 27 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 23:49:08 27 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 23:49:08 27 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 23:49:08 27 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 23:49:08 27 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 23:49:08 27 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 23:49:08 27 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:49:08 27 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:49:08 27 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:49:08 27 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 23:49:08 27 Apr 2017 UTC 00:27:16 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 12847 00:27:16 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:28:56 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 12945 00:28:56 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:28:56 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 00:28:56 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 00:28:56 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:28:56 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427142855 ] 00:28:56 28 Apr 2017 UTC: INFO: Base.py(1333): PID:12953 00:28:56 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 00:28:56 28 Apr 2017 UTC 00:28:56 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 00:28:58 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 00:28:58 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:28:58 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:28:58 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:4 call_cycle:12 00:28:58 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:4 call_cycle:12 2248.2760 -15756.5860 04/28/17 00:19:31 UTC QUIT_COMMAND) to 8082269543@txt.att.net 00:28:58 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:28:58 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:4 call_cycle:12 00:28:58 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:4 call_cycle:12 2248.2760 -15756.5860 04/28/17 00:19:31 UTC QUIT_COMMAND) to 8087808045@vtext.com 00:28:58 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:28:58 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:4 call_cycle:12 00:28:58 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:4 call_cycle:12 2248.2760 -15756.5860 04/28/17 00:19:31 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 00:28:58 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:4 call_cycle:12 00:28:58 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:4 call_cycle:12 2248.2760 -15756.5860 04/28/17 00:19:31 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 00:28:58 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:28:58 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:4 call_cycle:12 00:28:58 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:4 call_cycle:12 2248.2760 -15756.5860 04/28/17 00:19:31 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 00:28:58 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:28:58 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:4 call_cycle:12 00:28:58 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:4 call_cycle:12 2248.2760 -15756.5860 04/28/17 00:19:31 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 00:28:58 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:28:58 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:4 call_cycle:12 00:28:58 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:4 call_cycle:12 2248.2760 -15756.5860 04/28/17 00:19:31 UTC QUIT_COMMAND) to hramm@hawaii.edu 00:28:58 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:28:58 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:29:10 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:29:12 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:29:12 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 00:29:12 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:29:12 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:29:12 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 00:29:18 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 00:29:18 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 00:29:18 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 00:29:18 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.12 00:29:18 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:29:18 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:29:18 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:29:19 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:29:19 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:29:19 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:29:19 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:29:19 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:29:19 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:29:19 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:29:19 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:29:19 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:29:19 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:29:19 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:29:19 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:29:19 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 00:29:19 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 00:29:19 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 00:29:19 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 00:29:19 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 00:29:19 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 00:29:19 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 00:29:19 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 00:29:19 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 00:29:19 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 00:29:19 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:29:19 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:29:19 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:29:19 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 00:29:19 28 Apr 2017 UTC 01:00:21 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 14218 01:00:21 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:01:17 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 14450 01:01:17 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:01:17 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:01:17 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:01:17 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:01:17 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427150116 ] 01:01:17 28 Apr 2017 UTC: INFO: Base.py(1333): PID:14458 01:01:17 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 01:01:17 28 Apr 2017 UTC 01:01:17 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:01:19 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:01:19 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:01:19 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:01:19 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:13 01:01:19 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:13 2248.9230 -15756.2960 04/28/17 00:58:54 UTC QUIT_COMMAND) to 8082269543@txt.att.net 01:01:19 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:01:19 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:13 01:01:19 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:13 2248.9230 -15756.2960 04/28/17 00:58:54 UTC QUIT_COMMAND) to 8087808045@vtext.com 01:01:19 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:01:19 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:13 01:01:19 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:1 call_cycle:13 2248.9230 -15756.2960 04/28/17 00:58:54 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 01:01:19 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:13 01:01:19 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:13 2248.9230 -15756.2960 04/28/17 00:58:54 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 01:01:19 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:01:19 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:13 01:01:19 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:13 2248.9230 -15756.2960 04/28/17 00:58:54 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 01:01:19 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:01:19 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:13 01:01:19 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:13 2248.9230 -15756.2960 04/28/17 00:58:54 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 01:01:19 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:01:19 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:13 01:01:19 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:13 2248.9230 -15756.2960 04/28/17 00:58:54 UTC QUIT_COMMAND) to hramm@hawaii.edu 01:01:19 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:01:19 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:01:30 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:01:32 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:01:32 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:01:32 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:01:32 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:01:32 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:01:39 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 01:01:39 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 01:01:39 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 01:01:39 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.13 01:01:39 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:01:39 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:01:39 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:01:40 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:01:40 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:01:40 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:01:40 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:01:40 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:01:40 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:01:40 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:01:40 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:01:40 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:01:40 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:01:40 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:01:40 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:01:40 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:01:40 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:01:40 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:01:40 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:01:40 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:01:40 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:01:40 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:01:40 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:01:40 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:01:40 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:01:40 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:01:40 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:01:40 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:01:40 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 01:01:40 28 Apr 2017 UTC 01:40:49 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 15807 01:40:49 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:41:45 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 15884 01:41:45 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:41:45 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 01:41:45 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 01:41:45 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:41:45 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427154144 ] 01:41:45 28 Apr 2017 UTC: INFO: Base.py(1333): PID:15892 01:41:45 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 01:41:45 28 Apr 2017 UTC 01:41:45 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 01:41:47 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 01:41:47 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:41:47 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:41:47 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:5 call_cycle:14 01:41:47 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:5 call_cycle:14 2249.4520 -15756.3520 04/28/17 01:31:46 UTC QUIT_COMMAND) to 8082269543@txt.att.net 01:41:47 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:41:47 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:5 call_cycle:14 01:41:47 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:5 call_cycle:14 2249.4520 -15756.3520 04/28/17 01:31:46 UTC QUIT_COMMAND) to 8087808045@vtext.com 01:41:47 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:41:47 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:5 call_cycle:14 01:41:47 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:5 call_cycle:14 2249.4520 -15756.3520 04/28/17 01:31:46 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 01:41:47 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:5 call_cycle:14 01:41:47 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:5 call_cycle:14 2249.4520 -15756.3520 04/28/17 01:31:46 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 01:41:47 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:41:47 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:5 call_cycle:14 01:41:47 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:5 call_cycle:14 2249.4520 -15756.3520 04/28/17 01:31:46 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 01:41:47 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:41:47 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:5 call_cycle:14 01:41:47 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:5 call_cycle:14 2249.4520 -15756.3520 04/28/17 01:31:46 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 01:41:47 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:41:47 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:5 call_cycle:14 01:41:47 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:5 call_cycle:14 2249.4520 -15756.3520 04/28/17 01:31:46 UTC QUIT_COMMAND) to hramm@hawaii.edu 01:41:47 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:41:47 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:41:58 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:42:00 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:42:00 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 01:42:00 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:42:00 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:42:00 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 01:42:07 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 01:42:07 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 01:42:07 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 01:42:07 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.14 01:42:07 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:42:07 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:42:07 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:42:08 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:42:08 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:42:08 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:42:08 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:42:08 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:42:08 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:42:08 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:42:08 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:42:08 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:42:08 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:42:08 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:42:08 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:42:08 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 01:42:08 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 01:42:08 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 01:42:08 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 01:42:08 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 01:42:08 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 01:42:08 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 01:42:08 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 01:42:08 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 01:42:08 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 01:42:08 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:42:08 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:42:08 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:42:08 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 01:42:08 28 Apr 2017 UTC 02:16:37 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 17091 02:16:37 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:16:47 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 17167 02:16:47 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:16:47 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:16:47 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:16:47 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:16:47 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427161647 ] 02:16:47 28 Apr 2017 UTC: INFO: Base.py(1333): PID:17174 02:16:47 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 02:16:47 28 Apr 2017 UTC 02:16:47 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:16:49 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:16:49 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:16:49 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:16:49 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:2 call_cycle:15 02:16:49 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:2 call_cycle:15 2248.3760 -15756.1560 04/28/17 02:12:40 UTC QUIT_COMMAND) to 8082269543@txt.att.net 02:16:49 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:16:49 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:2 call_cycle:15 02:16:49 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:2 call_cycle:15 2248.3760 -15756.1560 04/28/17 02:12:40 UTC QUIT_COMMAND) to 8087808045@vtext.com 02:16:49 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:16:49 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:2 call_cycle:15 02:16:49 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:2 call_cycle:15 2248.3760 -15756.1560 04/28/17 02:12:40 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 02:16:49 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:2 call_cycle:15 02:16:49 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:2 call_cycle:15 2248.3760 -15756.1560 04/28/17 02:12:40 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 02:16:49 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:16:49 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:2 call_cycle:15 02:16:49 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:2 call_cycle:15 2248.3760 -15756.1560 04/28/17 02:12:40 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 02:16:49 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:16:49 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:2 call_cycle:15 02:16:49 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:2 call_cycle:15 2248.3760 -15756.1560 04/28/17 02:12:40 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 02:16:49 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:16:49 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:2 call_cycle:15 02:16:49 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:2 call_cycle:15 2248.3760 -15756.1560 04/28/17 02:12:40 UTC QUIT_COMMAND) to hramm@hawaii.edu 02:16:49 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:16:49 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:17:01 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:17:03 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:17:03 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:17:03 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:17:03 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:17:03 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:17:09 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 02:17:09 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 02:17:09 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 02:17:09 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.15 02:17:09 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:17:09 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:17:09 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:17:10 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:17:10 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:17:10 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:17:10 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:17:10 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:17:10 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:17:10 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:17:10 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:17:10 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:17:10 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:17:10 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:17:10 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:17:10 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:17:10 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:17:10 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:17:10 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:17:10 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:17:10 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:17:10 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:17:10 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:17:10 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:17:10 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:17:10 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:17:10 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:17:10 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:17:10 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 02:17:10 28 Apr 2017 UTC 02:49:21 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 18306 02:49:21 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:50:36 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 18535 02:50:36 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:50:36 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 02:50:36 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 02:50:36 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:50:36 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427165036 ] 02:50:36 28 Apr 2017 UTC: INFO: Base.py(1333): PID:18542 02:50:36 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 02:50:36 28 Apr 2017 UTC 02:50:36 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 02:50:38 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 02:50:38 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:50:38 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:50:38 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:16 02:50:38 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:16 2248.4050 -15756.0760 04/28/17 02:47:51 UTC QUIT_COMMAND) to 8082269543@txt.att.net 02:50:38 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:50:38 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:16 02:50:38 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:16 2248.4050 -15756.0760 04/28/17 02:47:51 UTC QUIT_COMMAND) to 8087808045@vtext.com 02:50:38 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:50:38 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:16 02:50:38 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:1 call_cycle:16 2248.4050 -15756.0760 04/28/17 02:47:51 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 02:50:38 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:16 02:50:38 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:16 2248.4050 -15756.0760 04/28/17 02:47:51 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 02:50:38 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:50:38 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:16 02:50:38 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:16 2248.4050 -15756.0760 04/28/17 02:47:51 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 02:50:39 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:50:39 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:16 02:50:39 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:16 2248.4050 -15756.0760 04/28/17 02:47:51 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 02:50:39 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:50:39 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:16 02:50:39 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:16 2248.4050 -15756.0760 04/28/17 02:47:51 UTC QUIT_COMMAND) to hramm@hawaii.edu 02:50:39 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:50:39 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:50:50 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:50:52 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:50:52 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 02:50:52 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:50:52 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:50:52 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 02:50:58 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 02:50:58 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 02:50:58 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 02:50:58 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.16 02:50:58 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:50:58 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:50:58 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:50:59 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:50:59 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:50:59 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:50:59 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:50:59 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:50:59 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:50:59 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:50:59 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:50:59 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:50:59 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:50:59 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:50:59 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:50:59 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 02:50:59 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 02:50:59 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 02:50:59 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 02:50:59 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 02:50:59 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 02:50:59 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 02:50:59 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 02:50:59 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 02:50:59 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 02:50:59 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:50:59 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:50:59 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:50:59 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 02:50:59 28 Apr 2017 UTC 03:23:02 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 19691 03:23:02 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:25:12 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 19792 03:25:12 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:25:12 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 03:25:12 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 03:25:12 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:25:12 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427172512 ] 03:25:12 28 Apr 2017 UTC: INFO: Base.py(1333): PID:19800 03:25:12 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 03:25:12 28 Apr 2017 UTC 03:25:12 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 03:25:14 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 03:25:14 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:25:14 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:25:14 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:17 03:25:14 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:17 2248.0140 -15755.9110 04/28/17 03:21:32 UTC QUIT_COMMAND) to 8082269543@txt.att.net 03:25:14 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:25:14 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:17 03:25:14 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:17 2248.0140 -15755.9110 04/28/17 03:21:32 UTC QUIT_COMMAND) to 8087808045@vtext.com 03:25:15 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:25:15 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:17 03:25:15 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:1 call_cycle:17 2248.0140 -15755.9110 04/28/17 03:21:32 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 03:25:15 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:17 03:25:15 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:17 2248.0140 -15755.9110 04/28/17 03:21:32 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 03:25:15 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:25:15 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:17 03:25:15 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:17 2248.0140 -15755.9110 04/28/17 03:21:32 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 03:25:15 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:25:15 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:17 03:25:15 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:17 2248.0140 -15755.9110 04/28/17 03:21:32 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 03:25:15 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:25:15 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:17 03:25:15 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:17 2248.0140 -15755.9110 04/28/17 03:21:32 UTC QUIT_COMMAND) to hramm@hawaii.edu 03:25:15 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:25:15 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:25:26 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:25:28 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:25:28 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 03:25:28 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:25:28 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:25:28 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 03:25:35 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 03:25:35 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 03:25:35 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 03:25:35 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.17 03:25:35 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:25:35 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:25:35 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:25:35 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:25:35 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:25:35 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:25:35 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:25:35 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:25:35 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:25:35 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:25:35 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:25:35 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:25:35 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:25:35 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:25:35 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:25:35 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 03:25:35 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 03:25:35 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 03:25:35 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 03:25:35 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 03:25:35 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 03:25:35 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 03:25:35 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 03:25:35 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 03:25:35 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 03:25:35 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:25:35 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:25:35 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:25:35 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 03:25:35 28 Apr 2017 UTC 04:36:29 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 22103 04:36:29 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:37:38 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 22190 04:37:38 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:37:38 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 04:37:38 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 04:37:38 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:37:38 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427183737 ] 04:37:38 28 Apr 2017 UTC: INFO: Base.py(1333): PID:22198 04:37:38 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 04:37:38 28 Apr 2017 UTC 04:37:38 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 04:37:40 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 04:37:40 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:37:40 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:37:40 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:19 04:37:40 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:19 2240.3010 -15754.7770 04/28/17 04:34:31 UTC QUIT_COMMAND) to 8082269543@txt.att.net 04:37:40 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:37:40 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:19 04:37:40 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:19 2240.3010 -15754.7770 04/28/17 04:34:31 UTC QUIT_COMMAND) to 8087808045@vtext.com 04:37:40 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:37:40 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:19 04:37:40 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:1 call_cycle:19 2240.3010 -15754.7770 04/28/17 04:34:31 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 04:37:40 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:19 04:37:40 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:19 2240.3010 -15754.7770 04/28/17 04:34:31 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 04:37:40 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:37:40 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:19 04:37:40 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:19 2240.3010 -15754.7770 04/28/17 04:34:31 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 04:37:40 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:37:40 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:19 04:37:40 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:19 2240.3010 -15754.7770 04/28/17 04:34:31 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 04:37:40 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:37:40 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:19 04:37:40 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:19 2240.3010 -15754.7770 04/28/17 04:34:31 UTC QUIT_COMMAND) to hramm@hawaii.edu 04:37:40 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:37:40 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:37:51 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:37:53 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:37:53 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 04:37:53 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:37:53 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:37:53 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 04:38:00 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 04:38:00 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 04:38:00 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 04:38:00 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.19 04:38:00 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:38:00 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:38:00 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:38:01 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:38:01 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:38:01 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:38:01 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:38:01 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:38:01 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:38:01 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:38:01 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:38:01 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:38:01 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:38:01 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:38:01 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:38:01 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 04:38:01 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 04:38:01 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 04:38:01 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 04:38:01 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 04:38:01 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 04:38:01 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 04:38:01 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 04:38:01 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 04:38:01 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 04:38:01 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:38:01 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:38:01 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:38:01 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 04:38:01 28 Apr 2017 UTC 05:16:30 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 23693 05:16:30 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:17:39 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 23780 05:17:39 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:17:39 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:17:39 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:17:39 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:17:39 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427191739 ] 05:17:39 28 Apr 2017 UTC: INFO: Base.py(1333): PID:23788 05:17:40 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 05:17:40 28 Apr 2017 UTC 05:17:40 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:17:41 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:17:41 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:17:41 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:17:41 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:5 call_cycle:20 05:17:41 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:5 call_cycle:20 2236.8190 -15754.0320 04/28/17 05:08:10 UTC QUIT_COMMAND) to 8082269543@txt.att.net 05:17:42 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:17:42 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:5 call_cycle:20 05:17:42 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:5 call_cycle:20 2236.8190 -15754.0320 04/28/17 05:08:10 UTC QUIT_COMMAND) to 8087808045@vtext.com 05:17:42 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:17:42 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:5 call_cycle:20 05:17:42 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:5 call_cycle:20 2236.8190 -15754.0320 04/28/17 05:08:10 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 05:17:42 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:5 call_cycle:20 05:17:42 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:5 call_cycle:20 2236.8190 -15754.0320 04/28/17 05:08:10 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 05:17:42 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:17:42 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:5 call_cycle:20 05:17:42 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:5 call_cycle:20 2236.8190 -15754.0320 04/28/17 05:08:10 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 05:17:42 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:17:42 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:5 call_cycle:20 05:17:42 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:5 call_cycle:20 2236.8190 -15754.0320 04/28/17 05:08:10 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 05:17:42 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:17:42 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:5 call_cycle:20 05:17:42 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:5 call_cycle:20 2236.8190 -15754.0320 04/28/17 05:08:10 UTC QUIT_COMMAND) to hramm@hawaii.edu 05:17:42 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:17:42 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:17:53 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:17:55 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:17:55 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:17:55 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:17:55 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:17:55 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:18:02 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 05:18:02 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 05:18:02 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 05:18:02 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.20 05:18:02 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:18:02 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:18:02 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:18:02 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:18:02 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:18:02 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:18:02 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:18:02 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:18:02 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:18:02 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:18:02 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:18:02 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:18:02 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:18:02 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:18:02 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:18:02 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:18:02 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:18:02 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:18:02 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:18:02 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:18:02 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:18:02 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:18:02 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:18:02 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:18:02 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:18:02 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:18:02 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:18:02 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:18:02 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 05:18:02 28 Apr 2017 UTC 05:53:32 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 25042 05:53:32 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:55:08 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 25137 05:55:08 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:55:08 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 05:55:08 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 05:55:08 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:55:08 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427195508 ] 05:55:08 28 Apr 2017 UTC: INFO: Base.py(1333): PID:25144 05:55:08 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 05:55:08 28 Apr 2017 UTC 05:55:08 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 05:55:10 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 05:55:10 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:55:10 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:55:10 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:21 05:55:10 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:21 2232.8230 -15752.9080 04/28/17 05:48:30 UTC QUIT_COMMAND) to 8082269543@txt.att.net 05:55:10 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:55:10 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:21 05:55:10 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:21 2232.8230 -15752.9080 04/28/17 05:48:30 UTC QUIT_COMMAND) to 8087808045@vtext.com 05:55:11 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:55:11 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:21 05:55:11 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:3 call_cycle:21 2232.8230 -15752.9080 04/28/17 05:48:30 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 05:55:11 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:21 05:55:11 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:21 2232.8230 -15752.9080 04/28/17 05:48:30 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 05:55:11 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:55:11 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:21 05:55:11 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:21 2232.8230 -15752.9080 04/28/17 05:48:30 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 05:55:11 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:55:11 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:21 05:55:11 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:21 2232.8230 -15752.9080 04/28/17 05:48:30 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 05:55:11 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:55:11 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:21 05:55:11 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:21 2232.8230 -15752.9080 04/28/17 05:48:30 UTC QUIT_COMMAND) to hramm@hawaii.edu 05:55:11 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:55:11 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:55:22 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:55:24 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:55:24 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 05:55:24 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:55:24 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:55:24 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 05:55:31 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 05:55:31 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 05:55:31 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 05:55:31 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.21 05:55:31 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:55:31 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:55:31 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:55:31 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:55:31 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:55:31 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:55:31 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:55:31 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:55:31 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:55:31 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:55:31 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:55:31 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:55:31 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:55:31 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:55:31 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:55:31 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 05:55:31 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 05:55:31 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 05:55:31 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 05:55:31 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 05:55:31 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 05:55:31 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 05:55:31 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 05:55:31 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 05:55:31 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 05:55:31 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:55:31 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:55:31 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:55:31 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 05:55:31 28 Apr 2017 UTC 06:31:16 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 26638 06:31:16 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:32:28 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 26726 06:32:28 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:32:28 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 06:32:28 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 06:32:28 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:32:28 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427203227 ] 06:32:28 28 Apr 2017 UTC: INFO: Base.py(1333): PID:26734 06:32:28 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 06:32:28 28 Apr 2017 UTC 06:32:28 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 06:32:30 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 06:32:30 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:32:30 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:32:30 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:22 06:32:30 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:22 2228.9490 -15751.9640 04/28/17 06:25:44 UTC QUIT_COMMAND) to 8082269543@txt.att.net 06:32:30 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:32:30 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:22 06:32:30 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:22 2228.9490 -15751.9640 04/28/17 06:25:44 UTC QUIT_COMMAND) to 8087808045@vtext.com 06:32:30 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:32:30 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:22 06:32:30 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:3 call_cycle:22 2228.9490 -15751.9640 04/28/17 06:25:44 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 06:32:30 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:22 06:32:30 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:22 2228.9490 -15751.9640 04/28/17 06:25:44 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 06:32:30 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:32:30 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:22 06:32:30 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:22 2228.9490 -15751.9640 04/28/17 06:25:44 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 06:32:30 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:32:30 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:22 06:32:30 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:22 2228.9490 -15751.9640 04/28/17 06:25:44 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 06:32:30 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:32:30 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:22 06:32:30 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:22 2228.9490 -15751.9640 04/28/17 06:25:44 UTC QUIT_COMMAND) to hramm@hawaii.edu 06:32:30 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:32:30 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:32:41 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:32:43 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:32:43 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 06:32:43 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:32:43 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:32:43 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 06:32:50 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 06:32:50 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 06:32:50 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 06:32:50 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.22 06:32:50 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:32:50 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:32:50 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:32:51 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:32:51 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:32:51 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:32:51 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:32:51 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:32:51 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:32:51 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:32:51 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:32:51 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:32:51 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:32:51 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:32:51 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:32:51 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (8087808045@vtext.com,recov) 06:32:51 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 06:32:51 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov) 06:32:51 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 06:32:51 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (hramm@hawaii.edu,alerts,recov) 06:32:51 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 06:32:51 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 06:32:51 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 06:32:51 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 06:32:51 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 06:32:51 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:32:51 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:32:51 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:32:51 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 06:32:51 28 Apr 2017 UTC 07:06:58 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 28035 07:06:58 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:08:21 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 28122 07:08:21 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:08:21 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:08:21 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:08:21 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:08:21 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427210821 ] 07:08:21 28 Apr 2017 UTC: INFO: Base.py(1333): PID:28130 07:08:21 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 07:08:21 28 Apr 2017 UTC 07:08:21 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:08:23 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:08:23 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:08:23 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:08:23 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:2 call_cycle:23 07:08:23 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:2 call_cycle:23 2224.8810 -15751.2410 04/28/17 07:03:29 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 07:08:23 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:2 call_cycle:23 07:08:23 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:2 call_cycle:23 2224.8810 -15751.2410 04/28/17 07:03:29 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 07:08:23 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:08:23 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:2 call_cycle:23 07:08:23 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:2 call_cycle:23 2224.8810 -15751.2410 04/28/17 07:03:29 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 07:08:23 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:08:23 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:08:35 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:08:37 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:08:37 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:08:37 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:08:37 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:08:37 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:08:43 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 07:08:43 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 07:08:43 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 07:08:43 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.23 07:08:43 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:08:43 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:08:43 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:08:44 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:08:44 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:08:44 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:08:44 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:08:44 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:08:44 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:08:44 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:08:44 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:08:44 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:08:44 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:08:44 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:08:44 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:08:44 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:08:44 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:08:44 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:08:44 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:08:44 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:08:44 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 07:08:44 28 Apr 2017 UTC 07:40:35 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 29387 07:40:35 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:42:17 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 29486 07:42:17 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:42:17 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 07:42:17 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 07:42:17 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:42:17 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427214216 ] 07:42:17 28 Apr 2017 UTC: INFO: Base.py(1333): PID:29494 07:42:17 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 07:42:17 28 Apr 2017 UTC 07:42:17 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 07:42:19 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 07:42:19 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:42:19 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:42:19 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:24 07:42:19 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:1 call_cycle:24 2220.8970 -15750.2720 04/28/17 07:39:06 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 07:42:19 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:24 07:42:19 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:24 2220.8970 -15750.2720 04/28/17 07:39:06 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 07:42:19 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:42:19 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:24 07:42:19 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:24 2220.8970 -15750.2720 04/28/17 07:39:06 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 07:42:19 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:42:19 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:42:30 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:42:32 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:42:32 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 07:42:32 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:42:32 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:42:32 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 07:42:39 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 07:42:39 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 07:42:39 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 07:42:39 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.24 07:42:39 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:42:39 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:42:39 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:42:39 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:42:39 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:42:39 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:42:39 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:42:39 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:42:39 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:42:39 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:42:39 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 07:42:39 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 07:42:39 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 07:42:39 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 07:42:39 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 07:42:39 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 07:42:39 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 07:42:39 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:42:39 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:42:39 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:42:39 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 07:42:39 28 Apr 2017 UTC 08:17:44 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 30797 08:17:44 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:18:42 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 30885 08:18:42 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:18:42 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:18:42 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:18:42 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:18:42 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427221841 ] 08:18:42 28 Apr 2017 UTC: INFO: Base.py(1333): PID:30893 08:18:42 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 08:18:42 28 Apr 2017 UTC 08:18:42 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:18:44 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:18:44 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:18:44 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:18:44 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:25 08:18:44 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:3 call_cycle:25 2216.9710 -15749.4860 04/28/17 08:12:55 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 08:18:44 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:25 08:18:44 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:25 2216.9710 -15749.4860 04/28/17 08:12:55 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 08:18:44 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:18:44 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:25 08:18:44 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:25 2216.9710 -15749.4860 04/28/17 08:12:55 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 08:18:44 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:18:44 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:18:56 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:18:58 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:18:58 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:18:58 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:18:58 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:18:58 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:19:04 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 08:19:04 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 08:19:04 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 08:19:04 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.25 08:19:04 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:19:04 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:19:04 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:19:05 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:19:05 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:19:05 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:19:05 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:19:05 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:19:05 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:19:05 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:19:05 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:19:05 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:19:05 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:19:05 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:19:05 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:19:05 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:19:05 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:19:05 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:19:05 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:19:05 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:19:05 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 08:19:05 28 Apr 2017 UTC 08:54:35 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 32163 08:54:35 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:56:18 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 32264 08:56:18 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:56:18 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 08:56:18 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 08:56:18 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:56:18 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427225617 ] 08:56:18 28 Apr 2017 UTC: INFO: Base.py(1333): PID:32272 08:56:18 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 08:56:18 28 Apr 2017 UTC 08:56:18 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 08:56:20 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 08:56:20 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:56:20 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:56:20 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:26 08:56:20 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:3 call_cycle:26 2212.7840 -15748.5010 04/28/17 08:49:13 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 08:56:20 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:26 08:56:20 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:26 2212.7840 -15748.5010 04/28/17 08:49:13 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 08:56:20 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:56:20 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:26 08:56:20 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:26 2212.7840 -15748.5010 04/28/17 08:49:13 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 08:56:20 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:56:20 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:56:31 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:56:33 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:56:33 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 08:56:33 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:56:33 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:56:33 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 08:56:40 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 08:56:40 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 08:56:40 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 08:56:40 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.26 08:56:40 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:56:40 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:56:40 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:56:40 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:56:40 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:56:40 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:56:40 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:56:40 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:56:40 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:56:40 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:56:40 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 08:56:40 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 08:56:40 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 08:56:40 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 08:56:40 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 08:56:40 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 08:56:40 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 08:56:40 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:56:40 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:56:40 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:56:40 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 08:56:40 28 Apr 2017 UTC 09:31:27 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 1351 09:31:27 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:32:23 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 1453 09:32:23 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:32:23 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 09:32:23 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 09:32:23 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:32:23 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170427233222 ] 09:32:23 28 Apr 2017 UTC: INFO: Base.py(1333): PID:1462 09:32:23 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 09:32:23 28 Apr 2017 UTC 09:32:23 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 09:32:25 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 09:32:25 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:32:25 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:32:25 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:27 09:32:25 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:3 call_cycle:27 2208.4770 -15747.4910 04/28/17 09:26:19 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 09:32:25 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:27 09:32:25 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:27 2208.4770 -15747.4910 04/28/17 09:26:19 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 09:32:25 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:32:25 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:27 09:32:25 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:27 2208.4770 -15747.4910 04/28/17 09:26:19 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 09:32:25 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:32:25 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:32:36 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:32:38 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:32:38 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 09:32:38 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:32:38 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:32:38 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 09:32:45 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 09:32:45 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 09:32:45 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 09:32:45 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.27 09:32:45 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:32:45 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:32:45 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:32:45 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:32:45 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:32:45 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:32:45 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:32:45 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:32:45 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:32:45 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:32:45 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 09:32:45 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 09:32:45 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 09:32:45 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 09:32:45 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 09:32:45 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 09:32:45 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 09:32:45 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:32:45 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:32:45 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:32:45 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 09:32:45 28 Apr 2017 UTC 10:04:48 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 3090 10:04:48 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:06:00 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 3188 10:06:00 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:06:00 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:06:00 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:06:00 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:06:00 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170428000600 ] 10:06:00 28 Apr 2017 UTC: INFO: Base.py(1333): PID:3196 10:06:01 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 10:06:01 28 Apr 2017 UTC 10:06:01 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:06:02 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:06:02 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:06:02 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:06:02 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:28 10:06:02 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:1 call_cycle:28 2204.4020 -15746.4920 04/28/17 10:03:22 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 10:06:03 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:28 10:06:03 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:28 2204.4020 -15746.4920 04/28/17 10:03:22 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 10:06:03 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:06:03 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:28 10:06:03 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:28 2204.4020 -15746.4920 04/28/17 10:03:22 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 10:06:03 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:06:03 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:06:14 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:06:16 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:06:16 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:06:16 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:06:16 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:06:16 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:06:23 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 10:06:23 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 10:06:23 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 10:06:23 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.28 10:06:23 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:06:23 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:06:23 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:06:23 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:06:23 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:06:23 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:06:23 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:06:23 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:06:23 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:06:23 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:06:23 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:06:23 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:06:23 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:06:23 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:06:23 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:06:23 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:06:23 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:06:23 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:06:23 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:06:23 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:06:23 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 10:06:23 28 Apr 2017 UTC 10:38:44 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 4330 10:38:44 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:39:39 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 4422 10:39:39 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:39:39 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 10:39:39 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 10:39:39 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:39:39 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170428003938 ] 10:39:39 28 Apr 2017 UTC: INFO: Base.py(1333): PID:4430 10:39:39 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 10:39:39 28 Apr 2017 UTC 10:39:39 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 10:39:41 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 10:39:41 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:39:41 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:39:41 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:29 10:39:41 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:1 call_cycle:29 2200.8250 -15745.7300 04/28/17 10:37:00 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 10:39:41 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:29 10:39:41 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:29 2200.8250 -15745.7300 04/28/17 10:37:00 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 10:39:41 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:39:41 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:29 10:39:41 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:29 2200.8250 -15745.7300 04/28/17 10:37:00 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 10:39:41 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:39:41 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:39:52 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:39:54 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:39:54 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 10:39:54 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:39:55 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:39:55 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 10:40:01 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 10:40:01 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 10:40:01 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 10:40:01 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.29 10:40:01 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:40:01 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:40:01 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:40:02 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:40:02 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:40:02 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:40:02 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:40:02 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:40:02 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:40:02 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:40:02 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 10:40:02 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 10:40:02 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 10:40:02 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 10:40:02 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 10:40:02 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 10:40:02 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 10:40:02 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:40:02 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:40:02 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:40:02 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 10:40:02 28 Apr 2017 UTC 11:17:07 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 5716 11:17:07 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 11:18:14 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 5805 11:18:14 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:18:14 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 11:18:14 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 11:18:14 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:18:14 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170428011814 ] 11:18:14 28 Apr 2017 UTC: INFO: Base.py(1333): PID:5813 11:18:14 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 11:18:14 28 Apr 2017 UTC 11:18:14 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 11:18:16 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 11:18:16 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:18:16 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:18:16 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:4 call_cycle:30 11:18:16 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:4 call_cycle:30 2157.3090 -15744.8670 04/28/17 11:10:14 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 11:18:16 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:4 call_cycle:30 11:18:16 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:4 call_cycle:30 2157.3090 -15744.8670 04/28/17 11:10:14 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 11:18:16 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:18:16 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:4 call_cycle:30 11:18:16 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:4 call_cycle:30 2157.3090 -15744.8670 04/28/17 11:10:14 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 11:18:16 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:18:16 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:18:28 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:18:30 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:18:30 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 11:18:30 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:18:30 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:18:30 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 11:18:37 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 11:18:37 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 11:18:37 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 11:18:37 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.30 11:18:37 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:18:37 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:18:37 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:18:37 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:18:37 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:18:37 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:18:37 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:18:37 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:18:37 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:18:37 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:18:37 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:18:37 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:18:37 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:18:37 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 11:18:37 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 11:18:37 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 11:18:37 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 11:18:37 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:18:37 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:18:37 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:18:37 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 11:18:37 28 Apr 2017 UTC 11:52:23 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 7033 11:52:23 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 11:53:35 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 7127 11:53:35 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:53:35 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 11:53:35 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 11:53:35 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:53:35 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170428015335 ] 11:53:35 28 Apr 2017 UTC: INFO: Base.py(1333): PID:7135 11:53:35 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 11:53:35 28 Apr 2017 UTC 11:53:35 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 11:53:37 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 11:53:37 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:53:37 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:53:37 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:2 call_cycle:31 11:53:37 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:2 call_cycle:31 2153.0530 -15743.9730 04/28/17 11:49:21 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 11:53:37 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:2 call_cycle:31 11:53:37 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:2 call_cycle:31 2153.0530 -15743.9730 04/28/17 11:49:21 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 11:53:37 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:53:37 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:2 call_cycle:31 11:53:37 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:2 call_cycle:31 2153.0530 -15743.9730 04/28/17 11:49:21 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 11:53:37 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:53:37 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:53:49 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:53:51 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:53:51 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 11:53:51 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:53:51 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:53:51 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 11:53:57 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 11:53:57 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 11:53:57 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 11:53:57 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.31 11:53:57 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:53:57 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:53:57 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:53:58 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:53:58 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:53:58 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:53:58 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:53:58 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:53:58 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:53:58 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:53:58 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 11:53:58 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 11:53:58 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 11:53:58 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 11:53:58 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 11:53:58 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 11:53:58 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 11:53:58 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:53:58 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:53:58 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:53:58 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 11:53:58 28 Apr 2017 UTC 12:26:09 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 8451 12:26:09 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:27:20 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 8540 12:27:20 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:27:20 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 12:27:20 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 12:27:20 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:27:20 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170428022720 ] 12:27:20 28 Apr 2017 UTC: INFO: Base.py(1333): PID:8548 12:27:20 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 12:27:20 28 Apr 2017 UTC 12:27:20 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 12:27:22 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 12:27:22 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:27:22 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:27:22 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:32 12:27:22 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:1 call_cycle:32 2148.8270 -15742.9870 04/28/17 12:24:48 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 12:27:22 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:32 12:27:22 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:32 2148.8270 -15742.9870 04/28/17 12:24:48 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 12:27:22 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:27:22 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:32 12:27:22 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:32 2148.8270 -15742.9870 04/28/17 12:24:48 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 12:27:22 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:27:22 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:27:34 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:27:36 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:27:36 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 12:27:36 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:27:36 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:27:36 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 12:27:43 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 12:27:43 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 12:27:43 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 12:27:43 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.32 12:27:43 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:27:43 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:27:43 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:27:43 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:27:43 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:27:43 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:27:43 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:27:43 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:27:43 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:27:43 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:27:43 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 12:27:43 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 12:27:43 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 12:27:43 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 12:27:43 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 12:27:43 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 12:27:43 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 12:27:43 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:27:43 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:27:43 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:27:43 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 12:27:43 28 Apr 2017 UTC 13:04:53 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 10057 13:04:53 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:06:03 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 10147 13:06:03 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:06:03 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:06:03 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:06:03 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:06:03 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170428030603 ] 13:06:03 28 Apr 2017 UTC: INFO: Base.py(1333): PID:10155 13:06:03 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 13:06:03 28 Apr 2017 UTC 13:06:03 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:06:05 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:06:05 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:06:05 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:06:05 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:4 call_cycle:33 13:06:05 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:4 call_cycle:33 2144.8530 -15742.0560 04/28/17 12:57:50 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 13:06:05 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:4 call_cycle:33 13:06:05 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:4 call_cycle:33 2144.8530 -15742.0560 04/28/17 12:57:50 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 13:06:05 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:06:05 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:4 call_cycle:33 13:06:05 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:4 call_cycle:33 2144.8530 -15742.0560 04/28/17 12:57:50 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 13:06:06 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:06:06 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:06:17 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:06:19 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:06:19 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:06:19 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:06:19 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:06:19 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:06:26 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 13:06:26 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 13:06:26 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 13:06:26 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.33 13:06:26 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:06:26 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:06:26 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:06:26 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:06:26 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:06:26 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:06:26 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:06:26 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:06:26 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:06:26 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:06:26 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:06:26 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:06:26 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:06:26 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:06:26 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:06:26 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:06:26 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:06:26 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:06:26 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:06:26 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:06:26 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 13:06:26 28 Apr 2017 UTC 13:38:37 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 11289 13:38:38 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:39:56 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 11379 13:39:56 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:39:56 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 13:39:56 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 13:39:56 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:39:56 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170428033955 ] 13:39:56 28 Apr 2017 UTC: INFO: Base.py(1333): PID:11387 13:39:56 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 13:39:56 28 Apr 2017 UTC 13:39:56 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 13:39:57 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 13:39:57 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:39:57 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:39:57 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:34 13:39:57 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:1 call_cycle:34 2140.0300 -15740.9970 04/28/17 13:36:57 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 13:39:58 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:34 13:39:58 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:34 2140.0300 -15740.9970 04/28/17 13:36:57 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 13:39:58 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:39:58 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:34 13:39:58 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:34 2140.0300 -15740.9970 04/28/17 13:36:57 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 13:39:58 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:39:58 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:40:09 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:40:11 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:40:11 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 13:40:11 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:40:11 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:40:11 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 13:40:18 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 13:40:18 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 13:40:18 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 13:40:18 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.34 13:40:18 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:40:18 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:40:18 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:40:18 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:40:18 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:40:18 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:40:18 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:40:18 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:40:18 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:40:18 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:40:18 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 13:40:18 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 13:40:18 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 13:40:18 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 13:40:18 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 13:40:18 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 13:40:18 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 13:40:18 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:40:18 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:40:18 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:40:18 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 13:40:18 28 Apr 2017 UTC 14:12:09 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 12688 14:12:09 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:13:05 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 12769 14:13:05 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:13:05 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 14:13:05 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 14:13:05 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:13:05 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170428041305 ] 14:13:05 28 Apr 2017 UTC: INFO: Base.py(1333): PID:12777 14:13:05 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 14:13:05 28 Apr 2017 UTC 14:13:05 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 14:13:07 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 14:13:07 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:13:07 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:13:07 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:35 14:13:07 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:1 call_cycle:35 2135.6210 -15739.8610 04/28/17 14:10:46 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 14:13:07 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:35 14:13:07 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:35 2135.6210 -15739.8610 04/28/17 14:10:46 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 14:13:08 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:13:08 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:35 14:13:08 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:35 2135.6210 -15739.8610 04/28/17 14:10:46 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 14:13:08 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:13:08 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:13:19 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:13:21 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:13:21 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 14:13:21 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:13:21 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:13:21 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 14:13:28 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 14:13:28 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 14:13:28 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 14:13:28 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.35 14:13:28 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:13:28 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:13:28 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:13:28 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:13:28 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:13:28 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:13:28 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:13:28 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:13:28 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:13:28 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:13:28 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:13:28 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:13:28 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:13:28 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:13:28 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:13:28 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:13:28 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:13:28 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:13:28 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:13:28 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:13:28 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 14:13:28 28 Apr 2017 UTC 14:49:09 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 13879 14:49:09 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:50:08 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 14125 14:50:08 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:50:08 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 14:50:08 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 14:50:08 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:50:08 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170428045008 ] 14:50:08 28 Apr 2017 UTC: INFO: Base.py(1333): PID:14133 14:50:08 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 14:50:08 28 Apr 2017 UTC 14:50:08 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 14:50:10 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 14:50:10 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:50:10 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:50:10 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:36 14:50:10 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:3 call_cycle:36 2131.0890 -15738.8520 04/28/17 14:44:02 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 14:50:10 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:36 14:50:10 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:36 2131.0890 -15738.8520 04/28/17 14:44:02 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 14:50:10 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:50:10 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:36 14:50:10 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:36 2131.0890 -15738.8520 04/28/17 14:44:02 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 14:50:10 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:50:10 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:50:22 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:50:24 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:50:24 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 14:50:24 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:50:24 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:50:24 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 14:50:31 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 14:50:31 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 14:50:31 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 14:50:31 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.36 14:50:31 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:50:31 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:50:31 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:50:31 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:50:31 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:50:31 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:50:31 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:50:31 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:50:31 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:50:31 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:50:31 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 14:50:31 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 14:50:31 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 14:50:31 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 14:50:31 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 14:50:31 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 14:50:31 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 14:50:31 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:50:31 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:50:31 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:50:31 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 14:50:31 28 Apr 2017 UTC 15:24:00 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 15431 15:24:00 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 15:25:06 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 15521 15:25:06 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 15:25:06 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 15:25:06 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 15:25:06 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 15:25:06 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170428052505 ] 15:25:06 28 Apr 2017 UTC: INFO: Base.py(1333): PID:15529 15:25:06 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 15:25:06 28 Apr 2017 UTC 15:25:06 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 15:25:08 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 15:25:08 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 15:25:08 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:25:08 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:2 call_cycle:37 15:25:08 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:2 call_cycle:37 2126.0780 -15737.7870 04/28/17 15:20:43 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 15:25:08 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:2 call_cycle:37 15:25:08 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:2 call_cycle:37 2126.0780 -15737.7870 04/28/17 15:20:43 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 15:25:08 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:25:08 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:2 call_cycle:37 15:25:08 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:2 call_cycle:37 2126.0780 -15737.7870 04/28/17 15:20:43 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 15:25:08 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:25:08 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 15:25:20 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 15:25:21 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 15:25:21 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 15:25:21 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 15:25:22 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 15:25:22 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 15:25:28 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 15:25:28 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 15:25:28 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 15:25:28 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.37 15:25:28 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 15:25:28 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 15:25:28 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 15:25:29 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 15:25:29 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 15:25:29 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 15:25:29 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:25:29 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:25:29 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:25:29 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 15:25:29 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:25:29 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:25:29 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:25:29 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 15:25:29 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 15:25:29 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 15:25:29 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 15:25:29 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 15:25:29 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 15:25:29 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 15:25:29 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 15:25:29 28 Apr 2017 UTC 15:57:17 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 16648 15:57:17 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 15:58:12 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 16727 15:58:12 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 15:58:12 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 15:58:12 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 15:58:12 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 15:58:12 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170428055812 ] 15:58:12 28 Apr 2017 UTC: INFO: Base.py(1333): PID:16735 15:58:12 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 15:58:12 28 Apr 2017 UTC 15:58:12 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 15:58:14 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 15:58:14 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 15:58:14 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:58:14 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:38 15:58:14 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:1 call_cycle:38 2121.4520 -15737.0070 04/28/17 15:55:45 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 15:58:14 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:38 15:58:14 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:38 2121.4520 -15737.0070 04/28/17 15:55:45 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 15:58:14 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:58:14 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:38 15:58:14 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:38 2121.4520 -15737.0070 04/28/17 15:55:45 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 15:58:14 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:58:14 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 15:58:26 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 15:58:28 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 15:58:28 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 15:58:28 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 15:58:28 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 15:58:28 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 15:58:34 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 15:58:34 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 15:58:34 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 15:58:34 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.38 15:58:34 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 15:58:34 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 15:58:34 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 15:58:35 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 15:58:35 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 15:58:35 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 15:58:35 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:58:35 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:58:35 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:58:35 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 15:58:35 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 15:58:35 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 15:58:35 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 15:58:35 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 15:58:35 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 15:58:35 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 15:58:35 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 15:58:35 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 15:58:35 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 15:58:35 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 15:58:35 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 15:58:35 28 Apr 2017 UTC 16:34:15 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 18139 16:34:15 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:35:12 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 18229 16:35:12 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:35:12 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 16:35:12 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 16:35:12 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:35:12 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170428063512 ] 16:35:12 28 Apr 2017 UTC: INFO: Base.py(1333): PID:18237 16:35:12 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 16:35:12 28 Apr 2017 UTC 16:35:12 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 16:35:14 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 16:35:14 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:35:14 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:35:14 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:39 16:35:14 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:3 call_cycle:39 2117.2240 -15738.0230 04/28/17 16:29:00 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 16:35:14 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:39 16:35:14 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:39 2117.2240 -15738.0230 04/28/17 16:29:00 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 16:35:15 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:35:15 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:39 16:35:15 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:39 2117.2240 -15738.0230 04/28/17 16:29:00 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 16:35:15 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:35:15 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:35:26 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:35:28 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:35:28 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 16:35:28 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:35:28 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:35:28 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 16:35:35 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 16:35:35 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 16:35:35 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 16:35:35 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.39 16:35:35 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:35:35 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:35:35 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:35:35 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:35:35 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:35:35 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:35:35 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:35:35 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:35:35 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:35:35 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:35:35 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 16:35:35 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 16:35:35 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 16:35:35 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 16:35:35 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 16:35:35 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 16:35:35 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 16:35:35 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:35:35 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:35:35 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:35:35 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 16:35:35 28 Apr 2017 UTC 17:13:16 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 19609 17:13:16 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:13:27 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 19684 17:13:27 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:13:27 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:13:27 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:13:27 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:13:27 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170428071327 ] 17:13:27 28 Apr 2017 UTC: INFO: Base.py(1333): PID:19692 17:13:27 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 17:13:27 28 Apr 2017 UTC 17:13:27 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:13:29 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:13:29 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:13:29 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:13:29 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:4 call_cycle:40 17:13:29 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:4 call_cycle:40 2114.7670 -15742.0050 04/28/17 17:06:00 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 17:13:29 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:4 call_cycle:40 17:13:29 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:4 call_cycle:40 2114.7670 -15742.0050 04/28/17 17:06:00 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 17:13:29 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:13:29 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:4 call_cycle:40 17:13:29 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:4 call_cycle:40 2114.7670 -15742.0050 04/28/17 17:06:00 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 17:13:29 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:13:29 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:13:41 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:13:43 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:13:43 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:13:43 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:13:43 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:13:43 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:13:50 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 17:13:50 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 17:13:50 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 17:13:50 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.40 17:13:50 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:13:50 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:13:50 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:13:50 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:13:50 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:13:50 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:13:50 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:13:50 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:13:50 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:13:50 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:13:50 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:13:50 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:13:50 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:13:50 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:13:50 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:13:50 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:13:50 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:13:50 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:13:50 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:13:50 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:13:50 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 17:13:50 28 Apr 2017 UTC 17:49:16 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 20853 17:49:16 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:50:24 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 21099 17:50:24 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:50:24 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 17:50:24 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 17:50:24 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:50:24 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170428075023 ] 17:50:24 28 Apr 2017 UTC: INFO: Base.py(1333): PID:21106 17:50:24 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 17:50:24 28 Apr 2017 UTC 17:50:24 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 17:50:26 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 17:50:26 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:50:26 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:50:26 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:41 17:50:26 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:3 call_cycle:41 2114.3400 -15747.2370 04/28/17 17:43:55 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 17:50:26 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:41 17:50:26 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:41 2114.3400 -15747.2370 04/28/17 17:43:55 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 17:50:26 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:50:26 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:41 17:50:26 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:41 2114.3400 -15747.2370 04/28/17 17:43:55 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 17:50:26 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:50:26 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:50:37 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:50:39 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:50:39 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 17:50:39 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:50:40 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:50:40 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 17:50:46 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 17:50:46 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 17:50:46 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 17:50:46 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.41 17:50:46 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:50:46 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:50:46 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:50:47 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:50:47 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:50:47 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:50:47 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:50:47 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:50:47 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:50:47 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:50:47 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 17:50:47 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 17:50:47 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 17:50:47 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 17:50:47 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 17:50:47 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 17:50:47 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 17:50:47 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:50:47 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:50:47 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:50:47 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 17:50:47 28 Apr 2017 UTC 18:27:13 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 22463 18:27:13 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 18:28:15 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 22552 18:28:15 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:28:15 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 18:28:15 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 18:28:15 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:28:15 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170428082815 ] 18:28:15 28 Apr 2017 UTC: INFO: Base.py(1333): PID:22560 18:28:15 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 18:28:15 28 Apr 2017 UTC 18:28:15 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 18:28:17 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 18:28:17 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:28:17 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:28:17 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:42 18:28:17 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:3 call_cycle:42 2116.0720 -15751.5050 04/28/17 18:20:56 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 18:28:17 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:42 18:28:17 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:42 2116.0720 -15751.5050 04/28/17 18:20:56 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 18:28:17 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:28:17 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:3 call_cycle:42 18:28:17 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:3 call_cycle:42 2116.0720 -15751.5050 04/28/17 18:20:56 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 18:28:17 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:28:17 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:28:29 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:28:31 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:28:31 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 18:28:31 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:28:31 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:28:31 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 18:28:38 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 18:28:38 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 18:28:38 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 18:28:38 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.42 18:28:38 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:28:38 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:28:38 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:28:38 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:28:38 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:28:38 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:28:38 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:28:38 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:28:38 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:28:38 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:28:38 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 18:28:38 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 18:28:38 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 18:28:38 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 18:28:38 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 18:28:38 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 18:28:38 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 18:28:38 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:28:38 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:28:38 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:28:38 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 18:28:38 28 Apr 2017 UTC 19:00:22 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 23753 19:00:22 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:01:21 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 24011 19:01:21 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:01:21 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:01:21 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:01:21 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:01:21 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170428090120 ] 19:01:21 28 Apr 2017 UTC: INFO: Base.py(1333): PID:24019 19:01:21 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 19:01:21 28 Apr 2017 UTC 19:01:21 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:01:23 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:01:23 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:01:23 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:01:23 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:43 19:01:23 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:1 call_cycle:43 2118.9710 -15752.6110 04/28/17 18:59:00 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 19:01:23 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:43 19:01:23 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:43 2118.9710 -15752.6110 04/28/17 18:59:00 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 19:01:23 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:01:23 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:43 19:01:23 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:43 2118.9710 -15752.6110 04/28/17 18:59:00 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 19:01:23 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:01:23 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:01:34 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:01:36 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:01:36 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:01:36 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:01:36 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:01:36 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:01:43 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 19:01:43 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 19:01:43 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 19:01:43 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.43 19:01:43 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:01:43 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:01:43 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:01:43 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:01:43 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:01:43 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:01:43 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:01:43 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:01:43 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:01:43 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:01:43 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:01:43 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:01:43 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:01:43 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:01:43 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:01:43 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:01:43 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:01:43 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:01:43 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:01:43 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:01:43 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 19:01:43 28 Apr 2017 UTC 19:33:22 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 25127 19:33:22 28 Apr 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:34:33 28 Apr 2017 UTC: INFO: BaseLog.py(77): Process id = 25217 19:34:33 28 Apr 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:34:33 28 Apr 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:34:33 28 Apr 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:34:33 28 Apr 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:34:33 28 Apr 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170428093432 ] 19:34:33 28 Apr 2017 UTC: INFO: Base.py(1333): PID:25225 19:34:33 28 Apr 2017 UTC: INFO: Base.py(1375): Started processing 19:34:33 28 Apr 2017 UTC 19:34:33 28 Apr 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:34:35 28 Apr 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:34:35 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:34:35 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:34:35 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:44 19:34:35 28 Apr 2017 UTC: INFO: Base.py(975): Sending GPS (dive:668 calls_made:1 call_cycle:44 2118.9670 -15752.6120 04/28/17 19:31:55 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 19:34:35 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:44 19:34:35 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:44 2118.9670 -15752.6120 04/28/17 19:31:55 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 19:34:35 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:34:35 28 Apr 2017 UTC: INFO: CommLog.py(51): prefix:dive:668 calls_made:1 call_cycle:44 19:34:35 28 Apr 2017 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:668 calls_made:1 call_cycle:44 2118.9670 -15752.6120 04/28/17 19:31:55 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 19:34:35 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:34:35 28 Apr 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:34:46 28 Apr 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:34:48 28 Apr 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:34:48 28 Apr 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:34:48 28 Apr 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:34:48 28 Apr 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:34:48 28 Apr 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:34:55 28 Apr 2017 UTC: WARNING: Base.py(1624): No dives to process 19:34:55 28 Apr 2017 UTC: INFO: Base.py(1656): Dives to process = [] 19:34:55 28 Apr 2017 UTC: INFO: Base.py(1780): No dives found to profile 19:34:55 28 Apr 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.44 19:34:55 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:34:55 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:34:55 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:34:56 28 Apr 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:34:56 28 Apr 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:34:56 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:34:56 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:34:56 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:34:56 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:34:56 28 Apr 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:34:56 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:34:56 28 Apr 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:34:56 28 Apr 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:34:56 28 Apr 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:34:56 28 Apr 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:34:56 28 Apr 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:34:56 28 Apr 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:34:56 28 Apr 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:34:56 28 Apr 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:34:56 28 Apr 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:34:56 28 Apr 2017 UTC: INFO: Base.py(2265): Finished processing 19:34:56 28 Apr 2017 UTC 19:35:34 24 May 2017 UTC: INFO: BaseLog.py(77): Process id = 29258 19:35:34 24 May 2017 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:36:54 24 May 2017 UTC: INFO: BaseLog.py(77): Process id = 29303 19:36:54 24 May 2017 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:36:54 24 May 2017 UTC: INFO: Utils.py(659): Python version 2.7.5 19:36:54 24 May 2017 UTC: INFO: Utils.py(668): Numpy version 1.7.1 19:36:54 24 May 2017 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:36:54 24 May 2017 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_170524093653 ] 19:36:54 24 May 2017 UTC: INFO: Base.py(1333): PID:29311 19:36:54 24 May 2017 UTC: INFO: Base.py(1375): Started processing 19:36:54 24 May 2017 UTC 19:36:54 24 May 2017 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 66, line -1:0:1:0:1:147:0:147:2246:2364:-48.08:0.02:14.90:15.07:7.53:38.62 GPS,221116,233314,2119.005,-15752.576,11,1.3,11,9.7 19:36:56 24 May 2017 UTC: INFO: Base.py(1403): Instrument ID = 626 19:36:56 24 May 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:36:56 24 May 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:36:56 24 May 2017 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 19:36:56 24 May 2017 UTC: INFO: Base.py(975): Sending GPS (No GPS fix available for this call) to sdrifter@soest.hawaii.edu 19:36:56 24 May 2017 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 19:36:56 24 May 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:36:56 24 May 2017 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 19:36:56 24 May 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:36:56 24 May 2017 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:37:08 24 May 2017 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:37:10 24 May 2017 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:37:10 24 May 2017 UTC: INFO: Base.py(1577): No new selftests to processed 19:37:10 24 May 2017 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:37:10 24 May 2017 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:37:10 24 May 2017 UTC: INFO: Base.py(1602): Processing dive(s) 19:37:16 24 May 2017 UTC: WARNING: Base.py(1624): No dives to process 19:37:16 24 May 2017 UTC: INFO: Base.py(1656): Dives to process = [] 19:37:16 24 May 2017 UTC: INFO: Base.py(1780): No dives found to profile 19:37:16 24 May 2017 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.668.44 19:37:16 24 May 2017 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:37:16 24 May 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:37:16 24 May 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:37:17 24 May 2017 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:37:17 24 May 2017 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:37:17 24 May 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:37:17 24 May 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:37:17 24 May 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:37:17 24 May 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:37:17 24 May 2017 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:37:17 24 May 2017 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,alerts,recov) 19:37:17 24 May 2017 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,recov) 19:37:17 24 May 2017 UTC: INFO: Base.py(991): Finished processing on .pagers 19:37:17 24 May 2017 UTC: INFO: Base.py(877): Starting processing on .ftp 19:37:17 24 May 2017 UTC: INFO: Base.py(888): Finished processing on .ftp 19:37:17 24 May 2017 UTC: INFO: Base.py(2027): Starting processing on .mailer 19:37:17 24 May 2017 UTC: INFO: Base.py(2243): Finished processing on .mailer 19:37:17 24 May 2017 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:37:17 24 May 2017 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:37:17 24 May 2017 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:37:17 24 May 2017 UTC: INFO: Base.py(2265): Finished processing 19:37:17 24 May 2017 UTC